Query psy12488
Match_columns 91
No_of_seqs 116 out of 1015
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 20:36:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0234 GroS Co-chaperonin Gro 100.0 4.8E-34 1E-38 187.1 8.4 84 6-89 13-96 (96)
2 PRK00364 groES co-chaperonin G 100.0 3.4E-32 7.3E-37 178.0 9.4 83 6-88 13-95 (95)
3 cd00320 cpn10 Chaperonin 10 Kd 100.0 3E-31 6.5E-36 172.8 8.7 82 6-87 12-93 (93)
4 PTZ00414 10 kDa heat shock pro 100.0 1.8E-30 3.9E-35 171.8 8.3 78 6-88 22-99 (100)
5 PRK14533 groES co-chaperonin G 100.0 2.7E-30 5.8E-35 168.3 8.6 79 6-89 13-91 (91)
6 PF00166 Cpn10: Chaperonin 10 100.0 1.9E-29 4E-34 163.8 8.6 81 7-87 13-93 (93)
7 KOG1641|consensus 99.9 1.3E-26 2.7E-31 153.4 5.8 82 6-87 21-103 (104)
8 KOG1197|consensus 93.8 0.06 1.3E-06 42.0 2.9 27 27-62 70-96 (336)
9 PF08240 ADH_N: Alcohol dehydr 93.5 0.078 1.7E-06 33.8 2.7 26 28-62 38-63 (109)
10 COG1062 AdhC Zn-dependent alco 91.7 0.15 3.3E-06 40.6 2.6 23 29-60 63-85 (366)
11 PF08140 Cuticle_1: Crustacean 91.0 0.27 5.9E-06 27.6 2.5 34 15-48 2-38 (40)
12 COG0604 Qor NADPH:quinone redu 89.6 0.49 1.1E-05 36.3 3.7 43 27-83 63-108 (326)
13 TIGR03366 HpnZ_proposed putati 88.3 0.56 1.2E-05 34.3 3.2 30 29-62 6-36 (280)
14 KOG0025|consensus 87.1 1.5 3.2E-05 34.8 4.9 43 28-79 84-130 (354)
15 COG4384 Mu-like prophage prote 86.4 2.7 5.9E-05 31.0 5.7 50 28-83 78-134 (203)
16 TIGR02819 fdhA_non_GSH formald 86.2 0.86 1.9E-05 35.5 3.3 25 28-61 68-92 (393)
17 PF06890 Phage_Mu_Gp45: Bacter 84.4 6.7 0.00015 27.9 6.9 40 17-64 48-87 (162)
18 cd08230 glucose_DH Glucose deh 83.1 1.2 2.6E-05 33.5 2.8 24 28-61 64-87 (355)
19 COG1064 AdhP Zn-dependent alco 83.1 1.2 2.6E-05 35.1 2.9 25 28-61 64-88 (339)
20 KOG0022|consensus 81.9 1.4 3E-05 35.2 2.8 23 28-59 68-90 (375)
21 PLN02586 probable cinnamyl alc 80.6 1.9 4.1E-05 32.9 3.1 24 28-60 73-96 (360)
22 cd08281 liver_ADH_like1 Zinc-d 78.3 2.2 4.8E-05 32.4 2.8 24 28-60 68-91 (371)
23 PRK10309 galactitol-1-phosphat 78.0 2.5 5.5E-05 31.5 3.0 25 28-61 60-84 (347)
24 TIGR02822 adh_fam_2 zinc-bindi 77.7 2.4 5.2E-05 31.8 2.8 25 28-61 63-87 (329)
25 TIGR01202 bchC 2-desacetyl-2-h 77.6 2.8 6.1E-05 31.1 3.1 47 28-84 65-115 (308)
26 PLN02178 cinnamyl-alcohol dehy 77.4 2.7 5.9E-05 32.4 3.1 24 28-60 67-90 (375)
27 PF02559 CarD_CdnL_TRCF: CarD- 77.3 4 8.8E-05 25.7 3.4 30 52-81 2-39 (98)
28 COG1329 Transcriptional regula 77.1 4 8.7E-05 29.4 3.7 38 50-87 3-50 (166)
29 cd08301 alcohol_DH_plants Plan 76.9 2.5 5.4E-05 32.0 2.7 24 29-61 64-87 (369)
30 cd08237 ribitol-5-phosphate_DH 76.5 7 0.00015 29.4 5.1 45 28-83 65-128 (341)
31 PLN02827 Alcohol dehydrogenase 75.9 2.6 5.6E-05 32.4 2.6 24 29-61 71-94 (378)
32 cd08293 PTGR2 Prostaglandin re 75.8 3.2 7E-05 30.6 3.1 25 28-61 75-99 (345)
33 cd08269 Zn_ADH9 Alcohol dehydr 75.6 7.2 0.00016 28.0 4.8 26 28-62 58-83 (312)
34 KOG0024|consensus 75.3 1.2 2.6E-05 35.4 0.7 26 28-62 68-93 (354)
35 cd08239 THR_DH_like L-threonin 75.2 3.2 6.9E-05 30.7 2.9 26 28-62 61-86 (339)
36 TIGR02818 adh_III_F_hyde S-(hy 75.1 3.2 6.9E-05 31.6 2.9 25 28-61 62-86 (368)
37 cd08238 sorbose_phosphate_red 74.6 3.5 7.6E-05 31.9 3.1 25 29-61 70-94 (410)
38 PLN02740 Alcohol dehydrogenase 74.3 3.2 7E-05 31.7 2.8 25 28-61 72-96 (381)
39 cd08300 alcohol_DH_class_III c 73.8 3.8 8.3E-05 31.0 3.1 25 28-61 63-87 (368)
40 TIGR03451 mycoS_dep_FDH mycoth 73.3 4 8.7E-05 30.7 3.1 24 28-60 61-84 (358)
41 PRK10083 putative oxidoreducta 73.2 4.3 9.3E-05 29.9 3.1 24 29-61 61-84 (339)
42 PLN02514 cinnamyl-alcohol dehy 72.9 3.8 8.3E-05 31.0 2.9 24 28-60 70-93 (357)
43 cd08277 liver_alcohol_DH_like 71.8 4.4 9.5E-05 30.7 3.0 25 28-61 62-86 (365)
44 PF01079 Hint: Hint module; I 71.4 8.6 0.00019 28.4 4.4 25 41-65 20-45 (217)
45 cd08233 butanediol_DH_like (2R 70.6 4.6 0.0001 30.1 2.8 24 28-60 71-94 (351)
46 TIGR00692 tdh L-threonine 3-de 70.4 5.3 0.00012 29.6 3.1 25 28-61 62-86 (340)
47 cd08264 Zn_ADH_like2 Alcohol d 69.5 5.8 0.00013 28.9 3.1 25 28-61 61-85 (325)
48 cd08292 ETR_like_2 2-enoyl thi 69.3 6 0.00013 28.6 3.1 26 28-62 65-90 (324)
49 cd05278 FDH_like Formaldehyde 69.0 6.1 0.00013 29.0 3.1 24 28-60 61-84 (347)
50 TIGR02817 adh_fam_1 zinc-bindi 68.6 6.3 0.00014 28.8 3.1 25 28-61 65-89 (336)
51 cd08291 ETR_like_1 2-enoyl thi 68.0 6.7 0.00015 28.8 3.2 26 28-61 67-92 (324)
52 cd08287 FDH_like_ADH3 formalde 67.7 6.4 0.00014 29.1 3.0 24 28-60 60-83 (345)
53 cd08278 benzyl_alcohol_DH Benz 66.8 6.3 0.00014 29.8 2.9 24 28-60 62-85 (365)
54 cd08235 iditol_2_DH_like L-idi 66.6 7.1 0.00015 28.7 3.1 24 28-60 60-83 (343)
55 cd05188 MDR Medium chain reduc 66.2 7.1 0.00015 27.0 2.9 26 28-62 36-61 (271)
56 cd08236 sugar_DH NAD(P)-depend 65.5 7.8 0.00017 28.6 3.1 25 28-61 59-83 (343)
57 cd08260 Zn_ADH6 Alcohol dehydr 65.5 7.7 0.00017 28.7 3.1 24 28-60 61-84 (345)
58 cd08261 Zn_ADH7 Alcohol dehydr 65.2 7.5 0.00016 28.6 3.0 24 28-60 60-83 (337)
59 cd08262 Zn_ADH8 Alcohol dehydr 65.1 7.8 0.00017 28.5 3.1 25 28-61 70-95 (341)
60 cd05284 arabinose_DH_like D-ar 65.1 7.8 0.00017 28.4 3.1 24 29-61 65-88 (340)
61 cd08255 2-desacetyl-2-hydroxye 64.9 12 0.00025 26.7 3.8 26 27-61 26-51 (277)
62 cd08285 NADP_ADH NADP(H)-depen 64.7 7.2 0.00016 29.0 2.8 25 28-61 60-84 (351)
63 cd08286 FDH_like_ADH2 formalde 64.5 7.7 0.00017 28.7 2.9 24 29-61 62-85 (345)
64 cd08284 FDH_like_2 Glutathione 64.0 8.5 0.00018 28.3 3.1 24 28-60 60-83 (344)
65 cd08232 idonate-5-DH L-idonate 63.3 8 0.00017 28.4 2.8 23 29-60 61-83 (339)
66 cd08283 FDH_like_1 Glutathione 63.2 8.4 0.00018 29.5 3.0 25 28-61 61-85 (386)
67 cd08258 Zn_ADH4 Alcohol dehydr 62.8 9.5 0.00021 28.1 3.2 25 28-61 62-86 (306)
68 cd05279 Zn_ADH1 Liver alcohol 62.6 9.2 0.0002 28.9 3.1 25 28-61 60-84 (365)
69 PLN02702 L-idonate 5-dehydroge 62.4 8.5 0.00019 28.9 2.9 24 28-60 80-103 (364)
70 COG1063 Tdh Threonine dehydrog 62.1 9.6 0.00021 29.3 3.2 53 28-90 62-141 (350)
71 PTZ00354 alcohol dehydrogenase 62.0 9.8 0.00021 27.5 3.1 24 28-60 65-88 (334)
72 COG3450 Predicted enzyme of th 61.9 15 0.00032 24.9 3.7 31 48-78 82-114 (116)
73 cd08290 ETR 2-enoyl thioester 61.7 9.9 0.00022 27.9 3.1 26 28-62 70-95 (341)
74 cd08279 Zn_ADH_class_III Class 61.3 8.9 0.00019 28.9 2.8 24 28-60 60-83 (363)
75 cd05283 CAD1 Cinnamyl alcohol 61.2 9.7 0.00021 28.2 3.0 24 28-60 60-83 (337)
76 PRK05396 tdh L-threonine 3-deh 60.5 11 0.00024 27.9 3.1 24 29-61 65-88 (341)
77 cd08231 MDR_TM0436_like Hypoth 60.1 9.7 0.00021 28.4 2.8 30 28-61 61-91 (361)
78 smart00829 PKS_ER Enoylreducta 59.9 10 0.00022 26.3 2.7 25 28-61 30-54 (288)
79 cd08282 PFDH_like Pseudomonas 59.5 11 0.00023 28.7 3.0 24 28-60 60-83 (375)
80 cd08274 MDR9 Medium chain dehy 59.3 11 0.00025 27.6 3.0 24 29-61 85-108 (350)
81 cd05285 sorbitol_DH Sorbitol d 59.2 11 0.00024 27.9 3.0 24 28-60 61-84 (343)
82 cd08259 Zn_ADH5 Alcohol dehydr 59.1 12 0.00025 27.1 3.0 25 28-61 61-85 (332)
83 PRK10754 quinone oxidoreductas 59.0 12 0.00026 27.3 3.1 25 28-61 64-88 (327)
84 COG2140 Thermophilic glucose-6 59.0 13 0.00029 27.6 3.3 35 43-77 121-156 (209)
85 cd08246 crotonyl_coA_red croto 58.9 12 0.00025 28.5 3.1 24 29-61 89-112 (393)
86 cd08240 6_hydroxyhexanoate_dh_ 58.6 12 0.00026 27.8 3.1 25 28-61 73-97 (350)
87 cd08266 Zn_ADH_like1 Alcohol d 57.9 11 0.00025 27.0 2.8 25 28-61 64-88 (342)
88 cd08297 CAD3 Cinnamyl alcohol 57.8 29 0.00063 25.5 5.0 24 28-60 63-86 (341)
89 PRK10838 spr outer membrane li 57.7 3.1 6.6E-05 30.2 -0.2 35 15-62 105-139 (190)
90 PF10844 DUF2577: Protein of u 57.5 9.8 0.00021 24.6 2.2 22 51-78 76-97 (100)
91 cd08268 MDR2 Medium chain dehy 57.4 13 0.00029 26.4 3.1 24 28-60 64-87 (328)
92 TIGR01751 crot-CoA-red crotony 57.1 12 0.00025 28.8 2.9 24 29-61 85-108 (398)
93 cd07376 PLPDE_III_DSD_D-TA_lik 56.9 22 0.00047 26.9 4.3 37 51-88 305-342 (345)
94 COG4079 Uncharacterized protei 56.8 19 0.0004 27.9 3.8 28 51-79 261-292 (293)
95 cd08254 hydroxyacyl_CoA_DH 6-h 56.7 13 0.00028 27.0 2.9 23 29-60 64-86 (338)
96 PRK09422 ethanol-active dehydr 56.3 13 0.00028 27.3 2.9 24 28-60 60-83 (338)
97 cd05195 enoyl_red enoyl reduct 55.9 15 0.00032 25.4 3.0 25 28-61 34-58 (293)
98 cd08234 threonine_DH_like L-th 55.9 15 0.00032 26.9 3.1 24 28-60 59-82 (334)
99 cd08299 alcohol_DH_class_I_II_ 55.7 13 0.00028 28.4 2.9 25 28-61 67-91 (373)
100 cd08245 CAD Cinnamyl alcohol d 55.1 15 0.00032 26.8 3.1 25 28-61 60-84 (330)
101 cd08270 MDR4 Medium chain dehy 55.0 16 0.00035 26.1 3.2 25 28-61 58-82 (305)
102 cd08244 MDR_enoyl_red Possible 54.7 16 0.00034 26.4 3.1 25 28-61 66-90 (324)
103 smart00696 DM9 Repeats found i 54.6 17 0.00037 22.2 2.8 53 20-74 12-66 (71)
104 cd05282 ETR_like 2-enoyl thioe 54.4 16 0.00035 26.3 3.1 26 28-62 63-88 (323)
105 cd08251 polyketide_synthase po 54.3 15 0.00033 25.8 2.9 25 28-61 44-68 (303)
106 TIGR03201 dearomat_had 6-hydro 53.6 16 0.00034 27.4 3.0 24 28-61 60-83 (349)
107 PF10794 DUF2606: Protein of u 53.4 58 0.0013 22.6 5.5 42 26-69 71-112 (131)
108 PLN03154 putative allyl alcoho 53.3 14 0.0003 28.0 2.7 24 28-60 81-104 (348)
109 cd08265 Zn_ADH3 Alcohol dehydr 53.2 17 0.00036 27.8 3.1 25 28-61 94-118 (384)
110 cd08248 RTN4I1 Human Reticulon 53.0 16 0.00035 26.8 2.9 25 28-61 80-104 (350)
111 cd08273 MDR8 Medium chain dehy 52.2 17 0.00036 26.4 2.9 42 28-83 64-105 (331)
112 KOG0023|consensus 51.9 14 0.0003 29.7 2.5 25 28-61 72-96 (360)
113 PRK11479 hypothetical protein; 51.7 6.7 0.00015 30.2 0.8 39 11-62 37-75 (274)
114 TIGR00074 hypC_hupF hydrogenas 51.6 24 0.00051 22.1 3.1 12 51-62 35-46 (76)
115 cd06555 ASCH_PF0470_like ASC-1 51.4 12 0.00026 24.9 1.9 15 51-65 31-45 (109)
116 cd08249 enoyl_reductase_like e 51.3 19 0.00041 26.8 3.1 25 28-61 61-85 (339)
117 cd08263 Zn_ADH10 Alcohol dehyd 51.1 17 0.00036 27.4 2.8 27 28-60 60-86 (367)
118 cd00148 PROF Profilin binds ac 50.8 32 0.00069 22.9 3.9 20 66-85 60-79 (127)
119 cd08296 CAD_like Cinnamyl alco 50.8 19 0.00041 26.6 3.1 24 28-60 61-84 (333)
120 cd08267 MDR1 Medium chain dehy 50.7 20 0.00043 25.6 3.0 25 28-61 65-89 (319)
121 cd08298 CAD2 Cinnamyl alcohol 50.1 19 0.0004 26.3 2.9 23 29-60 66-88 (329)
122 PF01455 HupF_HypC: HupF/HypC 50.1 22 0.00048 21.6 2.8 12 51-62 37-48 (68)
123 PRK13771 putative alcohol dehy 49.7 20 0.00044 26.2 3.0 25 28-61 61-85 (334)
124 cd08272 MDR6 Medium chain dehy 49.5 22 0.00047 25.3 3.1 25 28-61 64-88 (326)
125 cd08271 MDR5 Medium chain dehy 49.5 19 0.00042 25.7 2.9 25 28-61 63-87 (325)
126 cd08253 zeta_crystallin Zeta-c 49.3 19 0.00041 25.5 2.7 26 28-62 64-89 (325)
127 TIGR03214 ura-cupin putative a 48.6 32 0.00069 25.7 4.0 49 30-80 202-253 (260)
128 PRK09880 L-idonate 5-dehydroge 48.4 23 0.00049 26.5 3.2 24 28-62 66-89 (343)
129 cd05286 QOR2 Quinone oxidoredu 48.2 24 0.00051 24.8 3.1 25 28-61 61-85 (320)
130 cd08250 Mgc45594_like Mgc45594 47.2 25 0.00055 25.5 3.2 25 28-61 67-91 (329)
131 COG4043 Preprotein translocase 47.0 12 0.00026 25.2 1.3 12 51-62 33-44 (111)
132 cd08256 Zn_ADH2 Alcohol dehydr 46.3 23 0.00051 26.3 2.9 25 29-60 70-94 (350)
133 cd08252 AL_MDR Arginate lyase 45.3 25 0.00054 25.6 2.9 25 28-61 66-90 (336)
134 PRK05889 putative acetyl-CoA c 44.5 44 0.00095 19.7 3.5 29 59-87 42-70 (71)
135 PRK10413 hydrogenase 2 accesso 44.3 42 0.0009 21.3 3.5 12 51-62 42-53 (82)
136 cd05281 TDH Threonine dehydrog 44.3 28 0.00061 25.7 3.1 24 28-60 64-87 (341)
137 TIGR00739 yajC preprotein tran 44.1 66 0.0014 20.2 4.4 25 51-75 37-62 (84)
138 cd05276 p53_inducible_oxidored 44.0 26 0.00055 24.7 2.7 25 28-61 64-88 (323)
139 PF11302 DUF3104: Protein of u 42.6 16 0.00035 23.1 1.3 15 50-64 4-18 (75)
140 TIGR03784 marine_sortase sorta 42.5 35 0.00075 24.2 3.2 32 51-82 108-139 (174)
141 PF00235 Profilin: Profilin; 42.1 25 0.00054 22.6 2.3 18 65-82 58-75 (121)
142 cd08275 MDR3 Medium chain dehy 42.0 30 0.00065 24.8 2.9 25 28-61 63-87 (337)
143 PF05203 Hom_end_hint: Hom_end 41.2 38 0.00083 24.9 3.4 30 35-64 3-33 (215)
144 cd08247 AST1_like AST1 is a cy 41.2 34 0.00074 25.3 3.2 25 28-60 65-89 (352)
145 smart00392 PROF Profilin. Bind 41.1 49 0.0011 22.0 3.6 19 66-84 62-80 (129)
146 TIGR02824 quinone_pig3 putativ 40.4 37 0.00079 24.0 3.1 25 28-61 64-88 (325)
147 cd05289 MDR_like_2 alcohol deh 40.2 32 0.00069 24.1 2.8 26 28-62 66-91 (309)
148 PF01052 SpoA: Surface present 40.0 59 0.0013 19.3 3.6 26 51-76 28-55 (77)
149 PRK02268 hypothetical protein; 39.5 17 0.00036 25.4 1.2 14 47-60 30-44 (141)
150 cd08276 MDR7 Medium chain dehy 38.5 37 0.00079 24.4 2.9 25 28-61 64-88 (336)
151 PF12791 RsgI_N: Anti-sigma fa 37.4 34 0.00074 19.3 2.1 12 51-62 25-36 (56)
152 PF07591 PT-HINT: Pretoxin HIN 37.3 11 0.00024 25.3 0.0 19 43-62 5-24 (130)
153 cd06819 PLPDE_III_LS_D-TA Type 37.2 64 0.0014 24.5 4.1 36 51-87 316-352 (358)
154 cd00165 S4 S4/Hsp/ tRNA synthe 36.9 71 0.0015 17.2 3.6 28 51-78 41-69 (70)
155 cd04451 S1_IF1 S1_IF1: Transla 36.8 25 0.00054 20.5 1.5 11 51-61 40-50 (64)
156 PF13375 RnfC_N: RnfC Barrel s 36.2 32 0.00069 22.4 2.1 13 49-61 43-55 (101)
157 COG3264 Small-conductance mech 36.1 47 0.001 29.5 3.6 16 51-66 660-675 (835)
158 PF12852 Cupin_6: Cupin 35.9 23 0.0005 24.4 1.4 32 33-64 40-71 (186)
159 PRK10409 hydrogenase assembly 34.7 26 0.00056 22.7 1.4 12 51-62 41-52 (90)
160 PRK10689 transcription-repair 34.5 64 0.0014 29.4 4.2 32 50-81 475-514 (1147)
161 PRK00276 infA translation init 34.1 30 0.00064 20.9 1.5 14 51-64 46-61 (72)
162 PF09871 DUF2098: Uncharacteri 34.0 1E+02 0.0023 19.9 4.2 34 51-84 2-40 (91)
163 PF11549 Sec31: Protein transp 33.9 15 0.00032 21.6 0.1 19 20-38 29-47 (51)
164 cd05288 PGDH Prostaglandin deh 33.6 47 0.001 24.1 2.8 23 28-61 71-93 (329)
165 PF01878 EVE: EVE domain; Int 33.6 22 0.00049 23.6 1.0 12 51-62 39-50 (143)
166 KOG3309|consensus 33.2 11 0.00024 27.0 -0.5 22 41-62 49-70 (159)
167 PF13403 Hint_2: Hint domain 33.2 1E+02 0.0022 21.1 4.3 38 38-75 7-44 (147)
168 cd08242 MDR_like Medium chain 33.1 55 0.0012 23.7 3.1 21 28-60 57-77 (319)
169 cd08243 quinone_oxidoreductase 33.1 55 0.0012 23.3 3.1 23 28-61 63-85 (320)
170 PRK05585 yajC preprotein trans 33.0 1.1E+02 0.0024 20.1 4.3 22 51-72 52-74 (106)
171 PF06560 GPI: Glucose-6-phosph 33.0 44 0.00095 24.2 2.5 32 46-77 108-140 (182)
172 TIGR03635 S17_bact 30S ribosom 32.8 26 0.00057 21.5 1.2 13 50-62 47-59 (71)
173 TIGR00523 eIF-1A eukaryotic/ar 32.6 22 0.00048 23.3 0.8 17 50-66 56-72 (99)
174 cd08241 QOR1 Quinone oxidoredu 32.5 60 0.0013 22.8 3.2 25 28-61 64-88 (323)
175 PF02699 YajC: Preprotein tran 32.5 15 0.00032 23.0 0.0 23 51-73 36-59 (82)
176 PF03829 PTSIIA_gutA: PTS syst 32.5 1.6E+02 0.0034 19.7 5.2 13 29-41 5-17 (117)
177 PRK11165 diaminopimelate decar 32.4 79 0.0017 25.0 4.1 12 51-62 363-374 (420)
178 PF09285 Elong-fact-P_C: Elong 32.4 41 0.00089 19.9 1.9 19 47-65 33-51 (56)
179 CHL00010 infA translation init 31.9 79 0.0017 19.5 3.3 15 50-64 45-61 (78)
180 TIGR00580 mfd transcription-re 31.8 75 0.0016 28.3 4.2 32 50-81 326-365 (926)
181 TIGR02825 B4_12hDH leukotriene 31.6 45 0.00097 24.5 2.4 21 28-60 64-84 (325)
182 COG0309 HypE Hydrogenase matur 31.3 42 0.00091 26.7 2.3 31 36-66 145-175 (339)
183 PRK06763 F0F1 ATP synthase sub 30.9 64 0.0014 24.1 3.1 35 27-61 40-84 (213)
184 cd06820 PLPDE_III_LS_D-TA_like 30.9 90 0.0019 23.7 4.1 37 51-88 311-348 (353)
185 COG4506 Uncharacterized protei 30.9 47 0.001 23.4 2.3 22 66-87 56-77 (143)
186 COG1465 Predicted alternative 30.7 1.5E+02 0.0032 23.8 5.2 34 47-80 276-316 (376)
187 PF07378 FlbT: Flagellar prote 30.3 43 0.00094 22.8 2.0 34 50-84 3-42 (126)
188 PF15057 DUF4537: Domain of un 30.1 49 0.0011 22.1 2.2 14 49-62 53-66 (124)
189 PF02643 DUF192: Uncharacteriz 30.1 17 0.00038 23.6 0.0 25 32-62 84-108 (108)
190 cd06812 PLPDE_III_DSD_D-TA_lik 29.9 92 0.002 23.8 4.0 36 51-87 331-368 (374)
191 PF03293 Pox_RNA_pol: Poxvirus 29.9 1.2E+02 0.0025 21.7 4.1 34 51-84 98-131 (160)
192 PRK06531 yajC preprotein trans 29.8 1.2E+02 0.0027 20.3 4.1 33 51-83 36-70 (113)
193 PF13856 Gifsy-2: ATP-binding 29.6 82 0.0018 19.8 3.1 30 50-81 56-85 (95)
194 PF13464 DUF4115: Domain of un 29.6 1.2E+02 0.0026 18.1 3.8 24 54-77 38-61 (77)
195 TIGR03102 halo_cynanin halocya 29.6 88 0.0019 20.8 3.4 32 30-61 22-55 (115)
196 PF11901 DUF3421: Protein of u 29.5 42 0.00091 22.2 1.8 49 20-70 68-118 (119)
197 PF06236 MelC1: Tyrosinase co- 29.3 75 0.0016 21.9 3.0 18 65-82 70-87 (125)
198 cd05829 Sortase_E Sortase E (S 29.3 67 0.0015 21.7 2.8 41 30-70 49-91 (144)
199 smart00306 HintN Hint (Hedgeho 29.1 49 0.0011 19.8 2.0 22 42-63 11-33 (100)
200 cd08294 leukotriene_B4_DH_like 29.0 1.1E+02 0.0024 22.1 4.1 11 51-61 77-87 (329)
201 PRK04190 glucose-6-phosphate i 28.9 1.2E+02 0.0026 21.9 4.3 34 43-76 115-149 (191)
202 COG0298 HypC Hydrogenase matur 28.7 55 0.0012 21.0 2.2 17 46-62 33-49 (82)
203 PF00278 Orn_DAP_Arg_deC: Pyri 28.6 51 0.0011 20.7 2.1 34 32-65 59-96 (116)
204 cd03703 aeIF5B_II aeIF5B_II: T 27.8 67 0.0015 21.5 2.6 19 51-69 26-47 (110)
205 PRK05886 yajC preprotein trans 27.8 78 0.0017 21.1 2.9 21 51-71 38-59 (109)
206 PRK13914 invasion associated s 27.4 27 0.00059 29.0 0.7 35 16-63 404-438 (481)
207 PRK06033 hypothetical protein; 27.4 1.5E+02 0.0033 18.5 4.0 27 51-77 27-55 (83)
208 PF00877 NLPC_P60: NlpC/P60 fa 27.1 27 0.00058 21.8 0.5 30 50-79 50-82 (105)
209 PRK06788 flagellar motor switc 26.8 1.4E+02 0.003 20.2 4.0 47 27-76 33-81 (119)
210 cd04486 YhcR_OBF_like YhcR_OBF 26.7 1.6E+02 0.0034 18.0 4.1 36 16-61 16-54 (78)
211 smart00841 Elong-fact-P_C Elon 26.7 58 0.0013 19.2 1.9 17 47-63 33-49 (56)
212 TIGR01048 lysA diaminopimelate 26.5 1E+02 0.0022 23.9 3.8 32 32-64 339-374 (417)
213 PRK05610 rpsQ 30S ribosomal pr 26.4 38 0.00082 21.5 1.1 12 51-62 53-64 (84)
214 PF05899 Cupin_3: Protein of u 26.3 79 0.0017 18.9 2.5 28 28-62 31-58 (74)
215 PRK08433 flagellar motor switc 26.2 1.5E+02 0.0033 19.7 4.1 46 29-77 33-80 (111)
216 PF13759 2OG-FeII_Oxy_5: Putat 26.2 36 0.00078 21.3 1.0 20 45-64 63-82 (101)
217 cd05794 S1_EF-P_repeat_2 S1_EF 26.1 58 0.0013 19.2 1.8 18 47-64 33-50 (56)
218 PRK08666 5'-methylthioadenosin 26.1 63 0.0014 23.9 2.4 26 31-63 77-103 (261)
219 PTZ00316 profilin; Provisional 25.7 99 0.0021 21.9 3.2 15 66-80 60-74 (150)
220 PRK10377 PTS system glucitol/s 25.6 2.1E+02 0.0047 19.2 4.8 14 65-78 55-68 (120)
221 cd06166 Sortase_D_5 Sortase D 25.5 93 0.002 20.4 2.9 51 31-82 43-94 (126)
222 PF01426 BAH: BAH domain; Int 25.4 66 0.0014 20.1 2.1 14 51-64 2-15 (119)
223 PF12508 DUF3714: Protein of u 25.0 72 0.0016 23.4 2.5 27 12-42 78-104 (200)
224 TIGR03595 Obg_CgtA_exten Obg f 24.9 44 0.00094 20.2 1.1 16 48-63 50-65 (69)
225 cd04466 S1_YloQ_GTPase S1_YloQ 24.8 44 0.00096 19.1 1.1 13 50-62 36-48 (68)
226 TIGR02480 fliN flagellar motor 24.8 1.7E+02 0.0036 17.6 4.0 26 51-76 28-55 (77)
227 TIGR01700 PNPH purine nucleosi 24.7 68 0.0015 23.7 2.3 25 32-63 85-110 (249)
228 KOG0276|consensus 24.7 2.6E+02 0.0057 24.6 6.0 48 12-61 305-354 (794)
229 PF05382 Amidase_5: Bacterioph 24.0 1E+02 0.0022 21.4 3.0 33 51-84 75-107 (145)
230 cd02558 PSRA_1 PSRA_1: Pseudou 24.0 98 0.0021 22.7 3.1 11 51-61 16-26 (246)
231 PF05721 PhyH: Phytanoyl-CoA d 23.9 38 0.00083 22.4 0.8 18 46-63 178-195 (211)
232 PF11213 DUF3006: Protein of u 23.7 98 0.0021 18.6 2.6 14 47-60 29-42 (71)
233 TIGR01697 PNPH-PUNA-XAPA inosi 23.6 80 0.0017 23.2 2.6 27 30-63 83-110 (248)
234 TIGR02219 phage_NlpC_fam putat 23.3 46 0.001 22.2 1.1 12 51-62 76-87 (134)
235 COG3061 OapA Cell envelope opa 23.2 1.1E+02 0.0025 23.2 3.3 32 51-82 199-235 (242)
236 PRK10334 mechanosensitive chan 23.2 1.2E+02 0.0027 23.0 3.6 34 51-84 129-171 (286)
237 TIGR01511 ATPase-IB1_Cu copper 22.9 1.3E+02 0.0028 24.8 3.9 32 27-59 124-158 (562)
238 PF00924 MS_channel: Mechanose 22.8 2E+02 0.0042 19.7 4.3 21 51-71 60-80 (206)
239 COG3794 PetE Plastocyanin [Ene 22.7 86 0.0019 21.5 2.4 13 51-63 57-69 (128)
240 PF02989 DUF228: Lyme disease 22.7 2E+02 0.0042 21.1 4.3 37 13-64 105-141 (184)
241 COG1829 Predicted archaeal kin 22.7 1.3E+02 0.0028 23.4 3.6 50 15-77 11-60 (283)
242 PF09269 DUF1967: Domain of un 22.0 46 0.00099 20.1 0.8 15 49-63 51-65 (69)
243 PRK08983 fliN flagellar motor 21.6 2.2E+02 0.0049 19.3 4.3 46 28-76 51-98 (127)
244 PRK03760 hypothetical protein; 21.3 72 0.0016 21.2 1.8 15 48-62 102-116 (117)
245 TIGR02375 pseudoazurin pseudoa 21.2 51 0.0011 21.9 1.0 20 51-70 18-38 (116)
246 PF13533 Biotin_lipoyl_2: Biot 21.2 59 0.0013 18.1 1.1 9 51-59 23-31 (50)
247 TIGR00849 gutA PTS system, glu 21.1 2.7E+02 0.0059 18.7 4.6 13 65-77 55-67 (121)
248 cd06813 PLPDE_III_DSD_D-TA_lik 21.1 1.2E+02 0.0025 23.8 3.1 37 51-88 342-379 (388)
249 cd06821 PLPDE_III_D-TA Type II 21.0 1.7E+02 0.0037 22.2 4.0 36 51-87 315-351 (361)
250 PF06865 DUF1255: Protein of u 20.9 86 0.0019 20.5 2.0 30 12-41 23-52 (94)
251 TIGR01694 MTAP 5'-deoxy-5'-met 20.8 88 0.0019 22.8 2.3 13 51-63 91-103 (241)
252 PRK12426 elongation factor P; 20.8 1.5E+02 0.0033 21.4 3.5 40 43-82 45-87 (185)
253 cd05828 Sortase_D_4 Sortase D 20.7 1.3E+02 0.0028 19.7 2.9 48 30-82 43-91 (127)
254 PF15436 PGBA_N: Plasminogen-b 20.6 2.9E+02 0.0062 20.7 5.0 53 12-64 26-92 (218)
255 PF07883 Cupin_2: Cupin domain 20.5 98 0.0021 17.2 2.0 29 49-77 38-67 (71)
256 KOG2107|consensus 20.4 1.3E+02 0.0027 22.0 2.9 33 30-62 95-130 (179)
257 PRK11507 ribosome-associated p 20.4 2.1E+02 0.0046 17.6 3.6 15 63-77 54-68 (70)
258 PRK02290 3-dehydroquinate synt 20.4 77 0.0017 25.3 2.0 19 43-61 306-325 (344)
259 PRK08564 5'-methylthioadenosin 20.4 1.1E+02 0.0023 23.2 2.7 13 51-63 99-111 (267)
260 PRK09838 periplasmic copper-bi 20.2 1.6E+02 0.0034 19.7 3.2 23 51-79 88-110 (115)
261 cd00992 PDZ_signaling PDZ doma 20.1 1.9E+02 0.0041 16.4 3.4 39 15-59 13-51 (82)
262 PRK05698 fliN flagellar motor 20.0 2.2E+02 0.0047 20.2 4.0 44 30-76 81-126 (155)
263 PF11963 DUF3477: Protein of u 20.0 44 0.00095 26.6 0.5 30 4-33 24-53 (355)
264 PRK00529 elongation factor P; 20.0 2.2E+02 0.0048 20.2 4.2 44 15-63 120-177 (186)
No 1
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-34 Score=187.13 Aligned_cols=84 Identities=38% Similarity=0.727 Sum_probs=81.0
Q ss_pred cccccceecceeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEEECCEEEEEEecCcEEE
Q psy12488 6 NKLSIYLLFPGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQELHLFKEADLLA 85 (91)
Q Consensus 6 ~k~~~e~~T~~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~DIla 85 (91)
+++++|++|+|||+||++|++|++.|+|||||+|..+.+|+++|++||+||+|+|++|+|+++++||++|++++++||||
T Consensus 13 k~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dgeeylil~e~DILA 92 (96)
T COG0234 13 KRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGEEYLILSESDILA 92 (96)
T ss_pred EEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCEEEEEechHHeeE
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeec
Q psy12488 86 VIEK 89 (91)
Q Consensus 86 vi~~ 89 (91)
++++
T Consensus 93 iv~~ 96 (96)
T COG0234 93 IVEK 96 (96)
T ss_pred EecC
Confidence 9874
No 2
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=99.98 E-value=3.4e-32 Score=177.99 Aligned_cols=83 Identities=40% Similarity=0.731 Sum_probs=79.7
Q ss_pred cccccceecceeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEEECCEEEEEEecCcEEE
Q psy12488 6 NKLSIYLLFPGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQELHLFKEADLLA 85 (91)
Q Consensus 6 ~k~~~e~~T~~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~DIla 85 (91)
++.+.+++|+|||+||+++++|++.|+|+|||||+.+.+|+++|++||+||+|+|++|+|++|++++++|+|+|++||||
T Consensus 13 ~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~~y~iv~~~DIla 92 (95)
T PRK00364 13 KRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGEEYLILRESDILA 92 (95)
T ss_pred EEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEECCEEEEEEEHHHEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eee
Q psy12488 86 VIE 88 (91)
Q Consensus 86 vi~ 88 (91)
+++
T Consensus 93 vi~ 95 (95)
T PRK00364 93 IVE 95 (95)
T ss_pred EeC
Confidence 985
No 3
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=99.97 E-value=3e-31 Score=172.82 Aligned_cols=82 Identities=41% Similarity=0.782 Sum_probs=79.0
Q ss_pred cccccceecceeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEEECCEEEEEEecCcEEE
Q psy12488 6 NKLSIYLLFPGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQELHLFKEADLLA 85 (91)
Q Consensus 6 ~k~~~e~~T~~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~DIla 85 (91)
++.+.+++|+|||+||++++++++.|+|+|||||+.+.+|++.|++|++||+|+|++|+|++|+++|++|+|+|++||||
T Consensus 12 ~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~y~i~~~~DIla 91 (93)
T cd00320 12 KRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEEYLILRESDILA 91 (93)
T ss_pred EEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEEEEEEEHHHEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q psy12488 86 VI 87 (91)
Q Consensus 86 vi 87 (91)
++
T Consensus 92 ~i 93 (93)
T cd00320 92 VI 93 (93)
T ss_pred EC
Confidence 85
No 4
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=171.76 Aligned_cols=78 Identities=42% Similarity=0.726 Sum_probs=73.2
Q ss_pred cccccceecceeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEEECCEEEEEEecCcEEE
Q psy12488 6 NKLSIYLLFPGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQELHLFKEADLLA 85 (91)
Q Consensus 6 ~k~~~e~~T~~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~DIla 85 (91)
++.+++++|+|||+||+++++|+++|+|+|||+|..+ .|++||+||+|+|++|+|++|+++|++|++++++||||
T Consensus 22 k~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~-----~~~~Vk~GD~Vl~~~y~Gtevk~dg~ey~i~~e~DILa 96 (100)
T PTZ00414 22 KRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD-----WTPTVKVGDTVLLPEFGGSSVKVEGEEFFLYNEDSLLG 96 (100)
T ss_pred EEcccccccccCEEcccccccCCceeEEEEECCCCcc-----ccceecCCCEEEEcCCCCcEEEECCEEEEEEEhHHEEE
Confidence 4567899999999999999999999999999999754 48899999999999999999999999999999999999
Q ss_pred Eee
Q psy12488 86 VIE 88 (91)
Q Consensus 86 vi~ 88 (91)
+++
T Consensus 97 vi~ 99 (100)
T PTZ00414 97 VLQ 99 (100)
T ss_pred Eec
Confidence 986
No 5
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=99.97 E-value=2.7e-30 Score=168.32 Aligned_cols=79 Identities=30% Similarity=0.482 Sum_probs=73.7
Q ss_pred cccccceecceeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEEECCEEEEEEecCcEEE
Q psy12488 6 NKLSIYLLFPGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQELHLFKEADLLA 85 (91)
Q Consensus 6 ~k~~~e~~T~~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~DIla 85 (91)
++.+++++|+|||+||+++++|++.|+|+|||+|.. ..|++||+||+|+|++|+|++|+++|++|+|++++||||
T Consensus 13 k~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~~-----~~~~~Vk~GD~Vl~~~y~g~ev~~~~~~y~iv~e~DILa 87 (91)
T PRK14533 13 KPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDD-----EEDFDIKVGDKVIFSKYAGTEIKIDDEDYIIIDVNDILA 87 (91)
T ss_pred EEccccceecccEEecccccCCcceEEEEEECCCCc-----cccccccCCCEEEEccCCCeEEEECCEEEEEEEhHhEEE
Confidence 456788999999999999999999999999999863 568999999999999999999999999999999999999
Q ss_pred Eeec
Q psy12488 86 VIEK 89 (91)
Q Consensus 86 vi~~ 89 (91)
+++|
T Consensus 88 ~i~~ 91 (91)
T PRK14533 88 KIEE 91 (91)
T ss_pred EeeC
Confidence 9975
No 6
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=99.96 E-value=1.9e-29 Score=163.83 Aligned_cols=81 Identities=42% Similarity=0.715 Sum_probs=75.0
Q ss_pred ccccceecceeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEEECCEEEEEEecCcEEEE
Q psy12488 7 KLSIYLLFPGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQELHLFKEADLLAV 86 (91)
Q Consensus 7 k~~~e~~T~~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~DIlav 86 (91)
+.+++++|+|||+||+++++++++|+|||||+|+.+.+|+.+|+.|++||+|+|++|+|++++++|++|+++|++||||+
T Consensus 13 ~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~~~~~~~~dIlav 92 (93)
T PF00166_consen 13 KIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFDGEKYLIVREDDILAV 92 (93)
T ss_dssp ECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEETTEEEEEEEGGGEEEE
T ss_pred EccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEECCEEEEEEEHHHeEEE
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q psy12488 87 I 87 (91)
Q Consensus 87 i 87 (91)
+
T Consensus 93 i 93 (93)
T PF00166_consen 93 I 93 (93)
T ss_dssp E
T ss_pred C
Confidence 6
No 7
>KOG1641|consensus
Probab=99.93 E-value=1.3e-26 Score=153.43 Aligned_cols=82 Identities=43% Similarity=0.766 Sum_probs=77.7
Q ss_pred cccccceecceeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEEECC-EEEEEEecCcEE
Q psy12488 6 NKLSIYLLFPGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEG-QELHLFKEADLL 84 (91)
Q Consensus 6 ~k~~~e~~T~~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~dg-~~y~ii~~~DIl 84 (91)
+|.+++++|+|||+||++++.|.++|+|+|||||.++..|+.+|.+|++||+|||++|+|++|++++ ++|+++|.+|+|
T Consensus 21 qr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt~V~l~~~~~~~~fr~e~~l 100 (104)
T KOG1641|consen 21 QRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGTKVKLGDEDEYHLFRDEDDL 100 (104)
T ss_pred eeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCcEEeccCCceeEEecchhhh
Confidence 5678899999999999999999999999999999999999999999999999999999999999985 699999999999
Q ss_pred EEe
Q psy12488 85 AVI 87 (91)
Q Consensus 85 avi 87 (91)
+.+
T Consensus 101 ~~~ 103 (104)
T KOG1641|consen 101 LAI 103 (104)
T ss_pred hhh
Confidence 875
No 8
>KOG1197|consensus
Probab=93.78 E-value=0.06 Score=41.97 Aligned_cols=27 Identities=41% Similarity=0.478 Sum_probs=23.4
Q ss_pred cceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 27 EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 27 k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
+...|.|+|||.|.. +.++||+|.|-.
T Consensus 70 mEaaGvVvAvG~gvt---------drkvGDrVayl~ 96 (336)
T KOG1197|consen 70 MEAAGVVVAVGEGVT---------DRKVGDRVAYLN 96 (336)
T ss_pred cccceEEEEecCCcc---------ccccccEEEEec
Confidence 567899999999986 589999999854
No 9
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=93.52 E-value=0.078 Score=33.82 Aligned_cols=26 Identities=46% Similarity=0.714 Sum_probs=21.3
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
...|+|+++|++.. .+++||+|....
T Consensus 38 E~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 63 (109)
T PF08240_consen 38 EGVGVVVAVGPGVT---------DFKVGDRVVVSP 63 (109)
T ss_dssp EEEEEEEEESTTTT---------SSGTT-EEEEES
T ss_pred ceeeeeeeeccccc---------cccccceeeeec
Confidence 47899999999875 599999999844
No 10
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.68 E-value=0.15 Score=40.62 Aligned_cols=23 Identities=43% Similarity=0.683 Sum_probs=20.7
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
-.|.|.+||+|.. +||+||+|+.
T Consensus 63 gAGiVe~VG~gVt---------~vkpGDhVI~ 85 (366)
T COG1062 63 GAGIVEAVGEGVT---------SVKPGDHVIL 85 (366)
T ss_pred cccEEEEecCCcc---------ccCCCCEEEE
Confidence 4799999999987 7999999985
No 11
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=91.03 E-value=0.27 Score=27.64 Aligned_cols=34 Identities=29% Similarity=0.640 Sum_probs=23.3
Q ss_pred ceeEEecCCccc--cceeEEEEEEcC-CeeCCCCeEe
Q psy12488 15 PGGVLIPEKAQQ--EVNNAVVVAVGP-GARTPNGEYI 48 (91)
Q Consensus 15 ~~GI~LP~~~~~--k~~~G~VVAVG~-G~~~~~G~~~ 48 (91)
.|||+.|+...- ..-.+.|+.+|| |....||+.+
T Consensus 2 ~SGii~~dG~~~q~~~~~a~ivl~GpSG~v~sdG~nv 38 (40)
T PF08140_consen 2 PSGIITPDGTNVQFPHGVANIVLIGPSGAVLSDGKNV 38 (40)
T ss_pred CCceECCCCCEEECCcccceEEEECCceEEeeCCcEe
Confidence 489999998643 223337999999 6666666543
No 12
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=89.60 E-value=0.49 Score=36.29 Aligned_cols=43 Identities=35% Similarity=0.431 Sum_probs=30.2
Q ss_pred cceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC-CCceEEEECC--EEEEEEecCcE
Q psy12488 27 EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK-FGGTKIEVEG--QELHLFKEADL 83 (91)
Q Consensus 27 k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~-y~g~ev~~dg--~~y~ii~~~DI 83 (91)
.-..|+|+|||++.. ..++||+|++.. .. .+| -+|..+.++.+
T Consensus 63 ~d~aG~V~avG~~V~---------~~~~GdrV~~~~~~~-----~~G~~AEy~~v~a~~~ 108 (326)
T COG0604 63 SEAAGVVVAVGSGVT---------GFKVGDRVAALGGVG-----RDGGYAEYVVVPADWL 108 (326)
T ss_pred ceeEEEEEEeCCCCC---------CcCCCCEEEEccCCC-----CCCcceeEEEecHHHc
Confidence 357899999999886 359999999984 21 122 56666666443
No 13
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.32 E-value=0.56 Score=34.27 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCeeC-CCCeEecCcccCCCEEEcCC
Q psy12488 29 NNAVVVAVGPGART-PNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 29 ~~G~VVAVG~G~~~-~~G~~~p~~VkvGD~Vlf~~ 62 (91)
..|+|+++|++... ..|. .+++||+|....
T Consensus 6 ~~G~V~~vG~~v~~~~~~~----~~~~GdrV~~~~ 36 (280)
T TIGR03366 6 IVGEVVALRGGFTPADDGV----PLRLGQRVVWSV 36 (280)
T ss_pred cceEEEEeCCCccccccCC----CCCCCCEEEEcC
Confidence 57999999998641 1121 489999998754
No 14
>KOG0025|consensus
Probab=87.06 E-value=1.5 Score=34.80 Aligned_cols=43 Identities=26% Similarity=0.202 Sum_probs=29.3
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC-CCce---EEEECCEEEEEEe
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK-FGGT---KIEVEGQELHLFK 79 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~-y~g~---ev~~dg~~y~ii~ 79 (91)
.-.|+||+||++.. .+|+||+|+-.. --|+ +..+++.+++-+.
T Consensus 84 EGv~eVv~vGs~vk---------gfk~Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd 130 (354)
T KOG0025|consen 84 EGVGEVVAVGSNVK---------GFKPGDWVIPLSANLGTWRTEAVFSESDLIKVD 130 (354)
T ss_pred cceEEEEEecCCcC---------ccCCCCeEeecCCCCccceeeEeecccceEEcC
Confidence 46899999999765 499999999765 3354 3344555444443
No 15
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=86.39 E-value=2.7 Score=31.03 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=35.1
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCC-------ceEEEECCEEEEEEecCcE
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG-------GTKIEVEGQELHLFKEADL 83 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~-------g~ev~~dg~~y~ii~~~DI 83 (91)
...|.||++= ++.+.|+-++.||+|+|..++ |..|.++-+.|.+....++
T Consensus 78 rShgviv~~~------~~syR~~GL~aGeT~iY~~eG~~i~Lteg~~Ie~~ck~~~v~a~~~v 134 (203)
T COG4384 78 RSHGVIVVSQ------HGSYRITGLKAGETVIYNHEGAKIVLTEGGIIEADCKTLTVNAATGV 134 (203)
T ss_pred cceeEEEEec------CCccccccccCCceEEEeccCcEEEEccCcEEEEeccEEEEecCCce
Confidence 4455555554 566688899999999999876 4556677777776555443
No 16
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=86.20 E-value=0.86 Score=35.52 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.3
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|.+.
T Consensus 68 E~~G~V~~vG~~V~---------~~~vGdrV~~~ 92 (393)
T TIGR02819 68 EITGEVIEKGRDVE---------FIKIGDIVSVP 92 (393)
T ss_pred eeEEEEEEEcCccc---------cccCCCEEEEe
Confidence 36999999999875 59999999875
No 17
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=84.41 E-value=6.7 Score=27.88 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=26.5
Q ss_pred eEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCC
Q psy12488 17 GVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG 64 (91)
Q Consensus 17 GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~ 64 (91)
+|+||-. -+...+.|+|+..++ +.|-.+++|+.++|.+.+
T Consensus 48 ~vvl~lG--G~rs~~Vvia~~d~~------yR~~~L~~GEvalY~~~G 87 (162)
T PF06890_consen 48 AVVLFLG--GDRSHGVVIAVEDRR------YRPKGLKPGEVALYDDEG 87 (162)
T ss_pred EEEEEec--cCCcceEEEEeCCcc------ccccCCCCCcEEEEcCCC
Confidence 3555533 234567777776544 455679999999999765
No 18
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=83.10 E-value=1.2 Score=33.50 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=19.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++ . .+++||+|+..
T Consensus 64 e~~G~V~~vG~~-~---------~~~vGdrV~~~ 87 (355)
T cd08230 64 EALGVVEEVGDG-S---------GLSPGDLVVPT 87 (355)
T ss_pred ccceEEEEecCC-C---------CCCCCCEEEec
Confidence 357999999997 4 58999999864
No 19
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=83.08 E-value=1.2 Score=35.11 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=21.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|++||++.. .+|+||+|-..
T Consensus 64 EivG~V~~vG~~V~---------~~k~GDrVgV~ 88 (339)
T COG1064 64 EIVGTVVEVGEGVT---------GLKVGDRVGVG 88 (339)
T ss_pred ceEEEEEEecCCCc---------cCCCCCEEEec
Confidence 57899999999886 59999999983
No 20
>KOG0022|consensus
Probab=81.90 E-value=1.4 Score=35.24 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.5
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEE
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVL 59 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vl 59 (91)
...|.|.+||+|.. .|++||+|+
T Consensus 68 EaaGIVESvGegV~---------~vk~GD~Vi 90 (375)
T KOG0022|consen 68 EAAGIVESVGEGVT---------TVKPGDHVI 90 (375)
T ss_pred cceeEEEEecCCcc---------ccCCCCEEe
Confidence 35899999999986 699999998
No 21
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=80.59 E-value=1.9 Score=32.88 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.0
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|++
T Consensus 73 E~~G~V~~vG~~v~---------~~~vGdrV~~ 96 (360)
T PLN02586 73 EIVGIVTKLGKNVK---------KFKEGDRVGV 96 (360)
T ss_pred ceeEEEEEECCCCC---------ccCCCCEEEE
Confidence 36899999999764 5899999984
No 22
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=78.33 E-value=2.2 Score=32.38 Aligned_cols=24 Identities=46% Similarity=0.674 Sum_probs=20.0
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|+.
T Consensus 68 E~~G~V~~vG~~v~---------~~~~GdrV~~ 91 (371)
T cd08281 68 EAAGVVVEVGEGVT---------DLEVGDHVVL 91 (371)
T ss_pred cceeEEEEeCCCCC---------cCCCCCEEEE
Confidence 36799999998764 4899999986
No 23
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=78.03 E-value=2.5 Score=31.49 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=20.5
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~---------~~~vGd~V~~~ 84 (347)
T PRK10309 60 EFSGYVEAVGSGVD---------DLHPGDAVACV 84 (347)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEC
Confidence 46899999998764 58999999864
No 24
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=77.72 E-value=2.4 Score=31.84 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=20.7
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|++.
T Consensus 63 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 87 (329)
T TIGR02822 63 EVVGEVAGRGADAG---------GFAVGDRVGIA 87 (329)
T ss_pred ceEEEEEEECCCCc---------ccCCCCEEEEc
Confidence 46899999999864 58999999853
No 25
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=77.56 E-value=2.8 Score=31.10 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=29.3
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCc-eEE-EECC--EEEEEEecCcEE
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGG-TKI-EVEG--QELHLFKEADLL 84 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g-~ev-~~dg--~~y~ii~~~DIl 84 (91)
...|+|+++|++. .+++||+|+...... ... ..+| .+|+++.++.++
T Consensus 65 E~~G~V~~vG~~v----------~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~ 115 (308)
T TIGR01202 65 ESVGRVVEAGPDT----------GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVC 115 (308)
T ss_pred eeEEEEEEecCCC----------CCCCCCEEEEeCccccccccccCCcccceEEcCHHHce
Confidence 3689999999863 379999999632100 000 0122 588888776543
No 26
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=77.42 E-value=2.7 Score=32.43 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.1
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|.+
T Consensus 67 E~aG~Vv~vG~~v~---------~~~vGdrV~~ 90 (375)
T PLN02178 67 EIVGIATKVGKNVT---------KFKEGDRVGV 90 (375)
T ss_pred eeeEEEEEECCCCC---------ccCCCCEEEE
Confidence 46899999999764 5899999985
No 27
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=77.35 E-value=4 Score=25.74 Aligned_cols=30 Identities=37% Similarity=0.562 Sum_probs=20.0
Q ss_pred ccCCCEEEcCCCCce------EEEECC--EEEEEEecC
Q psy12488 52 VNVGDKVLLPKFGGT------KIEVEG--QELHLFKEA 81 (91)
Q Consensus 52 VkvGD~Vlf~~y~g~------ev~~dg--~~y~ii~~~ 81 (91)
+++||.|+++.++-. +.++.| .+|+++...
T Consensus 2 f~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~~ 39 (98)
T PF02559_consen 2 FKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEYA 39 (98)
T ss_dssp --TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEEC
T ss_pred CCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEEC
Confidence 589999999999842 344555 578777643
No 28
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=77.15 E-value=4 Score=29.38 Aligned_cols=38 Identities=26% Similarity=0.529 Sum_probs=25.8
Q ss_pred CcccCCCEEEcCCCCceEE------EECC--EEEEEEe--cCcEEEEe
Q psy12488 50 PVVNVGDKVLLPKFGGTKI------EVEG--QELHLFK--EADLLAVI 87 (91)
Q Consensus 50 ~~VkvGD~Vlf~~y~g~ev------~~dg--~~y~ii~--~~DIlavi 87 (91)
+..++||+|+||.++.-.| ++.| .+|++|. .+|....+
T Consensus 3 ~~Fk~Gd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v~V 50 (166)
T COG1329 3 MAFKIGDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQSDMTVMV 50 (166)
T ss_pred ccccCCCEEEecCCCceeeehhhhHhhcCceeEEEEEEEcCCCcEEEe
Confidence 5789999999999985333 2444 5777764 45555544
No 29
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=76.94 E-value=2.5 Score=31.96 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.1
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
..|+|+++|++.. .+++||+|+..
T Consensus 64 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 87 (369)
T cd08301 64 AAGIVESVGEGVT---------DLKPGDHVLPV 87 (369)
T ss_pred cceEEEEeCCCCC---------ccccCCEEEEc
Confidence 5799999999764 58999999863
No 30
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=76.53 E-value=7 Score=29.40 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=29.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCc-----------------eEEEECC--EEEEEEecCcE
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGG-----------------TKIEVEG--QELHLFKEADL 83 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g-----------------~ev~~dg--~~y~ii~~~DI 83 (91)
...|+|+++|.+ .+++||+|.+..... .-..++| -+|++++++.+
T Consensus 65 E~~G~V~~~g~~-----------~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~ 128 (341)
T cd08237 65 EGIGVVVSDPTG-----------TYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRL 128 (341)
T ss_pred eeEEEEEeeCCC-----------ccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHe
Confidence 478999998752 389999998754211 0012345 68998887654
No 31
>PLN02827 Alcohol dehydrogenase-like
Probab=75.86 E-value=2.6 Score=32.40 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.4
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
..|+|+++|++.. .+++||+|+..
T Consensus 71 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 94 (378)
T PLN02827 71 ASGIVESIGEGVT---------EFEKGDHVLTV 94 (378)
T ss_pred ceEEEEEcCCCCc---------ccCCCCEEEEe
Confidence 5799999999764 58999999864
No 32
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=75.84 E-value=3.2 Score=30.62 Aligned_cols=25 Identities=24% Similarity=0.085 Sum_probs=20.6
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|++-
T Consensus 75 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 99 (345)
T cd08293 75 DGGGVGVVEESKHQ---------KFAVGDIVTSF 99 (345)
T ss_pred EeeEEEEEeccCCC---------CCCCCCEEEec
Confidence 47799999998763 58999999863
No 33
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=75.56 E-value=7.2 Score=27.98 Aligned_cols=26 Identities=42% Similarity=0.529 Sum_probs=20.7
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
...|+|+++|++.. ..++||+|+.-.
T Consensus 58 e~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 83 (312)
T cd08269 58 EGWGRVVALGPGVR---------GLAVGDRVAGLS 83 (312)
T ss_pred eeEEEEEEECCCCc---------CCCCCCEEEEec
Confidence 35799999998754 478999999744
No 34
>KOG0024|consensus
Probab=75.28 E-value=1.2 Score=35.42 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.7
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
...|.|..||++.. .+|+||+|...+
T Consensus 68 EssGiV~evG~~Vk---------~LkVGDrVaiEp 93 (354)
T KOG0024|consen 68 ESSGIVEEVGDEVK---------HLKVGDRVAIEP 93 (354)
T ss_pred ccccchhhhccccc---------ccccCCeEEecC
Confidence 46899999999987 699999999854
No 35
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=75.22 E-value=3.2 Score=30.72 Aligned_cols=26 Identities=46% Similarity=0.710 Sum_probs=21.0
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
...|+|+++|++.. .+++||+|+...
T Consensus 61 e~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 86 (339)
T cd08239 61 EPAGVVVAVGPGVT---------HFRVGDRVMVYH 86 (339)
T ss_pred CceEEEEEECCCCc---------cCCCCCEEEECC
Confidence 35799999999764 589999998643
No 36
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=75.09 E-value=3.2 Score=31.62 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=20.7
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|...
T Consensus 62 E~~G~V~~vG~~v~---------~~~~GdrV~~~ 86 (368)
T TIGR02818 62 EGAGIVEAVGEGVT---------SVKVGDHVIPL 86 (368)
T ss_pred ccEEEEEEECCCCc---------cCCCCCEEEEc
Confidence 36799999999764 58999999864
No 37
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=74.65 E-value=3.5 Score=31.95 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=20.2
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
..|+|+++|++... .+++||+|+..
T Consensus 70 ~~G~V~~vG~~v~~--------~~~vGdrV~~~ 94 (410)
T cd08238 70 FAGTILKVGKKWQG--------KYKPGQRFVIQ 94 (410)
T ss_pred cEEEEEEeCCCccC--------CCCCCCEEEEc
Confidence 58999999997631 38999999875
No 38
>PLN02740 Alcohol dehydrogenase-like
Probab=74.33 E-value=3.2 Score=31.71 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=20.4
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 72 E~~G~V~~vG~~v~---------~~~vGdrV~~~ 96 (381)
T PLN02740 72 EAAGIVESVGEGVE---------DLKAGDHVIPI 96 (381)
T ss_pred cceEEEEEeCCCCC---------cCCCCCEEEec
Confidence 35799999998764 58999999864
No 39
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=73.83 E-value=3.8 Score=31.03 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=20.5
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 63 E~~G~V~~vG~~v~---------~~~vGdrV~~~ 87 (368)
T cd08300 63 EGAGIVESVGEGVT---------SVKPGDHVIPL 87 (368)
T ss_pred ceeEEEEEeCCCCc---------cCCCCCEEEEc
Confidence 36899999999764 58999999864
No 40
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=73.34 E-value=4 Score=30.74 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=20.1
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|..
T Consensus 61 e~~G~V~~vG~~v~---------~~~~GdrV~~ 84 (358)
T TIGR03451 61 EAAGVVEAVGEGVT---------DVAPGDYVVL 84 (358)
T ss_pred ceEEEEEEeCCCCc---------ccCCCCEEEE
Confidence 36899999999764 5899999986
No 41
>PRK10083 putative oxidoreductase; Provisional
Probab=73.19 E-value=4.3 Score=29.90 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=19.9
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
..|+|+++|++.. .+++||+|+..
T Consensus 61 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 84 (339)
T PRK10083 61 FFGVIDAVGEGVD---------AARIGERVAVD 84 (339)
T ss_pred eEEEEEEECCCCc---------cCCCCCEEEEc
Confidence 5799999998753 58999999854
No 42
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=72.86 E-value=3.8 Score=31.03 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=19.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|++
T Consensus 70 E~~G~Vv~vG~~v~---------~~~~Gd~V~~ 93 (357)
T PLN02514 70 EVVGEVVEVGSDVS---------KFTVGDIVGV 93 (357)
T ss_pred eeeEEEEEECCCcc---------cccCCCEEEE
Confidence 46799999999764 5899999985
No 43
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=71.83 E-value=4.4 Score=30.69 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=20.4
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~GdrV~~~ 86 (365)
T cd08277 62 EGAGIVESVGEGVT---------NLKPGDKVIPL 86 (365)
T ss_pred ceeEEEEeeCCCCc---------cCCCCCEEEEC
Confidence 36899999998764 48899999864
No 44
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=71.45 E-value=8.6 Score=28.35 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=15.4
Q ss_pred eCCCCeEecC-cccCCCEEEcCCCCc
Q psy12488 41 RTPNGEYIKP-VVNVGDKVLLPKFGG 65 (91)
Q Consensus 41 ~~~~G~~~p~-~VkvGD~Vlf~~y~g 65 (91)
.+.+|..++| ++++||+|+--+-.|
T Consensus 20 ~~~~G~~k~m~~L~iGD~Vla~d~~G 45 (217)
T PF01079_consen 20 TLEDGGRKRMSDLKIGDRVLAVDSDG 45 (217)
T ss_dssp EBTTS-EEEGGG--TT-EEEEE-TTS
T ss_pred EeCCCCEeEHHHCCCCCEEEEecCCC
Confidence 3468877788 999999999988444
No 45
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=70.59 E-value=4.6 Score=30.06 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=19.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|+.
T Consensus 71 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 94 (351)
T cd08233 71 EFSGVVVEVGSGVT---------GFKVGDRVVV 94 (351)
T ss_pred cceEEEEEeCCCCC---------CCCCCCEEEE
Confidence 36799999998654 5899999986
No 46
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=70.37 E-value=5.3 Score=29.61 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=20.4
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 86 (340)
T TIGR00692 62 EVAGEVVGIGPGVE---------GIKVGDYVSVE 86 (340)
T ss_pred ceEEEEEEECCCCC---------cCCCCCEEEEC
Confidence 36899999998753 58999999874
No 47
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=69.54 E-value=5.8 Score=28.92 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=20.3
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 61 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 85 (325)
T cd08264 61 EFAGVVEEVGDHVK---------GVKKGDRVVVY 85 (325)
T ss_pred ceeEEEEEECCCCC---------CCCCCCEEEEC
Confidence 36799999998764 58999999854
No 48
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=69.35 E-value=6 Score=28.64 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=20.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
...|+|+++|++.. .+++||+|+...
T Consensus 65 e~~G~V~~~G~~v~---------~~~~Gd~V~~~~ 90 (324)
T cd08292 65 EAVGVVDAVGEGVK---------GLQVGQRVAVAP 90 (324)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEecc
Confidence 46899999998653 489999998753
No 49
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=68.98 E-value=6.1 Score=29.04 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=19.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|+.
T Consensus 61 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 84 (347)
T cd05278 61 EFVGEVVEVGSDVK---------RLKPGDRVSV 84 (347)
T ss_pred ceEEEEEEECCCcc---------ccCCCCEEEe
Confidence 36899999998754 4899999996
No 50
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=68.57 E-value=6.3 Score=28.83 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=20.3
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+.-
T Consensus 65 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 89 (336)
T TIGR02817 65 DAAGVVVAVGDEVT---------LFKPGDEVWYA 89 (336)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 46899999998753 58899999863
No 51
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=67.96 E-value=6.7 Score=28.85 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=20.2
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++... .+++||+|+..
T Consensus 67 e~~G~V~~vG~~v~~--------~~~vGd~V~~~ 92 (324)
T cd08291 67 EGSGTVVAAGGGPLA--------QSLIGKRVAFL 92 (324)
T ss_pred ceEEEEEEECCCccc--------cCCCCCEEEec
Confidence 468999999987631 27899999863
No 52
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.74 E-value=6.4 Score=29.05 Aligned_cols=24 Identities=33% Similarity=0.309 Sum_probs=19.5
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|.|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (345)
T cd08287 60 EFVGVVEEVGSEVT---------SVKPGDFVIA 83 (345)
T ss_pred ceEEEEEEeCCCCC---------ccCCCCEEEe
Confidence 35799999998653 5899999985
No 53
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=66.76 E-value=6.3 Score=29.84 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=19.6
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|+.
T Consensus 62 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 85 (365)
T cd08278 62 EGAGVVEAVGSAVT---------GLKPGDHVVL 85 (365)
T ss_pred ceeEEEEEeCCCcc---------cCCCCCEEEE
Confidence 46899999998653 5899999983
No 54
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=66.62 E-value=7.1 Score=28.71 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=19.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. ..++||+|+.
T Consensus 60 ~~~G~V~~~G~~v~---------~~~~Gd~V~~ 83 (343)
T cd08235 60 EIAGEIVEVGDGVT---------GFKVGDRVFV 83 (343)
T ss_pred ceEEEEEeeCCCCC---------CCCCCCEEEE
Confidence 46899999998753 5899999995
No 55
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=66.19 E-value=7.1 Score=27.04 Aligned_cols=26 Identities=46% Similarity=0.710 Sum_probs=20.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
...|+|+++|+... .+++||+|+...
T Consensus 36 e~~G~v~~~G~~v~---------~~~~Gd~V~~~~ 61 (271)
T cd05188 36 EGAGVVVEVGPGVT---------GVKVGDRVVVLP 61 (271)
T ss_pred ccEEEEEEECCCCC---------cCCCCCEEEEcC
Confidence 46799999998543 589999999754
No 56
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=65.54 E-value=7.8 Score=28.55 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=20.4
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 59 ~~~G~V~~~g~~v~---------~~~~Gd~V~~~ 83 (343)
T cd08236 59 EFSGTVEEVGSGVD---------DLAVGDRVAVN 83 (343)
T ss_pred ceEEEEEEECCCCC---------cCCCCCEEEEc
Confidence 46899999998653 58999999864
No 57
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=65.46 E-value=7.7 Score=28.66 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=19.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|.|+++|++.. .+++||+|+.
T Consensus 61 e~~G~V~~~G~~~~---------~~~~Gd~V~~ 84 (345)
T cd08260 61 EFAGVVVEVGEDVS---------RWRVGDRVTV 84 (345)
T ss_pred ceeEEEEEECCCCc---------cCCCCCEEEE
Confidence 36799999998653 5899999986
No 58
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=65.24 E-value=7.5 Score=28.62 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=19.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~~G~~v~---------~~~~Gd~V~~ 83 (337)
T cd08261 60 ELSGEVVEVGEGVA---------GLKVGDRVVV 83 (337)
T ss_pred ccEEEEEEeCCCCC---------CCCCCCEEEE
Confidence 46799999998653 4899999996
No 59
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=65.11 E-value=7.8 Score=28.51 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=20.1
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCc-ccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPV-VNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~-VkvGD~Vlf~ 61 (91)
...|+|+++|++.. . +++||+|+.-
T Consensus 70 e~~G~V~~vG~~v~---------~~~~~Gd~V~~~ 95 (341)
T cd08262 70 EFCGEVVDYGPGTE---------RKLKVGTRVTSL 95 (341)
T ss_pred ceeEEEEEeCCCCc---------CCCCCCCEEEec
Confidence 35799999998653 3 8899999965
No 60
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=65.06 E-value=7.8 Score=28.43 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=19.4
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
..|+|+++|++.. .+++||+|+.-
T Consensus 65 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 88 (340)
T cd05284 65 NAGWVEEVGSGVD---------GLKEGDPVVVH 88 (340)
T ss_pred eeEEEEEeCCCCC---------cCcCCCEEEEc
Confidence 5799999998653 58999999853
No 61
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=64.91 E-value=12 Score=26.69 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=20.8
Q ss_pred cceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 27 EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 27 k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
-...|.|+++|++.. ..++||+|+..
T Consensus 26 ~e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 51 (277)
T cd08255 26 YSSVGRVVEVGSGVT---------GFKPGDRVFCF 51 (277)
T ss_pred cceeEEEEEeCCCCC---------CCCCCCEEEec
Confidence 357899999998653 47899999875
No 62
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.69 E-value=7.2 Score=29.03 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=20.5
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 84 (351)
T cd08285 60 EAVGVVEEVGSEVK---------DFKPGDRVIVP 84 (351)
T ss_pred ceEEEEEEecCCcC---------ccCCCCEEEEc
Confidence 46899999998753 58999999964
No 63
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=64.49 E-value=7.7 Score=28.67 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=19.7
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
..|+|+++|++.. ..++||+|+..
T Consensus 62 ~~G~V~~~G~~v~---------~~~~Gd~V~~~ 85 (345)
T cd08286 62 GVGVVEEVGSAVT---------NFKVGDRVLIS 85 (345)
T ss_pred ceEEEEEeccCcc---------ccCCCCEEEEC
Confidence 5899999998753 48999999863
No 64
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=64.02 E-value=8.5 Score=28.30 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=19.7
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|.|+++|++.. ..++||+|+.
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (344)
T cd08284 60 EFVGEVVEVGPEVR---------TLKVGDRVVS 83 (344)
T ss_pred ceEEEEEeeCCCcc---------ccCCCCEEEE
Confidence 35799999998753 5899999986
No 65
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=63.30 E-value=8 Score=28.44 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=19.3
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
..|+|+++|++.. ..++||+|+.
T Consensus 61 ~~G~v~~vG~~v~---------~~~~Gd~V~~ 83 (339)
T cd08232 61 VSGVVEAVGPGVT---------GLAPGQRVAV 83 (339)
T ss_pred ceEEEEeeCCCCC---------cCCCCCEEEE
Confidence 5799999998653 5899999986
No 66
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=63.18 E-value=8.4 Score=29.48 Aligned_cols=25 Identities=44% Similarity=0.696 Sum_probs=20.2
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 61 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 85 (386)
T cd08283 61 EFMGVVEEVGPEVR---------NLKVGDRVVVP 85 (386)
T ss_pred cceEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 46899999998653 58999999864
No 67
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=62.84 E-value=9.5 Score=28.06 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.3
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 86 (306)
T cd08258 62 EFSGTIVEVGPDVE---------GWKVGDRVVSE 86 (306)
T ss_pred ceEEEEEEECCCcC---------cCCCCCEEEEc
Confidence 36799999998654 58999999874
No 68
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=62.57 E-value=9.2 Score=28.92 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=19.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~Vv~~ 84 (365)
T cd05279 60 EGAGIVESIGPGVT---------TLKPGDKVIPL 84 (365)
T ss_pred ceeEEEEEeCCCcc---------cCCCCCEEEEc
Confidence 36799999998653 57899999864
No 69
>PLN02702 L-idonate 5-dehydrogenase
Probab=62.37 E-value=8.5 Score=28.91 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=19.5
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|+.
T Consensus 80 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 103 (364)
T PLN02702 80 ECAGIIEEVGSEVK---------HLVVGDRVAL 103 (364)
T ss_pred ceeEEEEEECCCCC---------CCCCCCEEEE
Confidence 35799999998653 4789999986
No 70
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=62.05 E-value=9.6 Score=29.29 Aligned_cols=53 Identities=26% Similarity=0.230 Sum_probs=34.6
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCC----------ce----E--------E---EECC--EEEEEEec
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG----------GT----K--------I---EVEG--QELHLFKE 80 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~----------g~----e--------v---~~dg--~~y~ii~~ 80 (91)
...|+|+++| ... ..++||+|.....- |. + . -++| -||+.++.
T Consensus 62 E~~G~V~evG-~~~---------~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~ 131 (350)
T COG1063 62 EFVGEVVEVG-VVR---------GFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPA 131 (350)
T ss_pred cceEEEEEec-ccc---------CCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEecc
Confidence 3689999999 433 58889999887422 11 1 0 0344 68888888
Q ss_pred CcEEEEeecC
Q psy12488 81 ADLLAVIEKD 90 (91)
Q Consensus 81 ~DIlavi~~~ 90 (91)
+..+.++.++
T Consensus 132 ~~~~~~~pd~ 141 (350)
T COG1063 132 DFNLAKLPDG 141 (350)
T ss_pred ccCeecCCCC
Confidence 7777766543
No 71
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=62.02 E-value=9.8 Score=27.49 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=19.4
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|.|+++|++.. .+++||+|+-
T Consensus 65 e~~G~v~~vG~~v~---------~~~~Gd~V~~ 88 (334)
T PTZ00354 65 EVAGYVEDVGSDVK---------RFKEGDRVMA 88 (334)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEE
Confidence 46899999998653 5789999985
No 72
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=61.92 E-value=15 Score=24.87 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=22.8
Q ss_pred ecCcccCCCEEEcCC-CCceEEEECC-EEEEEE
Q psy12488 48 IKPVVNVGDKVLLPK-FGGTKIEVEG-QELHLF 78 (91)
Q Consensus 48 ~p~~VkvGD~Vlf~~-y~g~ev~~dg-~~y~ii 78 (91)
.|..+++||.++|++ +.|+.-..+. .+++++
T Consensus 82 e~v~~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~ 114 (116)
T COG3450 82 EPVEVRAGDSFVFPAGFKGTWEVLETVRKHYVI 114 (116)
T ss_pred eEEEEcCCCEEEECCCCeEEEEEeeeeEEEEEE
Confidence 467999999999998 8887655554 344444
No 73
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=61.72 E-value=9.9 Score=27.90 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=20.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
...|.|+++|++.. ..++||+|+...
T Consensus 70 e~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 95 (341)
T cd08290 70 EGVGEVVKVGSGVK---------SLKPGDWVIPLR 95 (341)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEecC
Confidence 46899999998753 589999999654
No 74
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=61.32 E-value=8.9 Score=28.87 Aligned_cols=24 Identities=46% Similarity=0.666 Sum_probs=19.7
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. ..++||+|+.
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (363)
T cd08279 60 EGAGVVEEVGPGVT---------GVKPGDHVVL 83 (363)
T ss_pred cceEEEEEeCCCcc---------ccCCCCEEEE
Confidence 35799999998653 5899999987
No 75
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=61.21 E-value=9.7 Score=28.22 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=19.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|++
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (337)
T cd05283 60 EIVGIVVAVGSKVT---------KFKVGDRVGV 83 (337)
T ss_pred ceeeEEEEECCCCc---------ccCCCCEEEE
Confidence 46899999998754 5899999974
No 76
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=60.48 E-value=11 Score=27.88 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=19.8
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
..|+|+++|++.. .+++||+|+..
T Consensus 65 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 88 (341)
T PRK05396 65 FVGEVVEVGSEVT---------GFKVGDRVSGE 88 (341)
T ss_pred eEEEEEEeCCCCC---------cCCCCCEEEEC
Confidence 5899999998754 58999999864
No 77
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=60.13 E-value=9.7 Score=28.44 Aligned_cols=30 Identities=37% Similarity=0.488 Sum_probs=20.8
Q ss_pred ceeEEEEEEcCCeeC-CCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGART-PNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~-~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++... .+| ..+++||+|+..
T Consensus 61 e~~G~V~~vG~~v~~~~~~----~~~~~Gd~V~~~ 91 (361)
T cd08231 61 EGVGRVVALGGGVTTDVAG----EPLKVGDRVTWS 91 (361)
T ss_pred CCceEEEEeCCCccccccC----CccCCCCEEEEc
Confidence 357999999987531 001 138999999865
No 78
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=59.85 E-value=10 Score=26.28 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=20.3
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+.-
T Consensus 30 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 54 (288)
T smart00829 30 ECAGVVTRVGPGVT---------GLAVGDRVMGL 54 (288)
T ss_pred eeEEEEEeeCCCCc---------CCCCCCEEEEE
Confidence 46899999998653 57899999974
No 79
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=59.47 E-value=11 Score=28.68 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=19.6
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (375)
T cd08282 60 EAMGEVEEVGSAVE---------SLKVGDRVVV 83 (375)
T ss_pred ccEEEEEEeCCCCC---------cCCCCCEEEE
Confidence 46899999998653 5899999986
No 80
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=59.35 E-value=11 Score=27.63 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=19.8
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
..|.|+++|++.. .+++||+|+..
T Consensus 85 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 108 (350)
T cd08274 85 IVGRVVAVGEGVD---------TARIGERVLVD 108 (350)
T ss_pred ceEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 5799999998763 48999999863
No 81
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=59.23 E-value=11 Score=27.90 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=19.6
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|+... .+++||+|+.
T Consensus 61 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 84 (343)
T cd05285 61 ESAGTVVAVGSGVT---------HLKVGDRVAI 84 (343)
T ss_pred ceeEEEEeeCCCCC---------CCCCCCEEEE
Confidence 46899999998543 5899999985
No 82
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=59.11 E-value=12 Score=27.06 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+.-
T Consensus 61 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 85 (332)
T cd08259 61 EIVGTVEEVGEGVE---------RFKPGDRVILY 85 (332)
T ss_pred cceEEEEEECCCCc---------cCCCCCEEEEC
Confidence 36799999998653 58899999853
No 83
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=59.02 E-value=12 Score=27.25 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=20.0
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. .+++||+|++.
T Consensus 64 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 88 (327)
T PRK10754 64 EAAGVVSKVGSGVK---------HIKVGDRVVYA 88 (327)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEC
Confidence 36799999998754 57899999863
No 84
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=58.99 E-value=13 Score=27.60 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=25.6
Q ss_pred CCCeEecCcccCCCEEEcCCCCc-eEEEECCEEEEE
Q psy12488 43 PNGEYIKPVVNVGDKVLLPKFGG-TKIEVEGQELHL 77 (91)
Q Consensus 43 ~~G~~~p~~VkvGD~Vlf~~y~g-~ev~~dg~~y~i 77 (91)
.+|+.+-+.++.||.++.+++-| ..+...++.+.|
T Consensus 121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf 156 (209)
T COG2140 121 PEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVF 156 (209)
T ss_pred CCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEE
Confidence 56888888999999999999666 444554444443
No 85
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=58.86 E-value=12 Score=28.53 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=19.9
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
..|+|+++|++.. .+++||+|+..
T Consensus 89 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 112 (393)
T cd08246 89 ASGIVWAVGEGVK---------NWKVGDEVVVH 112 (393)
T ss_pred eEEEEEEeCCCCC---------cCCCCCEEEEe
Confidence 5799999998753 58899999864
No 86
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=58.58 E-value=12 Score=27.79 Aligned_cols=25 Identities=56% Similarity=0.610 Sum_probs=20.0
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+.-
T Consensus 73 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 97 (350)
T cd08240 73 EIVGEVVAVGPDAA---------DVKVGDKVLVY 97 (350)
T ss_pred ceeEEEEeeCCCCC---------CCCCCCEEEEC
Confidence 46899999998753 58999999853
No 87
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=57.90 E-value=11 Score=26.96 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=19.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 64 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (342)
T cd08266 64 DGAGVVEAVGPGVT---------NVKPGQRVVIY 88 (342)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 35799999998653 57899999864
No 88
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=57.77 E-value=29 Score=25.47 Aligned_cols=24 Identities=50% Similarity=0.735 Sum_probs=19.2
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. ..++||+|+.
T Consensus 63 e~~G~V~~vG~~~~---------~~~~Gd~V~~ 86 (341)
T cd08297 63 EGAGVVVAVGPGVS---------GLKVGDRVGV 86 (341)
T ss_pred ccceEEEEeCCCCC---------CCCCCCEEEE
Confidence 35799999998653 5789999985
No 89
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=57.67 E-value=3.1 Score=30.24 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=22.2
Q ss_pred ceeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 15 PGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 15 ~~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
..|+-||.++.+-...|+-|. ..++++||.|+|..
T Consensus 105 ~~Gi~LPr~t~~Q~~~g~~V~-------------~~~lqpGDLVfF~~ 139 (190)
T PRK10838 105 QFGLELPRSTYEQQEMGKSVS-------------RSKLRTGDLVLFRA 139 (190)
T ss_pred hCCCCCCCCHHHHHhcCcCcc-------------cCCCCCCcEEEECC
Confidence 358889988754323332111 12789999999974
No 90
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=57.54 E-value=9.8 Score=24.56 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=15.0
Q ss_pred cccCCCEEEcCCCCceEEEECCEEEEEE
Q psy12488 51 VVNVGDKVLLPKFGGTKIEVEGQELHLF 78 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~g~ev~~dg~~y~ii 78 (91)
.+|+||+|+.-+ .-+|+.|+++
T Consensus 76 ~Lk~GD~V~ll~------~~~gQ~yiVl 97 (100)
T PF10844_consen 76 GLKVGDKVLLLR------VQGGQKYIVL 97 (100)
T ss_pred CCcCCCEEEEEE------ecCCCEEEEE
Confidence 689999998755 2245666655
No 91
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=57.43 E-value=13 Score=26.37 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=19.2
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|.|+++|+... .+++||+|+.
T Consensus 64 e~~G~v~~~G~~~~---------~~~~Gd~V~~ 87 (328)
T cd08268 64 EAAGVVEAVGAGVT---------GFAVGDRVSV 87 (328)
T ss_pred ceEEEEEeeCCCCC---------cCCCCCEEEe
Confidence 46899999998643 4799999985
No 92
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=57.11 E-value=12 Score=28.76 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=19.8
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
..|+|+++|++.. .+++||+|+..
T Consensus 85 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 108 (398)
T TIGR01751 85 ASGVVWRVGPGVT---------RWKVGDEVVAS 108 (398)
T ss_pred eEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 5799999998764 58999999864
No 93
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=56.85 E-value=22 Score=26.93 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=29.4
Q ss_pred cccCCCEEEc-CCCCceEEEECCEEEEEEecCcEEEEee
Q psy12488 51 VVNVGDKVLL-PKFGGTKIEVEGQELHLFKEADLLAVIE 88 (91)
Q Consensus 51 ~VkvGD~Vlf-~~y~g~ev~~dg~~y~ii~~~DIlavi~ 88 (91)
.+++||+|.+ +......+..-+. |++++...|.+.+.
T Consensus 305 ~~~vGd~v~~ip~H~c~t~~~~~~-~~vv~~~~v~~~w~ 342 (345)
T cd07376 305 DLPIGDRVFLVPNHACETVALHDE-LYVVEGGRVAATWP 342 (345)
T ss_pred CCCCCCEEEEeCCccccchhcCCE-EEEEECCEEEEEEe
Confidence 5899999999 6677777766655 89999988887654
No 94
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.79 E-value=19 Score=27.94 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=19.4
Q ss_pred cccCCCEEEcCCC----CceEEEECCEEEEEEe
Q psy12488 51 VVNVGDKVLLPKF----GGTKIEVEGQELHLFK 79 (91)
Q Consensus 51 ~VkvGD~Vlf~~y----~g~ev~~dg~~y~ii~ 79 (91)
.+++||+|...+- .|.++++. ..|+++|
T Consensus 261 ~~~pGd~vvv~dg~mki~G~d~kV~-t~yiIcr 292 (293)
T COG4079 261 EVEPGDRVVVKDGVMKIDGKDLKVI-TGYIICR 292 (293)
T ss_pred ccCCCCEEEEecCceEeccccceee-eeeEEec
Confidence 5899999999773 25555554 5677765
No 95
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=56.65 E-value=13 Score=27.00 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=18.9
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
..|+|+++|+... .+++||+|+.
T Consensus 64 ~~G~v~~~G~~v~---------~~~~Gd~V~~ 86 (338)
T cd08254 64 IAGTVVEVGAGVT---------NFKVGDRVAV 86 (338)
T ss_pred ccEEEEEECCCCc---------cCCCCCEEEE
Confidence 5799999998654 4789999985
No 96
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=56.32 E-value=13 Score=27.27 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=19.5
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~~G~~v~---------~~~~Gd~V~~ 83 (338)
T PRK09422 60 EGIGIVKEVGPGVT---------SLKVGDRVSI 83 (338)
T ss_pred ccceEEEEECCCCc---------cCCCCCEEEE
Confidence 46899999998653 4789999985
No 97
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=55.93 E-value=15 Score=25.41 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=20.1
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. .+++||+|+.-
T Consensus 34 e~~G~v~~~g~~~~---------~~~~Gd~V~~~ 58 (293)
T cd05195 34 ECSGIVTRVGSGVT---------GLKVGDRVMGL 58 (293)
T ss_pred eeeEEEEeecCCcc---------CCCCCCEEEEE
Confidence 46899999998653 58899999864
No 98
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=55.92 E-value=15 Score=26.86 Aligned_cols=24 Identities=42% Similarity=0.501 Sum_probs=19.7
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|.|+++|++.. .+++||+|+.
T Consensus 59 ~~~G~v~~vG~~v~---------~~~~Gd~V~~ 82 (334)
T cd08234 59 EFAGVVVAVGSKVT---------GFKVGDRVAV 82 (334)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEE
Confidence 46899999998653 4799999986
No 99
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=55.73 E-value=13 Score=28.41 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=20.2
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 67 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 91 (373)
T cd08299 67 EAAGIVESVGEGVT---------TVKPGDKVIPL 91 (373)
T ss_pred cceEEEEEeCCCCc---------cCCCCCEEEEC
Confidence 36899999998764 57899999864
No 100
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=55.12 E-value=15 Score=26.83 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=19.6
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|++.
T Consensus 60 e~~G~v~~~g~~~~---------~~~~Gd~V~~~ 84 (330)
T cd08245 60 EIVGEVVEVGAGVE---------GRKVGDRVGVG 84 (330)
T ss_pred cceEEEEEECCCCc---------ccccCCEEEEc
Confidence 35799999997653 58999999853
No 101
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=54.97 E-value=16 Score=26.13 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=19.6
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. .+++||+|+.-
T Consensus 58 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 82 (305)
T cd08270 58 DAAGVVERAAADGS---------GPAVGARVVGL 82 (305)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 46799999998643 47899999853
No 102
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=54.66 E-value=16 Score=26.37 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=20.0
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. .+++||+|+..
T Consensus 66 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 90 (324)
T cd08244 66 EVAGVVDAVGPGVD---------PAWLGRRVVAH 90 (324)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 36899999998653 47899999874
No 103
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=54.62 E-value=17 Score=22.16 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=40.0
Q ss_pred ecCCccc--cceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEEECCEE
Q psy12488 20 IPEKAQQ--EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQE 74 (91)
Q Consensus 20 LP~~~~~--k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~dg~~ 74 (91)
+|..|-. ....|+.+-||-+.. +|.++|-.|-+.....|-.|.|.++.++.=|
T Consensus 12 vP~~AV~~G~~~~G~~lYvgR~~~--~g~~~pGKv~p~~~~~yi~~~g~E~~~~~YE 66 (71)
T smart00696 12 IPPNAVVGGTDSDGEPLYVGRAYY--EGSLLPGKVVPSHGCAYIPYGGQEVRLDSYE 66 (71)
T ss_pred CCCCcEEcccCCCCCEEEEEEEEE--CCcEEEEEEEccCCEEEEEECCEEEEcCeEE
Confidence 4666632 345677788887665 6788888999999999999999999985433
No 104
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=54.42 E-value=16 Score=26.28 Aligned_cols=26 Identities=38% Similarity=0.446 Sum_probs=20.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
...|.|+++|++.. ..++||+|+...
T Consensus 63 e~~G~v~~~G~~v~---------~~~~Gd~V~~~~ 88 (323)
T cd05282 63 EGVGVVVEVGSGVS---------GLLVGQRVLPLG 88 (323)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEeC
Confidence 46899999998764 478999999754
No 105
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=54.25 E-value=15 Score=25.83 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=19.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. ..++||+|+..
T Consensus 44 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 68 (303)
T cd08251 44 EASGVVRAVGPHVT---------RLAVGDEVIAG 68 (303)
T ss_pred eeeEEEEEECCCCC---------CCCCCCEEEEe
Confidence 46799999998653 47899999863
No 106
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=53.61 E-value=16 Score=27.42 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=18.7
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+ +||+|+..
T Consensus 60 E~~G~V~~vG~~v~---------~~-~GdrV~~~ 83 (349)
T TIGR03201 60 EISGRVIQAGAGAA---------SW-IGKAVIVP 83 (349)
T ss_pred cceEEEEEeCCCcC---------CC-CCCEEEEC
Confidence 36899999999753 24 89999864
No 107
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=53.35 E-value=58 Score=22.56 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=33.1
Q ss_pred ccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEE
Q psy12488 26 QEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIE 69 (91)
Q Consensus 26 ~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~ 69 (91)
..|+.-....+| +.+.+|+.++-.++.|+.++|-+-+++.+.
T Consensus 71 ~qPs~eig~~IG--KTD~~Gki~Wk~~~kG~Y~v~l~n~e~~~~ 112 (131)
T PF10794_consen 71 PQPSKEIGISIG--KTDEEGKIIWKNGRKGKYIVFLPNGETQET 112 (131)
T ss_pred CCCchhhceeec--ccCCCCcEEEecCCcceEEEEEcCCCceeE
Confidence 346666666776 467899999999999999999888876554
No 108
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=53.28 E-value=14 Score=27.97 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=18.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|.|.+||++.. .+++||+|+.
T Consensus 81 ~~~G~v~~vg~~v~---------~~~~Gd~V~~ 104 (348)
T PLN03154 81 EGFGVSKVVDSDDP---------NFKPGDLISG 104 (348)
T ss_pred EeeEEEEEEecCCC---------CCCCCCEEEe
Confidence 34689999998753 5899999973
No 109
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=53.16 E-value=17 Score=27.79 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=19.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 94 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 118 (384)
T cd08265 94 EFSGVVEKTGKNVK---------NFEKGDPVTAE 118 (384)
T ss_pred ceEEEEEEECCCCC---------CCCCCCEEEEC
Confidence 35799999998653 47899999863
No 110
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=52.97 E-value=16 Score=26.83 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=19.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. .+++||+|+..
T Consensus 80 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 104 (350)
T cd08248 80 DCSGVVVDIGSGVK---------SFEIGDEVWGA 104 (350)
T ss_pred eeEEEEEecCCCcc---------cCCCCCEEEEe
Confidence 35799999998653 47899999863
No 111
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.18 E-value=17 Score=26.39 Aligned_cols=42 Identities=26% Similarity=0.188 Sum_probs=26.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEEECCEEEEEEecCcE
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQELHLFKEADL 83 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~DI 83 (91)
...|.|+++|++.. .+++||+|.--...|. -.+|+++..+.+
T Consensus 64 e~~G~v~~vG~~v~---------~~~~Gd~V~~~~~~g~-----~~~~~~~~~~~~ 105 (331)
T cd08273 64 DLVGRVDALGSGVT---------GFEVGDRVAALTRVGG-----NAEYINLDAKYL 105 (331)
T ss_pred ceEEEEEEeCCCCc---------cCCCCCEEEEeCCCcc-----eeeEEEechHHe
Confidence 35799999998653 5899999986432111 135666655443
No 112
>KOG0023|consensus
Probab=51.87 E-value=14 Score=29.65 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+.||+... -.|+||+|=..
T Consensus 72 EiaG~VvkvGs~V~---------~~kiGD~vGVg 96 (360)
T KOG0023|consen 72 EIAGVVVKVGSNVT---------GFKIGDRVGVG 96 (360)
T ss_pred eeeEEEEEECCCcc---------cccccCeeeee
Confidence 46899999999754 58899988654
No 113
>PRK11479 hypothetical protein; Provisional
Probab=51.72 E-value=6.7 Score=30.17 Aligned_cols=39 Identities=8% Similarity=-0.032 Sum_probs=26.7
Q ss_pred ceecceeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 11 YLLFPGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 11 e~~T~~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
.++++-|+-||.++...-..|+-|+.. ++++||.|+|..
T Consensus 37 ~~~~~~~~~~pr~s~~q~~~g~~Vs~~-------------~LqpGDLVFfst 75 (274)
T PRK11479 37 AEAKTWAVKFQHQSSFTEQGIKEITAP-------------DLKPGDLLFSSS 75 (274)
T ss_pred ccchhcceecCcccHHHHhCCcccChh-------------hCCCCCEEEEec
Confidence 356677899998886654444433322 699999999863
No 114
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=51.63 E-value=24 Score=22.08 Aligned_cols=12 Identities=50% Similarity=0.592 Sum_probs=10.2
Q ss_pred cccCCCEEEcCC
Q psy12488 51 VVNVGDKVLLPK 62 (91)
Q Consensus 51 ~VkvGD~Vlf~~ 62 (91)
++++||.|+..-
T Consensus 35 ~~~vGD~VLVH~ 46 (76)
T TIGR00074 35 EVKVGDYVLVHV 46 (76)
T ss_pred CCCCCCEEEEec
Confidence 799999999754
No 115
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=51.44 E-value=12 Score=24.93 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=13.3
Q ss_pred cccCCCEEEcCCCCc
Q psy12488 51 VVNVGDKVLLPKFGG 65 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~g 65 (91)
.+++||+++|..+.+
T Consensus 31 ~ikvGD~I~f~~~~~ 45 (109)
T cd06555 31 QIKVGDKILFNDLDT 45 (109)
T ss_pred cCCCCCEEEEEEcCC
Confidence 699999999999864
No 116
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=51.32 E-value=19 Score=26.76 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=19.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. .+++||+|+--
T Consensus 61 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 85 (339)
T cd08249 61 DFAGTVVEVGSGVT---------RFKVGDRVAGF 85 (339)
T ss_pred eeeEEEEEeCCCcC---------cCCCCCEEEEE
Confidence 46799999998753 47899999853
No 117
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=51.14 E-value=17 Score=27.36 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=19.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++.. . +...++||+|+.
T Consensus 60 e~~G~v~~vG~~~~-~-----~~~~~~Gd~V~~ 86 (367)
T cd08263 60 EISGEVVEVGPNVE-N-----PYGLSVGDRVVG 86 (367)
T ss_pred ccceEEEEeCCCCC-C-----CCcCCCCCEEEE
Confidence 46799999998643 1 113899999986
No 118
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=50.82 E-value=32 Score=22.88 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.4
Q ss_pred eEEEECCEEEEEEecCcEEE
Q psy12488 66 TKIEVEGQELHLFKEADLLA 85 (91)
Q Consensus 66 ~ev~~dg~~y~ii~~~DIla 85 (91)
.=+.++|++|+++|.++-..
T Consensus 60 ~Gi~l~G~KY~~l~~d~~~i 79 (127)
T cd00148 60 TGLTLGGQKYMVIRADDRSI 79 (127)
T ss_pred CCEEECCeEEEEEecCccEE
Confidence 34899999999999988543
No 119
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=50.78 E-value=19 Score=26.59 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=19.4
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|.|+++|++.. .+++||+|+.
T Consensus 61 e~~G~v~~vG~~v~---------~~~~Gd~V~~ 84 (333)
T cd08296 61 EVVGRIDAVGEGVS---------RWKVGDRVGV 84 (333)
T ss_pred ceeEEEEEECCCCc---------cCCCCCEEEe
Confidence 35799999998653 4889999985
No 120
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=50.72 E-value=20 Score=25.59 Aligned_cols=25 Identities=40% Similarity=0.445 Sum_probs=20.0
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. .+++||+|+..
T Consensus 65 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 89 (319)
T cd08267 65 DFAGEVVAVGSGVT---------RFKVGDEVFGR 89 (319)
T ss_pred eeeEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 46799999998654 57899999864
No 121
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=50.06 E-value=19 Score=26.29 Aligned_cols=23 Identities=43% Similarity=0.562 Sum_probs=18.7
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
..|.|+++|++.. .+++||+|+.
T Consensus 66 ~~G~V~~vG~~v~---------~~~~Gd~V~~ 88 (329)
T cd08298 66 IVGRVEAVGPGVT---------RFSVGDRVGV 88 (329)
T ss_pred ccEEEEEECCCCC---------CCcCCCEEEE
Confidence 5799999998653 4899999975
No 122
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=50.06 E-value=22 Score=21.58 Aligned_cols=12 Identities=50% Similarity=0.601 Sum_probs=7.9
Q ss_pred cccCCCEEEcCC
Q psy12488 51 VVNVGDKVLLPK 62 (91)
Q Consensus 51 ~VkvGD~Vlf~~ 62 (91)
++++||+|+..-
T Consensus 37 ~v~~Gd~VLVHa 48 (68)
T PF01455_consen 37 DVKVGDYVLVHA 48 (68)
T ss_dssp SB-TT-EEEEET
T ss_pred CCCCCCEEEEec
Confidence 599999999754
No 123
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=49.71 E-value=20 Score=26.16 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=19.7
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. ..++||+|+..
T Consensus 61 e~~G~v~~~g~~~~---------~~~~G~~V~~~ 85 (334)
T PRK13771 61 EVVGTVEEVGENVK---------GFKPGDRVASL 85 (334)
T ss_pred cceEEEEEeCCCCc---------cCCCCCEEEEC
Confidence 35799999998653 47899999864
No 124
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=49.52 E-value=22 Score=25.32 Aligned_cols=25 Identities=40% Similarity=0.383 Sum_probs=19.6
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|+... .+++||+|+.-
T Consensus 64 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (326)
T cd08272 64 DVAGVVEAVGEGVT---------RFRVGDEVYGC 88 (326)
T ss_pred ceeEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 35799999997653 47899999953
No 125
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=49.52 E-value=19 Score=25.68 Aligned_cols=25 Identities=40% Similarity=0.438 Sum_probs=19.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++.. .+++||+|+..
T Consensus 63 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 87 (325)
T cd08271 63 DGAGVVVAVGAKVT---------GWKVGDRVAYH 87 (325)
T ss_pred ceEEEEEEeCCCCC---------cCCCCCEEEec
Confidence 46799999998654 47899999964
No 126
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=49.30 E-value=19 Score=25.47 Aligned_cols=26 Identities=42% Similarity=0.580 Sum_probs=19.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
...|.|+++|+... .+++||+|+.-.
T Consensus 64 e~~G~v~~~g~~~~---------~~~~Gd~v~~~~ 89 (325)
T cd08253 64 DGAGVVEAVGEGVD---------GLKVGDRVWLTN 89 (325)
T ss_pred ceEEEEEeeCCCCC---------CCCCCCEEEEec
Confidence 35799999997553 579999998643
No 127
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=48.58 E-value=32 Score=25.69 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=35.0
Q ss_pred eEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEEECC---EEEEEEec
Q psy12488 30 NAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEG---QELHLFKE 80 (91)
Q Consensus 30 ~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~dg---~~y~ii~~ 80 (91)
.+.-|==|.|..+.||+. ..|++||.+.++.|.=+.+.--| -+|++.++
T Consensus 202 h~~yiL~G~G~~~~~g~~--~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd 253 (260)
T TIGR03214 202 HGLYVLEGKGVYNLDNNW--VPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKD 253 (260)
T ss_pred eEEEEEeceEEEEECCEE--EEecCCCEEEECCCCCEEEEecCCCcEEEEEEcc
Confidence 355555677776666654 57999999999999988887644 36666543
No 128
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=48.38 E-value=23 Score=26.50 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=18.4
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
...|+|+++ +.. .+++||+|.+..
T Consensus 66 E~~G~V~~v--~v~---------~~~vGdrV~~~~ 89 (343)
T PRK09880 66 EVIGKIVHS--DSS---------GLKEGQTVAINP 89 (343)
T ss_pred ccEEEEEEe--cCc---------cCCCCCEEEECC
Confidence 467999999 332 589999998753
No 129
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=48.18 E-value=24 Score=24.84 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=19.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. .+++||+|+.-
T Consensus 61 e~~G~v~~~g~~~~---------~~~~G~~V~~~ 85 (320)
T cd05286 61 EGAGVVEAVGPGVT---------GFKVGDRVAYA 85 (320)
T ss_pred ceeEEEEEECCCCC---------CCCCCCEEEEe
Confidence 46799999997653 47999999874
No 130
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=47.19 E-value=25 Score=25.52 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=19.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. .+++||+|+..
T Consensus 67 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 91 (329)
T cd08250 67 EGVGEVVAVGEGVT---------DFKVGDAVATM 91 (329)
T ss_pred eeEEEEEEECCCCC---------CCCCCCEEEEe
Confidence 36799999998653 47899999974
No 131
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.00 E-value=12 Score=25.20 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=11.0
Q ss_pred cccCCCEEEcCC
Q psy12488 51 VVNVGDKVLLPK 62 (91)
Q Consensus 51 ~VkvGD~Vlf~~ 62 (91)
.+|+||+++|+.
T Consensus 33 ~ik~GD~IiF~~ 44 (111)
T COG4043 33 QIKPGDKIIFNG 44 (111)
T ss_pred CCCCCCEEEEcC
Confidence 799999999985
No 132
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=46.28 E-value=23 Score=26.27 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=19.0
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
..|+|+++|++.. +| .+++||+|+.
T Consensus 70 ~~G~v~~vG~~v~--~~-----~~~~Gd~V~~ 94 (350)
T cd08256 70 FVGRVVELGEGAE--ER-----GVKVGDRVIS 94 (350)
T ss_pred eeEEEEEeCCCcc--cC-----CCCCCCEEEE
Confidence 5799999998652 00 3789999985
No 133
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=45.27 E-value=25 Score=25.57 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. ..++||+|++-
T Consensus 66 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 90 (336)
T cd08252 66 DASGVVEAVGSEVT---------LFKVGDEVYYA 90 (336)
T ss_pred ceEEEEEEcCCCCC---------CCCCCCEEEEc
Confidence 35799999998653 47999999974
No 134
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=44.46 E-value=44 Score=19.68 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=14.1
Q ss_pred EcCCCCceEEEECCEEEEEEecCcEEEEe
Q psy12488 59 LLPKFGGTKIEVEGQELHLFKEADLLAVI 87 (91)
Q Consensus 59 lf~~y~g~ev~~dg~~y~ii~~~DIlavi 87 (91)
+..+.+|+=.++.-.+--.++..++|+.|
T Consensus 42 I~a~~~G~V~~i~v~~G~~V~~G~~l~~i 70 (71)
T PRK05889 42 VLAEVAGTVSKVSVSVGDVIQAGDLIAVI 70 (71)
T ss_pred EeCCCCEEEEEEEeCCCCEECCCCEEEEE
Confidence 44556664333221111235677777765
No 135
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=44.33 E-value=42 Score=21.28 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=9.9
Q ss_pred cccCCCEEEcCC
Q psy12488 51 VVNVGDKVLLPK 62 (91)
Q Consensus 51 ~VkvGD~Vlf~~ 62 (91)
++++||+|+..-
T Consensus 42 ~~~vGDyVLVHa 53 (82)
T PRK10413 42 ADLLGQWVLVHV 53 (82)
T ss_pred ccccCCEEEEec
Confidence 578999999754
No 136
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=44.29 E-value=28 Score=25.71 Aligned_cols=24 Identities=42% Similarity=0.432 Sum_probs=19.0
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|+... ..++||+|+.
T Consensus 64 e~~G~V~~~G~~v~---------~~~~Gd~V~~ 87 (341)
T cd05281 64 EFAGEVVEVGEGVT---------RVKVGDYVSA 87 (341)
T ss_pred ceEEEEEEECCCCC---------CCCCCCEEEE
Confidence 36899999998642 4789999976
No 137
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=44.05 E-value=66 Score=20.20 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=17.0
Q ss_pred cccCCCEEEcCC-CCceEEEECCEEE
Q psy12488 51 VVNVGDKVLLPK-FGGTKIEVEGQEL 75 (91)
Q Consensus 51 ~VkvGD~Vlf~~-y~g~ev~~dg~~y 75 (91)
.+++||.|+... .-|+=+.++++..
T Consensus 37 ~L~~Gd~VvT~gGi~G~V~~i~d~~v 62 (84)
T TIGR00739 37 SLKKGDKVLTIGGIIGTVTKIAENTI 62 (84)
T ss_pred hCCCCCEEEECCCeEEEEEEEeCCEE
Confidence 678888888765 5566666665433
No 138
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=43.96 E-value=26 Score=24.70 Aligned_cols=25 Identities=48% Similarity=0.581 Sum_probs=19.3
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. .+++||+|+.-
T Consensus 64 e~~G~v~~vg~~~~---------~~~~Gd~V~~~ 88 (323)
T cd05276 64 EVAGVVVAVGPGVT---------GWKVGDRVCAL 88 (323)
T ss_pred eeEEEEEeeCCCCC---------CCCCCCEEEEe
Confidence 35799999998653 47899999864
No 139
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=42.55 E-value=16 Score=23.07 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.5
Q ss_pred CcccCCCEEEcCCCC
Q psy12488 50 PVVNVGDKVLLPKFG 64 (91)
Q Consensus 50 ~~VkvGD~Vlf~~y~ 64 (91)
+.||.||+|++.+-.
T Consensus 4 L~Vk~Gd~ViV~~~~ 18 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQ 18 (75)
T ss_pred cccCCCCEEEEecCc
Confidence 479999999997754
No 140
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=42.50 E-value=35 Score=24.25 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=20.9
Q ss_pred cccCCCEEEcCCCCceEEEECCEEEEEEecCc
Q psy12488 51 VVNVGDKVLLPKFGGTKIEVEGQELHLFKEAD 82 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~D 82 (91)
.+++||.|.+..-.|+...|.=.+-.+++.+|
T Consensus 108 ~L~~GD~I~v~~~~g~~~~Y~V~~~~iV~~~d 139 (174)
T TIGR03784 108 ELRPGDVIRLQTPDGQWQSYQVTATRVVDESE 139 (174)
T ss_pred hCCCCCEEEEEECCCeEEEEEEeEEEEECCcc
Confidence 79999999998777765444333334455544
No 141
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=42.10 E-value=25 Score=22.63 Aligned_cols=18 Identities=17% Similarity=0.422 Sum_probs=14.9
Q ss_pred ceEEEECCEEEEEEecCc
Q psy12488 65 GTKIEVEGQELHLFKEAD 82 (91)
Q Consensus 65 g~ev~~dg~~y~ii~~~D 82 (91)
..-|.++|++|+++|.+|
T Consensus 58 ~~gi~l~G~kY~~~~~d~ 75 (121)
T PF00235_consen 58 SNGITLGGKKYIVLRADD 75 (121)
T ss_dssp HH-EEETTEEEEEEEEET
T ss_pred cCCeEEcCcEeEEEecCC
Confidence 356999999999999876
No 142
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.99 E-value=30 Score=24.83 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=19.7
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|++.. .+++||+|+.-
T Consensus 63 e~~G~v~~~g~~~~---------~~~~G~~V~~~ 87 (337)
T cd08275 63 ECAGTVEAVGEGVK---------DFKVGDRVMGL 87 (337)
T ss_pred eeEEEEEEECCCCc---------CCCCCCEEEEe
Confidence 35799999998654 57899999864
No 143
>PF05203 Hom_end_hint: Hom_end-associated Hint; InterPro: IPR007868 Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life. The crystal structure of the homing nuclease PI-Sce [] revealed two domains: an endonucleolytic centre resembling the C-terminal domain of Drosophila melanogaster Hedgehog protein, and a second domain containing the protein-splicing active site. This domain corresponds to the protein-splicing domain.; GO: 0030908 protein splicing; PDB: 1LWT_A 1UM2_B 1JVA_B 1GPP_A 1VDE_A 1EF0_B 1DFA_A 1LWS_A.
Probab=41.24 E-value=38 Score=24.90 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=18.6
Q ss_pred EEcCCeeCCCCeEecC-cccCCCEEEcCCCC
Q psy12488 35 AVGPGARTPNGEYIKP-VVNVGDKVLLPKFG 64 (91)
Q Consensus 35 AVG~G~~~~~G~~~p~-~VkvGD~Vlf~~y~ 64 (91)
|-|+-.+..||...+. +|++||.|+=++-.
T Consensus 3 ~~gT~vlmaDG~~k~ie~i~~Gd~vmg~dg~ 33 (215)
T PF05203_consen 3 AKGTRVLMADGSIKPIEDIKIGDQVMGPDGR 33 (215)
T ss_dssp ETT-EEEBTTS-EEEGGG--TT-EEEBTTSS
T ss_pred CCCCEEEecCCCeeEEeecccCCEEECCCCC
Confidence 4466667788888888 99999999966544
No 144
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=41.19 E-value=34 Score=25.33 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=19.2
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|.|+++|++... ..++||+|+-
T Consensus 65 e~~G~V~~vG~~v~~--------~~~~Gd~V~~ 89 (352)
T cd08247 65 DYSGVIVKVGSNVAS--------EWKVGDEVCG 89 (352)
T ss_pred eeEEEEEEeCccccc--------CCCCCCEEEE
Confidence 468999999986521 4789999984
No 145
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=41.13 E-value=49 Score=21.96 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=15.5
Q ss_pred eEEEECCEEEEEEecCcEE
Q psy12488 66 TKIEVEGQELHLFKEADLL 84 (91)
Q Consensus 66 ~ev~~dg~~y~ii~~~DIl 84 (91)
.=+.++|++|+++|.+|..
T Consensus 62 ~Gi~l~G~Ky~~~~~d~~~ 80 (129)
T smart00392 62 NGLTLGGQKYMVIRADDRS 80 (129)
T ss_pred CCeEECCeEEEEEEecCcE
Confidence 4589999999999987643
No 146
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=40.44 E-value=37 Score=24.04 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=19.3
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|+... .+++||+|+--
T Consensus 64 e~~G~v~~vg~~~~---------~~~~Gd~V~~~ 88 (325)
T TIGR02824 64 EVAGEVVAVGEGVS---------RWKVGDRVCAL 88 (325)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 46799999997543 47899999863
No 147
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=40.25 E-value=32 Score=24.15 Aligned_cols=26 Identities=46% Similarity=0.565 Sum_probs=20.1
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
...|.|+++|++.. .+++||+|+...
T Consensus 66 e~~G~v~~~G~~~~---------~~~~G~~V~~~~ 91 (309)
T cd05289 66 DVAGVVVAVGPGVT---------GFKVGDEVFGMT 91 (309)
T ss_pred ceeEEEEeeCCCCC---------CCCCCCEEEEcc
Confidence 35799999998653 578999998654
No 148
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=40.02 E-value=59 Score=19.29 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=16.5
Q ss_pred cccCCCEEEcCCC--CceEEEECCEEEE
Q psy12488 51 VVNVGDKVLLPKF--GGTKIEVEGQELH 76 (91)
Q Consensus 51 ~VkvGD~Vlf~~y--~g~ev~~dg~~y~ 76 (91)
.+++||.+-++.. .-..+.++|...+
T Consensus 28 ~L~~Gdvi~l~~~~~~~v~l~v~g~~~~ 55 (77)
T PF01052_consen 28 NLKVGDVIPLDKPADEPVELRVNGQPIF 55 (77)
T ss_dssp C--TT-EEEECCESSTEEEEEETTEEEE
T ss_pred cCCCCCEEEeCCCCCCCEEEEECCEEEE
Confidence 6889999999887 4456677886544
No 149
>PRK02268 hypothetical protein; Provisional
Probab=39.50 E-value=17 Score=25.41 Aligned_cols=14 Identities=14% Similarity=0.155 Sum_probs=10.9
Q ss_pred EecC-cccCCCEEEc
Q psy12488 47 YIKP-VVNVGDKVLL 60 (91)
Q Consensus 47 ~~p~-~VkvGD~Vlf 60 (91)
..|+ -+|+||.++|
T Consensus 30 ~apl~RmkpGD~ivy 44 (141)
T PRK02268 30 AAPLRRMKPGDWIIY 44 (141)
T ss_pred cchhhcCCCCCEEEE
Confidence 3444 7899999997
No 150
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=38.52 E-value=37 Score=24.44 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=19.0
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|.|+++|+... .+++||+|+..
T Consensus 64 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (336)
T cd08276 64 DGAGEVVAVGEGVT---------RFKVGDRVVPT 88 (336)
T ss_pred ceeEEEEEeCCCCc---------CCCCCCEEEEe
Confidence 35799999997543 47889999864
No 151
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=37.36 E-value=34 Score=19.34 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=9.4
Q ss_pred cccCCCEEEcCC
Q psy12488 51 VVNVGDKVLLPK 62 (91)
Q Consensus 51 ~VkvGD~Vlf~~ 62 (91)
.+++||.|.|..
T Consensus 25 ~~~vG~eI~~~~ 36 (56)
T PF12791_consen 25 GMEVGQEIEFDE 36 (56)
T ss_pred CCcccCEEEEec
Confidence 588888888866
No 152
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=37.25 E-value=11 Score=25.31 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=0.0
Q ss_pred CCCeEecC-cccCCCEEEcCC
Q psy12488 43 PNGEYIKP-VVNVGDKVLLPK 62 (91)
Q Consensus 43 ~~G~~~p~-~VkvGD~Vlf~~ 62 (91)
.+|. .|. ++++||+|+=.+
T Consensus 5 ~~G~-k~Ie~I~~GD~Vls~d 24 (130)
T PF07591_consen 5 ADGL-KPIEDIKVGDRVLSYD 24 (130)
T ss_dssp ---------------------
T ss_pred cccc-cccccccccccccccc
Confidence 4553 455 899999999654
No 153
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=37.21 E-value=64 Score=24.46 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=25.4
Q ss_pred cccCCCEEEcCC-CCceEEEECCEEEEEEecCcEEEEe
Q psy12488 51 VVNVGDKVLLPK-FGGTKIEVEGQELHLFKEADLLAVI 87 (91)
Q Consensus 51 ~VkvGD~Vlf~~-y~g~ev~~dg~~y~ii~~~DIlavi 87 (91)
.+++||+|.|-+ |+...+..= ..|++++.+.|...+
T Consensus 316 ~~~vGd~v~~~p~h~c~t~~~~-~~~~vv~~~~v~~~w 352 (358)
T cd06819 316 PLKIGDRLELVPGHCDPTVNLH-DWYVGVRGGVVEDVW 352 (358)
T ss_pred CCCCCCEEEEECCCcCcccccc-CEEEEEECCEEEEEE
Confidence 689999999976 666555433 347778877676655
No 154
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=36.86 E-value=71 Score=17.16 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=16.7
Q ss_pred cccCCCEEEcCCCC-ceEEEECCEEEEEE
Q psy12488 51 VVNVGDKVLLPKFG-GTKIEVEGQELHLF 78 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~-g~ev~~dg~~y~ii 78 (91)
.++.||+|.+..-. ..+|-++++.++++
T Consensus 41 ~v~~~d~i~i~~~~~~~~i~~ed~~~lvv 69 (70)
T cd00165 41 KVKPGDVIEVDGKSIEEDIVYEDKKLLVV 69 (70)
T ss_pred CcCCCCEEEEcCCCcccceeeccCCEEEe
Confidence 67788888776421 12555666666554
No 155
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=36.78 E-value=25 Score=20.48 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=9.8
Q ss_pred cccCCCEEEcC
Q psy12488 51 VVNVGDKVLLP 61 (91)
Q Consensus 51 ~VkvGD~Vlf~ 61 (91)
.+.+||+|.|.
T Consensus 40 ~~~vGD~V~~~ 50 (64)
T cd04451 40 RILPGDRVKVE 50 (64)
T ss_pred ccCCCCEEEEE
Confidence 48999999988
No 156
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=36.20 E-value=32 Score=22.38 Aligned_cols=13 Identities=62% Similarity=0.818 Sum_probs=9.0
Q ss_pred cCcccCCCEEEcC
Q psy12488 49 KPVVNVGDKVLLP 61 (91)
Q Consensus 49 p~~VkvGD~Vlf~ 61 (91)
.+.|++||+|.-.
T Consensus 43 ~p~V~~Gd~V~~G 55 (101)
T PF13375_consen 43 EPVVKVGDKVKKG 55 (101)
T ss_pred eEEEcCCCEEcCC
Confidence 3478888888653
No 157
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=36.15 E-value=47 Score=29.47 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=14.7
Q ss_pred cccCCCEEEcCCCCce
Q psy12488 51 VVNVGDKVLLPKFGGT 66 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~g~ 66 (91)
++|+||+|-+..+.|+
T Consensus 660 pvkvGD~It~g~~~G~ 675 (835)
T COG3264 660 PVKVGDTVTIGTVSGT 675 (835)
T ss_pred CcccCCEEEECCceEE
Confidence 7999999999999973
No 158
>PF12852 Cupin_6: Cupin
Probab=35.94 E-value=23 Score=24.36 Aligned_cols=32 Identities=31% Similarity=0.223 Sum_probs=20.9
Q ss_pred EEEEcCCeeCCCCeEecCcccCCCEEEcCCCC
Q psy12488 33 VVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG 64 (91)
Q Consensus 33 VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~ 64 (91)
+|.-|.....-+|...|..+..||.|+++.-.
T Consensus 40 ~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~ 71 (186)
T PF12852_consen 40 VVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGT 71 (186)
T ss_pred EEECCeEEEEEcCCCCeEEecCCCEEEEcCCC
Confidence 33444444433443478899999999998754
No 159
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=34.69 E-value=26 Score=22.70 Aligned_cols=12 Identities=33% Similarity=0.302 Sum_probs=10.1
Q ss_pred cccCCCEEEcCC
Q psy12488 51 VVNVGDKVLLPK 62 (91)
Q Consensus 51 ~VkvGD~Vlf~~ 62 (91)
.+++||+|+..-
T Consensus 41 ~~~vGDyVLVHa 52 (90)
T PRK10409 41 QPRVGQWVLVHV 52 (90)
T ss_pred ccCCCCEEEEec
Confidence 589999999754
No 160
>PRK10689 transcription-repair coupling factor; Provisional
Probab=34.49 E-value=64 Score=29.41 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=25.0
Q ss_pred CcccCCCEEEcCCCC-----c-eEEEECC--EEEEEEecC
Q psy12488 50 PVVNVGDKVLLPKFG-----G-TKIEVEG--QELHLFKEA 81 (91)
Q Consensus 50 ~~VkvGD~Vlf~~y~-----g-~ev~~dg--~~y~ii~~~ 81 (91)
.++++||.|++.+|+ | ..++++| .+|+.++..
T Consensus 475 ~~l~~Gd~VVh~~~Gig~~~gi~~~~~~g~~~~~~~l~y~ 514 (1147)
T PRK10689 475 AELHPGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA 514 (1147)
T ss_pred hhCCCCCEEEecCCCeEEEeeEEEEecCCcceeEEEEEEC
Confidence 389999999999988 3 3456676 788888754
No 161
>PRK00276 infA translation initiation factor IF-1; Validated
Probab=34.10 E-value=30 Score=20.94 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=11.2
Q ss_pred cccCCCEEEcC--CCC
Q psy12488 51 VVNVGDKVLLP--KFG 64 (91)
Q Consensus 51 ~VkvGD~Vlf~--~y~ 64 (91)
.+.+||.|.|. .|.
T Consensus 46 ~i~vGD~V~ve~~~~~ 61 (72)
T PRK00276 46 RILPGDKVTVELSPYD 61 (72)
T ss_pred ccCCCCEEEEEEcccC
Confidence 47899999998 553
No 162
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=33.96 E-value=1e+02 Score=19.89 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=24.4
Q ss_pred cccCCCEEEcCCCC--c--eEEEE-CCEEEEEEecCcEE
Q psy12488 51 VVNVGDKVLLPKFG--G--TKIEV-EGQELHLFKEADLL 84 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~--g--~ev~~-dg~~y~ii~~~DIl 84 (91)
++++|+.|.|..=+ | .+++. ||..|.++...+++
T Consensus 2 ~I~vGs~VRY~~TGT~G~V~diK~ed~~~wv~LD~t~L~ 40 (91)
T PF09871_consen 2 PIKVGSYVRYINTGTVGKVVDIKEEDGETWVLLDSTDLY 40 (91)
T ss_pred cceeCCEEEECCCCeEEEEEEEEEeCCCeEEEEccCCce
Confidence 57899999998754 3 35554 57888888666654
No 163
>PF11549 Sec31: Protein transport protein SEC31; InterPro: IPR021614 Sec31 is involved in COPII coat formation as it forms through the sequential binding of three cytoplasmic proteins: Sar1, Sec23/24 and Sec13/31. Sec13/31 is recruited by the pre-budding complex and polymerisation of Sec13/31 occurs to form an octahedral cage that is the outer shell of the COPII coat []. Sec13/31 is a hetero-tetramer which is organised as a linear array of alpha-solenoid and beta-propeller domains to form a rod in which twenty-four copies assemble to form the COPII cub-octahedron []. ; PDB: 2QTV_D.
Probab=33.87 E-value=15 Score=21.62 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=0.8
Q ss_pred ecCCccccceeEEEEEEcC
Q psy12488 20 IPEKAQQEVNNAVVVAVGP 38 (91)
Q Consensus 20 LP~~~~~k~~~G~VVAVG~ 38 (91)
||...++|+..++-|+|.|
T Consensus 29 Lpl~vkEKpsRAKavsvap 47 (51)
T PF11549_consen 29 LPLKVKEKPSRAKAVSVAP 47 (51)
T ss_dssp --S----------------
T ss_pred cchhhhccccccccccccc
Confidence 6777889999999999987
No 164
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=33.58 E-value=47 Score=24.05 Aligned_cols=23 Identities=26% Similarity=0.014 Sum_probs=17.9
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|++ .+++||+|+..
T Consensus 71 e~~G~V~~~G~~-----------~~~~Gd~V~~~ 93 (329)
T cd05288 71 GGVGEVVESRSP-----------DFKVGDLVSGF 93 (329)
T ss_pred ceEEEEEecCCC-----------CCCCCCEEecc
Confidence 357999999852 48999999864
No 165
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=33.58 E-value=22 Score=23.65 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=7.4
Q ss_pred cccCCCEEEcCC
Q psy12488 51 VVNVGDKVLLPK 62 (91)
Q Consensus 51 ~VkvGD~Vlf~~ 62 (91)
.+|+||.|+|=.
T Consensus 39 ~mk~GD~vifY~ 50 (143)
T PF01878_consen 39 RMKPGDKVIFYH 50 (143)
T ss_dssp C--TT-EEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 799999999933
No 166
>KOG3309|consensus
Probab=33.25 E-value=11 Score=26.98 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=18.9
Q ss_pred eCCCCeEecCcccCCCEEEcCC
Q psy12488 41 RTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 41 ~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
.+.+|..++...++||.||+--
T Consensus 49 v~~dG~~~~i~g~vGdtlLd~a 70 (159)
T KOG3309|consen 49 VDPDGEEIKIKGKVGDTLLDAA 70 (159)
T ss_pred ECCCCCEEEeeeecchHHHHHH
Confidence 4579999999999999999743
No 167
>PF13403 Hint_2: Hint domain
Probab=33.22 E-value=1e+02 Score=21.08 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=25.5
Q ss_pred CCeeCCCCeEecCcccCCCEEEcCCCCceEEEECCEEE
Q psy12488 38 PGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQEL 75 (91)
Q Consensus 38 ~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~dg~~y 75 (91)
+-..+.+|.+.--.+++||+|+=.+-.-++|+.=+...
T Consensus 7 T~I~T~~G~~~Ve~L~~GD~V~T~dgg~~~V~wig~~~ 44 (147)
T PF13403_consen 7 TLIETPDGPRPVEDLRPGDRVLTRDGGFQPVRWIGRRT 44 (147)
T ss_pred CEEecCCcCeEeeccCCCCEEEecCCCEEEEEEEEEEE
Confidence 33445566444448999999998877767776655443
No 168
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=33.08 E-value=55 Score=23.75 Aligned_cols=21 Identities=19% Similarity=0.036 Sum_probs=16.1
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
...|+|+++|++ .++||+|+.
T Consensus 57 e~~G~Vv~~G~~------------~~~G~~V~~ 77 (319)
T cd08242 57 EFVGIVEEGPEA------------ELVGKRVVG 77 (319)
T ss_pred eEEEEEEEeCCC------------CCCCCeEEE
Confidence 357999999974 358888863
No 169
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=33.07 E-value=55 Score=23.26 Aligned_cols=23 Identities=13% Similarity=0.029 Sum_probs=17.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+++|. . .+++||+|+..
T Consensus 63 e~~G~v~~vG~--~---------~~~~Gd~V~~~ 85 (320)
T cd08243 63 EAVGEVEEAPG--G---------TFTPGQRVATA 85 (320)
T ss_pred eeEEEEEEecC--C---------CCCCCCEEEEe
Confidence 35799999994 1 48999999854
No 170
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=33.02 E-value=1.1e+02 Score=20.05 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=14.2
Q ss_pred cccCCCEEEcCC-CCceEEEECC
Q psy12488 51 VVNVGDKVLLPK-FGGTKIEVEG 72 (91)
Q Consensus 51 ~VkvGD~Vlf~~-y~g~ev~~dg 72 (91)
.+++||+|+... .-|+=+.+++
T Consensus 52 ~Lk~Gd~VvT~gGi~G~Vv~i~~ 74 (106)
T PRK05585 52 SLAKGDEVVTNGGIIGKVTKVSE 74 (106)
T ss_pred hcCCCCEEEECCCeEEEEEEEeC
Confidence 677888886644 5566566655
No 171
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=32.97 E-value=44 Score=24.17 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=18.7
Q ss_pred eEecCcccCCCEEEcCC-CCceEEEECCEEEEE
Q psy12488 46 EYIKPVVNVGDKVLLPK-FGGTKIEVEGQELHL 77 (91)
Q Consensus 46 ~~~p~~VkvGD~Vlf~~-y~g~ev~~dg~~y~i 77 (91)
+..-..+++||.|++++ |+=..|..+++.+.+
T Consensus 108 ~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~ 140 (182)
T PF06560_consen 108 DVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVF 140 (182)
T ss_dssp -EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEE
T ss_pred eEEEEEeCCCCEEEECCCceEEEEECCCCcEEE
Confidence 45556888999999988 444677777666554
No 172
>TIGR03635 S17_bact 30S ribosomal protein S17. This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.
Probab=32.79 E-value=26 Score=21.54 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=10.9
Q ss_pred CcccCCCEEEcCC
Q psy12488 50 PVVNVGDKVLLPK 62 (91)
Q Consensus 50 ~~VkvGD~Vlf~~ 62 (91)
..+++||+|.+.+
T Consensus 47 ~~~k~GD~V~I~e 59 (71)
T TIGR03635 47 NECKVGDVVRIIE 59 (71)
T ss_pred CCCCCCCEEEEEE
Confidence 3799999999865
No 173
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=32.61 E-value=22 Score=23.26 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=13.8
Q ss_pred CcccCCCEEEcCCCCce
Q psy12488 50 PVVNVGDKVLLPKFGGT 66 (91)
Q Consensus 50 ~~VkvGD~Vlf~~y~g~ 66 (91)
+-++.||.|+.++|..+
T Consensus 56 iwI~~GD~VlVsp~d~~ 72 (99)
T TIGR00523 56 IWIREGDVVIVKPWEFQ 72 (99)
T ss_pred EEecCCCEEEEEEccCC
Confidence 35899999999877654
No 174
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=32.54 E-value=60 Score=22.84 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=19.1
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
...|+|+.+|++.. ..++||+|+--
T Consensus 64 e~~G~v~~~g~~~~---------~~~~G~~V~~~ 88 (323)
T cd08241 64 EVAGVVEAVGEGVT---------GFKVGDRVVAL 88 (323)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 35799999997543 47889999864
No 175
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=32.51 E-value=15 Score=22.98 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=0.0
Q ss_pred cccCCCEEEcCC-CCceEEEECCE
Q psy12488 51 VVNVGDKVLLPK-FGGTKIEVEGQ 73 (91)
Q Consensus 51 ~VkvGD~Vlf~~-y~g~ev~~dg~ 73 (91)
.+++||+|+... .-|+=++++++
T Consensus 36 ~Lk~Gd~VvT~gGi~G~V~~i~~~ 59 (82)
T PF02699_consen 36 SLKPGDEVVTIGGIYGTVVEIDDD 59 (82)
T ss_dssp ------------------------
T ss_pred cCCCCCEEEECCcEEEEEEEEeCC
Confidence 688888888765 66665666433
No 176
>PF03829 PTSIIA_gutA: PTS system glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2F9H_A.
Probab=32.49 E-value=1.6e+02 Score=19.74 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=7.3
Q ss_pred eeEEEEEEcCCee
Q psy12488 29 NNAVVVAVGPGAR 41 (91)
Q Consensus 29 ~~G~VVAVG~G~~ 41 (91)
.+.+|.++|+-..
T Consensus 5 y~~~I~~IG~~a~ 17 (117)
T PF03829_consen 5 YETTITAIGEEAE 17 (117)
T ss_dssp EEEEEEEE-TTT-
T ss_pred EEEEEEEhhhhHH
Confidence 4567777777554
No 177
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=32.44 E-value=79 Score=25.02 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=11.1
Q ss_pred cccCCCEEEcCC
Q psy12488 51 VVNVGDKVLLPK 62 (91)
Q Consensus 51 ~VkvGD~Vlf~~ 62 (91)
.+++||.|+|..
T Consensus 363 ~l~~GD~l~i~~ 374 (420)
T PRK11165 363 QVQVGDYLVFHD 374 (420)
T ss_pred CCCCCCEEEEec
Confidence 899999999976
No 178
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=32.37 E-value=41 Score=19.90 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=11.7
Q ss_pred EecCcccCCCEEEcCCCCc
Q psy12488 47 YIKPVVNVGDKVLLPKFGG 65 (91)
Q Consensus 47 ~~p~~VkvGD~Vlf~~y~g 65 (91)
.+|+-++.||+|.++--.|
T Consensus 33 ~VP~FI~~Gd~I~VdT~~g 51 (56)
T PF09285_consen 33 QVPLFIEEGDKIKVDTRDG 51 (56)
T ss_dssp EEETT--TT-EEEEETTTT
T ss_pred EccceecCCCEEEEECCCC
Confidence 4778899999988766544
No 179
>CHL00010 infA translation initiation factor 1
Probab=31.90 E-value=79 Score=19.46 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=11.5
Q ss_pred CcccCCCEEEcC--CCC
Q psy12488 50 PVVNVGDKVLLP--KFG 64 (91)
Q Consensus 50 ~~VkvGD~Vlf~--~y~ 64 (91)
..+.+||.|.|. .+.
T Consensus 45 i~~~vGD~V~ve~~~~~ 61 (78)
T CHL00010 45 IRILPGDRVKVELSPYD 61 (78)
T ss_pred cccCCCCEEEEEEcccC
Confidence 357889999998 554
No 180
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=31.76 E-value=75 Score=28.30 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=24.6
Q ss_pred CcccCCCEEEcCCCC-----c-eEEEECC--EEEEEEecC
Q psy12488 50 PVVNVGDKVLLPKFG-----G-TKIEVEG--QELHLFKEA 81 (91)
Q Consensus 50 ~~VkvGD~Vlf~~y~-----g-~ev~~dg--~~y~ii~~~ 81 (91)
.++++||.|++.+|+ | ..++++| .+|+.++..
T Consensus 326 ~~l~~Gd~VVh~~~Gig~~~gi~~~~~~g~~~dy~~l~y~ 365 (926)
T TIGR00580 326 NELNPGDYVVHLDHGIGRFLGLETLEVGGIERDYLVLEYA 365 (926)
T ss_pred hhCCCCCEEEecCCCeEEEeeEEEEecCCcceeEEEEEEC
Confidence 489999999999988 3 3456666 688887754
No 181
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=31.62 E-value=45 Score=24.46 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=16.5
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEc
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 60 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf 60 (91)
-..|+|+++|+ .+++||+|+.
T Consensus 64 ~~~g~v~~~~~------------~~~~GdrV~~ 84 (325)
T TIGR02825 64 QVARVVESKNV------------ALPKGTIVLA 84 (325)
T ss_pred eEEEEEEeCCC------------CCCCCCEEEE
Confidence 46788888763 4789999986
No 182
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=31.32 E-value=42 Score=26.73 Aligned_cols=31 Identities=19% Similarity=0.108 Sum_probs=20.9
Q ss_pred EcCCeeCCCCeEecCcccCCCEEEcCCCCce
Q psy12488 36 VGPGARTPNGEYIKPVVNVGDKVLLPKFGGT 66 (91)
Q Consensus 36 VG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ 66 (91)
.|-|.........|..+|+||.|+..+-.|.
T Consensus 145 t~iG~~~~~~~v~~~~~~~GD~vI~tg~~g~ 175 (339)
T COG0309 145 TGIGIIDKEILVSPSGARPGDAVIVTGTIGI 175 (339)
T ss_pred eeEEeecCCcccccCCCCCCCEEEEcCChhH
Confidence 3334443344466678999999999887653
No 183
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=30.94 E-value=64 Score=24.14 Aligned_cols=35 Identities=26% Similarity=0.160 Sum_probs=23.2
Q ss_pred cceeEEEEEEcCCeeC-----CCC-----eEecCcccCCCEEEcC
Q psy12488 27 EVNNAVVVAVGPGART-----PNG-----EYIKPVVNVGDKVLLP 61 (91)
Q Consensus 27 k~~~G~VVAVG~G~~~-----~~G-----~~~p~~VkvGD~Vlf~ 61 (91)
-...|+||.|..+... -+. .--+..||+||.|...
T Consensus 40 ~tiEGrVvEV~~~~i~iesk~yn~~v~i~~d~~~nvKVGD~VKaT 84 (213)
T PRK06763 40 STIEGRVVEVDNGVIVIKSKQYEEPVSVYIDSLSNVKVGDEVKAT 84 (213)
T ss_pred ceeeeEEEEEeCCEEEEEeccCCCceEEEecCCCCcccCcEEEEc
Confidence 3789999999988422 000 0123478999999754
No 184
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=30.93 E-value=90 Score=23.66 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=25.9
Q ss_pred cccCCCEEEcCC-CCceEEEECCEEEEEEecCcEEEEee
Q psy12488 51 VVNVGDKVLLPK-FGGTKIEVEGQELHLFKEADLLAVIE 88 (91)
Q Consensus 51 ~VkvGD~Vlf~~-y~g~ev~~dg~~y~ii~~~DIlavi~ 88 (91)
.+++||+|.|-+ |+...+..= ..|++++.+.|..++.
T Consensus 311 ~~~vGd~i~~~p~h~c~t~~~~-~~~~~~~~~~v~~~w~ 348 (353)
T cd06820 311 LPRVGDRVRVVPNHACVVVNLV-DEVYLVDGGEVVETWP 348 (353)
T ss_pred CCCCCCEEEEECCCcCcchhcC-CEEEEEECCEEEEEEE
Confidence 589999999977 655555443 3577888877766553
No 185
>COG4506 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.87 E-value=47 Score=23.41 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.0
Q ss_pred eEEEECCEEEEEEecCcEEEEe
Q psy12488 66 TKIEVEGQELHLFKEADLLAVI 87 (91)
Q Consensus 66 ~ev~~dg~~y~ii~~~DIlavi 87 (91)
+.+++++.++++||.-|+....
T Consensus 56 TtlKi~d~e~~liR~G~v~M~~ 77 (143)
T COG4506 56 TTLKIDDDELLLIRSGDVNMRM 77 (143)
T ss_pred EEEEEcCCEEEEEEcccchhhh
Confidence 6789999999999999997644
No 186
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=30.70 E-value=1.5e+02 Score=23.83 Aligned_cols=34 Identities=26% Similarity=0.527 Sum_probs=24.1
Q ss_pred EecCcccCCCEEEcCCCCce-------EEEECCEEEEEEec
Q psy12488 47 YIKPVVNVGDKVLLPKFGGT-------KIEVEGQELHLFKE 80 (91)
Q Consensus 47 ~~p~~VkvGD~Vlf~~y~g~-------ev~~dg~~y~ii~~ 80 (91)
+--..++.||.|+.-+|.|. -++++-.-.++++.
T Consensus 276 kYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIErRPl~lIeA 316 (376)
T COG1465 276 KYLAELKAGDEVLIVDFDGRTRSAIVGRVKIERRPLMLIEA 316 (376)
T ss_pred EEhhhhcCCCeEEEEecCCceeEEEEEEEEeecCceEEEEE
Confidence 33448999999999998873 25666666666653
No 187
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=30.30 E-value=43 Score=22.80 Aligned_cols=34 Identities=18% Similarity=0.462 Sum_probs=23.0
Q ss_pred CcccCCCEEEcCCC------CceEEEECCEEEEEEecCcEE
Q psy12488 50 PVVNVGDKVLLPKF------GGTKIEVEGQELHLFKEADLL 84 (91)
Q Consensus 50 ~~VkvGD~Vlf~~y------~g~ev~~dg~~y~ii~~~DIl 84 (91)
..+|+|.+++.+.- ..+.+.+.+. -.|+|++|||
T Consensus 3 l~LkpgERi~INGAVi~N~drr~~l~i~n~-a~~Lre~dil 42 (126)
T PF07378_consen 3 LSLKPGERIIINGAVIRNGDRRSTLEIEND-APFLREKDIL 42 (126)
T ss_pred eeecCCCEEEEcCeEEEeCCCceEEEEecC-CceechhccC
Confidence 36788888888651 1245556555 6778888886
No 188
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=30.09 E-value=49 Score=22.14 Aligned_cols=14 Identities=50% Similarity=0.745 Sum_probs=11.7
Q ss_pred cCcccCCCEEEcCC
Q psy12488 49 KPVVNVGDKVLLPK 62 (91)
Q Consensus 49 p~~VkvGD~Vlf~~ 62 (91)
...+++||.||-+.
T Consensus 53 ~~~L~~GD~VLA~~ 66 (124)
T PF15057_consen 53 RHSLQVGDKVLAPW 66 (124)
T ss_pred cCcCCCCCEEEEec
Confidence 45899999999863
No 189
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=30.06 E-value=17 Score=23.58 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=13.4
Q ss_pred EEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 32 VVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 32 ~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
-|+++.+|... ...+++||+|.|.+
T Consensus 84 ~vLE~~aG~~~------~~~i~~Gd~v~~~~ 108 (108)
T PF02643_consen 84 YVLELPAGWFE------KLGIKVGDRVRIEP 108 (108)
T ss_dssp EEEEEETTHHH------HHT--TT-EEE---
T ss_pred EEEEcCCCchh------hcCCCCCCEEEecC
Confidence 37888877642 33699999998763
No 190
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=29.91 E-value=92 Score=23.81 Aligned_cols=36 Identities=8% Similarity=0.207 Sum_probs=25.1
Q ss_pred cccCCCEEEcCC-CCceEEEECCEEEEEEecCcEE-EEe
Q psy12488 51 VVNVGDKVLLPK-FGGTKIEVEGQELHLFKEADLL-AVI 87 (91)
Q Consensus 51 ~VkvGD~Vlf~~-y~g~ev~~dg~~y~ii~~~DIl-avi 87 (91)
.+++||+|.|-+ |+..-+..- ..|++++.+.+. .++
T Consensus 331 ~~~vGd~v~~~p~H~c~t~~~~-~~~~~v~~~~~~~~~w 368 (374)
T cd06812 331 DLPIGTRLRILPNHACATAAQH-DHYHVLDGEGVVQATW 368 (374)
T ss_pred CCCCCCEEEEeCCccCcchhcC-CEEEEEeCCCEEEEEe
Confidence 689999998866 665555443 457778877666 554
No 191
>PF03293 Pox_RNA_pol: Poxvirus DNA-directed RNA polymerase, 18 kD subunit; InterPro: IPR004973 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The Poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. The enzyme consists of at least eight subunits, this is the 18 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0019083 viral transcription
Probab=29.90 E-value=1.2e+02 Score=21.67 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=20.1
Q ss_pred cccCCCEEEcCCCCceEEEECCEEEEEEecCcEE
Q psy12488 51 VVNVGDKVLLPKFGGTKIEVEGQELHLFKEADLL 84 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~DIl 84 (91)
.|.=||.|---.-..-.|.|++-+|.|+|..-+.
T Consensus 98 ~V~CgDLiCkl~rdsGtVSf~dsKYCfirNg~vY 131 (160)
T PF03293_consen 98 TVQCGDLICKLSRDSGTVSFNDSKYCFIRNGVVY 131 (160)
T ss_pred EEEcCcEEEEeeccCCeEEecCceEEEEECCEEe
Confidence 3444555433222234578888999999875443
No 192
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=29.81 E-value=1.2e+02 Score=20.27 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=18.0
Q ss_pred cccCCCEEEcCC-CCceEEEECCE-EEEEEecCcE
Q psy12488 51 VVNVGDKVLLPK-FGGTKIEVEGQ-ELHLFKEADL 83 (91)
Q Consensus 51 ~VkvGD~Vlf~~-y~g~ev~~dg~-~y~ii~~~DI 83 (91)
.+++||.|+-.. .-|+=+.++++ .++.+..+.+
T Consensus 36 sLk~GD~VvT~GGi~G~V~~I~~~~~~v~le~~gv 70 (113)
T PRK06531 36 AIQKGDEVVTIGGLYGTVDEVDTEAKTIVLDVDGV 70 (113)
T ss_pred hcCCCCEEEECCCcEEEEEEEecCCCEEEEEECCE
Confidence 578888887543 55554555442 3444443333
No 193
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=29.63 E-value=82 Score=19.75 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=16.4
Q ss_pred CcccCCCEEEcCCCCceEEEECCEEEEEEecC
Q psy12488 50 PVVNVGDKVLLPKFGGTKIEVEGQELHLFKEA 81 (91)
Q Consensus 50 ~~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~ 81 (91)
+.|+..|.-- +--|..|.+||+.|++-+..
T Consensus 56 L~v~~~d~~~--P~~gd~v~~dG~~y~V~~~~ 85 (95)
T PF13856_consen 56 LYVFSSDYPK--PRRGDRVVIDGESYTVTRFQ 85 (95)
T ss_dssp EEE--SS-------TT-EEEETTEEEEEEEEE
T ss_pred EEEEcCCCCC--CCCCCEEEECCeEEEEeEEe
Confidence 4566666322 45578889999999987644
No 194
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=29.63 E-value=1.2e+02 Score=18.05 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=16.0
Q ss_pred CCCEEEcCCCCceEEEECCEEEEE
Q psy12488 54 VGDKVLLPKFGGTKIEVEGQELHL 77 (91)
Q Consensus 54 vGD~Vlf~~y~g~ev~~dg~~y~i 77 (91)
..=+|.+..-++.++++||+.+=+
T Consensus 38 ~~~~i~iGna~~v~v~~nG~~~~~ 61 (77)
T PF13464_consen 38 EPFRIRIGNAGAVEVTVNGKPVDL 61 (77)
T ss_pred CCEEEEEeCCCcEEEEECCEECCC
Confidence 333444455567889999988765
No 195
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=29.61 E-value=88 Score=20.80 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=20.6
Q ss_pred eEEEEEEcCCeeCCCCeEecC--cccCCCEEEcC
Q psy12488 30 NAVVVAVGPGARTPNGEYIKP--VVNVGDKVLLP 61 (91)
Q Consensus 30 ~G~VVAVG~G~~~~~G~~~p~--~VkvGD~Vlf~ 61 (91)
...-|.+|+.-...+=.+.|. .|++||+|.|.
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P~~ltV~~GdTVtw~ 55 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDPPAIRVDPGTTVVWE 55 (115)
T ss_pred ceEEEEecccCCCCceeEeCCEEEECCCCEEEEE
Confidence 345688886332111145665 79999999996
No 196
>PF11901 DUF3421: Protein of unknown function (DUF3421); InterPro: IPR024518 This domain of unknown function is found in the fish toxin Natterin [] and in uncharacterised proteins.
Probab=29.48 E-value=42 Score=22.21 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=35.1
Q ss_pred ecCCccc--cceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEEE
Q psy12488 20 IPEKAQQ--EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEV 70 (91)
Q Consensus 20 LP~~~~~--k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~ 70 (91)
+|..|-. ....|+.+-||-... +|..+|-.|.++..+.|=+|.|.|+.+
T Consensus 68 iP~~av~~G~~~~Ge~lyIgR~~~--~g~~~~GKv~~s~~~~~ip~gG~E~~~ 118 (119)
T PF11901_consen 68 IPPNAVVGGRTEDGEPLYIGRAHY--NGSLIPGKVHPSHKCCYIPYGGKEISF 118 (119)
T ss_pred cCCCcEEcccccCCCEEEEEEEEE--CCeeEEEEEEcCCCEEEEEECCEEEEc
Confidence 4544432 345577777776654 577788888888999999999888765
No 197
>PF06236 MelC1: Tyrosinase co-factor MelC1; InterPro: IPR010928 This family consists of several tyrosinase co-factor MELC1 proteins from a number of Streptomyces species. The melanin operon (melC) of Streptomyces antibioticus contains two genes, melC1 and melC2 (apotyrosinase). It is thought that MelC1 forms a transient binary complex with the downstream apotyrosinase MelC2 to facilitate the incorporation of copper ion and the secretion of tyrosinase indicating that MelC1 is a chaperone for the apotyrosinase MelC2 [].; GO: 0005507 copper ion binding, 0042438 melanin biosynthetic process; PDB: 1WX4_B 2ZWD_B 2ZMZ_B 1WX2_B 1WX5_D 3AWX_B 3AWS_B 2ZMY_B 3AX0_B 2ZWG_B ....
Probab=29.33 E-value=75 Score=21.91 Aligned_cols=18 Identities=33% Similarity=0.850 Sum_probs=14.0
Q ss_pred ceEEEECCEEEEEEecCc
Q psy12488 65 GTKIEVEGQELHLFKEAD 82 (91)
Q Consensus 65 g~ev~~dg~~y~ii~~~D 82 (91)
+.+|.+||.++.+||..|
T Consensus 70 ~~~V~IDGr~LhvMr~AD 87 (125)
T PF06236_consen 70 GYEVTIDGRPLHVMRRAD 87 (125)
T ss_dssp SEEEEETTEEE-EEE-TT
T ss_pred ceEEEECCeEeeeEEcCC
Confidence 468999999999999876
No 198
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=29.31 E-value=67 Score=21.73 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=23.7
Q ss_pred eEEEEEEcCCeeC-CCCeEecC-cccCCCEEEcCCCCceEEEE
Q psy12488 30 NAVVVAVGPGART-PNGEYIKP-VVNVGDKVLLPKFGGTKIEV 70 (91)
Q Consensus 30 ~G~VVAVG~G~~~-~~G~~~p~-~VkvGD~Vlf~~y~g~ev~~ 70 (91)
.|.++=.|.-... ..+-+..+ .+++||.|.+..-.|....|
T Consensus 49 ~Gn~viaGH~~~~g~~~~F~~L~~l~~GD~I~v~~~~g~~~~Y 91 (144)
T cd05829 49 KGTAVLAGHVDSRGGPAVFFRLGDLRKGDKVEVTRADGQTATF 91 (144)
T ss_pred CCCEEEEEecCCCCCChhhcchhcCCCCCEEEEEECCCCEEEE
Confidence 4666666652211 11223333 89999999998855544433
No 199
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=29.05 E-value=49 Score=19.75 Aligned_cols=22 Identities=36% Similarity=0.330 Sum_probs=14.5
Q ss_pred CCCCeEecC-cccCCCEEEcCCC
Q psy12488 42 TPNGEYIKP-VVNVGDKVLLPKF 63 (91)
Q Consensus 42 ~~~G~~~p~-~VkvGD~Vlf~~y 63 (91)
+.+|..+|+ ++++||.|+-.+.
T Consensus 11 ~~~gg~~~i~~l~~g~~V~~~~~ 33 (100)
T smart00306 11 TEDGGIKKIEELEEGDKVLALDE 33 (100)
T ss_pred cCCCCEEEHHHcCCCCEEEEecC
Confidence 345455566 7888888886553
No 200
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=29.00 E-value=1.1e+02 Score=22.09 Aligned_cols=11 Identities=27% Similarity=0.298 Sum_probs=9.0
Q ss_pred cccCCCEEEcC
Q psy12488 51 VVNVGDKVLLP 61 (91)
Q Consensus 51 ~VkvGD~Vlf~ 61 (91)
.+++||+|+..
T Consensus 77 ~~~~Gd~V~~~ 87 (329)
T cd08294 77 KFPVGTIVVAS 87 (329)
T ss_pred CCCCCCEEEee
Confidence 57899999863
No 201
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=28.91 E-value=1.2e+02 Score=21.87 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=22.7
Q ss_pred CCCeEecCcccCCCEEEcCCCCceEEEE-CCEEEE
Q psy12488 43 PNGEYIKPVVNVGDKVLLPKFGGTKIEV-EGQELH 76 (91)
Q Consensus 43 ~~G~~~p~~VkvGD~Vlf~~y~g~ev~~-dg~~y~ 76 (91)
.+|+.....+++||.|+++++..-.+.- .++.+.
T Consensus 115 ~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~ 149 (191)
T PRK04190 115 PEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLV 149 (191)
T ss_pred CCCcEEEEEECCCCEEEECCCCcEEeEECCCCCEE
Confidence 3455566789999999999977644433 334433
No 202
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=28.70 E-value=55 Score=21.01 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=12.6
Q ss_pred eEecCcccCCCEEEcCC
Q psy12488 46 EYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 46 ~~~p~~VkvGD~Vlf~~ 62 (91)
.+++-++++||+|+..-
T Consensus 33 ~Lv~~~v~~GdyVLVHv 49 (82)
T COG0298 33 DLVGEEVKVGDYVLVHV 49 (82)
T ss_pred eeecCccccCCEEEEEe
Confidence 34555899999999753
No 203
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region []. This entry represents the C-terminal region of the Orn/DAP/Arg decarboxylases.; GO: 0003824 catalytic activity; PDB: 1TWI_B 1TUF_A 3MT1_A 3N2B_C 2O0T_A 1HKW_A 1HKV_A 3VAB_A 3N2O_A 7ODC_A ....
Probab=28.58 E-value=51 Score=20.66 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=20.3
Q ss_pred EEEEEcCCeeCC----CCeEecCcccCCCEEEcCCCCc
Q psy12488 32 VVVAVGPGARTP----NGEYIKPVVNVGDKVLLPKFGG 65 (91)
Q Consensus 32 ~VVAVG~G~~~~----~G~~~p~~VkvGD~Vlf~~y~g 65 (91)
.+.=.|+-+... .....|..+++||.++|..-++
T Consensus 59 ~~~i~GptC~~~D~i~~~~~lP~~l~~GD~l~f~~~GA 96 (116)
T PF00278_consen 59 PSTIWGPTCDSGDVIARDVMLPKELEVGDWLVFENMGA 96 (116)
T ss_dssp EEEEEESSSSTTSEEEEEEEEESTTTTT-EEEESS-SS
T ss_pred EEEEEECCcCCCceEeeeccCCCCCCCCCEEEEecCcc
Confidence 444478766432 1233455899999999988443
No 204
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=27.84 E-value=67 Score=21.46 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=15.3
Q ss_pred cccCCCEEEcCCCCc---eEEE
Q psy12488 51 VVNVGDKVLLPKFGG---TKIE 69 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~g---~ev~ 69 (91)
.+++||+|++....| +.|+
T Consensus 26 tL~~GD~Iv~g~~~Gpi~tkVR 47 (110)
T cd03703 26 TLREGDTIVVCGLNGPIVTKVR 47 (110)
T ss_pred eEecCCEEEEccCCCCceEEEe
Confidence 689999999988776 5554
No 205
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=27.83 E-value=78 Score=21.14 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=10.4
Q ss_pred cccCCCEEEcCC-CCceEEEEC
Q psy12488 51 VVNVGDKVLLPK-FGGTKIEVE 71 (91)
Q Consensus 51 ~VkvGD~Vlf~~-y~g~ev~~d 71 (91)
.+++||+|+... .-|+=+.++
T Consensus 38 ~Lk~GD~VvT~gGi~G~V~~I~ 59 (109)
T PRK05886 38 SLQPGDRVHTTSGLQATIVGIT 59 (109)
T ss_pred hcCCCCEEEECCCeEEEEEEEe
Confidence 456666665543 444434443
No 206
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=27.43 E-value=27 Score=28.99 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=21.6
Q ss_pred eeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCC
Q psy12488 16 GGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKF 63 (91)
Q Consensus 16 ~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y 63 (91)
.||.||..+..-...| .... .-++++||.|+|...
T Consensus 404 ~GI~LPR~s~~Q~~~G------~~Vs-------~selqpGDLVFF~~~ 438 (481)
T PRK13914 404 AGISLPRTSGAQYAST------TRIS-------ESQAKPGDLVFFDYG 438 (481)
T ss_pred cCCCCCCChHHHHhcC------cccc-------cccCCCCCEEEeCCC
Confidence 5899998764322222 1111 127999999999743
No 207
>PRK06033 hypothetical protein; Validated
Probab=27.36 E-value=1.5e+02 Score=18.48 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=19.4
Q ss_pred cccCCCEEEcCCCCc--eEEEECCEEEEE
Q psy12488 51 VVNVGDKVLLPKFGG--TKIEVEGQELHL 77 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~g--~ev~~dg~~y~i 77 (91)
.+++||.+-+..... .++.++|...+.
T Consensus 27 ~L~~GDVI~L~~~~~~~v~v~V~~~~~f~ 55 (83)
T PRK06033 27 RMGRGAVIPLDATEADEVWILANNHPIAR 55 (83)
T ss_pred CCCCCCEEEeCCCCCCcEEEEECCEEEEE
Confidence 788999999987543 566778865543
No 208
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=27.14 E-value=27 Score=21.81 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=17.5
Q ss_pred CcccCCCEEEcCCCCc-eE--EEECCEEEEEEe
Q psy12488 50 PVVNVGDKVLLPKFGG-TK--IEVEGQELHLFK 79 (91)
Q Consensus 50 ~~VkvGD~Vlf~~y~g-~e--v~~dg~~y~ii~ 79 (91)
.+.++||.++|..... .. |-+++..++--.
T Consensus 50 ~~~~pGDlif~~~~~~~~Hvgiy~g~~~~iha~ 82 (105)
T PF00877_consen 50 SELQPGDLIFFKGGGGISHVGIYLGDGKFIHAS 82 (105)
T ss_dssp GG-TTTEEEEEEGTGGEEEEEEEEETTEEEEEE
T ss_pred hcCCcccEEEEeCCccCCEeEEEEeCCeEEEeC
Confidence 3899999999988221 22 334555555444
No 209
>PRK06788 flagellar motor switch protein; Validated
Probab=26.75 E-value=1.4e+02 Score=20.17 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=30.5
Q ss_pred cceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCc--eEEEECCEEEE
Q psy12488 27 EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGG--TKIEVEGQELH 76 (91)
Q Consensus 27 k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g--~ev~~dg~~y~ 76 (91)
....-..+.+|.-...-. -=+.+++||.|.++...+ .++.++|..++
T Consensus 33 ~v~V~v~aeLG~t~ltl~---DlL~L~vGDVI~Ldk~~~dpv~v~Vng~~~f 81 (119)
T PRK06788 33 DISIELGVKLGKASITLG---DVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 (119)
T ss_pred cCceEEEEEEecceecHH---HHhCCCCCCEEEeCCcCCCCEEEEECCEEEE
Confidence 345566777787654310 013789999999988665 45667886554
No 210
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=26.69 E-value=1.6e+02 Score=17.98 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=22.2
Q ss_pred eeEEecCCcc---ccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcC
Q psy12488 16 GGVLIPEKAQ---QEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61 (91)
Q Consensus 16 ~GI~LP~~~~---~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 61 (91)
+|.+|-+... .....|.-|..+. +..+++||+|.+.
T Consensus 16 ~GffiQd~~~d~~~~ts~gifV~~~~----------~~~~~~Gd~V~vt 54 (78)
T cd04486 16 GGFYIQDEDGDGDPATSEGIFVYTGS----------GADVAVGDLVRVT 54 (78)
T ss_pred CEEEEEcCCCCCCCcccceEEEecCC----------CCCCCCCCEEEEE
Confidence 5777766521 1344565555543 2379999999884
No 211
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal. These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.
Probab=26.68 E-value=58 Score=19.24 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=11.3
Q ss_pred EecCcccCCCEEEcCCC
Q psy12488 47 YIKPVVNVGDKVLLPKF 63 (91)
Q Consensus 47 ~~p~~VkvGD~Vlf~~y 63 (91)
.+|+-++.||+|.++--
T Consensus 33 ~VP~FI~~Gd~I~V~T~ 49 (56)
T smart00841 33 QVPLFINEGDKIKVDTR 49 (56)
T ss_pred EcCCcccCCCEEEEECC
Confidence 36677777877766543
No 212
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=26.55 E-value=1e+02 Score=23.90 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=21.1
Q ss_pred EEEEEcCCeeCC----CCeEecCcccCCCEEEcCCCC
Q psy12488 32 VVVAVGPGARTP----NGEYIKPVVNVGDKVLLPKFG 64 (91)
Q Consensus 32 ~VVAVG~G~~~~----~G~~~p~~VkvGD~Vlf~~y~ 64 (91)
.+.=+||-+... .....| .+++||.++|..-+
T Consensus 339 ~~~v~G~~C~~~D~l~~~~~lp-~l~~GD~l~~~~~G 374 (417)
T TIGR01048 339 VADVVGPLCESGDVLARDRELP-EVEPGDLLAVFDAG 374 (417)
T ss_pred EEEEEeCCcCCCCEEeeccCCC-CCCCCCEEEEeCCC
Confidence 456678866432 223344 79999999997733
No 213
>PRK05610 rpsQ 30S ribosomal protein S17; Reviewed
Probab=26.42 E-value=38 Score=21.51 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=10.7
Q ss_pred cccCCCEEEcCC
Q psy12488 51 VVNVGDKVLLPK 62 (91)
Q Consensus 51 ~VkvGD~Vlf~~ 62 (91)
.+++||.|.+.+
T Consensus 53 ~~k~GD~V~I~e 64 (84)
T PRK05610 53 EAKIGDVVRIME 64 (84)
T ss_pred CCCCCCEEEEEE
Confidence 799999999975
No 214
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=26.33 E-value=79 Score=18.91 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=17.8
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCC
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~ 62 (91)
...|.|.-.- .+|+ +..+++||.++|++
T Consensus 31 vleG~v~it~-----~~G~--~~~~~aGD~~~~p~ 58 (74)
T PF05899_consen 31 VLEGEVTITD-----EDGE--TVTFKAGDAFFLPK 58 (74)
T ss_dssp EEEEEEEEEE-----TTTE--EEEEETTEEEEE-T
T ss_pred EEEeEEEEEE-----CCCC--EEEEcCCcEEEECC
Confidence 3445555443 2443 36899999999998
No 215
>PRK08433 flagellar motor switch protein; Validated
Probab=26.24 E-value=1.5e+02 Score=19.75 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=28.1
Q ss_pred eeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCC--ceEEEECCEEEEE
Q psy12488 29 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG--GTKIEVEGQELHL 77 (91)
Q Consensus 29 ~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~--g~ev~~dg~~y~i 77 (91)
..-..+.+|.-...- .-=+.+++||.+.+.... -.++.++|...+.
T Consensus 33 ~VeV~v~LG~t~itl---~dlL~Lq~GDVI~Ld~~~~e~v~v~V~g~~~f~ 80 (111)
T PRK08433 33 EVDFSAELGTTQISL---LEILKFEKGSVIDLEKPAGESVELYINGRIIGK 80 (111)
T ss_pred eeEEEEEEecccccH---HHHhCCCCCCEEEeCCCCCCCEEEEECCEEEEE
Confidence 344455566544320 011378999999998754 4677788876554
No 216
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=26.16 E-value=36 Score=21.31 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=12.7
Q ss_pred CeEecCcccCCCEEEcCCCC
Q psy12488 45 GEYIKPVVNVGDKVLLPKFG 64 (91)
Q Consensus 45 G~~~p~~VkvGD~Vlf~~y~ 64 (91)
........+.||.|||+.+-
T Consensus 63 ~~~~~~~p~~G~lvlFPs~l 82 (101)
T PF13759_consen 63 SPYYIVEPEEGDLVLFPSWL 82 (101)
T ss_dssp -SEEEE---TTEEEEEETTS
T ss_pred CceEEeCCCCCEEEEeCCCC
Confidence 44556788999999999864
No 217
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=26.14 E-value=58 Score=19.24 Aligned_cols=18 Identities=11% Similarity=0.205 Sum_probs=12.8
Q ss_pred EecCcccCCCEEEcCCCC
Q psy12488 47 YIKPVVNVGDKVLLPKFG 64 (91)
Q Consensus 47 ~~p~~VkvGD~Vlf~~y~ 64 (91)
.+|+-++.||+|..+--.
T Consensus 33 ~VP~FI~~Gd~I~V~T~~ 50 (56)
T cd05794 33 QVPLFIKEGEKIKVDTRT 50 (56)
T ss_pred EcCCeecCCCEEEEECCC
Confidence 367788888888775433
No 218
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=26.09 E-value=63 Score=23.93 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=17.4
Q ss_pred EEEEEEcC-CeeCCCCeEecCcccCCCEEEcCCC
Q psy12488 31 AVVVAVGP-GARTPNGEYIKPVVNVGDKVLLPKF 63 (91)
Q Consensus 31 G~VVAVG~-G~~~~~G~~~p~~VkvGD~Vlf~~y 63 (91)
-.|+.+|. |..+ ..+++||.|+..++
T Consensus 77 ~~II~tgsaGsl~-------~~l~~GDiVi~~d~ 103 (261)
T PRK08666 77 ERILATSAVGSLN-------PNMKPGDFVILDQF 103 (261)
T ss_pred CEEEEeccccccC-------CCCCCCCEEeehhh
Confidence 35566665 3332 36999999998875
No 219
>PTZ00316 profilin; Provisional
Probab=25.72 E-value=99 Score=21.86 Aligned_cols=15 Identities=7% Similarity=0.253 Sum_probs=13.0
Q ss_pred eEEEECCEEEEEEec
Q psy12488 66 TKIEVEGQELHLFKE 80 (91)
Q Consensus 66 ~ev~~dg~~y~ii~~ 80 (91)
.=|.++|++|+++|.
T Consensus 60 ~Gi~l~G~KY~~lr~ 74 (150)
T PTZ00316 60 SGVTIYGVKFFGLQS 74 (150)
T ss_pred CCEEEcceEEEEEEe
Confidence 458999999999985
No 220
>PRK10377 PTS system glucitol/sorbitol-specific transporter subunit IIA; Provisional
Probab=25.63 E-value=2.1e+02 Score=19.20 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=7.4
Q ss_pred ceEEEECCEEEEEE
Q psy12488 65 GTKIEVEGQELHLF 78 (91)
Q Consensus 65 g~ev~~dg~~y~ii 78 (91)
|..+++|+++|.+-
T Consensus 55 Gd~l~i~~~~Y~It 68 (120)
T PRK10377 55 GLQFELGQHRYPVT 68 (120)
T ss_pred CCEEEECCEEEEEE
Confidence 34455566666543
No 221
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=25.46 E-value=93 Score=20.37 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=27.7
Q ss_pred EEEEEEcCCeeCCCCeEecC-cccCCCEEEcCCCCceEEEECCEEEEEEecCc
Q psy12488 31 AVVVAVGPGARTPNGEYIKP-VVNVGDKVLLPKFGGTKIEVEGQELHLFKEAD 82 (91)
Q Consensus 31 G~VVAVG~G~~~~~G~~~p~-~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~D 82 (91)
|-++=.|.-......-+..+ .+++||.|.+... +...+|.=..-.+++.+|
T Consensus 43 gn~viaGH~~~~~~~~F~~L~~l~~Gd~v~v~~~-~~~~~Y~V~~~~~v~~~~ 94 (126)
T cd06166 43 GNFAIAGHRSYTYGRIFNRLDEVEKGDEIKVTTK-NGTYKYKITSIFVVEPTD 94 (126)
T ss_pred ceEEEEeCcCCCCCcccCChHHCCCCCEEEEEEC-CEEEEEEEEEEEEECCCc
Confidence 66666665321111122333 7999999999876 444444433334455554
No 222
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=25.41 E-value=66 Score=20.06 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=11.4
Q ss_pred cccCCCEEEcCCCC
Q psy12488 51 VVNVGDKVLLPKFG 64 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~ 64 (91)
.+++||.|++..-.
T Consensus 2 ~~~vGD~V~v~~~~ 15 (119)
T PF01426_consen 2 TYKVGDFVYVKPDD 15 (119)
T ss_dssp EEETTSEEEEECTS
T ss_pred EEeCCCEEEEeCCC
Confidence 47899999997755
No 223
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=25.04 E-value=72 Score=23.38 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=19.9
Q ss_pred eecceeEEecCCccccceeEEEEEEcCCeeC
Q psy12488 12 LLFPGGVLIPEKAQQEVNNAVVVAVGPGART 42 (91)
Q Consensus 12 ~~T~~GI~LP~~~~~k~~~G~VVAVG~G~~~ 42 (91)
..+.+|+.||... ...| +..++..+..
T Consensus 78 ~i~i~g~~IPkgt---~l~G-~~~~~~~Rl~ 104 (200)
T PF12508_consen 78 DIQIGGILIPKGT---YLYG-VASFQGQRLL 104 (200)
T ss_pred ceEECCEEeCCCC---EEEE-EEeeeccEEE
Confidence 3455899999554 6888 8888887764
No 224
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=24.93 E-value=44 Score=20.20 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=12.5
Q ss_pred ecCcccCCCEEEcCCC
Q psy12488 48 IKPVVNVGDKVLLPKF 63 (91)
Q Consensus 48 ~p~~VkvGD~Vlf~~y 63 (91)
..+-++.||+|.+.+|
T Consensus 50 ~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 50 RKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHcCCCCCCEEEEccE
Confidence 3457999999998765
No 225
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=24.81 E-value=44 Score=19.05 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=10.4
Q ss_pred CcccCCCEEEcCC
Q psy12488 50 PVVNVGDKVLLPK 62 (91)
Q Consensus 50 ~~VkvGD~Vlf~~ 62 (91)
..+.+||.|++..
T Consensus 36 ~~~~VGD~V~~~~ 48 (68)
T cd04466 36 NPPAVGDRVEFEP 48 (68)
T ss_pred CCCCCCcEEEEEE
Confidence 3578999999854
No 226
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=24.75 E-value=1.7e+02 Score=17.65 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=19.0
Q ss_pred cccCCCEEEcCCCC--ceEEEECCEEEE
Q psy12488 51 VVNVGDKVLLPKFG--GTKIEVEGQELH 76 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~--g~ev~~dg~~y~ 76 (91)
.+++||.+-+.... -.++.++|...+
T Consensus 28 ~L~~Gdvi~L~~~~~~~v~l~v~g~~~~ 55 (77)
T TIGR02480 28 KLGEGSVIELDKLAGEPLDILVNGRLIA 55 (77)
T ss_pred cCCCCCEEEcCCCCCCcEEEEECCEEEE
Confidence 78999999998643 356777886544
No 227
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=24.67 E-value=68 Score=23.73 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=16.9
Q ss_pred EEEEEcC-CeeCCCCeEecCcccCCCEEEcCCC
Q psy12488 32 VVVAVGP-GARTPNGEYIKPVVNVGDKVLLPKF 63 (91)
Q Consensus 32 ~VVAVG~-G~~~~~G~~~p~~VkvGD~Vlf~~y 63 (91)
.|+.+|. |..+ ..+++||.|+..++
T Consensus 85 ~II~~gsaGsl~-------~~l~~GDiVi~~d~ 110 (249)
T TIGR01700 85 TLVVTNAAGGIN-------PEFKVGDLMLIRDH 110 (249)
T ss_pred EEEEecccccCC-------CCCCCCCEEEEhhH
Confidence 4566665 3332 36999999998774
No 228
>KOG0276|consensus
Probab=24.66 E-value=2.6e+02 Score=24.62 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=31.8
Q ss_pred eeccee-EEecCCccccceeEEEEEEcCCeeCCCCeEecCcccC-CCEEEcC
Q psy12488 12 LLFPGG-VLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNV-GDKVLLP 61 (91)
Q Consensus 12 ~~T~~G-I~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~Vkv-GD~Vlf~ 61 (91)
....+| |+.... ...+....-++|......+|++.|+.||. |-.=+||
T Consensus 305 sMd~~gKIiwa~~--~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyP 354 (794)
T KOG0276|consen 305 SMDSNGKIIWAVH--SEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYP 354 (794)
T ss_pred eecCCccEEEEcC--ceeeeeeceeccCcccccCCccccchhhhccccccch
Confidence 445566 666533 34567777788888777899999998885 4433444
No 229
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=23.97 E-value=1e+02 Score=21.44 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=21.6
Q ss_pred cccCCCEEEcCCCCceEEEECCEEEEEEecCcEE
Q psy12488 51 VVNVGDKVLLPKFGGTKIEVEGQELHLFKEADLL 84 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~DIl 84 (91)
.++.||.+++..- |..--..|..++|+....|+
T Consensus 75 ~~q~GDI~I~g~~-g~S~G~~GHtgif~~~~~iI 107 (145)
T PF05382_consen 75 NLQRGDIFIWGRR-GNSAGAGGHTGIFMDNDTII 107 (145)
T ss_pred cccCCCEEEEcCC-CCCCCCCCeEEEEeCCCcEE
Confidence 6899999998553 21112356777777766665
No 230
>cd02558 PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.
Probab=23.96 E-value=98 Score=22.70 Aligned_cols=11 Identities=18% Similarity=-0.043 Sum_probs=8.3
Q ss_pred cccCCCEEEcC
Q psy12488 51 VVNVGDKVLLP 61 (91)
Q Consensus 51 ~VkvGD~Vlf~ 61 (91)
.++.||+|.+.
T Consensus 16 ~l~~gd~i~~~ 26 (246)
T cd02558 16 PYRPGTFVWYY 26 (246)
T ss_pred eecCCCEEEEe
Confidence 68888888653
No 231
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=23.94 E-value=38 Score=22.41 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=14.1
Q ss_pred eEecCcccCCCEEEcCCC
Q psy12488 46 EYIKPVVNVGDKVLLPKF 63 (91)
Q Consensus 46 ~~~p~~VkvGD~Vlf~~y 63 (91)
..++..+++||.|+|..+
T Consensus 178 ~~~~~~~~~Gdvl~~~~~ 195 (211)
T PF05721_consen 178 EWVPVPMKAGDVLFFHSR 195 (211)
T ss_dssp GCEEE-BSTTEEEEEETT
T ss_pred ceEEeecCCCeEEEEcCC
Confidence 446778999999999874
No 232
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=23.74 E-value=98 Score=18.58 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=11.4
Q ss_pred EecCcccCCCEEEc
Q psy12488 47 YIKPVVNVGDKVLL 60 (91)
Q Consensus 47 ~~p~~VkvGD~Vlf 60 (91)
..|..++.||.+.+
T Consensus 29 ~LP~~~keGDvl~i 42 (71)
T PF11213_consen 29 RLPEGAKEGDVLEI 42 (71)
T ss_pred HCCCCCCcccEEEE
Confidence 46778999998877
No 233
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=23.65 E-value=80 Score=23.21 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=18.1
Q ss_pred eEEEEEEcC-CeeCCCCeEecCcccCCCEEEcCCC
Q psy12488 30 NAVVVAVGP-GARTPNGEYIKPVVNVGDKVLLPKF 63 (91)
Q Consensus 30 ~G~VVAVG~-G~~~~~G~~~p~~VkvGD~Vlf~~y 63 (91)
.-.|+.+|. |..+ ..+++||.|+-.++
T Consensus 83 v~~II~~GsaGsl~-------~~l~~GDiVI~~~~ 110 (248)
T TIGR01697 83 VEILVVTNAAGGLN-------PDFKPGDLMIIKDH 110 (248)
T ss_pred CCEEEEecccccCC-------CCCCCCCEEEEhhh
Confidence 345666666 3332 36999999998774
No 234
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=23.26 E-value=46 Score=22.21 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=10.5
Q ss_pred cccCCCEEEcCC
Q psy12488 51 VVNVGDKVLLPK 62 (91)
Q Consensus 51 ~VkvGD~Vlf~~ 62 (91)
++++||.|+|.-
T Consensus 76 ~~qpGDlvff~~ 87 (134)
T TIGR02219 76 AAQPGDVLVFRW 87 (134)
T ss_pred cCCCCCEEEEee
Confidence 789999999963
No 235
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]
Probab=23.24 E-value=1.1e+02 Score=23.23 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=24.3
Q ss_pred cccCCCEEEcCCCC-c--eEEEEC--CEEEEEEecCc
Q psy12488 51 VVNVGDKVLLPKFG-G--TKIEVE--GQELHLFKEAD 82 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~-g--~ev~~d--g~~y~ii~~~D 82 (91)
.+|-||.|.|+--+ | +++.++ +..-+|+|..|
T Consensus 199 nlkaGq~Vki~~naqG~Vt~L~le~~n~~vlF~RQ~D 235 (242)
T COG3061 199 NLKAGQKVKISLNAQGRVTELRLETGNNQVLFTRQSD 235 (242)
T ss_pred hccCCCEEEEEEcCccceEEEEeccCCceEEEEEcCC
Confidence 79999999997743 4 456663 45888999877
No 236
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=23.19 E-value=1.2e+02 Score=22.96 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=21.8
Q ss_pred cccCCCEEEcCCCCceE--EEE-------CCEEEEEEecCcEE
Q psy12488 51 VVNVGDKVLLPKFGGTK--IEV-------EGQELHLFKEADLL 84 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~g~e--v~~-------dg~~y~ii~~~DIl 84 (91)
++++||.|.++++.|+- +.+ .+.+.++++.+.++
T Consensus 129 pf~vGD~I~i~~~~G~V~~I~~r~T~i~t~d~~~v~IPNs~~~ 171 (286)
T PRK10334 129 PFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKII 171 (286)
T ss_pred CCCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEcchHhc
Confidence 78999999999888742 222 33445555555544
No 237
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=22.86 E-value=1.3e+02 Score=24.82 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=24.7
Q ss_pred cceeEEEEEEcCCeeC---CCCeEecCcccCCCEEE
Q psy12488 27 EVNNAVVVAVGPGART---PNGEYIKPVVNVGDKVL 59 (91)
Q Consensus 27 k~~~G~VVAVG~G~~~---~~G~~~p~~VkvGD~Vl 59 (91)
=|.-|.|+. |....+ -+|+-.|...++||.|+
T Consensus 124 iP~Dg~v~~-g~~~vdes~lTGEs~pv~k~~gd~V~ 158 (562)
T TIGR01511 124 IPVDGTVIE-GESEVDESLVTGESLPVPKKVGDPVI 158 (562)
T ss_pred ecCceEEEE-CceEEehHhhcCCCCcEEcCCCCEEE
Confidence 367777777 665555 38999999999999984
No 238
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=22.82 E-value=2e+02 Score=19.74 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=13.3
Q ss_pred cccCCCEEEcCCCCceEEEEC
Q psy12488 51 VVNVGDKVLLPKFGGTKIEVE 71 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~g~ev~~d 71 (91)
++++||+|.+..+.|.=.++.
T Consensus 60 pf~vGD~I~i~~~~G~V~~I~ 80 (206)
T PF00924_consen 60 PFKVGDRIEIGGVEGRVEEIG 80 (206)
T ss_dssp SS-TT-EEESSS-EEEEEEE-
T ss_pred CccCCCEEEEEEeehHHHhcC
Confidence 789999999998888544443
No 239
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=22.74 E-value=86 Score=21.46 Aligned_cols=13 Identities=31% Similarity=0.309 Sum_probs=11.1
Q ss_pred cccCCCEEEcCCC
Q psy12488 51 VVNVGDKVLLPKF 63 (91)
Q Consensus 51 ~VkvGD~Vlf~~y 63 (91)
.|++||+|-|-..
T Consensus 57 ~v~pGDTVtw~~~ 69 (128)
T COG3794 57 TVKPGDTVTWVNT 69 (128)
T ss_pred EECCCCEEEEEEC
Confidence 8999999999553
No 240
>PF02989 DUF228: Lyme disease proteins of unknown function; InterPro: IPR004239 This group comprises proteins of unknown function from Borrelia burgdorferi, the causitive organism of Lyme disease.
Probab=22.73 E-value=2e+02 Score=21.13 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=23.9
Q ss_pred ecceeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCC
Q psy12488 13 LFPGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG 64 (91)
Q Consensus 13 ~T~~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~ 64 (91)
-|..+-++|-+. ..+|.-+|-.+ .+|.||+..|++.+
T Consensus 105 fs~tAtVvPITn---nFegyLvak~~------------~ik~gdkL~fN~~G 141 (184)
T PF02989_consen 105 FSKTATVVPITN---NFEGYLVAKDS------------TIKAGDKLIFNKDG 141 (184)
T ss_pred ccceEEEEeccC---CeEEEEEECCC------------CCCcCcEEEecCCC
Confidence 344445555443 35565555432 79999999999875
No 241
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=22.70 E-value=1.3e+02 Score=23.43 Aligned_cols=50 Identities=20% Similarity=0.419 Sum_probs=33.2
Q ss_pred ceeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCceEEEECCEEEEE
Q psy12488 15 PGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQELHL 77 (91)
Q Consensus 15 ~~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g~ev~~dg~~y~i 77 (91)
-+|++.|-..+++...| ++|-|.. +..|=+|-.....++.|.+||+++=+
T Consensus 11 ITgfF~pv~~~~p~~SG---SiGaGv~----------l~~gv~v~v~~~~~~~v~~Ng~~~d~ 60 (283)
T COG1829 11 ITGFFVPVIGKDPLKSG---SIGAGVA----------LERGVTVEVRFGEGTGVRLNGKKIDL 60 (283)
T ss_pred eEEEEEeccCCCCccCC---CcceeEE----------ecCceeEEEEecCCceEEECCeeccc
Confidence 36888887766666666 3455543 55566666667777888888866543
No 242
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=22.00 E-value=46 Score=20.07 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=9.0
Q ss_pred cCcccCCCEEEcCCC
Q psy12488 49 KPVVNVGDKVLLPKF 63 (91)
Q Consensus 49 p~~VkvGD~Vlf~~y 63 (91)
..-++.||+|.+.+|
T Consensus 51 ~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 51 KAGAKEGDTVRIGDY 65 (69)
T ss_dssp TTT--TT-EEEETTE
T ss_pred HcCCCCCCEEEEcCE
Confidence 346899999998765
No 243
>PRK08983 fliN flagellar motor switch protein; Validated
Probab=21.64 E-value=2.2e+02 Score=19.32 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=28.3
Q ss_pred ceeEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCc--eEEEECCEEEE
Q psy12488 28 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGG--TKIEVEGQELH 76 (91)
Q Consensus 28 ~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g--~ev~~dg~~y~ 76 (91)
...-..+.+|.-...- +-=+.+++||.+.+..... .++.++|...+
T Consensus 51 v~V~v~v~LG~t~ltl---~dlL~L~~GDVI~Ld~~~ddpv~v~Vng~~~f 98 (127)
T PRK08983 51 IPVTISMEVGRSFISI---RNLLQLNQGSVVELDRVAGEPLDVMVNGTLIA 98 (127)
T ss_pred CeeEEEEEEecCcccH---HHHhCCCCCCEEEeCCCCCCCEEEEECCEEEE
Confidence 3444556666644321 0113789999999988655 56677886544
No 244
>PRK03760 hypothetical protein; Provisional
Probab=21.30 E-value=72 Score=21.21 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=10.7
Q ss_pred ecCcccCCCEEEcCC
Q psy12488 48 IKPVVNVGDKVLLPK 62 (91)
Q Consensus 48 ~p~~VkvGD~Vlf~~ 62 (91)
....+++||+|.|.+
T Consensus 102 ~~~gi~~Gd~v~~~~ 116 (117)
T PRK03760 102 RVLKVEVGDEIEWID 116 (117)
T ss_pred HHcCCCCCCEEEEee
Confidence 344689999987753
No 245
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=21.23 E-value=51 Score=21.93 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=13.5
Q ss_pred cccCCCEEEcCC-CCceEEEE
Q psy12488 51 VVNVGDKVLLPK-FGGTKIEV 70 (91)
Q Consensus 51 ~VkvGD~Vlf~~-y~g~ev~~ 70 (91)
.|++||+|.|-. -.+-.+..
T Consensus 18 ~V~~GdTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 18 RAAPGDTVTFVPTDKGHNVET 38 (116)
T ss_pred EECCCCEEEEEECCCCeeEEE
Confidence 799999999943 23444443
No 246
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=21.16 E-value=59 Score=18.07 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=5.0
Q ss_pred cccCCCEEE
Q psy12488 51 VVNVGDKVL 59 (91)
Q Consensus 51 ~VkvGD~Vl 59 (91)
.||.||..+
T Consensus 23 ~VkkGd~L~ 31 (50)
T PF13533_consen 23 QVKKGDVLL 31 (50)
T ss_pred EEcCCCEEE
Confidence 466666554
No 247
>TIGR00849 gutA PTS system, glucitol/sorbitol-specific IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria.The system in E.Coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.
Probab=21.10 E-value=2.7e+02 Score=18.74 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=6.5
Q ss_pred ceEEEECCEEEEE
Q psy12488 65 GTKIEVEGQELHL 77 (91)
Q Consensus 65 g~ev~~dg~~y~i 77 (91)
|..+.+|+++|.+
T Consensus 55 Gd~l~i~~~~Y~I 67 (121)
T TIGR00849 55 GQVFMIGGIAYPV 67 (121)
T ss_pred CCEEEECCEEEEE
Confidence 3344455555554
No 248
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=21.06 E-value=1.2e+02 Score=23.76 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=24.7
Q ss_pred cccCCCEEEcCC-CCceEEEECCEEEEEEecCcEEEEee
Q psy12488 51 VVNVGDKVLLPK-FGGTKIEVEGQELHLFKEADLLAVIE 88 (91)
Q Consensus 51 ~VkvGD~Vlf~~-y~g~ev~~dg~~y~ii~~~DIlavi~ 88 (91)
.+++||+|.|.. .++.-+..= .++++++...|.+++.
T Consensus 342 ~l~~gd~v~~r~~~~~~~~~~~-~~~~~~~~~~v~~~~~ 379 (388)
T cd06813 342 RLGIGDPVWFRHAKAGELCERF-NELHLVRGGEIVGTVP 379 (388)
T ss_pred cCCCCCEEEEecCCcchhhhhc-CeEEEEECCEEEEEEe
Confidence 489999999955 334333322 4677788888887653
No 249
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=20.96 E-value=1.7e+02 Score=22.18 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=23.4
Q ss_pred cccCCCEEEcCCCCc-eEEEECCEEEEEEecCcEEEEe
Q psy12488 51 VVNVGDKVLLPKFGG-TKIEVEGQELHLFKEADLLAVI 87 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~g-~ev~~dg~~y~ii~~~DIlavi 87 (91)
.+++||+|.+-+... ..+..- ..|++++.+.+...+
T Consensus 315 ~~~vGd~v~~~p~H~c~t~~~~-~~~~~v~~~~v~~~w 351 (361)
T cd06821 315 RPEIGDVLYGIPRHICPTVALY-DEALVVRDGRIVGTW 351 (361)
T ss_pred CCCCCCEEEEeCCCcCcchhcc-CEEEEEECCEEEEEE
Confidence 489999999966443 334322 457777877666554
No 250
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=20.90 E-value=86 Score=20.48 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=16.9
Q ss_pred eecceeEEecCCccccceeEEEEEEcCCee
Q psy12488 12 LLFPGGVLIPEKAQQEVNNAVVVAVGPGAR 41 (91)
Q Consensus 12 ~~T~~GI~LP~~~~~k~~~G~VVAVG~G~~ 41 (91)
.+-.-|+++|..-.=.....++..|=.|..
T Consensus 23 ~~~TlGVm~pGeY~F~T~~~E~M~vvsG~l 52 (94)
T PF06865_consen 23 SKKTLGVMLPGEYTFGTSAPERMEVVSGEL 52 (94)
T ss_dssp EEEEEEEE-SECEEEEESS-EEEEEEESEE
T ss_pred CcceEEEEeeeEEEEcCCCCEEEEEEEeEE
Confidence 344568888877544455556666655654
No 251
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=20.78 E-value=88 Score=22.81 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=11.1
Q ss_pred cccCCCEEEcCCC
Q psy12488 51 VVNVGDKVLLPKF 63 (91)
Q Consensus 51 ~VkvGD~Vlf~~y 63 (91)
.+++||.|+-.++
T Consensus 91 ~l~~GDlVI~~~~ 103 (241)
T TIGR01694 91 EYPPGDLVVPDQF 103 (241)
T ss_pred CCCCCCEEEEhhH
Confidence 6999999998764
No 252
>PRK12426 elongation factor P; Provisional
Probab=20.77 E-value=1.5e+02 Score=21.43 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=28.8
Q ss_pred CCCeEecCcccCCCEEEcCCCCceEEEE---CCEEEEEEecCc
Q psy12488 43 PNGEYIKPVVNVGDKVLLPKFGGTKIEV---EGQELHLFKEAD 82 (91)
Q Consensus 43 ~~G~~~p~~VkvGD~Vlf~~y~g~ev~~---dg~~y~ii~~~D 82 (91)
.+|..+....+.||++--....-.+..| ||..|+||..+.
T Consensus 45 ~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~~~~FMd~et 87 (185)
T PRK12426 45 DSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGDEYLFLDLGN 87 (185)
T ss_pred CCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCCeEEEecCCC
Confidence 5777777889999998765555455444 788888887653
No 253
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=20.74 E-value=1.3e+02 Score=19.70 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=25.3
Q ss_pred eEEEEEEcCCeeCCCCeEecC-cccCCCEEEcCCCCceEEEECCEEEEEEecCc
Q psy12488 30 NAVVVAVGPGARTPNGEYIKP-VVNVGDKVLLPKFGGTKIEVEGQELHLFKEAD 82 (91)
Q Consensus 30 ~G~VVAVG~G~~~~~G~~~p~-~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~~~D 82 (91)
.|-+|=.|.- +.-+..+ .+++||.|.+... +...+|.=.+...++.+|
T Consensus 43 ~gn~vIaGH~----~~~F~~L~~l~~Gd~i~v~~~-~~~~~Y~V~~~~~v~~~~ 91 (127)
T cd05828 43 GGNIVIAGHR----DTHFRFLGELEPGDIITLQTL-GGTYTYRVTSTRIVDADD 91 (127)
T ss_pred CCcEEEEEeC----chhhhChhcCCCCCEEEEEEC-CEEEEEEEeeEEEECccc
Confidence 4555555542 1223333 7899999999776 554444322333334333
No 254
>PF15436 PGBA_N: Plasminogen-binding protein pgbA N-terminal
Probab=20.56 E-value=2.9e+02 Score=20.67 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=30.5
Q ss_pred eecceeEEecCC-ccccce--eEEEEEEcCCeeC--------CCCeEec---CcccCCCEEEcCCCC
Q psy12488 12 LLFPGGVLIPEK-AQQEVN--NAVVVAVGPGART--------PNGEYIK---PVVNVGDKVLLPKFG 64 (91)
Q Consensus 12 ~~T~~GI~LP~~-~~~k~~--~G~VVAVG~G~~~--------~~G~~~p---~~VkvGD~Vlf~~y~ 64 (91)
..-.||+++-.- ..-... .+.|+++-.|... -..+-.| +..++||.|+|..+.
T Consensus 26 ~vG~SGiV~h~~~~~~~~IiA~a~V~~~~~g~A~~kf~~fd~L~Q~aLP~p~~~pk~GD~vil~~~Y 92 (218)
T PF15436_consen 26 KVGESGIVVHKFDKDHSSIIARAVVISKKNGVAKAKFSVFDSLKQDALPTPKMVPKKGDEVILNYLY 92 (218)
T ss_pred ccCCceEEEEEecCCcceeeeEEEEEEecCCeeEEEEeehhhhhhhcCCCCccccCCCCEEEEeecc
Confidence 445789988655 223334 4445666555322 0111222 278999999998843
No 255
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=20.54 E-value=98 Score=17.22 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=18.8
Q ss_pred cCcccCCCEEEcCCCCceEEEE-CCEEEEE
Q psy12488 49 KPVVNVGDKVLLPKFGGTKIEV-EGQELHL 77 (91)
Q Consensus 49 p~~VkvGD~Vlf~~y~g~ev~~-dg~~y~i 77 (91)
...+++||.++++...--.+.- .++.+.+
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~ 67 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDEPARF 67 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSSEEEE
T ss_pred EeEccCCEEEEECCCCeEEEEECCCCCEEE
Confidence 4589999999998875544433 3344443
No 256
>KOG2107|consensus
Probab=20.43 E-value=1.3e+02 Score=22.02 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=27.0
Q ss_pred eEEEEEEcCCeeC---CCCeEecCcccCCCEEEcCC
Q psy12488 30 NAVVVAVGPGART---PNGEYIKPVVNVGDKVLLPK 62 (91)
Q Consensus 30 ~G~VVAVG~G~~~---~~G~~~p~~VkvGD~Vlf~~ 62 (91)
.-..+--|+|..+ .++..+...|+.||.|+++.
T Consensus 95 eiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPa 130 (179)
T KOG2107|consen 95 EIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPA 130 (179)
T ss_pred heEEEeecceEEeeccCCCCEEEEEEecCCEEEecC
Confidence 4456667888755 67888999999999999997
No 257
>PRK11507 ribosome-associated protein; Provisional
Probab=20.42 E-value=2.1e+02 Score=17.65 Aligned_cols=15 Identities=13% Similarity=0.523 Sum_probs=8.0
Q ss_pred CCceEEEECCEEEEE
Q psy12488 63 FGGTKIEVEGQELHL 77 (91)
Q Consensus 63 y~g~ev~~dg~~y~i 77 (91)
|.|.-|+++|+.|.+
T Consensus 54 ~~GD~V~~~g~~~~v 68 (70)
T PRK11507 54 VAGQTVSFAGHSVQV 68 (70)
T ss_pred CCCCEEEECCEEEEE
Confidence 444455556655554
No 258
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=20.40 E-value=77 Score=25.32 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=14.0
Q ss_pred CCCeEecC-cccCCCEEEcC
Q psy12488 43 PNGEYIKP-VVNVGDKVLLP 61 (91)
Q Consensus 43 ~~G~~~p~-~VkvGD~Vlf~ 61 (91)
++|+.++. ++|+||.|+..
T Consensus 306 ~dG~~vsVt~Lk~GD~VL~~ 325 (344)
T PRK02290 306 PDGKPVSVVDLKPGDEVLGY 325 (344)
T ss_pred CCCCEeeeeecCCCCEEEEE
Confidence 35665554 89999999974
No 259
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=20.36 E-value=1.1e+02 Score=23.24 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=11.5
Q ss_pred cccCCCEEEcCCC
Q psy12488 51 VVNVGDKVLLPKF 63 (91)
Q Consensus 51 ~VkvGD~Vlf~~y 63 (91)
.+++||.|+..++
T Consensus 99 ~~~pGDlVv~~D~ 111 (267)
T PRK08564 99 DYKPGDFVIPDQF 111 (267)
T ss_pred CCCCCCEEeehhh
Confidence 6999999998885
No 260
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=20.19 E-value=1.6e+02 Score=19.69 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=15.0
Q ss_pred cccCCCEEEcCCCCceEEEECCEEEEEEe
Q psy12488 51 VVNVGDKVLLPKFGGTKIEVEGQELHLFK 79 (91)
Q Consensus 51 ~VkvGD~Vlf~~y~g~ev~~dg~~y~ii~ 79 (91)
.+++||+|.| ++..++..|.+.+
T Consensus 88 ~lk~G~~V~F------~~~~~~~~~~i~~ 110 (115)
T PRK09838 88 EIKTGDKVAF------NFVQQGNLSLLQD 110 (115)
T ss_pred cCCCCCEEEE------EEEEcCCcEEEEE
Confidence 5788888876 3455666665543
No 261
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=20.08 E-value=1.9e+02 Score=16.44 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=21.5
Q ss_pred ceeEEecCCccccceeEEEEEEcCCeeCCCCeEecCcccCCCEEE
Q psy12488 15 PGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVL 59 (91)
Q Consensus 15 ~~GI~LP~~~~~k~~~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vl 59 (91)
.-|+.+...... .....|..|.++..-.. ..+++||.|+
T Consensus 13 ~~G~~~~~~~~~-~~~~~V~~v~~~s~a~~-----~gl~~GD~I~ 51 (82)
T cd00992 13 GLGFSLRGGKDS-GGGIFVSRVEPGGPAER-----GGLRVGDRIL 51 (82)
T ss_pred CcCEEEeCcccC-CCCeEEEEECCCChHHh-----CCCCCCCEEE
Confidence 346666543221 23455666666553322 2589999886
No 262
>PRK05698 fliN flagellar motor switch protein; Validated
Probab=20.03 E-value=2.2e+02 Score=20.17 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=27.0
Q ss_pred eEEEEEEcCCeeCCCCeEecCcccCCCEEEcCCCCc--eEEEECCEEEE
Q psy12488 30 NAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGG--TKIEVEGQELH 76 (91)
Q Consensus 30 ~G~VVAVG~G~~~~~G~~~p~~VkvGD~Vlf~~y~g--~ev~~dg~~y~ 76 (91)
.-..+.+|.-...- +-=+.+++||.|.+....+ .+|.++|...+
T Consensus 81 V~lsveLG~t~itl---rdLL~L~~GDVI~Ldk~~~epv~V~VnG~~~f 126 (155)
T PRK05698 81 VSISMEVGSTDINI---RNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 126 (155)
T ss_pred eEEEEEEecCcccH---HHHhCCCCCCEEEeCCCCCCCEEEEECCEEEE
Confidence 34455566543320 0113789999999988766 56777886443
No 263
>PF11963 DUF3477: Protein of unknown function (DUF3477); InterPro: IPR022570 This entry represents the N-terminal region of the coronovirus polyprotein, which contains non-structural protein 1 (Nsp1); the function of Nsp1 is not known.
Probab=20.02 E-value=44 Score=26.57 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=25.0
Q ss_pred cccccccceecceeEEecCCccccceeEEE
Q psy12488 4 SHNKLSIYLLFPGGVLIPEKAQQEVNNAVV 33 (91)
Q Consensus 4 ~~~k~~~e~~T~~GI~LP~~~~~k~~~G~V 33 (91)
.+|||..++.+.-|++-|.++|+.-..|+.
T Consensus 24 a~EkL~nP~~Se~~~~CpttaQ~~~~~g~~ 53 (355)
T PF11963_consen 24 AEEKLDNPSSSEVGGVCPTTAQELETKGIT 53 (355)
T ss_pred hHHhhCCCcccccCcccCchhhccccCcee
Confidence 578999999999999999999876555554
No 264
>PRK00529 elongation factor P; Validated
Probab=20.01 E-value=2.2e+02 Score=20.24 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=24.4
Q ss_pred ceeEEecCCccccceeEEEEEEcCCeeC------------CCC--eEecCcccCCCEEEcCCC
Q psy12488 15 PGGVLIPEKAQQEVNNAVVVAVGPGART------------PNG--EYIKPVVNVGDKVLLPKF 63 (91)
Q Consensus 15 ~~GI~LP~~~~~k~~~G~VVAVG~G~~~------------~~G--~~~p~~VkvGD~Vlf~~y 63 (91)
.-+|-||.+. .=+|+..=|+.+. ++| -.+|+-++.||+|.++--
T Consensus 120 ~i~v~lP~~v-----~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I~v~T~ 177 (186)
T PRK00529 120 PISVELPNFV-----ELEVTETEPGVKGDTASGGTKPATLETGAVVQVPLFINEGEKIKVDTR 177 (186)
T ss_pred EEEEECCCEE-----EEEEEECCCCccCcccCCCcccEEEcCCCEEEeCCeecCCCEEEEECC
Confidence 3466777653 4455555443332 334 236777777777766543
Done!