RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12488
         (91 letters)



>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 99

 Score = 74.5 bits (183), Expect = 7e-20
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 14 FPGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPV-VNVGDKVLLPKFGGTKIEVEG 72
             G++IP+ A+++     VVAVGPG    +GE   P+ V  GD V+  K+GGT+I+  G
Sbjct: 23 TASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNG 82

Query: 73 QELHLFKEADLLAVIEK 89
          +E  +    D+LAV+ K
Sbjct: 83 EEYLILSARDVLAVVSK 99


>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli
          [TaxId: 562]}
          Length = 97

 Score = 72.9 bits (179), Expect = 3e-19
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 14 FPGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKF-GGTKIEVEG 72
            GG+++   A  +     V+AVG G    NGE     V VGD V+     G    +++ 
Sbjct: 21 SAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDN 80

Query: 73 QELHLFKEADLLAVIE 88
          +E+ +  E+D+LA++E
Sbjct: 81 EEVLIMSESDILAIVE 96


>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus
          [TaxId: 274]}
          Length = 96

 Score = 71.5 bits (175), Expect = 1e-18
 Identities = 29/73 (39%), Positives = 48/73 (65%)

Query: 16 GGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQEL 75
          GG+++P+ A+++     V+AVG G    NG+ +   V  GD V+  K+GGT+IE++G+E 
Sbjct: 24 GGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEY 83

Query: 76 HLFKEADLLAVIE 88
           +  E DLLAV++
Sbjct: 84 VILSERDLLAVLQ 96


>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
          beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
          [TaxId: 1902]}
          Length = 208

 Score = 26.6 bits (57), Expect = 0.47
 Identities = 6/15 (40%), Positives = 9/15 (60%), Gaps = 1/15 (6%)

Query: 31 AVVVAVGPGARTPNG 45
          +V++  G G   PNG
Sbjct: 1  SVLI-TGVGVVAPNG 14


>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 163

 Score = 24.3 bits (52), Expect = 2.1
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 7/34 (20%)

Query: 28  VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 61
           V NA VV    G  T N       V + D VL+P
Sbjct: 135 VGNADVVC--GGVSTANA-----TVYMIDSVLMP 161


>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
           {Methylobacillus flagellatus [TaxId: 405]}
          Length = 395

 Score = 23.0 bits (49), Expect = 6.9
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 44  NGEYIKPVVNVGDKVLLPKFGGTKIEVEGQELHLFKEA 81
           +       V   D ++       K+++EG EL   K A
Sbjct: 303 HEPADLIDVRPIDDIIDDAPTFIKMDIEGSELSALKGA 340


>d1e6ya2 d.58.31.2 (A:1002-1283) Alpha chain {Archaeon
           Methanosarcina barkeri [TaxId: 2208]}
          Length = 282

 Score = 23.0 bits (49), Expect = 7.0
 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 52  VNVGDKVLLP-KFGGTKIEVEGQELHLFKEA 81
             +G + + P    GT I  E  +LH    A
Sbjct: 75  APLGQRAITPYTISGTDIVCEPDDLHYVNNA 105


>d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 268

 Score = 22.9 bits (49), Expect = 7.4
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 52 VNVGDKVLLP-KFGGTKIEVEGQELHLFKEA 81
            +G +VL+P +   T   VEG +LH    A
Sbjct: 61 TPLGQRVLMPYQVSTTDTYVEGDDLHFVNNA 91


>d1e6va2 d.58.31.2 (A:8-272) Alpha chain {Archaeon Methanopyrus
          kandleri [TaxId: 2320]}
          Length = 265

 Score = 22.9 bits (49), Expect = 7.8
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 52 VNVGDKVLLP-KFGGTKIEVEGQELHLFKEA 81
          V +G + L+  +  GT + VEG +L     A
Sbjct: 58 VPLGQRKLMSYQVSGTDVFVEGDDLTFVNNA 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.139    0.392 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 326,753
Number of extensions: 13454
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 12
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)