BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12489
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QJ4|A Chain A, Crystal Structure Of Human Renalase (Isoform 1)
pdb|3QJ4|B Chain B, Crystal Structure Of Human Renalase (Isoform 1)
Length = 342
Score = 204 bits (518), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 187/341 (54%), Gaps = 14/341 (4%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
M +VLIVG+G+T +L + LLR++ + +++ +WDKA GGRMTT+ S P C DLG
Sbjct: 1 MAQVLIVGAGMTGSLCAALLRRQT-SGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLG 59
Query: 61 LQYITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYF 120
QYIT TP + H Y LL +L P ++ I G ++ + ++V PQG SSI+K++
Sbjct: 60 AQYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMVMKEGDC-NFVAPQGISSIIKHY 118
Query: 121 LNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEM 180
L +S + + + + D + EV+ + G FD++VL+MP P++ L + ++
Sbjct: 119 LKESGAEVYFRHRVTQINLRDD---KWEVSKQTGSPEQFDLIVLTMPVPEILQL--QGDI 173
Query: 181 MHIALTGAAQVLLDVEYSSRYAFGMFFDK--QFERPFDIKYFDDNEIIRYISFDNVKRNR 238
+ Q L V YSSRYA G+F++ + + P+ +Y N IR++S DN KRN
Sbjct: 174 TTLISECQRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNI 233
Query: 239 PDEPI--SVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPLPAETKLQTWKYS 296
I S+ +HTT + ++L+ ++ + + + P P P TK Q W++S
Sbjct: 234 ESSEIGPSLVIHTTVPFGVTYLEHSIED--VQELVFQQLENILPGLPQPIATKCQKWRHS 291
Query: 297 QVVDPHRDKLGFMQFSAKPLVICIGDSYVPQSNFDGCIHSA 337
QV + + G M KP + C GD + QSNFDGCI SA
Sbjct: 292 QVTNAAANCPGQMTLHHKPFLACGGDGFT-QSNFDGCITSA 331
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
Length = 336
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 118/308 (38%), Gaps = 36/308 (11%)
Query: 4 VLIVGSGITSALTSYLLRQKLLTDLIH-ITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQ 62
+ I+G+GI L + LT H + ++DK+RG GGR ++ RS+ +D G Q
Sbjct: 5 IAIIGTGIAG-----LSAAQALTAAGHQVHLFDKSRGSGGRXSSKRSDA---GALDXGAQ 56
Query: 63 YITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYK--SRKKNVTHYVTPQGSSSIVKYF 120
Y T + +Q P N + +V G S+I +
Sbjct: 57 YFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPSPDEQVRWVGKPGXSAITRAX 116
Query: 121 LNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEM 180
+ C T E + N ++ + G F V+++ PAPQ + L +
Sbjct: 117 RGDXPVSFSCRIT--EVFRGEEHWNLLDAEGQ--NHGPFSHVIIATPAPQASTLLAAAPK 172
Query: 181 MHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEIIRYISFDNVKRNRPD 240
+ A V+ V+ +A + F+ + P + D+ + +++ + K R D
Sbjct: 173 L-------ASVVAGVKXDPTWAVALAFETPLQTPXQGCFVQDSP-LDWLARNRSKPERDD 224
Query: 241 EPISVCVHTTTQYYNSFLDSETPRNVIER------ELLDLIRKMFPSWPLPAETKLQTWK 294
+ +H T+Q+ LD+ VIE EL+D P P + W
Sbjct: 225 TLDTWILHATSQWSRQNLDASR-EQVIEHLHGAFAELIDCTX------PAPVFSLAHRWL 277
Query: 295 YSQVVDPH 302
Y++ H
Sbjct: 278 YARPAGAH 285
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITI 33
KKV ++G+G T A T++LL QK L D++ + I
Sbjct: 9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDI 40
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Plasmodium Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Plasmodium Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Plasmodium Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Plasmodium Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVP--NCKV 57
K+++VGSG+ + + L+ QK L D++ + K G + TS SNV+ NCKV
Sbjct: 5 KIVLVGSGMIGGVMATLIVQKNLGDVVMFDVV-KNMPQGKALDTSHSNVMAYSNCKV 60
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVP--NCKV 57
K+++VGSG+ + + L+ QK L D++ I K G + TS +NV+ NCKV
Sbjct: 6 KIVLVGSGMIGGVMATLIVQKNLGDVVMFDIV-KNMPHGKALDTSHTNVMAYSNCKV 61
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed
With 2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed
With 2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed
With 3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed
With 3,7- Dihydroxynaphthalene-2-Carboxylic Acid And
Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVP--NCKV 57
K+++VGSG+ + + L+ QK L D++ I K G + TS +NV+ NCKV
Sbjct: 5 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV-KNMPHGKALDTSHTNVMAYSNCKV 60
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed
With 2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVP--NCKV 57
K+++VGSG+ + + L+ QK L D++ I K G + TS +NV+ NCKV
Sbjct: 5 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV-KNMPHGKALDTSHTNVMAYSNCKV 60
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed
With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic
Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed
With Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed
With Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic
Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed
With Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed
With Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo
Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVP--NCKV 57
K+++VGSG+ + + L+ QK L D++ I K G + TS +NV+ NCKV
Sbjct: 6 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV-KNMPHGKALDTSHTNVMAYSNCKV 61
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVP--NCKV 57
K+++VGSG+ + + L+ QK L D++ I K G + TS +NV+ NCKV
Sbjct: 6 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV-KNMPHGKALDTSHTNVMAYSNCKV 61
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVP--NCKV 57
K+++VGSG+ + + L+ QK L D++ I K G + TS +NV+ NCKV
Sbjct: 6 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV-KNMPHGKALDTSHTNVMAYSNCKV 61
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVP--NCKV 57
K+++VGSG+ + + L+ QK L D++ I K G + TS +NV+ NCKV
Sbjct: 6 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV-KNMPHGKALDTSHTNVMAYSNCKV 61
>pdb|3TGQ|A Chain A, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
pdb|3TGQ|B Chain B, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
pdb|3TGQ|C Chain C, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
pdb|3TGQ|D Chain D, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
Length = 352
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 280 PSWPLPAETKLQT-------WKYSQVVDPHRDKLGFMQFSAKPLVICIGDSYVPQS 328
P+ P P E KL+ WK + V H D + S KP V G S + Q+
Sbjct: 33 PTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTGGSVITQA 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,072,373
Number of Sequences: 62578
Number of extensions: 468627
Number of successful extensions: 977
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 12
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)