Query psy12489
Match_columns 365
No_of_seqs 180 out of 2417
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 20:37:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 100.0 1.4E-52 2.9E-57 351.5 19.5 322 1-347 1-330 (331)
2 TIGR00562 proto_IX_ox protopor 100.0 7.5E-34 1.6E-38 273.8 29.2 327 1-346 2-458 (462)
3 PLN02268 probable polyamine ox 100.0 3.8E-33 8.2E-38 266.7 29.8 320 2-346 1-432 (435)
4 PRK12416 protoporphyrinogen ox 100.0 4.2E-32 9.1E-37 261.4 29.0 325 1-346 1-459 (463)
5 PLN02576 protoporphyrinogen ox 100.0 1.3E-31 2.7E-36 260.4 29.0 230 107-347 232-486 (496)
6 PRK11883 protoporphyrinogen ox 100.0 2.1E-31 4.5E-36 256.2 29.9 322 2-346 1-450 (451)
7 COG1231 Monoamine oxidase [Ami 100.0 2E-31 4.2E-36 241.7 26.5 320 2-346 8-445 (450)
8 PLN02529 lysine-specific histo 100.0 3.9E-31 8.5E-36 260.3 30.3 328 2-346 161-596 (738)
9 PLN02676 polyamine oxidase 100.0 1.3E-30 2.9E-35 250.1 30.0 328 2-347 27-472 (487)
10 PLN02328 lysine-specific histo 100.0 2E-30 4.4E-35 256.2 28.7 328 2-346 239-677 (808)
11 PLN02568 polyamine oxidase 100.0 7.6E-30 1.7E-34 246.6 31.4 237 106-347 234-534 (539)
12 PLN03000 amine oxidase 100.0 6.3E-30 1.4E-34 252.5 30.5 328 2-346 185-621 (881)
13 COG1232 HemY Protoporphyrinoge 100.0 4.9E-30 1.1E-34 238.2 26.5 321 2-345 1-443 (444)
14 KOG0029|consensus 100.0 3.2E-29 6.8E-34 238.2 25.6 323 2-346 16-457 (501)
15 PLN02976 amine oxidase 100.0 1.1E-28 2.5E-33 249.7 29.0 232 105-346 927-1184(1713)
16 PRK07233 hypothetical protein; 100.0 2.7E-28 5.8E-33 233.4 28.6 321 3-347 1-430 (434)
17 PF01593 Amino_oxidase: Flavin 100.0 1.2E-27 2.5E-32 228.5 25.8 226 110-345 208-450 (450)
18 KOG0685|consensus 100.0 8.7E-28 1.9E-32 217.8 23.2 323 3-346 23-489 (498)
19 PRK07208 hypothetical protein; 100.0 3.4E-26 7.4E-31 221.4 26.9 326 2-348 5-461 (479)
20 PLN02612 phytoene desaturase 100.0 1.1E-25 2.4E-30 220.0 30.0 220 114-348 308-548 (567)
21 TIGR02731 phytoene_desat phyto 99.9 1.1E-24 2.3E-29 209.4 29.5 218 114-344 213-452 (453)
22 TIGR02732 zeta_caro_desat caro 99.9 2.2E-24 4.7E-29 207.1 25.6 219 115-345 224-474 (474)
23 TIGR03467 HpnE squalene-associ 99.9 7.6E-24 1.7E-28 201.7 28.0 220 106-345 188-418 (419)
24 PLN02487 zeta-carotene desatur 99.9 6.9E-23 1.5E-27 198.3 27.8 239 107-357 287-561 (569)
25 TIGR02733 desat_CrtD C-3',4' d 99.9 1.4E-22 3E-27 196.7 29.4 231 106-347 224-491 (492)
26 KOG1276|consensus 99.9 1.5E-22 3.3E-27 181.1 23.6 329 2-345 12-490 (491)
27 TIGR02734 crtI_fam phytoene de 99.9 1.2E-21 2.6E-26 190.7 26.5 232 105-346 210-490 (502)
28 TIGR02730 carot_isom carotene 99.9 2.9E-20 6.2E-25 180.3 30.4 233 106-347 221-491 (493)
29 COG2907 Predicted NAD/FAD-bind 99.8 1.7E-20 3.6E-25 163.7 13.1 190 1-208 8-305 (447)
30 COG1233 Phytoene dehydrogenase 99.8 1E-17 2.2E-22 161.4 21.7 59 1-66 3-61 (487)
31 COG3349 Uncharacterized conser 99.6 9E-15 2E-19 136.1 14.5 63 2-70 1-64 (485)
32 COG0654 UbiH 2-polyprenyl-6-me 99.6 8.5E-13 1.8E-17 124.3 25.5 303 1-363 2-333 (387)
33 TIGR01988 Ubi-OHases Ubiquinon 99.6 5.6E-13 1.2E-17 125.6 23.7 147 3-168 1-161 (385)
34 COG2081 Predicted flavoprotein 99.6 1.2E-14 2.6E-19 130.8 11.1 155 2-168 4-165 (408)
35 PRK08849 2-octaprenyl-3-methyl 99.6 1.1E-12 2.3E-17 123.6 25.1 49 118-169 118-166 (384)
36 PRK05868 hypothetical protein; 99.6 9E-13 2E-17 123.4 23.4 141 1-168 1-158 (372)
37 PRK08773 2-octaprenyl-3-methyl 99.6 8.3E-13 1.8E-17 124.7 23.4 147 2-168 7-167 (392)
38 PRK07333 2-octaprenyl-6-methox 99.6 9.6E-13 2.1E-17 124.8 23.7 43 123-168 123-165 (403)
39 PF01266 DAO: FAD dependent ox 99.6 9.1E-13 2E-17 122.5 22.8 59 114-177 147-209 (358)
40 TIGR01984 UbiH 2-polyprenyl-6- 99.5 1.6E-12 3.5E-17 122.4 23.4 42 125-169 120-161 (382)
41 TIGR02032 GG-red-SF geranylger 99.5 5.9E-12 1.3E-16 114.0 26.0 146 2-169 1-147 (295)
42 PRK06847 hypothetical protein; 99.5 5.9E-13 1.3E-17 125.0 20.0 144 1-168 4-161 (375)
43 TIGR01377 soxA_mon sarcosine o 99.5 2.1E-11 4.6E-16 114.7 29.8 44 121-168 155-198 (380)
44 PRK07364 2-octaprenyl-6-methox 99.5 2.1E-12 4.5E-17 123.0 23.0 35 2-40 19-53 (415)
45 PRK12409 D-amino acid dehydrog 99.5 8E-12 1.7E-16 118.8 26.3 38 1-42 1-38 (410)
46 PRK07236 hypothetical protein; 99.5 4.7E-12 1E-16 119.3 24.4 139 2-168 7-152 (386)
47 PRK07494 2-octaprenyl-6-methox 99.5 1.6E-12 3.4E-17 122.7 21.2 200 127-362 126-334 (388)
48 PRK09126 hypothetical protein; 99.5 1.7E-12 3.7E-17 122.6 20.9 50 116-168 116-165 (392)
49 PRK08013 oxidoreductase; Provi 99.5 6.9E-12 1.5E-16 118.7 25.0 150 2-169 4-167 (400)
50 PRK06617 2-octaprenyl-6-methox 99.5 4.2E-12 9.1E-17 119.1 23.2 147 1-169 1-159 (374)
51 PRK05714 2-octaprenyl-3-methyl 99.5 3.9E-12 8.5E-17 120.7 22.2 43 124-169 125-167 (405)
52 PRK11259 solA N-methyltryptoph 99.5 3.9E-11 8.4E-16 112.7 28.6 191 123-350 161-363 (376)
53 PRK08850 2-octaprenyl-6-methox 99.5 5.8E-12 1.3E-16 119.5 22.7 50 116-168 117-166 (405)
54 COG0644 FixC Dehydrogenases (f 99.5 6.5E-12 1.4E-16 118.6 22.8 147 1-169 3-151 (396)
55 PRK07045 putative monooxygenas 99.5 6.6E-12 1.4E-16 118.4 22.7 43 124-169 120-164 (388)
56 PRK06753 hypothetical protein; 99.5 7.3E-12 1.6E-16 117.5 22.7 140 2-168 1-150 (373)
57 PRK06184 hypothetical protein; 99.5 1.5E-11 3.2E-16 119.9 25.5 142 2-169 4-167 (502)
58 KOG4254|consensus 99.5 6.3E-12 1.4E-16 114.0 20.4 236 104-350 254-548 (561)
59 PRK08020 ubiF 2-octaprenyl-3-m 99.5 1.1E-11 2.5E-16 117.0 23.3 42 125-169 127-168 (391)
60 PRK07608 ubiquinone biosynthes 99.5 1.5E-11 3.2E-16 116.1 24.1 147 2-168 6-165 (388)
61 PRK08244 hypothetical protein; 99.5 1.3E-11 2.8E-16 120.1 24.2 141 2-168 3-157 (493)
62 PRK05732 2-octaprenyl-6-methox 99.5 1.6E-11 3.5E-16 116.1 24.1 50 117-169 119-168 (395)
63 PF13450 NAD_binding_8: NAD(P) 99.5 1.6E-13 3.5E-18 94.9 7.5 54 6-66 1-54 (68)
64 PRK10157 putative oxidoreducta 99.5 4E-12 8.6E-17 121.1 19.6 149 2-168 6-162 (428)
65 PF03486 HI0933_like: HI0933-l 99.5 6.4E-13 1.4E-17 124.4 12.8 152 2-168 1-164 (409)
66 PRK07588 hypothetical protein; 99.5 3E-12 6.5E-17 120.9 17.5 40 127-168 117-156 (391)
67 PRK06996 hypothetical protein; 99.5 2.5E-11 5.5E-16 114.8 23.7 42 123-167 127-171 (398)
68 PRK07190 hypothetical protein; 99.5 4.2E-11 9.2E-16 115.6 25.1 142 2-169 6-164 (487)
69 PLN02172 flavin-containing mon 99.4 8.1E-13 1.8E-17 126.2 12.9 149 2-168 11-171 (461)
70 TIGR00031 UDP-GALP_mutase UDP- 99.4 4.9E-11 1.1E-15 110.4 24.1 60 1-66 1-60 (377)
71 PRK06834 hypothetical protein; 99.4 3.1E-11 6.8E-16 116.6 23.8 140 2-168 4-154 (488)
72 PF01494 FAD_binding_3: FAD bi 99.4 2.2E-12 4.7E-17 119.9 14.8 35 2-40 2-36 (356)
73 PRK00711 D-amino acid dehydrog 99.4 5.7E-11 1.2E-15 113.2 24.8 41 3-47 2-42 (416)
74 PF13738 Pyr_redox_3: Pyridine 99.4 6.8E-13 1.5E-17 113.5 9.9 134 5-168 1-136 (203)
75 PRK10015 oxidoreductase; Provi 99.4 2E-11 4.4E-16 116.2 20.9 148 2-168 6-162 (429)
76 PRK06126 hypothetical protein; 99.4 8.6E-11 1.9E-15 115.7 26.0 34 2-39 8-41 (545)
77 PRK07538 hypothetical protein; 99.4 3.1E-11 6.8E-16 114.8 22.0 48 314-362 296-348 (413)
78 TIGR01373 soxB sarcosine oxida 99.4 4.8E-10 1E-14 106.5 30.0 193 123-350 195-388 (407)
79 PRK08163 salicylate hydroxylas 99.4 1.1E-11 2.3E-16 117.4 17.7 41 127-169 125-165 (396)
80 TIGR03219 salicylate_mono sali 99.4 5.7E-12 1.2E-16 119.9 15.7 54 114-169 105-158 (414)
81 PRK06183 mhpA 3-(3-hydroxyphen 99.4 6.8E-11 1.5E-15 116.2 22.6 143 2-169 11-173 (538)
82 PRK11728 hydroxyglutarate oxid 99.4 2E-10 4.4E-15 108.5 25.0 42 1-46 2-45 (393)
83 PRK08132 FAD-dependent oxidore 99.4 2.2E-10 4.7E-15 112.9 25.5 35 2-40 24-58 (547)
84 COG0579 Predicted dehydrogenas 99.4 3.4E-11 7.5E-16 111.9 18.3 156 1-168 3-209 (429)
85 PRK11445 putative oxidoreducta 99.4 4.8E-10 1E-14 104.3 24.8 142 1-168 1-155 (351)
86 PRK06185 hypothetical protein; 99.4 4.4E-10 9.6E-15 106.7 25.0 34 2-39 7-40 (407)
87 TIGR01989 COQ6 Ubiquinone bios 99.4 2.2E-10 4.8E-15 109.7 22.6 43 127-169 135-182 (437)
88 PRK08243 4-hydroxybenzoate 3-m 99.3 6E-10 1.3E-14 105.2 24.7 34 2-39 3-36 (392)
89 COG2072 TrkA Predicted flavopr 99.3 1.5E-11 3.3E-16 117.1 13.6 130 2-168 9-142 (443)
90 TIGR03329 Phn_aa_oxid putative 99.3 3.7E-10 8.1E-15 108.8 23.2 41 123-168 195-235 (460)
91 PRK01747 mnmC bifunctional tRN 99.3 1.7E-10 3.7E-15 116.0 21.6 52 115-169 409-462 (662)
92 TIGR02023 BchP-ChlP geranylger 99.3 3.2E-10 7E-15 106.9 22.1 32 2-37 1-32 (388)
93 TIGR01790 carotene-cycl lycope 99.3 5.2E-10 1.1E-14 105.6 22.8 132 3-169 1-140 (388)
94 PLN02927 antheraxanthin epoxid 99.3 5.3E-10 1.1E-14 110.1 22.8 53 114-168 194-246 (668)
95 PRK06475 salicylate hydroxylas 99.3 4.5E-10 9.7E-15 106.4 20.8 35 2-40 3-37 (400)
96 PF00743 FMO-like: Flavin-bind 99.3 1.6E-11 3.5E-16 119.0 11.0 140 2-168 2-148 (531)
97 TIGR02360 pbenz_hydroxyl 4-hyd 99.3 8.3E-10 1.8E-14 104.1 20.5 34 2-39 3-36 (390)
98 KOG2820|consensus 99.3 3E-09 6.6E-14 93.6 22.2 59 117-177 159-218 (399)
99 PLN00093 geranylgeranyl diphos 99.2 4.1E-09 9E-14 100.7 24.6 33 2-38 40-72 (450)
100 PTZ00363 rab-GDP dissociation 99.2 2.6E-09 5.6E-14 101.4 20.8 59 107-166 225-286 (443)
101 PRK08294 phenol 2-monooxygenas 99.2 6.3E-09 1.4E-13 103.6 24.3 34 2-39 33-67 (634)
102 COG0665 DadA Glycine/D-amino a 99.2 4.6E-09 1E-13 99.0 22.1 205 115-350 157-370 (387)
103 TIGR02028 ChlP geranylgeranyl 99.2 5.3E-09 1.1E-13 98.9 21.9 35 2-40 1-35 (398)
104 TIGR03364 HpnW_proposed FAD de 99.2 1.9E-08 4.1E-13 94.1 25.1 34 2-39 1-34 (365)
105 KOG1399|consensus 99.2 2.5E-10 5.5E-15 107.5 11.2 141 2-169 7-152 (448)
106 PRK09897 hypothetical protein; 99.2 4.5E-10 9.7E-15 108.6 13.1 154 1-168 1-164 (534)
107 PTZ00367 squalene epoxidase; P 99.1 2E-08 4.4E-13 98.2 24.4 33 2-38 34-66 (567)
108 PLN02985 squalene monooxygenas 99.1 1E-08 2.2E-13 99.6 22.1 49 315-363 326-384 (514)
109 KOG2614|consensus 99.1 1.9E-08 4.1E-13 91.4 20.2 36 1-40 2-37 (420)
110 TIGR01292 TRX_reduct thioredox 99.1 9.9E-10 2.1E-14 99.8 12.2 110 2-168 1-110 (300)
111 PF13454 NAD_binding_9: FAD-NA 99.1 9.5E-10 2.1E-14 89.8 10.6 146 5-168 1-155 (156)
112 PTZ00383 malate:quinone oxidor 99.1 5E-09 1.1E-13 100.8 17.0 38 2-41 46-83 (497)
113 PRK12266 glpD glycerol-3-phosp 99.1 4E-08 8.6E-13 95.7 23.4 37 2-42 7-43 (508)
114 TIGR00275 flavoprotein, HI0933 99.1 5.1E-10 1.1E-14 105.7 9.7 148 5-168 1-158 (400)
115 PRK13369 glycerol-3-phosphate 99.1 5.4E-08 1.2E-12 94.8 23.9 36 2-41 7-42 (502)
116 PF05834 Lycopene_cycl: Lycope 99.1 5.2E-08 1.1E-12 91.3 22.8 133 3-168 1-140 (374)
117 PRK04176 ribulose-1,5-biphosph 99.1 1.5E-09 3.3E-14 95.9 11.6 39 2-44 26-64 (257)
118 TIGR00292 thiazole biosynthesi 99.1 3.8E-09 8.3E-14 93.0 13.8 39 2-44 22-60 (254)
119 PRK13339 malate:quinone oxidor 99.0 7.9E-09 1.7E-13 99.2 16.5 40 2-43 7-46 (497)
120 TIGR01320 mal_quin_oxido malat 99.0 4.8E-09 1E-13 101.1 15.0 40 2-43 1-40 (483)
121 PRK05257 malate:quinone oxidor 99.0 4.9E-09 1.1E-13 101.2 14.5 41 2-44 6-46 (494)
122 PRK11101 glpA sn-glycerol-3-ph 99.0 4.9E-08 1.1E-12 95.9 20.8 34 2-39 7-40 (546)
123 PLN02697 lycopene epsilon cycl 99.0 2.4E-07 5.3E-12 89.8 23.3 33 2-38 109-141 (529)
124 PF12831 FAD_oxidored: FAD dep 99.0 5.5E-10 1.2E-14 106.4 5.0 150 3-174 1-154 (428)
125 PRK08255 salicylyl-CoA 5-hydro 99.0 3.4E-08 7.4E-13 100.7 17.9 46 317-362 271-321 (765)
126 PRK15317 alkyl hydroperoxide r 98.9 1.4E-08 3E-13 99.3 12.0 109 2-168 212-320 (517)
127 PLN02463 lycopene beta cyclase 98.9 2E-08 4.3E-13 95.8 12.6 134 2-168 29-167 (447)
128 TIGR01789 lycopene_cycl lycope 98.9 1.6E-08 3.5E-13 94.5 10.7 131 3-168 1-136 (370)
129 COG0492 TrxB Thioredoxin reduc 98.9 2.2E-08 4.7E-13 90.3 11.1 105 2-168 4-113 (305)
130 TIGR03140 AhpF alkyl hydropero 98.9 2.2E-08 4.7E-13 97.9 11.8 109 1-168 212-321 (515)
131 PRK06481 fumarate reductase fl 98.8 2.2E-08 4.7E-13 97.6 11.0 38 2-43 62-99 (506)
132 PF06039 Mqo: Malate:quinone o 98.8 1E-07 2.2E-12 88.3 14.7 40 2-43 4-43 (488)
133 PLN02661 Putative thiazole syn 98.8 4.6E-08 1E-12 88.9 12.0 132 2-168 93-242 (357)
134 COG1635 THI4 Ribulose 1,5-bisp 98.8 3.6E-09 7.7E-14 87.8 4.3 39 2-44 31-69 (262)
135 PRK08274 tricarballylate dehyd 98.8 2.4E-08 5.3E-13 96.5 10.5 38 2-43 5-44 (466)
136 COG4529 Uncharacterized protei 98.8 6.8E-08 1.5E-12 89.8 11.4 155 1-167 1-161 (474)
137 COG0578 GlpA Glycerol-3-phosph 98.8 2.4E-06 5.2E-11 81.7 22.0 38 2-43 13-50 (532)
138 PF01946 Thi4: Thi4 family; PD 98.8 1E-08 2.2E-13 85.6 5.0 132 2-169 18-164 (230)
139 TIGR03143 AhpF_homolog putativ 98.8 7.3E-08 1.6E-12 94.9 11.9 108 2-168 5-112 (555)
140 PRK08401 L-aspartate oxidase; 98.7 6.6E-08 1.4E-12 93.3 11.1 34 1-38 1-34 (466)
141 PRK13977 myosin-cross-reactive 98.7 1.8E-08 4E-13 96.9 7.0 61 2-63 23-83 (576)
142 COG0562 Glf UDP-galactopyranos 98.7 3E-08 6.5E-13 86.9 7.5 63 1-67 1-63 (374)
143 PLN02464 glycerol-3-phosphate 98.7 1.7E-06 3.6E-11 86.3 21.0 37 2-42 72-108 (627)
144 TIGR01813 flavo_cyto_c flavocy 98.7 4.3E-08 9.2E-13 94.1 8.8 38 3-43 1-38 (439)
145 PRK10262 thioredoxin reductase 98.7 1.4E-07 3E-12 86.7 11.6 109 2-168 7-115 (321)
146 PF00890 FAD_binding_2: FAD bi 98.7 1.6E-07 3.4E-12 89.6 11.9 36 3-42 1-36 (417)
147 PRK07121 hypothetical protein; 98.6 6.9E-08 1.5E-12 93.9 7.8 38 2-43 21-58 (492)
148 PRK05249 soluble pyridine nucl 98.6 3.3E-07 7.1E-12 88.6 12.3 39 2-44 6-44 (461)
149 PF00070 Pyr_redox: Pyridine n 98.6 5.3E-07 1.1E-11 64.6 10.0 80 3-154 1-80 (80)
150 PRK06175 L-aspartate oxidase; 98.6 4.6E-07 1E-11 86.5 12.1 37 2-43 5-41 (433)
151 PRK07804 L-aspartate oxidase; 98.6 1.1E-06 2.3E-11 86.5 14.5 37 2-42 17-53 (541)
152 PRK13512 coenzyme A disulfide 98.6 5.6E-07 1.2E-11 86.3 12.3 112 1-168 1-115 (438)
153 PRK05192 tRNA uridine 5-carbox 98.6 4.1E-07 8.8E-12 88.6 10.9 37 2-42 5-42 (618)
154 TIGR00551 nadB L-aspartate oxi 98.6 8.5E-07 1.8E-11 86.2 13.0 36 2-42 3-38 (488)
155 PF13434 K_oxygenase: L-lysine 98.6 9.9E-08 2.1E-12 87.8 6.2 145 2-167 3-156 (341)
156 TIGR01812 sdhA_frdA_Gneg succi 98.6 6E-07 1.3E-11 88.9 12.1 36 3-42 1-36 (566)
157 TIGR01424 gluta_reduc_2 glutat 98.6 4.4E-07 9.6E-12 87.2 10.9 37 2-43 3-39 (446)
158 PRK12842 putative succinate de 98.6 2.1E-07 4.5E-12 92.2 8.7 39 2-44 10-48 (574)
159 PRK06069 sdhA succinate dehydr 98.5 1.1E-06 2.4E-11 87.1 13.4 40 2-42 6-45 (577)
160 TIGR02485 CobZ_N-term precorri 98.5 3.2E-07 7E-12 87.8 9.0 30 6-39 1-30 (432)
161 PRK09231 fumarate reductase fl 98.5 1.1E-06 2.5E-11 86.9 12.9 39 2-42 5-43 (582)
162 PRK07573 sdhA succinate dehydr 98.5 1.7E-06 3.8E-11 86.4 14.2 36 2-41 36-71 (640)
163 PRK06854 adenylylsulfate reduc 98.5 6.2E-07 1.3E-11 89.1 10.9 35 2-40 12-48 (608)
164 PRK05945 sdhA succinate dehydr 98.5 1.2E-06 2.7E-11 86.7 12.9 39 2-42 4-42 (575)
165 PRK07057 sdhA succinate dehydr 98.5 2.5E-06 5.3E-11 84.7 14.8 37 2-42 13-49 (591)
166 PRK05976 dihydrolipoamide dehy 98.5 3.6E-07 7.8E-12 88.5 8.8 37 2-43 5-41 (472)
167 PRK12837 3-ketosteroid-delta-1 98.5 4.9E-07 1.1E-11 88.3 9.3 37 2-43 8-44 (513)
168 PRK06467 dihydrolipoamide dehy 98.5 9.1E-07 2E-11 85.6 11.1 38 2-43 5-42 (471)
169 PRK06115 dihydrolipoamide dehy 98.5 5.7E-07 1.2E-11 86.9 9.6 38 2-43 4-41 (466)
170 PRK06416 dihydrolipoamide dehy 98.5 1E-06 2.3E-11 85.1 11.4 38 2-44 5-42 (462)
171 PRK08010 pyridine nucleotide-d 98.5 1E-06 2.2E-11 84.7 11.1 38 2-43 4-42 (441)
172 PF01134 GIDA: Glucose inhibit 98.5 3.1E-07 6.6E-12 84.9 7.1 139 3-168 1-150 (392)
173 PRK07845 flavoprotein disulfid 98.5 5.5E-07 1.2E-11 87.0 9.1 38 1-43 1-38 (466)
174 PRK09564 coenzyme A disulfide 98.5 1E-06 2.3E-11 84.7 11.0 110 2-168 1-113 (444)
175 PRK06134 putative FAD-binding 98.5 7.8E-07 1.7E-11 88.1 10.1 39 2-44 13-51 (581)
176 PRK07803 sdhA succinate dehydr 98.5 4.7E-06 1E-10 83.3 15.3 37 2-42 9-45 (626)
177 TIGR01176 fum_red_Fp fumarate 98.4 4.1E-06 8.9E-11 82.8 14.6 40 2-43 4-43 (580)
178 PRK06263 sdhA succinate dehydr 98.4 3.5E-06 7.5E-11 83.0 13.9 33 2-39 8-40 (543)
179 KOG2415|consensus 98.4 2.6E-06 5.6E-11 77.4 11.4 47 2-48 77-125 (621)
180 PRK06452 sdhA succinate dehydr 98.4 4.1E-06 8.8E-11 82.8 13.9 37 2-42 6-42 (566)
181 TIGR03197 MnmC_Cterm tRNA U-34 98.4 3.8E-05 8.3E-10 72.3 19.8 53 114-169 135-189 (381)
182 PRK09078 sdhA succinate dehydr 98.4 3.5E-06 7.5E-11 83.8 13.2 37 2-42 13-49 (598)
183 PRK08071 L-aspartate oxidase; 98.4 4.6E-06 1E-10 81.4 13.8 37 2-43 4-40 (510)
184 PRK08275 putative oxidoreducta 98.4 1.6E-06 3.5E-11 85.5 10.2 37 2-40 10-46 (554)
185 PRK06327 dihydrolipoamide dehy 98.4 1.3E-06 2.7E-11 84.7 9.2 31 2-36 5-35 (475)
186 PTZ00139 Succinate dehydrogena 98.4 2.6E-06 5.7E-11 84.8 11.5 37 2-42 30-66 (617)
187 TIGR01811 sdhA_Bsu succinate d 98.4 5.2E-06 1.1E-10 82.5 13.3 34 4-41 1-34 (603)
188 PRK08958 sdhA succinate dehydr 98.4 5.7E-06 1.2E-10 82.0 13.5 37 2-42 8-44 (588)
189 PRK07395 L-aspartate oxidase; 98.4 3.7E-06 8E-11 82.7 11.9 37 2-43 10-46 (553)
190 PLN02507 glutathione reductase 98.4 1.4E-06 2.9E-11 84.8 8.8 31 2-36 26-56 (499)
191 PLN00128 Succinate dehydrogena 98.4 8.2E-06 1.8E-10 81.4 14.5 37 2-42 51-87 (635)
192 PRK12839 hypothetical protein; 98.4 1.5E-06 3.3E-11 85.7 9.2 40 2-45 9-48 (572)
193 PRK09754 phenylpropionate diox 98.4 1.9E-06 4.1E-11 81.6 9.5 107 2-168 4-110 (396)
194 PRK08626 fumarate reductase fl 98.4 8.3E-06 1.8E-10 81.7 14.4 37 2-42 6-42 (657)
195 PTZ00306 NADH-dependent fumara 98.3 7E-06 1.5E-10 87.5 14.3 38 2-43 410-447 (1167)
196 PRK07512 L-aspartate oxidase; 98.3 3.9E-06 8.6E-11 81.9 11.2 32 2-39 10-41 (513)
197 PRK04965 NADH:flavorubredoxin 98.3 4E-06 8.6E-11 78.8 10.2 107 2-168 3-109 (377)
198 PF04820 Trp_halogenase: Trypt 98.3 1.2E-05 2.5E-10 77.3 13.2 57 109-169 152-210 (454)
199 PRK12779 putative bifunctional 98.3 7.3E-07 1.6E-11 92.4 5.2 41 2-46 307-347 (944)
200 PTZ00058 glutathione reductase 98.3 3.5E-06 7.5E-11 82.7 9.4 37 2-43 49-85 (561)
201 PRK04965 NADH:flavorubredoxin 98.3 8.9E-06 1.9E-10 76.5 11.8 95 2-168 142-237 (377)
202 COG1148 HdrA Heterodisulfide r 98.3 1E-06 2.2E-11 81.4 4.9 42 2-47 125-166 (622)
203 TIGR03315 Se_ygfK putative sel 98.3 1E-06 2.2E-11 90.8 5.3 40 2-45 538-577 (1012)
204 PRK09754 phenylpropionate diox 98.3 1.1E-05 2.3E-10 76.4 11.9 95 2-168 145-239 (396)
205 PLN02815 L-aspartate oxidase 98.2 1.5E-05 3.2E-10 78.9 12.4 36 2-42 30-65 (594)
206 PRK08205 sdhA succinate dehydr 98.2 2.4E-05 5.2E-10 77.7 13.8 36 2-42 6-41 (583)
207 PRK12843 putative FAD-binding 98.2 4.9E-06 1.1E-10 82.5 8.8 40 2-45 17-56 (578)
208 KOG2404|consensus 98.2 6.5E-06 1.4E-10 72.5 8.1 39 2-44 10-48 (477)
209 PRK12831 putative oxidoreducta 98.2 1.9E-06 4.1E-11 83.1 5.1 39 2-44 141-179 (464)
210 TIGR01350 lipoamide_DH dihydro 98.2 2E-06 4.4E-11 83.1 5.3 39 1-44 1-39 (461)
211 PRK05335 tRNA (uracil-5-)-meth 98.2 2.1E-06 4.6E-11 80.1 4.9 36 1-40 2-37 (436)
212 PRK09853 putative selenate red 98.2 2.2E-06 4.7E-11 88.1 5.4 40 2-45 540-579 (1019)
213 TIGR00136 gidA glucose-inhibit 98.2 3.6E-05 7.9E-10 75.1 13.3 37 2-42 1-37 (617)
214 PLN02852 ferredoxin-NADP+ redu 98.1 2.7E-06 5.9E-11 81.7 5.4 41 2-46 27-69 (491)
215 TIGR02352 thiamin_ThiO glycine 98.1 0.0014 3E-08 60.4 22.6 181 123-347 149-336 (337)
216 PRK06416 dihydrolipoamide dehy 98.1 3.1E-05 6.6E-10 74.9 11.6 95 2-168 173-270 (462)
217 PRK12769 putative oxidoreducta 98.1 3.8E-06 8.3E-11 84.6 5.4 40 2-45 328-367 (654)
218 PRK12775 putative trifunctiona 98.1 3.5E-06 7.5E-11 88.1 5.0 41 2-46 431-471 (1006)
219 TIGR01350 lipoamide_DH dihydro 98.1 3.7E-05 8E-10 74.4 11.8 95 2-168 171-267 (461)
220 KOG2844|consensus 98.1 1.7E-05 3.7E-10 76.2 9.0 53 115-170 188-243 (856)
221 PRK14989 nitrite reductase sub 98.1 1.7E-05 3.6E-10 81.6 9.5 108 2-168 4-111 (847)
222 PRK07251 pyridine nucleotide-d 98.1 4.1E-05 8.9E-10 73.5 11.7 94 2-168 158-251 (438)
223 COG0029 NadB Aspartate oxidase 98.1 2.1E-05 4.5E-10 73.5 9.0 33 3-40 9-41 (518)
224 PRK05249 soluble pyridine nucl 98.0 5.1E-05 1.1E-09 73.4 12.1 95 2-168 176-270 (461)
225 PRK07846 mycothione reductase; 98.0 5E-05 1.1E-09 73.1 11.6 94 2-168 167-260 (451)
226 PTZ00188 adrenodoxin reductase 98.0 6.9E-06 1.5E-10 78.0 5.5 42 2-47 40-82 (506)
227 TIGR01316 gltA glutamate synth 98.0 6E-06 1.3E-10 79.4 5.1 39 2-44 134-172 (449)
228 PRK06116 glutathione reductase 98.0 5.3E-06 1.2E-10 79.9 4.7 37 2-43 5-41 (450)
229 PRK07251 pyridine nucleotide-d 98.0 6.2E-06 1.4E-10 79.1 5.0 38 2-43 4-42 (438)
230 PRK06292 dihydrolipoamide dehy 98.0 6.3E-06 1.4E-10 79.6 5.1 37 2-43 4-40 (460)
231 PF07156 Prenylcys_lyase: Pren 98.0 0.00014 3.1E-09 67.3 13.7 66 103-171 117-188 (368)
232 PRK12778 putative bifunctional 98.0 6.8E-06 1.5E-10 84.1 5.4 39 2-44 432-470 (752)
233 TIGR02374 nitri_red_nirB nitri 98.0 1.8E-05 3.8E-10 81.2 8.0 106 4-168 1-106 (785)
234 PTZ00318 NADH dehydrogenase-li 98.0 5.3E-05 1.1E-09 72.4 10.8 34 1-38 10-43 (424)
235 TIGR03169 Nterm_to_SelD pyridi 98.0 3.2E-05 6.9E-10 72.4 9.1 104 3-168 1-105 (364)
236 PRK07845 flavoprotein disulfid 98.0 7.7E-05 1.7E-09 72.2 11.9 95 2-168 178-272 (466)
237 TIGR01421 gluta_reduc_1 glutat 98.0 7.2E-06 1.6E-10 78.9 4.7 38 2-44 3-40 (450)
238 PRK06370 mercuric reductase; V 98.0 8.9E-06 1.9E-10 78.7 5.2 37 2-43 6-42 (463)
239 PRK12810 gltD glutamate syntha 98.0 9.1E-06 2E-10 78.7 5.1 39 2-44 144-182 (471)
240 COG0493 GltD NADPH-dependent g 98.0 7.8E-06 1.7E-10 77.8 4.4 42 2-47 124-165 (457)
241 PLN02507 glutathione reductase 98.0 9.5E-05 2.1E-09 72.0 12.0 95 2-168 204-298 (499)
242 PRK08641 sdhA succinate dehydr 97.9 8.9E-06 1.9E-10 80.7 5.0 37 2-42 4-40 (589)
243 COG1249 Lpd Pyruvate/2-oxoglut 97.9 9.8E-05 2.1E-09 70.3 11.6 94 2-167 174-269 (454)
244 TIGR02053 MerA mercuric reduct 97.9 1E-05 2.2E-10 78.2 5.1 37 2-43 1-37 (463)
245 PRK12834 putative FAD-binding 97.9 1.1E-05 2.4E-10 79.6 5.4 39 2-44 5-45 (549)
246 PRK12814 putative NADPH-depend 97.9 1E-05 2.2E-10 81.3 5.2 41 2-46 194-234 (652)
247 COG0446 HcaD Uncharacterized N 97.9 6.3E-05 1.4E-09 71.4 10.4 96 2-168 137-235 (415)
248 PRK11749 dihydropyrimidine deh 97.9 1.1E-05 2.3E-10 77.9 5.2 38 2-43 141-178 (457)
249 TIGR01424 gluta_reduc_2 glutat 97.9 0.0001 2.2E-09 70.9 11.9 95 2-168 167-261 (446)
250 TIGR01318 gltD_gamma_fam gluta 97.9 1.2E-05 2.6E-10 77.7 5.4 40 2-45 142-181 (467)
251 PRK07818 dihydrolipoamide dehy 97.9 1.1E-05 2.4E-10 78.0 5.2 38 2-44 5-42 (466)
252 TIGR01372 soxA sarcosine oxida 97.9 1E-05 2.2E-10 85.0 5.2 41 2-46 164-204 (985)
253 PRK06567 putative bifunctional 97.9 1E-05 2.2E-10 82.4 4.9 36 2-41 384-419 (1028)
254 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 1.1E-05 2.4E-10 75.8 4.7 36 2-41 1-36 (433)
255 TIGR02374 nitri_red_nirB nitri 97.9 7.6E-05 1.6E-09 76.6 11.1 96 2-168 141-236 (785)
256 PRK06116 glutathione reductase 97.9 0.00011 2.5E-09 70.7 11.8 95 2-168 168-263 (450)
257 PRK12809 putative oxidoreducta 97.9 1.2E-05 2.6E-10 80.6 5.2 40 2-45 311-350 (639)
258 PTZ00052 thioredoxin reductase 97.9 1.3E-05 2.8E-10 78.1 5.1 33 1-37 5-37 (499)
259 PF07992 Pyr_redox_2: Pyridine 97.9 1.4E-05 3.1E-10 67.8 4.7 33 3-39 1-33 (201)
260 PRK12835 3-ketosteroid-delta-1 97.9 1.3E-05 2.8E-10 79.5 4.9 38 2-43 12-49 (584)
261 PRK06370 mercuric reductase; V 97.9 0.00015 3.2E-09 70.2 12.0 95 2-168 172-269 (463)
262 TIGR01421 gluta_reduc_1 glutat 97.9 0.00013 2.8E-09 70.3 11.5 95 2-168 167-263 (450)
263 KOG0404|consensus 97.9 0.00012 2.6E-09 61.4 9.5 107 2-168 9-122 (322)
264 TIGR03452 mycothione_red mycot 97.9 0.00014 3E-09 70.1 11.6 94 2-168 170-263 (452)
265 PRK05976 dihydrolipoamide dehy 97.9 0.00014 3E-09 70.6 11.7 95 2-168 181-279 (472)
266 TIGR02053 MerA mercuric reduct 97.9 0.00012 2.7E-09 70.7 11.2 95 2-168 167-264 (463)
267 PRK14694 putative mercuric red 97.9 1.5E-05 3.4E-10 77.1 4.9 37 2-43 7-43 (468)
268 PRK13748 putative mercuric red 97.9 1.5E-05 3.4E-10 78.9 4.8 37 2-43 99-135 (561)
269 PRK07818 dihydrolipoamide dehy 97.9 0.00017 3.7E-09 69.8 11.9 95 2-168 173-271 (466)
270 PRK14989 nitrite reductase sub 97.8 0.00013 2.8E-09 75.2 11.5 98 2-168 146-243 (847)
271 TIGR03385 CoA_CoA_reduc CoA-di 97.8 0.00015 3.3E-09 69.4 11.1 94 2-168 138-231 (427)
272 PF00732 GMC_oxred_N: GMC oxid 97.8 1.5E-05 3.2E-10 72.4 3.8 37 2-41 1-37 (296)
273 PRK12844 3-ketosteroid-delta-1 97.8 2E-05 4.4E-10 77.7 5.0 38 2-43 7-44 (557)
274 PRK14727 putative mercuric red 97.8 2.1E-05 4.4E-10 76.4 4.9 38 2-43 17-54 (479)
275 TIGR01317 GOGAT_sm_gam glutama 97.8 2.3E-05 5E-10 76.0 5.2 40 2-45 144-183 (485)
276 PRK06327 dihydrolipoamide dehy 97.8 0.0002 4.4E-09 69.5 11.7 95 2-168 184-282 (475)
277 PRK06912 acoL dihydrolipoamide 97.8 0.00026 5.6E-09 68.4 12.1 95 2-168 171-266 (458)
278 COG2509 Uncharacterized FAD-de 97.8 0.00055 1.2E-08 63.5 13.1 42 123-167 185-227 (486)
279 PRK12771 putative glutamate sy 97.8 2.9E-05 6.2E-10 76.9 5.1 40 2-45 138-177 (564)
280 PRK06115 dihydrolipoamide dehy 97.8 0.00029 6.2E-09 68.2 11.9 95 2-168 175-274 (466)
281 PRK07843 3-ketosteroid-delta-1 97.8 3E-05 6.4E-10 76.6 5.1 38 2-43 8-45 (557)
282 KOG2665|consensus 97.8 0.00017 3.8E-09 63.5 9.1 39 2-42 49-87 (453)
283 PRK09564 coenzyme A disulfide 97.7 0.00026 5.6E-09 68.1 11.2 95 2-168 150-244 (444)
284 KOG2960|consensus 97.7 7.2E-06 1.6E-10 67.9 0.4 40 2-43 77-116 (328)
285 KOG0399|consensus 97.7 3E-05 6.5E-10 78.4 4.3 41 2-46 1786-1826(2142)
286 KOG1298|consensus 97.7 3.2E-05 6.9E-10 69.9 4.0 32 2-37 46-77 (509)
287 PRK12770 putative glutamate sy 97.7 4.5E-05 9.8E-10 71.0 5.3 39 2-44 19-57 (352)
288 PRK08010 pyridine nucleotide-d 97.7 0.00041 8.9E-09 66.7 11.8 94 2-168 159-252 (441)
289 COG3075 GlpB Anaerobic glycero 97.7 4.2E-05 9.1E-10 67.7 4.5 32 2-37 3-34 (421)
290 PRK14694 putative mercuric red 97.7 0.00044 9.6E-09 67.0 11.9 93 2-168 179-271 (468)
291 COG1252 Ndh NADH dehydrogenase 97.7 0.00023 5E-09 66.3 9.2 48 114-168 212-260 (405)
292 PTZ00052 thioredoxin reductase 97.7 0.00043 9.3E-09 67.5 11.4 94 2-168 183-276 (499)
293 PF06100 Strep_67kDa_ant: Stre 97.7 0.0013 2.8E-08 62.3 13.9 47 2-48 3-49 (500)
294 TIGR02462 pyranose_ox pyranose 97.7 5.4E-05 1.2E-09 73.7 5.1 37 2-42 1-37 (544)
295 PRK12845 3-ketosteroid-delta-1 97.7 5E-05 1.1E-09 74.9 4.8 37 2-43 17-53 (564)
296 PRK14727 putative mercuric red 97.6 0.0005 1.1E-08 66.8 11.5 93 2-168 189-281 (479)
297 PRK06912 acoL dihydrolipoamide 97.6 5.8E-05 1.3E-09 72.9 5.0 36 3-43 2-37 (458)
298 PRK13512 coenzyme A disulfide 97.6 0.00037 8.1E-09 66.9 10.4 91 2-168 149-239 (438)
299 PRK13984 putative oxidoreducta 97.6 7.1E-05 1.5E-09 74.9 5.4 40 2-45 284-323 (604)
300 COG1249 Lpd Pyruvate/2-oxoglut 97.6 6.9E-05 1.5E-09 71.3 4.8 38 2-43 5-42 (454)
301 PRK05329 anaerobic glycerol-3- 97.6 7E-05 1.5E-09 70.9 4.8 33 2-38 3-35 (422)
302 PRK13748 putative mercuric red 97.6 0.0006 1.3E-08 67.7 11.6 93 2-168 271-363 (561)
303 TIGR02061 aprA adenosine phosp 97.6 7.3E-05 1.6E-09 74.2 4.9 33 3-39 1-37 (614)
304 TIGR01423 trypano_reduc trypan 97.6 0.00076 1.7E-08 65.4 11.8 94 2-167 188-285 (486)
305 PRK09077 L-aspartate oxidase; 97.6 8.1E-05 1.8E-09 73.2 4.7 36 2-42 9-44 (536)
306 COG3486 IucD Lysine/ornithine 97.5 0.00048 1E-08 63.1 9.1 143 2-167 6-154 (436)
307 TIGR01438 TGR thioredoxin and 97.5 0.00091 2E-08 65.0 11.3 94 2-168 181-277 (484)
308 TIGR01423 trypano_reduc trypan 97.5 0.00012 2.7E-09 70.9 5.2 32 2-37 4-36 (486)
309 PLN02546 glutathione reductase 97.5 0.00012 2.7E-09 71.9 5.1 31 2-36 80-110 (558)
310 PRK02106 choline dehydrogenase 97.5 0.0001 2.2E-09 73.0 4.6 33 2-38 6-39 (560)
311 PTZ00058 glutathione reductase 97.5 0.0012 2.7E-08 65.0 12.0 96 2-168 238-334 (561)
312 COG3573 Predicted oxidoreducta 97.5 0.00014 3.1E-09 64.6 4.7 39 2-44 6-46 (552)
313 TIGR03862 flavo_PP4765 unchara 97.5 0.00047 1E-08 64.1 8.4 53 111-168 83-139 (376)
314 COG1053 SdhA Succinate dehydro 97.4 0.00015 3.2E-09 71.0 4.9 37 2-42 7-43 (562)
315 PTZ00318 NADH dehydrogenase-li 97.4 0.0013 2.8E-08 62.9 10.8 39 122-167 239-277 (424)
316 KOG2852|consensus 97.4 5.9E-05 1.3E-09 65.6 1.3 41 2-42 11-53 (380)
317 KOG1800|consensus 97.4 0.00022 4.9E-09 64.4 4.9 46 2-49 21-66 (468)
318 TIGR01438 TGR thioredoxin and 97.4 0.0002 4.2E-09 69.6 5.0 32 2-37 3-34 (484)
319 TIGR01810 betA choline dehydro 97.4 0.00014 3.1E-09 71.5 3.9 34 3-39 1-34 (532)
320 PRK06467 dihydrolipoamide dehy 97.4 0.0016 3.4E-08 63.2 11.0 94 2-168 175-272 (471)
321 PTZ00153 lipoamide dehydrogena 97.4 0.0014 3E-08 65.7 10.7 35 2-40 313-347 (659)
322 KOG3855|consensus 97.4 0.016 3.5E-07 53.3 16.4 37 2-38 37-73 (481)
323 PLN02546 glutathione reductase 97.4 0.002 4.3E-08 63.5 11.5 96 2-168 253-348 (558)
324 KOG2853|consensus 97.3 0.00018 3.9E-09 64.1 3.6 39 2-40 87-125 (509)
325 PTZ00153 lipoamide dehydrogena 97.3 0.00024 5.2E-09 71.0 4.9 38 2-43 117-155 (659)
326 PF13434 K_oxygenase: L-lysine 97.3 0.00088 1.9E-08 61.9 8.1 133 2-167 191-338 (341)
327 PF00996 GDI: GDP dissociation 97.3 0.002 4.4E-08 61.0 10.6 43 2-48 5-47 (438)
328 PRK13800 putative oxidoreducta 97.3 0.00025 5.4E-09 74.0 4.7 34 2-39 14-47 (897)
329 PRK06292 dihydrolipoamide dehy 97.3 0.0029 6.3E-08 61.2 11.5 94 2-168 170-266 (460)
330 KOG0042|consensus 97.2 0.0034 7.5E-08 59.5 11.0 38 2-43 68-105 (680)
331 TIGR03378 glycerol3P_GlpB glyc 97.2 0.00035 7.6E-09 65.6 4.6 33 2-38 1-33 (419)
332 COG3634 AhpF Alkyl hydroperoxi 97.2 0.00052 1.1E-08 61.4 5.3 112 2-169 212-324 (520)
333 COG2303 BetA Choline dehydroge 97.2 0.00031 6.8E-09 69.0 3.9 33 2-38 8-40 (542)
334 TIGR03140 AhpF alkyl hydropero 97.2 0.0032 6.8E-08 61.8 10.8 33 2-38 353-385 (515)
335 KOG1335|consensus 97.1 0.00066 1.4E-08 61.6 4.3 38 2-43 40-77 (506)
336 COG1206 Gid NAD(FAD)-utilizing 97.0 0.0038 8.3E-08 55.6 8.2 34 2-39 4-37 (439)
337 COG0445 GidA Flavin-dependent 97.0 0.0011 2.3E-08 63.1 4.9 32 2-37 5-36 (621)
338 PLN02785 Protein HOTHEAD 96.9 0.00085 1.9E-08 66.5 4.4 33 2-39 56-88 (587)
339 PRK10262 thioredoxin reductase 96.9 0.0086 1.9E-07 54.9 10.6 33 2-38 147-179 (321)
340 TIGR01292 TRX_reduct thioredox 96.8 0.014 2.9E-07 52.8 11.2 33 2-38 142-174 (300)
341 TIGR03169 Nterm_to_SelD pyridi 96.8 0.016 3.4E-07 54.2 11.2 42 120-168 200-241 (364)
342 PRK15317 alkyl hydroperoxide r 96.6 0.018 3.9E-07 56.6 11.1 33 2-38 352-384 (517)
343 KOG1336|consensus 96.6 0.013 2.7E-07 55.1 9.2 97 3-168 215-311 (478)
344 TIGR03377 glycerol3P_GlpA glyc 96.6 0.24 5.2E-06 48.7 18.5 44 123-169 140-189 (516)
345 KOG1335|consensus 96.6 0.0093 2E-07 54.4 7.7 94 2-167 212-311 (506)
346 PRK11749 dihydropyrimidine deh 96.6 0.023 5.1E-07 54.9 11.2 32 2-37 274-306 (457)
347 PRK07846 mycothione reductase; 96.6 0.003 6.4E-08 60.9 4.8 36 312-347 290-325 (451)
348 KOG3923|consensus 96.4 0.0028 6.1E-08 55.7 3.4 37 1-37 3-42 (342)
349 COG1252 Ndh NADH dehydrogenase 96.4 0.0038 8.3E-08 58.3 4.6 36 1-38 3-38 (405)
350 TIGR03452 mycothione_red mycot 96.4 0.0044 9.5E-08 59.8 4.8 36 312-347 293-328 (452)
351 PRK06129 3-hydroxyacyl-CoA deh 96.3 0.005 1.1E-07 56.2 4.3 34 1-38 2-35 (308)
352 KOG2755|consensus 96.1 0.0042 9.1E-08 53.6 2.8 36 3-40 1-36 (334)
353 KOG1238|consensus 96.1 0.0059 1.3E-07 59.4 4.1 36 2-40 58-93 (623)
354 PF01210 NAD_Gly3P_dh_N: NAD-d 96.1 0.0092 2E-07 48.6 4.7 32 3-38 1-32 (157)
355 PRK01438 murD UDP-N-acetylmura 96.0 0.0086 1.9E-07 58.2 5.0 34 2-39 17-50 (480)
356 PF02737 3HCDH_N: 3-hydroxyacy 96.0 0.01 2.3E-07 49.4 4.6 32 3-38 1-32 (180)
357 KOG1336|consensus 95.9 0.044 9.6E-07 51.5 8.6 41 123-168 139-179 (478)
358 PF02558 ApbA: Ketopantoate re 95.9 0.014 3E-07 47.0 4.9 31 4-38 1-31 (151)
359 PRK12810 gltD glutamate syntha 95.9 0.11 2.3E-06 50.5 11.7 34 2-38 282-315 (471)
360 PRK02705 murD UDP-N-acetylmura 95.7 0.014 2.9E-07 56.5 4.5 34 3-40 2-35 (459)
361 PF03721 UDPG_MGDP_dh_N: UDP-g 95.6 0.014 3.1E-07 48.8 3.8 33 2-38 1-33 (185)
362 PRK08293 3-hydroxybutyryl-CoA 95.6 0.017 3.7E-07 52.1 4.5 33 2-38 4-36 (287)
363 PRK09260 3-hydroxybutyryl-CoA 95.5 0.018 3.9E-07 52.0 4.6 34 1-38 1-34 (288)
364 PRK07819 3-hydroxybutyryl-CoA 95.5 0.021 4.5E-07 51.5 4.7 33 2-38 6-38 (286)
365 COG0569 TrkA K+ transport syst 95.4 0.019 4E-07 49.8 4.1 33 2-38 1-33 (225)
366 PRK08229 2-dehydropantoate 2-r 95.4 0.02 4.3E-07 53.1 4.5 34 1-38 2-35 (341)
367 KOG4716|consensus 95.3 0.017 3.6E-07 51.9 3.5 32 2-37 20-51 (503)
368 PF00743 FMO-like: Flavin-bind 95.3 0.044 9.6E-07 53.8 6.8 32 2-37 184-215 (531)
369 PF03446 NAD_binding_2: NAD bi 95.3 0.028 6E-07 46.1 4.7 34 1-38 1-34 (163)
370 COG1251 NirB NAD(P)H-nitrite r 95.3 0.051 1.1E-06 53.9 7.0 95 3-168 147-241 (793)
371 KOG1346|consensus 95.3 0.055 1.2E-06 50.0 6.7 47 118-168 401-447 (659)
372 PRK05808 3-hydroxybutyryl-CoA 95.2 0.025 5.4E-07 50.9 4.5 34 1-38 3-36 (282)
373 PRK00094 gpsA NAD(P)H-dependen 95.2 0.027 5.9E-07 51.7 4.9 34 1-38 1-34 (325)
374 TIGR01372 soxA sarcosine oxida 95.2 0.15 3.3E-06 54.1 11.0 33 2-37 318-350 (985)
375 PRK07066 3-hydroxybutyryl-CoA 95.2 0.026 5.6E-07 51.5 4.6 33 2-38 8-40 (321)
376 PRK06249 2-dehydropantoate 2-r 95.1 0.032 7E-07 51.0 4.8 33 2-38 6-38 (313)
377 PRK07530 3-hydroxybutyryl-CoA 94.9 0.041 8.8E-07 49.8 4.8 33 2-38 5-37 (292)
378 PRK06035 3-hydroxyacyl-CoA deh 94.9 0.04 8.7E-07 49.8 4.8 33 2-38 4-36 (291)
379 PRK11064 wecC UDP-N-acetyl-D-m 94.7 0.037 8E-07 52.6 4.3 34 1-38 3-36 (415)
380 PRK14106 murD UDP-N-acetylmura 94.7 0.044 9.5E-07 52.9 4.8 33 2-38 6-38 (450)
381 PLN02545 3-hydroxybutyryl-CoA 94.6 0.048 1.1E-06 49.4 4.7 33 2-38 5-37 (295)
382 PRK06223 malate dehydrogenase; 94.6 0.057 1.2E-06 49.2 5.1 34 1-38 2-36 (307)
383 PRK05708 2-dehydropantoate 2-r 94.6 0.045 9.7E-07 49.8 4.3 32 2-37 3-34 (305)
384 PRK06130 3-hydroxybutyryl-CoA 94.5 0.053 1.1E-06 49.5 4.8 33 2-38 5-37 (311)
385 cd01080 NAD_bind_m-THF_DH_Cycl 94.5 0.06 1.3E-06 44.2 4.6 32 2-37 45-77 (168)
386 COG4716 Myosin-crossreactive a 94.4 0.018 3.9E-07 52.4 1.4 45 2-46 23-67 (587)
387 COG1251 NirB NAD(P)H-nitrite r 94.4 0.24 5.2E-06 49.4 9.1 108 2-168 4-111 (793)
388 KOG0405|consensus 94.4 0.05 1.1E-06 49.1 4.0 38 2-43 21-58 (478)
389 PRK12921 2-dehydropantoate 2-r 94.4 0.051 1.1E-06 49.4 4.3 30 3-36 2-31 (305)
390 PRK06522 2-dehydropantoate 2-r 94.4 0.055 1.2E-06 49.1 4.5 31 3-37 2-32 (304)
391 PRK12769 putative oxidoreducta 94.3 0.56 1.2E-05 47.6 12.0 34 2-38 469-502 (654)
392 PF01262 AlaDh_PNT_C: Alanine 94.3 0.083 1.8E-06 43.5 4.9 33 2-38 21-53 (168)
393 cd05292 LDH_2 A subgroup of L- 94.3 0.073 1.6E-06 48.5 5.0 34 3-38 2-35 (308)
394 COG1748 LYS9 Saccharopine dehy 94.2 0.068 1.5E-06 49.8 4.7 34 1-37 1-34 (389)
395 PRK14618 NAD(P)H-dependent gly 94.2 0.07 1.5E-06 49.1 4.8 34 1-38 4-37 (328)
396 TIGR01470 cysG_Nterm siroheme 94.1 0.078 1.7E-06 45.2 4.6 32 2-37 10-41 (205)
397 TIGR03143 AhpF_homolog putativ 94.1 0.063 1.4E-06 53.3 4.6 35 2-40 144-178 (555)
398 TIGR01316 gltA glutamate synth 94.1 0.072 1.6E-06 51.4 4.8 33 2-38 273-305 (449)
399 COG0686 Ald Alanine dehydrogen 93.9 0.055 1.2E-06 48.1 3.3 31 3-37 170-200 (371)
400 PLN02353 probable UDP-glucose 93.9 0.075 1.6E-06 51.3 4.5 36 1-38 1-36 (473)
401 PF13241 NAD_binding_7: Putati 93.9 0.064 1.4E-06 40.2 3.2 32 2-37 8-39 (103)
402 PRK01710 murD UDP-N-acetylmura 93.8 0.087 1.9E-06 50.9 4.7 33 2-38 15-47 (458)
403 COG0771 MurD UDP-N-acetylmuram 93.7 0.08 1.7E-06 50.3 4.2 36 1-40 7-42 (448)
404 PF01488 Shikimate_DH: Shikima 93.6 0.13 2.8E-06 40.6 4.7 33 2-37 13-45 (135)
405 KOG2304|consensus 93.6 0.063 1.4E-06 45.4 3.0 36 1-40 11-46 (298)
406 PRK15461 NADH-dependent gamma- 93.6 0.094 2E-06 47.5 4.4 34 1-38 1-34 (296)
407 PRK06718 precorrin-2 dehydroge 93.6 0.11 2.4E-06 44.1 4.6 31 2-36 11-41 (202)
408 PRK06719 precorrin-2 dehydroge 93.6 0.12 2.6E-06 42.0 4.5 30 2-35 14-43 (157)
409 COG1004 Ugd Predicted UDP-gluc 93.6 0.096 2.1E-06 48.4 4.3 33 2-38 1-33 (414)
410 PRK12831 putative oxidoreducta 93.6 0.099 2.1E-06 50.6 4.7 33 2-38 282-314 (464)
411 TIGR01763 MalateDH_bact malate 93.5 0.11 2.5E-06 47.1 4.8 35 2-40 2-37 (305)
412 PF00056 Ldh_1_N: lactate/mala 93.5 0.17 3.7E-06 40.3 5.2 35 2-38 1-36 (141)
413 PRK04690 murD UDP-N-acetylmura 93.4 0.1 2.2E-06 50.5 4.5 33 2-38 9-41 (468)
414 PRK12770 putative glutamate sy 93.3 0.11 2.3E-06 48.4 4.4 32 2-37 173-205 (352)
415 PRK14620 NAD(P)H-dependent gly 93.3 0.12 2.6E-06 47.5 4.7 32 3-38 2-33 (326)
416 PRK07417 arogenate dehydrogena 93.2 0.12 2.6E-06 46.4 4.5 32 3-38 2-33 (279)
417 TIGR00518 alaDH alanine dehydr 93.2 0.13 2.7E-06 48.2 4.7 33 2-38 168-200 (370)
418 PRK04148 hypothetical protein; 93.1 0.099 2.2E-06 40.9 3.2 32 3-39 19-50 (134)
419 TIGR03026 NDP-sugDHase nucleot 92.9 0.11 2.5E-06 49.3 4.0 33 3-39 2-34 (411)
420 cd05191 NAD_bind_amino_acid_DH 92.9 0.22 4.8E-06 35.8 4.6 32 2-36 24-55 (86)
421 PRK14619 NAD(P)H-dependent gly 92.8 0.16 3.6E-06 46.2 4.7 33 2-38 5-37 (308)
422 PRK03369 murD UDP-N-acetylmura 92.7 0.15 3.2E-06 49.8 4.6 32 2-37 13-44 (488)
423 TIGR02354 thiF_fam2 thiamine b 92.7 0.19 4.1E-06 42.7 4.6 32 2-37 22-54 (200)
424 cd00401 AdoHcyase S-adenosyl-L 92.7 0.17 3.7E-06 47.8 4.7 33 2-38 203-235 (413)
425 PRK07531 bifunctional 3-hydrox 92.7 0.15 3.2E-06 49.8 4.4 33 2-38 5-37 (495)
426 PRK08268 3-hydroxy-acyl-CoA de 92.6 0.17 3.7E-06 49.5 4.8 34 2-39 8-41 (507)
427 COG1893 ApbA Ketopantoate redu 92.6 0.13 2.8E-06 46.8 3.7 34 2-39 1-34 (307)
428 PRK00141 murD UDP-N-acetylmura 92.6 0.17 3.6E-06 49.2 4.7 33 1-37 15-47 (473)
429 PF02254 TrkA_N: TrkA-N domain 92.5 0.26 5.6E-06 37.5 4.8 31 4-38 1-31 (116)
430 PRK09424 pntA NAD(P) transhydr 92.4 0.18 3.9E-06 49.0 4.6 32 3-38 167-198 (509)
431 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.4 0.18 3.9E-06 49.2 4.6 33 2-38 6-38 (503)
432 PRK11730 fadB multifunctional 92.4 0.17 3.6E-06 51.8 4.5 33 2-38 314-346 (715)
433 PTZ00082 L-lactate dehydrogena 92.3 0.24 5.1E-06 45.4 5.0 35 2-39 7-41 (321)
434 PF00899 ThiF: ThiF family; I 92.2 0.3 6.6E-06 38.4 5.0 33 2-37 3-35 (135)
435 cd05291 HicDH_like L-2-hydroxy 92.1 0.25 5.5E-06 45.0 5.0 36 2-39 1-36 (306)
436 PRK04308 murD UDP-N-acetylmura 92.1 0.23 5E-06 47.8 5.0 34 2-39 6-39 (445)
437 PRK02006 murD UDP-N-acetylmura 92.1 0.2 4.3E-06 49.1 4.6 33 2-38 8-40 (498)
438 PRK00421 murC UDP-N-acetylmura 92.0 0.17 3.8E-06 48.9 4.1 34 2-39 8-42 (461)
439 PRK08306 dipicolinate synthase 92.0 0.24 5.3E-06 44.8 4.8 33 2-38 153-185 (296)
440 COG2085 Predicted dinucleotide 92.0 0.21 4.5E-06 42.2 3.9 30 1-34 1-30 (211)
441 PRK15057 UDP-glucose 6-dehydro 92.0 0.21 4.5E-06 47.1 4.4 31 3-38 2-32 (388)
442 TIGR02437 FadB fatty oxidation 91.9 0.2 4.4E-06 51.1 4.5 33 2-38 314-346 (714)
443 PTZ00142 6-phosphogluconate de 91.9 0.21 4.5E-06 48.3 4.4 35 1-39 1-35 (470)
444 PRK02472 murD UDP-N-acetylmura 91.8 0.23 5E-06 47.8 4.7 33 2-38 6-38 (447)
445 PRK11559 garR tartronate semia 91.8 0.24 5.2E-06 44.8 4.5 34 1-38 2-35 (296)
446 COG0287 TyrA Prephenate dehydr 91.7 0.27 5.8E-06 44.0 4.6 36 1-40 3-38 (279)
447 PRK07502 cyclohexadienyl dehyd 91.7 0.25 5.4E-06 45.0 4.6 35 2-38 7-41 (307)
448 PRK12549 shikimate 5-dehydroge 91.7 0.26 5.7E-06 44.3 4.6 33 2-37 128-160 (284)
449 PRK11199 tyrA bifunctional cho 91.7 0.23 4.9E-06 46.6 4.3 33 2-38 99-132 (374)
450 KOG2311|consensus 91.6 0.16 3.4E-06 48.0 3.1 32 2-37 29-60 (679)
451 TIGR01915 npdG NADPH-dependent 91.5 0.29 6.2E-06 42.2 4.5 31 3-37 2-33 (219)
452 TIGR02853 spore_dpaA dipicolin 91.5 0.29 6.2E-06 44.1 4.6 33 2-38 152-184 (287)
453 COG1250 FadB 3-hydroxyacyl-CoA 91.5 0.22 4.8E-06 44.9 3.9 32 2-37 4-35 (307)
454 PRK00683 murD UDP-N-acetylmura 91.4 0.26 5.6E-06 47.1 4.5 33 2-38 4-36 (418)
455 cd01075 NAD_bind_Leu_Phe_Val_D 91.4 0.32 7E-06 41.2 4.6 32 2-37 29-60 (200)
456 COG3634 AhpF Alkyl hydroperoxi 91.3 0.18 3.9E-06 45.7 3.0 33 2-38 355-387 (520)
457 PRK12778 putative bifunctional 91.3 0.24 5.3E-06 51.1 4.5 33 2-38 571-604 (752)
458 PRK01368 murD UDP-N-acetylmura 91.3 0.24 5.1E-06 47.8 4.1 31 2-37 7-37 (454)
459 TIGR02440 FadJ fatty oxidation 91.2 0.28 6E-06 50.1 4.7 33 2-38 305-338 (699)
460 cd05311 NAD_bind_2_malic_enz N 91.2 0.31 6.6E-06 42.3 4.3 32 2-37 26-60 (226)
461 TIGR02441 fa_ox_alpha_mit fatt 91.0 0.26 5.7E-06 50.4 4.3 33 2-38 336-368 (737)
462 TIGR00561 pntA NAD(P) transhyd 91.0 0.32 6.9E-06 47.2 4.6 33 2-38 165-197 (511)
463 COG3486 IucD Lysine/ornithine 90.9 1.9 4.1E-05 40.2 9.2 41 127-169 293-339 (436)
464 cd05293 LDH_1 A subgroup of L- 90.8 0.42 9.1E-06 43.6 5.0 35 2-38 4-38 (312)
465 PTZ00325 malate dehydrogenase; 90.7 0.44 9.5E-06 43.6 5.1 34 1-36 8-42 (321)
466 TIGR00936 ahcY adenosylhomocys 90.6 0.38 8.3E-06 45.3 4.6 33 2-38 196-228 (406)
467 TIGR01317 GOGAT_sm_gam glutama 90.6 0.39 8.6E-06 46.8 5.0 36 2-40 284-319 (485)
468 cd01339 LDH-like_MDH L-lactate 90.5 0.35 7.6E-06 43.9 4.3 31 4-38 1-32 (300)
469 PRK11154 fadJ multifunctional 90.5 0.34 7.3E-06 49.5 4.5 33 2-38 310-343 (708)
470 PRK00066 ldh L-lactate dehydro 90.4 0.44 9.6E-06 43.5 4.8 35 2-38 7-41 (315)
471 PRK07688 thiamine/molybdopteri 90.3 0.44 9.6E-06 44.0 4.8 33 2-37 25-57 (339)
472 TIGR01505 tartro_sem_red 2-hyd 90.2 0.38 8.2E-06 43.4 4.2 32 3-38 1-32 (291)
473 PRK12475 thiamine/molybdopteri 90.1 0.45 9.7E-06 43.9 4.7 34 2-38 25-58 (338)
474 cd05290 LDH_3 A subgroup of L- 90.1 0.53 1.1E-05 42.8 5.0 34 3-38 1-34 (307)
475 PRK11908 NAD-dependent epimera 90.1 0.45 9.7E-06 44.1 4.7 34 1-37 1-35 (347)
476 PRK09496 trkA potassium transp 90.1 0.41 8.8E-06 46.2 4.5 32 3-38 2-33 (453)
477 TIGR03378 glycerol3P_GlpB glyc 90.1 1.2 2.6E-05 42.2 7.5 56 115-174 268-326 (419)
478 cd05213 NAD_bind_Glutamyl_tRNA 90.0 0.44 9.6E-06 43.5 4.5 33 2-37 179-211 (311)
479 PRK15116 sulfur acceptor prote 90.0 0.54 1.2E-05 41.7 4.9 34 2-38 31-64 (268)
480 PRK08017 oxidoreductase; Provi 90.0 0.5 1.1E-05 41.4 4.8 33 2-38 3-36 (256)
481 cd01065 NAD_bind_Shikimate_DH 90.0 0.56 1.2E-05 37.7 4.7 33 2-37 20-52 (155)
482 KOG3851|consensus 89.9 0.31 6.8E-06 43.7 3.2 34 3-38 41-74 (446)
483 PLN02172 flavin-containing mon 89.9 0.36 7.7E-06 46.7 4.0 33 2-38 205-237 (461)
484 PRK03803 murD UDP-N-acetylmura 89.8 0.42 9.2E-06 46.0 4.5 32 3-38 8-39 (448)
485 cd01487 E1_ThiF_like E1_ThiF_l 89.7 0.63 1.4E-05 38.5 4.8 32 3-37 1-32 (174)
486 PLN02256 arogenate dehydrogena 89.7 0.54 1.2E-05 42.7 4.7 33 2-38 37-69 (304)
487 PF00670 AdoHcyase_NAD: S-aden 89.7 0.52 1.1E-05 38.2 4.1 33 2-38 24-56 (162)
488 PRK15181 Vi polysaccharide bio 89.7 0.55 1.2E-05 43.5 5.0 34 1-38 15-49 (348)
489 PRK09496 trkA potassium transp 89.6 0.52 1.1E-05 45.4 4.9 34 1-38 231-264 (453)
490 PRK08644 thiamine biosynthesis 89.4 0.67 1.4E-05 39.7 4.9 33 2-37 29-61 (212)
491 cd01078 NAD_bind_H4MPT_DH NADP 89.4 0.6 1.3E-05 39.3 4.6 32 2-37 29-61 (194)
492 cd01483 E1_enzyme_family Super 89.4 0.7 1.5E-05 36.7 4.7 33 3-38 1-33 (143)
493 TIGR00507 aroE shikimate 5-deh 89.3 0.58 1.2E-05 41.8 4.6 32 2-37 118-149 (270)
494 PF13478 XdhC_C: XdhC Rossmann 89.3 0.63 1.4E-05 36.8 4.3 31 4-38 1-31 (136)
495 PRK01390 murD UDP-N-acetylmura 89.3 0.46 1E-05 46.0 4.3 32 2-37 10-41 (460)
496 PRK05476 S-adenosyl-L-homocyst 89.1 0.58 1.3E-05 44.4 4.6 33 2-38 213-245 (425)
497 PRK12779 putative bifunctional 89.0 0.53 1.1E-05 49.6 4.7 33 2-38 448-480 (944)
498 COG1063 Tdh Threonine dehydrog 88.9 0.53 1.2E-05 43.7 4.3 33 3-38 171-203 (350)
499 PRK06019 phosphoribosylaminoim 88.9 0.67 1.5E-05 43.5 5.0 34 1-38 2-35 (372)
500 TIGR00872 gnd_rel 6-phosphoglu 88.9 0.62 1.4E-05 42.2 4.6 32 3-38 2-33 (298)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.4e-52 Score=351.50 Aligned_cols=322 Identities=23% Similarity=0.388 Sum_probs=274.0
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecC-hhcchhHHHhhh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTT-PDFLSNHTDIYQ 79 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~-~~~~~~~~~~~~ 79 (365)
|.+|+|||+||+||+||+.|+++| +.|+||||++.+|||+.|++.. +..+|+|+++|++. +.|. ++++
T Consensus 1 ~~siaIVGaGiAGl~aA~~L~~aG----~~vtV~eKg~GvGGRlAtRRl~---~g~~DhGAqYfk~~~~~F~----~~Ve 69 (331)
T COG3380 1 MPSIAIVGAGIAGLAAAYALREAG----REVTVFEKGRGVGGRLATRRLD---GGRFDHGAQYFKPRDELFL----RAVE 69 (331)
T ss_pred CCcEEEEccchHHHHHHHHHHhcC----cEEEEEEcCCCcccchheeccC---CccccccceeecCCchHHH----HHHH
Confidence 789999999999999999999998 9999999999999999999985 45699999999984 3343 7788
Q ss_pred hhhhcCcccccccccccc-----cccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCC
Q psy12489 80 PLLDEKLLEPFTANIIGY-----KSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEG 154 (365)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g 154 (365)
.|.+.|++..|......+ +.. .....|...+||.++.+.|+. + .+|+++++|+.|.+.+ +.|++.+++|
T Consensus 70 ~~~~~glV~~W~~~~~~~~~~~~~~~-~d~~pyvg~pgmsalak~LAt--d-L~V~~~~rVt~v~~~~--~~W~l~~~~g 143 (331)
T COG3380 70 ALRDDGLVDVWTPAVWTFTGDGSPPR-GDEDPYVGEPGMSALAKFLAT--D-LTVVLETRVTEVARTD--NDWTLHTDDG 143 (331)
T ss_pred HHHhCCceeeccccccccccCCCCCC-CCCCccccCcchHHHHHHHhc--c-chhhhhhhhhhheecC--CeeEEEecCC
Confidence 899999999996542221 111 122239999999999999987 4 7899999999999998 9999999776
Q ss_pred -CeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEEEEeccCCCCCCcceEEecCCCcEEEeeecC
Q psy12489 155 -KKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEIIRYISFDN 233 (365)
Q Consensus 155 -~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (365)
+...+|.||+|+|.|++..||.... ..+|++++..+..+.|.||+++++.|..+.+.|+.++++ ++.++.|+..++
T Consensus 144 ~~~~~~d~vvla~PAPQ~~~LLt~~~--~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G~~v-dg~~laWla~d~ 220 (331)
T COG3380 144 TRHTQFDDVVLAIPAPQTATLLTTDA--DDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPGNFV-DGHPLAWLARDA 220 (331)
T ss_pred CcccccceEEEecCCCcchhhcCccc--ccchHHHHHhhccceehhHHHHHhcCCccCCCCCCCccc-CCCeeeeeeccc
Confidence 4678999999999999999997543 568999999999999999999999999999899999766 556999999998
Q ss_pred CCCCCCCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCC-CCCCCceEeeecCCCCCCcCCCCCcccceeec
Q psy12489 234 VKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFP-SWPLPAETKLQTWKYSQVVDPHRDKLGFMQFS 312 (365)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~-~~~~~~~~~~~rw~~a~~~~~~~~~~~~~~~~ 312 (365)
+|+++.+.+..++++++.+|++++++.++|+ .+..+.....++++ ..++|.+...|+|+|+.|..... ..++...
T Consensus 221 sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~--~i~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~--~~~L~ad 296 (331)
T COG3380 221 SKKGHVPDGEIWVVQASPDWSREHLDHPAEQ--VIVALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVA--GPPLDAD 296 (331)
T ss_pred cCCCCCCcCceEEEEeCchHHHHhhcCCHHH--HHHHHHHhhhhccCCCCCcchHHHhhcccccccccccc--CCccccC
Confidence 9988766677999999999999999999888 88888888888877 36789999999999999987653 2345433
Q ss_pred CCCeEEEecccccCCCchhHHHHHHHHHHhhhhcc
Q psy12489 313 AKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMVG 347 (365)
Q Consensus 313 ~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~~ 347 (365)
...+|++||||+. ++.+|||+.||..+|+.|+.+
T Consensus 297 ~~~~l~~cGDwc~-GgrVEgA~LSGlAaA~~i~~~ 330 (331)
T COG3380 297 RELPLYACGDWCA-GGRVEGAVLSGLAAADHILNG 330 (331)
T ss_pred CCCceeeeccccc-CcchhHHHhccHHHHHHHHhc
Confidence 3457999999999 999999999999999999753
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=7.5e-34 Score=273.76 Aligned_cols=327 Identities=15% Similarity=0.181 Sum_probs=230.8
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeec-ChhcchhHHHhhh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITT-TPDFLSNHTDIYQ 79 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~-~~~~~~~~~~~~~ 79 (365)
|+||+|||||+|||++|+.|++++++.|++|+|||+++++|||+.|.... ++.+|.|++++.. +++.. ++++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~---g~~~e~G~~~~~~~~~~~~----~l~~ 74 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED---GYLIERGPDSFLERKKSAP----DLVK 74 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC---CEEEecCccccccCChHHH----HHHH
Confidence 68999999999999999999999211119999999999999999998763 5789999998876 33222 2222
Q ss_pred hhh-----------------hcCcccccc---------------------------------ccc---------------
Q psy12489 80 PLL-----------------DEKLLEPFT---------------------------------ANI--------------- 94 (365)
Q Consensus 80 ~l~-----------------~~~~~~~~~---------------------------------~~~--------------- 94 (365)
++. ..|....+. ..+
T Consensus 75 ~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~~g~~~~~~ 154 (462)
T TIGR00562 75 DLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRRFGDEVVEN 154 (462)
T ss_pred HcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHhcCHHHHHH
Confidence 110 001100000 000
Q ss_pred ------ccc--------ccc----------------------CC--C-------------cceEEcCCChHHHHHHHHhh
Q psy12489 95 ------IGY--------KSR----------------------KK--N-------------VTHYVTPQGSSSIVKYFLNK 123 (365)
Q Consensus 95 ------~~~--------~~~----------------------~~--~-------------~~~~~~~~g~~~l~~~l~~~ 123 (365)
.++ ... .. . ...+...+|++++++.|++.
T Consensus 155 ~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~ 234 (462)
T TIGR00562 155 LIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKR 234 (462)
T ss_pred HHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHH
Confidence 000 000 00 0 01344678999999999988
Q ss_pred CCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEE
Q psy12489 124 SNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAF 203 (365)
Q Consensus 124 ~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v 203 (365)
++..+|+++++|++|+.++ ++|.|++.+|+++.||+||+|+|++++..++++ ++....+.+++++|.++.++
T Consensus 235 l~~~~i~~~~~V~~I~~~~--~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~------~~~~~~~~l~~l~~~~~~~v 306 (462)
T TIGR00562 235 LKLTKVYKGTKVTKLSHRG--SNYTLELDNGVTVETDSVVVTAPHKAAAGLLSE------LSNSASSHLDKIHSPPVANV 306 (462)
T ss_pred hccCeEEcCCeEEEEEecC--CcEEEEECCCcEEEcCEEEECCCHHHHHHHhcc------cCHHHHHHHhcCCCCceEEE
Confidence 7536899999999999988 889998888888999999999999999888754 44567888899999999999
Q ss_pred EEeccCCCC-CC--cceEEecCC---CcEEEeeecCCCCCCCCCC-ceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHH
Q psy12489 204 GMFFDKQFE-RP--FDIKYFDDN---EIIRYISFDNVKRNRPDEP-ISVCVHTTTQYYNSFLDSETPRNVIERELLDLIR 276 (365)
Q Consensus 204 ~l~~~~~~~-~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~ 276 (365)
++.|+++.+ .+ ..+.+++++ ..+.+++..+..+++.+.+ ..++++....++.+..+.++++ +++.++++|.
T Consensus 307 ~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee--~~~~v~~~L~ 384 (462)
T TIGR00562 307 NLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENE--IINIVLRDLK 384 (462)
T ss_pred EEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHH--HHHHHHHHHH
Confidence 999987632 22 233344332 2356666545555543323 3455555554555556667777 9999999999
Q ss_pred hHCCCCCCCceEeeecCCCCCCcCCCCCccccee------ecCCCeEEEecccccCCCchhHHHHHHHHHHhhhhc
Q psy12489 277 KMFPSWPLPAETKLQTWKYSQVVDPHRDKLGFMQ------FSAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMV 346 (365)
Q Consensus 277 ~~~~~~~~~~~~~~~rw~~a~~~~~~~~~~~~~~------~~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~ 346 (365)
++++...+|.+..++||.++.|.+..++. ..+. ....++|++||||+. +.++++|+.||.++|++|+.
T Consensus 385 ~~~gi~~~p~~~~v~rw~~a~P~~~~g~~-~~~~~i~~~l~~~~~~l~l~G~~~~-g~~i~~~i~sg~~~a~~~~~ 458 (462)
T TIGR00562 385 KVLNINNEPEMLCVTRWHRAIPQYHVGHD-QRLKEARELLESAYPGVFLTGNSFE-GVGIPDCIDQGKAAASDVLT 458 (462)
T ss_pred HHhCCCCCCcEEEEeEccccCCCCCCChH-HHHHHHHHHHHhhCCCEEEeccccC-CCcHHHHHHHHHHHHHHHHH
Confidence 99975445888999999999998765421 1111 122358999999999 88999999999999999874
No 3
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=3.8e-33 Score=266.66 Aligned_cols=320 Identities=13% Similarity=0.155 Sum_probs=218.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecC---hhcchhHHHhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTT---PDFLSNHTDIY 78 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~---~~~~~~~~~~~ 78 (365)
++|+|||||+|||+||+.|+++| ++|+|||+++++|||+.|... .++.+|+|++|++.. +... .++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g----~~v~vlEa~~r~GGri~t~~~---~g~~~d~G~~~i~~~~~~~~~~----~l~ 69 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDAS----FKVTLLESRDRIGGRVHTDYS---FGFPVDMGASWLHGVCNENPLA----PLI 69 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC----CeEEEEeCCCCCCceeeecCc---CCcccCCCCeeEeccCCCchHH----HHH
Confidence 48999999999999999999997 999999999999999999764 357899999998641 1111 222
Q ss_pred hhhhhc--------------C--------------------------------------------ccccccccc------
Q psy12489 79 QPLLDE--------------K--------------------------------------------LLEPFTANI------ 94 (365)
Q Consensus 79 ~~l~~~--------------~--------------------------------------------~~~~~~~~~------ 94 (365)
+++.-. + .+..|...+
T Consensus 70 ~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 149 (435)
T PLN02268 70 GRLGLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKVRDEHEEDMSLLQAISIVLERHPE 149 (435)
T ss_pred HHhCCceEeccCCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHHhhhCcc
Confidence 221100 0 000000000
Q ss_pred ------------------ccc--------ccc--CC----CcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecC
Q psy12489 95 ------------------IGY--------KSR--KK----NVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTD 142 (365)
Q Consensus 95 ------------------~~~--------~~~--~~----~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~ 142 (365)
.+. ... .. ........+|+++++++|++ + .+|+++++|++|+.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~g~~~~~~~G~~~l~~~l~~--~-~~i~~~~~V~~i~~~~ 226 (435)
T PLN02268 150 LRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEELLEGGHGLMVRGYDPVINTLAK--G-LDIRLNHRVTKIVRRY 226 (435)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCCccccCCCceeecCCHHHHHHHHhc--c-CceeCCCeeEEEEEcC
Confidence 000 000 00 00012234589999999987 5 7899999999999988
Q ss_pred CCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEEEEeccCCCCCC--cceEEe
Q psy12489 143 STNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERP--FDIKYF 220 (365)
Q Consensus 143 ~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~--~~~~~~ 220 (365)
++|.|++.+|+++.||+||+|+|+..+.+. .+.|.|+||...++++++++|.+..++++.|++++|.. +.+...
T Consensus 227 --~~v~v~~~~g~~~~ad~VIva~P~~~l~~~--~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~ 302 (435)
T PLN02268 227 --NGVKVTVEDGTTFVADAAIIAVPLGVLKAN--IIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVA 302 (435)
T ss_pred --CcEEEEECCCcEEEcCEEEEecCHHHHhcC--cceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccC
Confidence 889999988888999999999998876542 24566789999999999999999999999999997742 333332
Q ss_pred cCCCcEEEeeecCCCCCCCCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCCCCCCCceEeeecCC---CCC
Q psy12489 221 DDNEIIRYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPLPAETKLQTWK---YSQ 297 (365)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~rw~---~a~ 297 (365)
+......+... ... +.+...++++....++.+..+.++++ +++.++++|.++||...+|....+++|. |+.
T Consensus 303 ~~~~~~~~~~~-~~~---~~g~~~l~~~~~g~~a~~~~~~~~~e--~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~ 376 (435)
T PLN02268 303 PTSYGCSYFLN-LHK---ATGHPVLVYMPAGRLARDIEKLSDEA--AANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSL 376 (435)
T ss_pred CCCCCceEEEe-ccc---CCCCCEEEEEeccHHHHHHHhCCHHH--HHHHHHHHHHHHcCCCCCccEEEecccCCCCCCC
Confidence 22222222221 111 11123566666666666666667788 9999999999999866678888889997 222
Q ss_pred CcCC---CCCc---ccceeecCCCeEEEecccccC--CCchhHHHHHHHHHHhhhhc
Q psy12489 298 VVDP---HRDK---LGFMQFSAKPLVICIGDSYVP--QSNFDGCIHSAKQTTGASMV 346 (365)
Q Consensus 298 ~~~~---~~~~---~~~~~~~~~~~l~~aGd~~~~--~~~~~gA~~SG~~aA~~l~~ 346 (365)
..+. ++.. ...+. .+.++||||||++.. .|+||||+.||++||++|+.
T Consensus 377 G~~~~~~~g~~~~~~~~l~-~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~ 432 (435)
T PLN02268 377 GCYSYDLVGKPHDLYERLR-APVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRM 432 (435)
T ss_pred ccCCCCCCCCCHHHHHHHh-CCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHH
Confidence 1111 1100 01222 345789999999882 48999999999999999984
No 4
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=4.2e-32 Score=261.40 Aligned_cols=325 Identities=17% Similarity=0.190 Sum_probs=220.0
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCC--CceeEEEEecCCCCCccceeecCCCCCCeeeecccceeec-ChhcchhHHHh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLT--DLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITT-TPDFLSNHTDI 77 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~--~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~-~~~~~~~~~~~ 77 (365)
|++|+|||||+|||++|+.|+++|+. .|.+|+|||+++++|||+.|.+.. ++.+|.|++++.. ++... ++
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~---g~~~e~G~~~i~~~~~~~~----~l 73 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK---DFIMESGADSIVARNEHVM----PL 73 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC---CEEEecCcHHHhcCCHHHH----HH
Confidence 88999999999999999999997421 027999999999999999998763 5789999988765 23322 22
Q ss_pred hhhhhh--------c--------Cccc----------------------------------------ccccc--c-----
Q psy12489 78 YQPLLD--------E--------KLLE----------------------------------------PFTAN--I----- 94 (365)
Q Consensus 78 ~~~l~~--------~--------~~~~----------------------------------------~~~~~--~----- 94 (365)
++++.- . +... .|..+ +
T Consensus 74 ~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~ 153 (463)
T PRK12416 74 VKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLALFLE 153 (463)
T ss_pred HHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhccCCCCCCCCCCHHHHHH
Confidence 222110 0 0000 00000 0
Q ss_pred ----------------cc--------cccc------------------------C----C-CcceEEcCCChHHHHHHHH
Q psy12489 95 ----------------IG--------YKSR------------------------K----K-NVTHYVTPQGSSSIVKYFL 121 (365)
Q Consensus 95 ----------------~~--------~~~~------------------------~----~-~~~~~~~~~g~~~l~~~l~ 121 (365)
.+ +... . . ....+.+.+||+++++.|+
T Consensus 154 ~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~ 233 (463)
T PRK12416 154 SFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLE 233 (463)
T ss_pred HhcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHH
Confidence 00 0000 0 0 0123456899999999999
Q ss_pred hhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCcccee
Q psy12489 122 NKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRY 201 (365)
Q Consensus 122 ~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~ 201 (365)
+.++..+|+++++|++|+.++ ++|.|++.+|+++.||+||+|+|++.+..|+.+ +.+ ...+.++.+.++.
T Consensus 234 ~~l~~~~i~~~~~V~~I~~~~--~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~----~~l----~~~~~~~~~~~~~ 303 (463)
T PRK12416 234 EVLTETVVKKGAVTTAVSKQG--DRYEISFANHESIQADYVVLAAPHDIAETLLQS----NEL----NEQFHTFKNSSLI 303 (463)
T ss_pred HhcccccEEcCCEEEEEEEcC--CEEEEEECCCCEEEeCEEEECCCHHHHHhhcCC----cch----hHHHhcCCCCceE
Confidence 987524799999999999988 889998888888999999999999888887754 334 3345677889999
Q ss_pred EEEEeccCCCC-CC--cceEEecCCCcEEE--eeecCC-CCCCCCCCceEEE-EeC--hhhhhhhcCCCCchhhHHHHHH
Q psy12489 202 AFGMFFDKQFE-RP--FDIKYFDDNEIIRY--ISFDNV-KRNRPDEPISVCV-HTT--TQYYNSFLDSETPRNVIERELL 272 (365)
Q Consensus 202 ~v~l~~~~~~~-~~--~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~e~~~~~~~~~ 272 (365)
++++.|+++.+ .+ ..+++++++..+.+ +...+. .+.+++....++. +.. ....++..+.++++ +.+.++
T Consensus 304 ~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee--~~~~~~ 381 (463)
T PRK12416 304 SIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEE--LVRVAL 381 (463)
T ss_pred EEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHH--HHHHHH
Confidence 99999997632 22 34455554433211 112222 2333332333222 221 12333444557777 999999
Q ss_pred HHHHhHCCCCCCCceEeeecCCCCCCcCCCCCcc------cceeecCCCeEEEecccccCCCchhHHHHHHHHHHhhhhc
Q psy12489 273 DLIRKMFPSWPLPAETKLQTWKYSQVVDPHRDKL------GFMQFSAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMV 346 (365)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~rw~~a~~~~~~~~~~------~~~~~~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~ 346 (365)
++|+++|+...+|....+++|.++.|.+..++.. ..+. ...++|++||+++. +.+|++|+.||+++|++|+.
T Consensus 382 ~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~-~~~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~ 459 (463)
T PRK12416 382 YDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMM-NLYPNIYLAGASYY-GVGIGACIGNGKNTANEIIA 459 (463)
T ss_pred HHHHHHhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHH-hhCCCeEEeccccc-cccHHHHHHHHHHHHHHHHH
Confidence 9999999865678889999999999987543210 1111 23468999999999 88999999999999999984
No 5
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=1.3e-31 Score=260.36 Aligned_cols=230 Identities=14% Similarity=0.121 Sum_probs=165.0
Q ss_pred EEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCc-EEEEec--CCC-eeecCEEEEcCChhhHHHhhccccccc
Q psy12489 107 YVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQ-IEVTSK--EGK-KGIFDIVVLSMPAPQVTDLFNRSEMMH 182 (365)
Q Consensus 107 ~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~-~~v~~~--~g~-~~~~d~vV~a~p~~~~~~ll~~~~~~~ 182 (365)
+...+||++|++.|++.++..+|++|++|++|++.+ ++ |.|++. +|+ ++.||+||+|+|++++..++.+.
T Consensus 232 ~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~--~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~---- 305 (496)
T PLN02576 232 GSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKND--DGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPK---- 305 (496)
T ss_pred EeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECC--CCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhccc----
Confidence 556789999999999877535799999999999887 65 766554 453 68999999999999999987642
Q ss_pred cchHHHHHHhhcCCccceeEEEEeccCCCCC-------Ccce--EEecCC---CcEEEeeecCCCCCCCCCCc-eEEEEe
Q psy12489 183 IALTGAAQVLLDVEYSSRYAFGMFFDKQFER-------PFDI--KYFDDN---EIIRYISFDNVKRNRPDEPI-SVCVHT 249 (365)
Q Consensus 183 ~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~-------~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~ 249 (365)
+...++.++.++|.++.++++.|+++.+. ++.+ ...++. ..+.+++..+..|++.+.+. .++.+.
T Consensus 306 --~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~ 383 (496)
T PLN02576 306 --SPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYI 383 (496)
T ss_pred --CHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEE
Confidence 33467888899999999999999886432 2223 222221 13445554455565533233 334444
Q ss_pred ChhhhhhhcCCCCchhhHHHHHHHHHHhHCCCC--CCCceEeeecCCCCCCcCCCCCccc--cee--ecCC--CeEEEec
Q psy12489 250 TTQYYNSFLDSETPRNVIERELLDLIRKMFPSW--PLPAETKLQTWKYSQVVDPHRDKLG--FMQ--FSAK--PLVICIG 321 (365)
Q Consensus 250 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~--~~~~~~~~~rw~~a~~~~~~~~~~~--~~~--~~~~--~~l~~aG 321 (365)
.........+.++++ +++.++++|+++++.. ..|....+++|.++.|.+..++... .+. .... ++|++||
T Consensus 384 ~~~~~~~~~~~s~ee--~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG 461 (496)
T PLN02576 384 GGSRNTGIASASEEE--LVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGG 461 (496)
T ss_pred CCCCCcccccCCHHH--HHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEec
Confidence 444444556667788 9999999999999843 2567778899999998876542110 011 1122 5899999
Q ss_pred ccccCCCchhHHHHHHHHHHhhhhcc
Q psy12489 322 DSYVPQSNFDGCIHSAKQTTGASMVG 347 (365)
Q Consensus 322 d~~~~~~~~~gA~~SG~~aA~~l~~~ 347 (365)
||+. +.++++|+.||.++|++|+..
T Consensus 462 ~~~~-g~~i~~ai~sg~~aA~~i~~~ 486 (496)
T PLN02576 462 NYRG-GVALGKCVESGYEAADLVISY 486 (496)
T ss_pred cccC-CccHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999753
No 6
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=2.1e-31 Score=256.16 Aligned_cols=322 Identities=19% Similarity=0.201 Sum_probs=219.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeec-ChhcchhHHHhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITT-TPDFLSNHTDIYQP 80 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~-~~~~~~~~~~~~~~ 80 (365)
++|+|||||+|||+||+.|+++|. +++|+|||+++++|||+.|.... +..+|+|++++.. ++... +++++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~--~~~V~vlEa~~~~GGr~~t~~~~---g~~~d~G~~~~~~~~~~~~----~l~~~ 71 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGP--DADITLLEASDRLGGKIQTVRKD---GFPIELGPESFLARKPSAP----ALVKE 71 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCC--CCCEEEEEcCCCCcceEEEEeeC---CeEEecChHHhcCCcHHHH----HHHHH
Confidence 479999999999999999999863 27899999999999999998764 5789999876543 22211 11111
Q ss_pred hhh----------------cCc-------------------------------------------------ccccccc-c
Q psy12489 81 LLD----------------EKL-------------------------------------------------LEPFTAN-I 94 (365)
Q Consensus 81 l~~----------------~~~-------------------------------------------------~~~~~~~-~ 94 (365)
+.- .|. +.+|... +
T Consensus 72 lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~ 151 (451)
T PRK11883 72 LGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRRRF 151 (451)
T ss_pred cCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHHhc
Confidence 100 000 0000000 0
Q ss_pred ---------c----c--------cccc-----------------------------CCCcceEEcCCChHHHHHHHHhhC
Q psy12489 95 ---------I----G--------YKSR-----------------------------KKNVTHYVTPQGSSSIVKYFLNKS 124 (365)
Q Consensus 95 ---------~----~--------~~~~-----------------------------~~~~~~~~~~~g~~~l~~~l~~~~ 124 (365)
. + +... ......+...+|++++++.|++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l 231 (451)
T PRK11883 152 GDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKL 231 (451)
T ss_pred cHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhC
Confidence 0 0 0000 001123467889999999999987
Q ss_pred CCc-eEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEE
Q psy12489 125 NID-EICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAF 203 (365)
Q Consensus 125 g~~-~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v 203 (365)
+ . +|+++++|++|+.++ ++|.|.+.+|+++.||+||+|+|++++.+++.+ + .....+++++|.++.++
T Consensus 232 ~-~~~i~~~~~V~~i~~~~--~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~----~----~~~~~~~~~~~~~~~~v 300 (451)
T PRK11883 232 P-AGTIHKGTPVTKIDKSG--DGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVA----P----PAFALFKTIPSTSVATV 300 (451)
T ss_pred c-CCeEEeCCEEEEEEEcC--CeEEEEECCCCEEEcCEEEECCCHHHHHHhccC----h----hHHHHHhCCCCCceEEE
Confidence 6 5 899999999999888 789888888988999999999999988887543 1 23567788999999999
Q ss_pred EEeccCCCC--CCcceEEecCC--CcEEEeeecCCC-CCCCCCCceEEEEeChhhhhh-hcCCCCchhhHHHHHHHHHHh
Q psy12489 204 GMFFDKQFE--RPFDIKYFDDN--EIIRYISFDNVK-RNRPDEPISVCVHTTTQYYNS-FLDSETPRNVIERELLDLIRK 277 (365)
Q Consensus 204 ~l~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~l~~ 277 (365)
++.|+++++ .+..+++++.+ .++..+..++.+ +...+.+..++......|... ..+.++++ +++.++++|++
T Consensus 301 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~ 378 (451)
T PRK11883 301 ALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEE--LVAFVLADLSK 378 (451)
T ss_pred EEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHH--HHHHHHHHHHH
Confidence 999998742 23345555422 234444333333 333333445555444444322 34456677 99999999999
Q ss_pred HCCCCCCCceEeeecCCCCCCcCCCCCcc--ccee--ecCCCeEEEecccccCCCchhHHHHHHHHHHhhhhc
Q psy12489 278 MFPSWPLPAETKLQTWKYSQVVDPHRDKL--GFMQ--FSAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMV 346 (365)
Q Consensus 278 ~~~~~~~~~~~~~~rw~~a~~~~~~~~~~--~~~~--~~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~ 346 (365)
+++....+....+++|.++.|....+... ..+. ....++|++||||+. ++++++|+.||+++|++|+.
T Consensus 379 ~~g~~~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~-g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 379 VMGITGDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFE-GVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred HhCCCCCceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccC-CccHHHHHHHHHHHHHHHHh
Confidence 99754567788899999998876543211 0111 111358999999998 88999999999999999874
No 7
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-31 Score=241.72 Aligned_cols=320 Identities=16% Similarity=0.215 Sum_probs=221.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChh-cchhHHHhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPD-FLSNHTDIYQP 80 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~-~~~~~~~~~~~ 80 (365)
.||+|||||++||++|++|++.| ++|+|+|+++++|||+.+.+.. +-+.|.|.+++.+..+ +. .++++
T Consensus 8 ~~viivGaGlaGL~AA~eL~kaG----~~v~ilEar~r~GGR~~t~r~~---~~~~d~gG~~i~p~~~~~l----~~~k~ 76 (450)
T COG1231 8 ADVIIVGAGLAGLSAAYELKKAG----YQVQILEARDRVGGRSLTARAG---GEYTDLGGQYINPTHDALL----AYAKE 76 (450)
T ss_pred CcEEEECCchHHHHHHHHHhhcC----cEEEEEeccCCcCceeEEEecc---ceeeccCCcccCccchhhh----hhHHh
Confidence 48999999999999999999998 9999999999999999888762 3567777666544110 00 00000
Q ss_pred h-------hh--------------------------------------------c-----------Ccccccc----ccc
Q psy12489 81 L-------LD--------------------------------------------E-----------KLLEPFT----ANI 94 (365)
Q Consensus 81 l-------~~--------------------------------------------~-----------~~~~~~~----~~~ 94 (365)
+ .. . .....|. ..+
T Consensus 77 ~gv~~~~fi~~g~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W~~~~~~~~ 156 (450)
T COG1231 77 FGVPLEPFIRDGDNVIGYVGSSKSTPKRSLTAAADVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAWKTSSLRGL 156 (450)
T ss_pred cCCCCCceeccCcccccccccccccchhccchhhhhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhhhhcccccc
Confidence 0 00 0 0012341 000
Q ss_pred c---------c-cc-------c----------------cCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeec
Q psy12489 95 I---------G-YK-------S----------------RKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKT 141 (365)
Q Consensus 95 ~---------~-~~-------~----------------~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~ 141 (365)
. + .. . .+.....+...+||+.+.++++++++ ..|.++++|.+|++.
T Consensus 157 ~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql~-~~I~~~~~V~rI~q~ 235 (450)
T COG1231 157 SRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQLG-TRILLNEPVRRIDQD 235 (450)
T ss_pred ccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHhh-ceEEecCceeeEEEc
Confidence 0 0 00 0 01123344455999999999999999 999999999999999
Q ss_pred CCCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEEEEeccCCCCC--C-cceE
Q psy12489 142 DSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFER--P-FDIK 218 (365)
Q Consensus 142 ~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~--~-~~~~ 218 (365)
+ ++|+|++.+..+..+|.||+|+|+.. +..+.|.|.++..+++++..++|.++.++.+.|++++|. . +.+.
T Consensus 236 ~--~gV~Vt~~~~~~~~ad~~i~tiPl~~----l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~ 309 (450)
T COG1231 236 G--DGVTVTADDVGQYVADYVLVTIPLAI----LGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGE 309 (450)
T ss_pred C--CeEEEEeCCcceEEecEEEEecCHHH----HhhcccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCce
Confidence 9 99999999866899999999999754 467888898999999999999999999999999999874 3 6666
Q ss_pred EecCCCcEEEeeecCCCCCCCCCCceEEEEeChhhhh---hhcCCCCchhhHHHHHHHHHHhHCCC-C-CCCceEeeecC
Q psy12489 219 YFDDNEIIRYISFDNVKRNRPDEPISVCVHTTTQYYN---SFLDSETPRNVIERELLDLIRKMFPS-W-PLPAETKLQTW 293 (365)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~~~~~~~l~~~~~~-~-~~~~~~~~~rw 293 (365)
.+.|. .+.++++++. +... +. .++..+..+.. ..-..++++ .++.++..+.++||. . .+......++|
T Consensus 310 ~~tD~-~~~~i~~~s~-~~~~--G~-gVl~g~~~~g~~A~~~~~~~~~~--r~~~vl~~l~~~~g~~a~~~f~~~~~~~W 382 (450)
T COG1231 310 SLTDL-GLGFISYPSA-PFAD--GP-GVLLGSYAFGDDALVIDALPEAE--RRQKVLARLAKLFGDEAADPFDYGASVDW 382 (450)
T ss_pred EeecC-CcceEecCcc-ccCC--Cc-eEEEeeeeccccceeEecCCHHH--HHHHHHHhHhhhCChhhccccccceeeec
Confidence 66665 4778877665 3221 32 23333222222 122335566 999999999999994 2 23444467777
Q ss_pred CCCCCcCC------CCCcccce--eecCCCeEEEec-cccc-CCCchhHHHHHHHHHHhhhhc
Q psy12489 294 KYSQVVDP------HRDKLGFM--QFSAKPLVICIG-DSYV-PQSNFDGCIHSAKQTTGASMV 346 (365)
Q Consensus 294 ~~a~~~~~------~~~~~~~~--~~~~~~~l~~aG-d~~~-~~~~~~gA~~SG~~aA~~l~~ 346 (365)
.......+ .+....+. ...+.++|+||| ++.. .+|++|||++||++||.+|..
T Consensus 383 ~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~ 445 (450)
T COG1231 383 SKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHA 445 (450)
T ss_pred ccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHH
Confidence 63222111 11111111 124568999999 7765 469999999999999999874
No 8
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=3.9e-31 Score=260.29 Aligned_cols=328 Identities=14% Similarity=0.185 Sum_probs=221.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCC-Ceeeecccceeec---Chhc--chh--
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVP-NCKVDLGLQYITT---TPDF--LSN-- 73 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~-~~~~d~g~~~~~~---~~~~--~~~-- 73 (365)
++|+|||||++||++|+.|+++| ++|+|||+++++|||+.|....... ...+|+|++|++. +|-. .+.
T Consensus 161 ~~v~viGaG~aGl~aA~~l~~~g----~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lg 236 (738)
T PLN02529 161 GSVIIVGAGLAGLAAARQLLSFG----FKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLS 236 (738)
T ss_pred CCEEEECcCHHHHHHHHHHHHcC----CcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhC
Confidence 58999999999999999999998 9999999999999999998764211 2579999999875 2110 000
Q ss_pred -------------------------------HHHhhhhhhh-----cCc-----cccccc------------c-------
Q psy12489 74 -------------------------------HTDIYQPLLD-----EKL-----LEPFTA------------N------- 93 (365)
Q Consensus 74 -------------------------------~~~~~~~l~~-----~~~-----~~~~~~------------~------- 93 (365)
++++++.+.. .+. +..|.. .
T Consensus 237 l~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~ 316 (738)
T PLN02529 237 IPLHKVRDNCPLYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDISLGSVLERLRQLYGVARSTEERQLLDW 316 (738)
T ss_pred CCccccCCCceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHH
Confidence 0011111000 000 000000 0
Q ss_pred ----cc----c----cc--cc------CCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecC
Q psy12489 94 ----II----G----YK--SR------KKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKE 153 (365)
Q Consensus 94 ----~~----~----~~--~~------~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~ 153 (365)
.+ + +. .+ ......+...+|+++++++|++ + ..|++|++|++|+.++ ++|.|++.
T Consensus 317 ~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i~GG~~~Li~aLA~--~-L~IrLnt~V~~I~~~~--dGVtV~t~- 390 (738)
T PLN02529 317 HLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCE--G-VPIFYGKTVDTIKYGN--DGVEVIAG- 390 (738)
T ss_pred HHHHhceecCCChHHhhhhHhhhccccccCCceEEECCcHHHHHHHHHh--c-CCEEcCCceeEEEEcC--CeEEEEEC-
Confidence 00 0 00 00 0122345678899999999998 4 6799999999999988 88988764
Q ss_pred CCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEEEEeccCCCCCC---cceEEecC--CCcEEE
Q psy12489 154 GKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERP---FDIKYFDD--NEIIRY 228 (365)
Q Consensus 154 g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~---~~~~~~~~--~~~~~~ 228 (365)
++++.||+||+|+|++++.+. .+.|.|+||+.++++++++.|.+..|+++.|++++|.. +.+..... .....+
T Consensus 391 ~~~~~AD~VIVTVPlgVLk~~--~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~ 468 (738)
T PLN02529 391 SQVFQADMVLCTVPLGVLKKR--TIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFF 468 (738)
T ss_pred CEEEEcCEEEECCCHHHHHhc--cccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEE
Confidence 457899999999999887652 56788999999999999999999999999999997742 33433221 111222
Q ss_pred eeecCCCCCCCCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCCC----CCCCceEeeecCC--------CC
Q psy12489 229 ISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPS----WPLPAETKLQTWK--------YS 296 (365)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~----~~~~~~~~~~rw~--------~a 296 (365)
++.+.... .+++.++.+....++......++++ +++.+++.|+++|+. .+.|....+++|. |+
T Consensus 469 ~~~~~~~~---~ggpvLvafv~G~~A~~le~lsdee--ii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS 543 (738)
T PLN02529 469 LFYGYHTV---SGGPALVALVAGEAAQRFENTDPST--LLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYS 543 (738)
T ss_pred EEecCCCC---CCCCEEEEEECchhhHHHhcCCHHH--HHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcc
Confidence 22222211 1234666676666666555567777 999999999999863 2367778889998 34
Q ss_pred CCcCCCCC-cccceeecCCCeEEEecccccC--CCchhHHHHHHHHHHhhhhc
Q psy12489 297 QVVDPHRD-KLGFMQFSAKPLVICIGDSYVP--QSNFDGCIHSAKQTTGASMV 346 (365)
Q Consensus 297 ~~~~~~~~-~~~~~~~~~~~~l~~aGd~~~~--~~~~~gA~~SG~~aA~~l~~ 346 (365)
.+..+... ....+..+..++||||||++.+ .++||||+.||++||++|+.
T Consensus 544 ~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~ 596 (738)
T PLN02529 544 HVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILH 596 (738)
T ss_pred cCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHH
Confidence 33221100 0112223334789999999883 37999999999999999985
No 9
>PLN02676 polyamine oxidase
Probab=100.00 E-value=1.3e-30 Score=250.14 Aligned_cols=328 Identities=14% Similarity=0.181 Sum_probs=215.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCce-eEEEEecCCCCCccceeecCCCCCCeeeecccceeec-----ChhcchhHH
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLI-HITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITT-----TPDFLSNHT 75 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~-~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~-----~~~~~~~~~ 75 (365)
.||+|||||++||++|+.|+++| . +|+|||+++++|||+.+... .+..+|.|++|+.. .+...+...
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~g----~~~v~vlE~~~~~GG~~~~~~~---~g~~~d~g~~~~~~~~~~~~~~~~~l~~ 99 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEAG----IEDILILEATDRIGGRMRKANF---AGVSVELGANWVEGVGGPESNPIWELAN 99 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHcC----CCcEEEecCCCCCCCcceeecC---CCeEEecCCEEEEcccCcccChHHHHHH
Confidence 58999999999999999999998 7 69999999999999998776 35789999998852 111110000
Q ss_pred H-----------------------------------hhh-------hhhhc-------Cc-------ccccccc------
Q psy12489 76 D-----------------------------------IYQ-------PLLDE-------KL-------LEPFTAN------ 93 (365)
Q Consensus 76 ~-----------------------------------~~~-------~l~~~-------~~-------~~~~~~~------ 93 (365)
+ .+. .+... .. +..+...
T Consensus 100 ~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 179 (487)
T PLN02676 100 KLKLRTFYSDFDNLSSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQRLFGQVPKTPLEMV 179 (487)
T ss_pred hcCCceeecCccccceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHHHHHhhCCCCHHHHH
Confidence 0 000 00000 00 0000000
Q ss_pred -------c-cccc----c-c---------CCCcceEEc--CCChHHHHHHHHhhCC--------CceEEEeeeeEEeeec
Q psy12489 94 -------I-IGYK----S-R---------KKNVTHYVT--PQGSSSIVKYFLNKSN--------IDEICYNTFLETMAKT 141 (365)
Q Consensus 94 -------~-~~~~----~-~---------~~~~~~~~~--~~g~~~l~~~l~~~~g--------~~~i~~~~~V~~i~~~ 141 (365)
+ .+.. + . ..+...+.. .+|++++++.|++.+. ..+|++|++|++|+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~ 259 (487)
T PLN02676 180 IDYYNYDYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS 259 (487)
T ss_pred HHHHhccceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc
Confidence 0 0000 0 0 001112332 5799999999998651 1579999999999998
Q ss_pred CCCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEEEEeccCCCCCC-c--ceE
Q psy12489 142 DSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERP-F--DIK 218 (365)
Q Consensus 142 ~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~-~--~~~ 218 (365)
+ +++.|++.+|+++.||+||+|+|+..+.+ ..+.|.|+||...+++++++++....|+++.|++++|.. . ...
T Consensus 260 ~--~gV~V~~~~G~~~~a~~VIvtvPl~vLk~--~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~ 335 (487)
T PLN02676 260 K--NGVTVKTEDGSVYRAKYVIVSVSLGVLQS--DLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFF 335 (487)
T ss_pred C--CcEEEEECCCCEEEeCEEEEccChHHhcc--CceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceee
Confidence 8 88999999998999999999999876543 237788999999999999999999999999999998853 1 111
Q ss_pred EecCCC-cE--EEeeecCCCCCCCCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCCC-CCCCceEeeecCC
Q psy12489 219 YFDDNE-II--RYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPS-WPLPAETKLQTWK 294 (365)
Q Consensus 219 ~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~-~~~~~~~~~~rw~ 294 (365)
...+.. .. .|...+.. .++...++.+.....+...-..++++ ..+.+++.|+++|+. ...|.....++|.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~g~~a~~~~~~s~e~--~~~~vl~~L~~~~g~~~~~p~~~~~~~W~ 409 (487)
T PLN02676 336 LYAHERRGYYPFWQHLENE----YPGSNVLFVTVTDEESRRIEQQPDSE--TKAEIMEVLRKMFGPNIPEATDILVPRWW 409 (487)
T ss_pred eeeccccccchhhhhcccC----CCCCCEEEEEechHHHHHHHhCCHHH--HHHHHHHHHHHHhCCCCCCcceEEecccC
Confidence 111110 00 11111111 11123455555444444444456777 899999999999974 3567777788886
Q ss_pred ---CCCCcCC---CCCcc---cceeecCCCeEEEeccccc--CCCchhHHHHHHHHHHhhhhcc
Q psy12489 295 ---YSQVVDP---HRDKL---GFMQFSAKPLVICIGDSYV--PQSNFDGCIHSAKQTTGASMVG 347 (365)
Q Consensus 295 ---~a~~~~~---~~~~~---~~~~~~~~~~l~~aGd~~~--~~~~~~gA~~SG~~aA~~l~~~ 347 (365)
|+...+. .+... ..+. .+.++|||||+++. ..|+||||+.||++||++|+..
T Consensus 410 ~dp~s~Gsys~~~pG~~~~~~~~L~-~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~ 472 (487)
T PLN02676 410 SNRFFKGSYSNWPIGVSRYEFDQIR-APVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLEC 472 (487)
T ss_pred CCCCCCcccCCCCCCCChhHHHHHh-CCCCceEEeccccccccccchHHHHHHHHHHHHHHHHH
Confidence 3322211 11000 1122 34578999999988 3589999999999999999853
No 10
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.98 E-value=2e-30 Score=256.23 Aligned_cols=328 Identities=16% Similarity=0.189 Sum_probs=220.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCC-CCeeeecccceeecC---hhc--ch---
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVV-PNCKVDLGLQYITTT---PDF--LS--- 72 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~-~~~~~d~g~~~~~~~---~~~--~~--- 72 (365)
++|+|||||++||++|+.|++.| ++|+|+|+++++|||+.+....+. -...+|+|++|++.. +.. .+
T Consensus 239 ~~v~IiGaG~aGl~aA~~L~~~g----~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lg 314 (808)
T PLN02328 239 ANVVVVGAGLAGLVAARQLLSMG----FKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLG 314 (808)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC----CcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcC
Confidence 58999999999999999999998 999999999999999998876421 124688898887651 110 00
Q ss_pred --------------------------hHHHhhhhhhh-------------cCc---cccccc------cc----------
Q psy12489 73 --------------------------NHTDIYQPLLD-------------EKL---LEPFTA------NI---------- 94 (365)
Q Consensus 73 --------------------------~~~~~~~~l~~-------------~~~---~~~~~~------~~---------- 94 (365)
.+...+..+.. ... +..|.. ..
T Consensus 315 l~~~~~~~~~~~~~~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll 394 (808)
T PLN02328 315 LPLHKVRDICPLYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVYKVAEDPQERMLL 394 (808)
T ss_pred CceEecCCCceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhcccccCcCHHHHHHHHhhhhccCCCHHHHHHH
Confidence 00000001000 000 000000 00
Q ss_pred ----------c-----ccc--ccC------CCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEe
Q psy12489 95 ----------I-----GYK--SRK------KNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTS 151 (365)
Q Consensus 95 ----------~-----~~~--~~~------~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~ 151 (365)
. .+. .+. .....+...+|+.+++++|++. ..|++|++|++|+..+ ++|.+ +
T Consensus 395 ~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~---L~I~ln~~V~~I~~~~--dgV~V-~ 468 (808)
T PLN02328 395 NWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKD---LPIFYERTVESIRYGV--DGVIV-Y 468 (808)
T ss_pred HHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEECCcHHHHHHHHHhh---CCcccCCeeEEEEEcC--CeEEE-E
Confidence 0 000 000 1123556679999999999986 4599999999999988 78877 4
Q ss_pred cCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEEEEeccCCCCCC---cceEEecCCC--cE
Q psy12489 152 KEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERP---FDIKYFDDNE--II 226 (365)
Q Consensus 152 ~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~---~~~~~~~~~~--~~ 226 (365)
.+|+++.||+||+|+|+..+.+ ..+.|.|+||..+.++++++.|.++.|+++.|++++|.. ..+....+.. ..
T Consensus 469 ~~G~~~~AD~VIvTvPl~vLk~--~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~ 546 (808)
T PLN02328 469 AGGQEFHGDMVLCTVPLGVLKK--GSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGE 546 (808)
T ss_pred eCCeEEEcCEEEECCCHHHHhh--cccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCce
Confidence 5677899999999999887654 256777899999999999999999999999999997742 2333332211 11
Q ss_pred EEeeecCCCCCCCCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCCC----CCCCceEeeecCC--------
Q psy12489 227 RYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPS----WPLPAETKLQTWK-------- 294 (365)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~----~~~~~~~~~~rw~-------- 294 (365)
.+++.+.... .++..++.+....++......++++ +++.+++.|+++|+. .+.|....+++|.
T Consensus 547 ~~lf~s~s~~---~G~~vLvafv~G~~A~~~e~lsdeE--~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GS 621 (808)
T PLN02328 547 FFLFYSYSSV---SGGPLLIALVAGDAAVKFETLSPVE--SVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGS 621 (808)
T ss_pred EEEEecCCCC---CCCcEEEEEecChhhHHHhcCCHHH--HHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCC
Confidence 1222221111 1234667777777777666667777 999999999999863 2467788899998
Q ss_pred CCCCcCCCCC-cccceeec-CCCeEEEeccccc--CCCchhHHHHHHHHHHhhhhc
Q psy12489 295 YSQVVDPHRD-KLGFMQFS-AKPLVICIGDSYV--PQSNFDGCIHSAKQTTGASMV 346 (365)
Q Consensus 295 ~a~~~~~~~~-~~~~~~~~-~~~~l~~aGd~~~--~~~~~~gA~~SG~~aA~~l~~ 346 (365)
|+.+..+... ....+..+ ..++||||||++. ..|+||||+.||+++|++|+.
T Consensus 622 YS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~ 677 (808)
T PLN02328 622 YSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILR 677 (808)
T ss_pred CCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHH
Confidence 3332221100 01122222 2468999999988 247999999999999999986
No 11
>PLN02568 polyamine oxidase
Probab=99.98 E-value=7.6e-30 Score=246.55 Aligned_cols=237 Identities=8% Similarity=0.005 Sum_probs=163.3
Q ss_pred eEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhhHHHhh--cccccccc
Q psy12489 106 HYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLF--NRSEMMHI 183 (365)
Q Consensus 106 ~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll--~~~~~~~~ 183 (365)
.+...+|+++|++.|++.++..+|++|++|++|+..+ +++.|++.+|+++.||+||+|+|+..+.+-+ ..+.|.|+
T Consensus 234 ~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~--~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~ 311 (539)
T PLN02568 234 EITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQD--EPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPP 311 (539)
T ss_pred eEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeC--CeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCC
Confidence 4566789999999999987535799999999999988 8899999999889999999999988776422 13568899
Q ss_pred chHHHHHHhhcCCccceeEEEEeccCCCCCC------cc--eEEecCCC------cEEEeeec--CCCCCCCCCCceEEE
Q psy12489 184 ALTGAAQVLLDVEYSSRYAFGMFFDKQFERP------FD--IKYFDDNE------IIRYISFD--NVKRNRPDEPISVCV 247 (365)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~------~~--~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~ 247 (365)
||+.++++++.+.|....|+++.|++++|.. +. .++..+.. ...+.... +..+.. ...+.++.
T Consensus 312 LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~~ 390 (539)
T PLN02568 312 LPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIH-KNSSVLLS 390 (539)
T ss_pred CCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccC-CCCCEEEE
Confidence 9999999999999999999999999997531 11 11111110 00111000 000100 11245666
Q ss_pred EeChhhhhhhcCCCCchhhHHHHHHHHHHhHCCCC-----------------------CCCceEeeecCC---CCCCcCC
Q psy12489 248 HTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSW-----------------------PLPAETKLQTWK---YSQVVDP 301 (365)
Q Consensus 248 ~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~-----------------------~~~~~~~~~rw~---~a~~~~~ 301 (365)
+.....+......++++ +++.+++.|+++|+.. ..|....+++|. |++..+.
T Consensus 391 ~~~G~~A~~~e~l~~~~--~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs 468 (539)
T PLN02568 391 WFAGKEALELEKLSDEE--IIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYS 468 (539)
T ss_pred EeccHHHHHHHcCCHHH--HHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccC
Confidence 66665565555567777 9999999999999732 246677788996 3322211
Q ss_pred C---CCcc---cceeec------------CCCeEEEeccccc--CCCchhHHHHHHHHHHhhhhcc
Q psy12489 302 H---RDKL---GFMQFS------------AKPLVICIGDSYV--PQSNFDGCIHSAKQTTGASMVG 347 (365)
Q Consensus 302 ~---~~~~---~~~~~~------------~~~~l~~aGd~~~--~~~~~~gA~~SG~~aA~~l~~~ 347 (365)
+ +... ..+..+ +.++|||||++++ ..++|+||+.||+++|++|+..
T Consensus 469 ~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~ 534 (539)
T PLN02568 469 YVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQH 534 (539)
T ss_pred CCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHH
Confidence 1 1000 122211 1237999999988 2489999999999999999864
No 12
>PLN03000 amine oxidase
Probab=99.98 E-value=6.3e-30 Score=252.55 Aligned_cols=328 Identities=14% Similarity=0.186 Sum_probs=222.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCC-CCCeeeecccceeecChh-cc----hhH-
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNV-VPNCKVDLGLQYITTTPD-FL----SNH- 74 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~-~~~~~~d~g~~~~~~~~~-~~----~~~- 74 (365)
.+|+|||||++||++|+.|++.| ++|+|||+++++|||+.|..... ..+..+|+|++|++.... .. +++
T Consensus 185 ~~VvIIGaG~aGL~aA~~L~~~G----~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlg 260 (881)
T PLN03000 185 SSVVIVGAGLSGLAAARQLMRFG----FKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLG 260 (881)
T ss_pred CCEEEECccHHHHHHHHHHHHCC----CcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcC
Confidence 58999999999999999999998 99999999999999999988643 125779999999876211 00 000
Q ss_pred --------------------------------HHhhhhhh------hc-C----------cccccccc------------
Q psy12489 75 --------------------------------TDIYQPLL------DE-K----------LLEPFTAN------------ 93 (365)
Q Consensus 75 --------------------------------~~~~~~l~------~~-~----------~~~~~~~~------------ 93 (365)
..+++... .. . ....|...
T Consensus 261 l~l~~~~~~~~ly~~~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w 340 (881)
T PLN03000 261 SSLYKVRDKCPLYRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDVSMDVSLGAALETFRQVSGNDVATEEMGLFNW 340 (881)
T ss_pred CceeecCCCCeEEEeCCcCCchhhhhhHHHHHHHHHHHHHHHHHHhcccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 00000000 00 0 00000000
Q ss_pred ------c--cc----cc--ccC------CCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecC
Q psy12489 94 ------I--IG----YK--SRK------KNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKE 153 (365)
Q Consensus 94 ------~--~~----~~--~~~------~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~ 153 (365)
+ .. +. .+. .....+...+|+++++++|++. ..|+++++|++|++++ ++|.|++.+
T Consensus 341 ~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~---L~I~Ln~~Vt~I~~~~--dgV~V~~~~ 415 (881)
T PLN03000 341 HLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAEN---VPILYEKTVQTIRYGS--NGVKVIAGN 415 (881)
T ss_pred HHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHHhh---CCcccCCcEEEEEECC--CeEEEEECC
Confidence 0 00 00 000 1223456679999999999986 4599999999999988 889888754
Q ss_pred CCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEEEEeccCCCCCC---cceEEecCC--CcEEE
Q psy12489 154 GKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERP---FDIKYFDDN--EIIRY 228 (365)
Q Consensus 154 g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~---~~~~~~~~~--~~~~~ 228 (365)
+++.||+||+|+|+..+.+ ..+.|.|+||+.++++++++.|....|+++.|++++|.. +.+....+. ....+
T Consensus 416 -~~~~AD~VIvTVPlgVLk~--~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~ 492 (881)
T PLN03000 416 -QVYEGDMVLCTVPLGVLKN--GSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFF 492 (881)
T ss_pred -cEEEeceEEEcCCHHHHhh--CceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeE
Confidence 4799999999999877653 367888999999999999999999999999999998742 334443221 12223
Q ss_pred eeecCCCCCCCCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCCC----CCCCceEeeecCC---CCCCcCC
Q psy12489 229 ISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPS----WPLPAETKLQTWK---YSQVVDP 301 (365)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~----~~~~~~~~~~rw~---~a~~~~~ 301 (365)
++.+.... .+...++.+.....+......++++ +++.++++|+++|+. .++|....+++|. |+.-.+.
T Consensus 493 ~f~s~sp~---~G~pVLvafv~Gd~A~~le~lSdeE--~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS 567 (881)
T PLN03000 493 LFYSYAPV---AGGPLLIALVAGEAAHKFETMPPTD--AVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYS 567 (881)
T ss_pred EEeCCCCC---CCCcEEEEEecCchhHHhhcCCHHH--HHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCcccc
Confidence 33332221 1234565566555555555567777 999999999999962 2467788889997 3332221
Q ss_pred C---CCcc---cceeec-CCCeEEEeccccc--CCCchhHHHHHHHHHHhhhhc
Q psy12489 302 H---RDKL---GFMQFS-AKPLVICIGDSYV--PQSNFDGCIHSAKQTTGASMV 346 (365)
Q Consensus 302 ~---~~~~---~~~~~~-~~~~l~~aGd~~~--~~~~~~gA~~SG~~aA~~l~~ 346 (365)
. +... ..+..+ ..++|||||+++. ..++||||++||++||++|+.
T Consensus 568 ~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~ 621 (881)
T PLN03000 568 NVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQ 621 (881)
T ss_pred CCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHH
Confidence 1 1000 112222 2468999999987 348999999999999999985
No 13
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.97 E-value=4.9e-30 Score=238.19 Aligned_cols=321 Identities=17% Similarity=0.205 Sum_probs=231.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecC-hhcchhHHHhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTT-PDFLSNHTDIYQP 80 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~-~~~~~~~~~~~~~ 80 (365)
++|+|||||+|||++||+|+|++|+ .+++|||+++++||.+.|...+ ++.+|.|.+.|... ++.. +++++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~--~~i~lfE~~~r~GG~l~T~~~~---G~~~e~G~~~f~~~~~~~l----~li~e 71 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPD--VEVTLFEADDRVGGLLRTVKID---GFLFERGPHHFLARKEEIL----DLIKE 71 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCC--CcEEEEecCCCCCceEEEEeeC---CEEEeechhheecchHHHH----HHHHH
Confidence 4699999999999999999999887 9999999999999999999774 68999999877664 3222 33333
Q ss_pred hhhc----------------Ccccc--------------------------------cccc------------c------
Q psy12489 81 LLDE----------------KLLEP--------------------------------FTAN------------I------ 94 (365)
Q Consensus 81 l~~~----------------~~~~~--------------------------------~~~~------------~------ 94 (365)
|.-. |.+.+ |... |
T Consensus 72 LGled~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~r~~fG~ev~~ 151 (444)
T COG1232 72 LGLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARALQEFIRPKSWEPKQDISVGEFIRRRFGEEVVE 151 (444)
T ss_pred hCcHHhhccCCcccceEeeCCcEEECCccceeecCCccccchhHHHHHHHhhhcccCCCCCCCcCHHHHHHHHHhHHHHH
Confidence 2110 00000 0000 0
Q ss_pred -------cc--------ccc----------------------c--CC-----CcceEEcCCChHHHHHHHHhhCCCceEE
Q psy12489 95 -------IG--------YKS----------------------R--KK-----NVTHYVTPQGSSSIVKYFLNKSNIDEIC 130 (365)
Q Consensus 95 -------~~--------~~~----------------------~--~~-----~~~~~~~~~g~~~l~~~l~~~~g~~~i~ 130 (365)
.+ +.. + .. ........+|+++|++++++++. .+|+
T Consensus 152 ~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~-~~i~ 230 (444)
T COG1232 152 RFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLE-AKIR 230 (444)
T ss_pred HHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhh-hcee
Confidence 00 000 0 00 11234457899999999999988 8899
Q ss_pred EeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEEEEeccCC
Q psy12489 131 YNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQ 210 (365)
Q Consensus 131 ~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~ 210 (365)
++++|+.|.++. .++.+.+.+|..+.||.||+|+|++.+..+|++.. ....+.++.+.+..++.+.++++
T Consensus 231 ~~~~V~~i~~~~--~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~--------~~~~~~~~~~~s~~~vv~~~~~~ 300 (444)
T COG1232 231 TGTEVTKIDKKG--AGKTIVDVGGEKITADGVISTAPLPELARLLGDEA--------VSKAAKELQYTSVVTVVVGLDEK 300 (444)
T ss_pred ecceeeEEEEcC--CccEEEEcCCceEEcceEEEcCCHHHHHHHcCCcc--------hhhhhhhccccceEEEEEEeccc
Confidence 999999999987 77888888888899999999999999999998732 24566788898999999999885
Q ss_pred ---CCCCcceEEecCCCc-EEEeeecCCC-CCCCCCCc-eEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCCCCCC
Q psy12489 211 ---FERPFDIKYFDDNEI-IRYISFDNVK-RNRPDEPI-SVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPL 284 (365)
Q Consensus 211 ---~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~ 284 (365)
......|++++++.+ +..+..++.+ |...+.+. .+.+.....+.......+||+ +++.++++|.++++...+
T Consensus 301 ~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee--~~~~~l~~L~~~~~~~~~ 378 (444)
T COG1232 301 DNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEE--LVAAVLDDLKKLGGINGD 378 (444)
T ss_pred cccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHH--HHHHHHHHHHHHcCcCcc
Confidence 223345777777554 4444444433 44433243 334444444444445567888 999999999999987777
Q ss_pred CceEeeecCCCCCCcCCCCCcc--cceee--c-CCCeEEEecccccCCCchhHHHHHHHHHHhhhh
Q psy12489 285 PAETKLQTWKYSQVVDPHRDKL--GFMQF--S-AKPLVICIGDSYVPQSNFDGCIHSAKQTTGASM 345 (365)
Q Consensus 285 ~~~~~~~rw~~a~~~~~~~~~~--~~~~~--~-~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~ 345 (365)
|.+..+.||.++.|++..++.. ..++. . ..+++..+|-|.. +-++.+|+.+|..||++|+
T Consensus 379 ~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~-g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 379 PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGE-GVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCC-CCCchHHHHHHHHHHHHhh
Confidence 8889999999999998754211 11111 1 2278999999998 6899999999999999886
No 14
>KOG0029|consensus
Probab=99.97 E-value=3.2e-29 Score=238.18 Aligned_cols=323 Identities=16% Similarity=0.148 Sum_probs=217.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeec-ChhcchhHHHhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITT-TPDFLSNHTDIYQP 80 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~-~~~~~~~~~~~~~~ 80 (365)
++|+|||||+|||+||++|++.| ++|+|||+++++|||+.|.+...+ ..+|+|+++++. +.+-. ..+.++
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G----~~V~VLEARdRvGGRI~t~~~~~~--~~vd~Gas~~~g~~~npl---~~l~~q 86 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFG----FDVLVLEARDRVGGRIYTFKSEGG--DHVDLGASVLTGVYNNPL---ALLSKQ 86 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcC----CceEEEeccCCcCceeEEEecCCC--CeeecCCceecCcCccHH---HHHHHH
Confidence 58999999999999999999998 999999999999999999987643 369999999987 22111 011111
Q ss_pred hhh--------------cCc---------cccccc-----------------------cc-----------------ccc
Q psy12489 81 LLD--------------EKL---------LEPFTA-----------------------NI-----------------IGY 97 (365)
Q Consensus 81 l~~--------------~~~---------~~~~~~-----------------------~~-----------------~~~ 97 (365)
+.- .+. ...|.. .+ ..+
T Consensus 87 lgl~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (501)
T KOG0029|consen 87 LGLELYKVRDTCPLFNENGGESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSASRLMKTLLEL 166 (501)
T ss_pred hCcccceecccccccccCCcccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHHHHHHHhhHHH
Confidence 110 000 000000 00 000
Q ss_pred c------------------------------cc------CCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeec
Q psy12489 98 K------------------------------SR------KKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKT 141 (365)
Q Consensus 98 ~------------------------------~~------~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~ 141 (365)
. .+ ..........+|+..++..+++ + .+|+++++|.+|+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~--~-l~I~~~~~v~~i~~~ 243 (501)
T KOG0029|consen 167 LLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAE--G-LDIHLNKRVRKIKYG 243 (501)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCC--C-cceeeceeeEEEEEe
Confidence 0 00 0011223456788889998887 6 899999999999998
Q ss_pred CCCCc-EEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEEEEeccCCCCC---Ccce
Q psy12489 142 DSTNQ-IEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFER---PFDI 217 (365)
Q Consensus 142 ~~~~~-~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~---~~~~ 217 (365)
+ ++ +.+++.++..+.+|.||+|+|+..+.. ..+.|+|+||..+..+++++......++++.|++.+|. .+.+
T Consensus 244 ~--~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~--~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg 319 (501)
T KOG0029|consen 244 D--DGAVKVTVETGDGYEADAVVVTVPLGVLKS--GLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFG 319 (501)
T ss_pred c--CCceEEEEECCCeeEeeEEEEEccHHHhcc--CceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEE
Confidence 7 44 455666666699999999999887654 56889999999999999999999999999999999884 2333
Q ss_pred EEecCCCcEEE--eeecCCCCCCCCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCC--CCCCCceEeeecC
Q psy12489 218 KYFDDNEIIRY--ISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFP--SWPLPAETKLQTW 293 (365)
Q Consensus 218 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~--~~~~~~~~~~~rw 293 (365)
... ....... .+++ .++-.. .+.++......-+......++++ +++.++..|+++|+ ....|....+.+|
T Consensus 320 ~~~-~~~~~~~~~~f~~-~~~~~~--~~~l~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~k~f~~~~~~~p~~~~vt~w 393 (501)
T KOG0029|consen 320 IVP-ETSVLRGLFTFYD-CKPVAG--HPVLMSVVVGEAAERVETLSDSE--IVKKAMKLLRKVFGSEEVPDPLDALVTRW 393 (501)
T ss_pred Ecc-ccccccchhhhhh-cCccCC--CCeEEEEehhhhhHHHhcCCHHH--HHHHHHHHHHHHhccCcCCCccceeeeee
Confidence 322 2111112 2222 222211 13455544443344455668888 99999999999999 3456778888899
Q ss_pred CCCC---CcC-----CCCCcc-cceeecCCCeEEEeccccc--CCCchhHHHHHHHHHHhhhhc
Q psy12489 294 KYSQ---VVD-----PHRDKL-GFMQFSAKPLVICIGDSYV--PQSNFDGCIHSAKQTTGASMV 346 (365)
Q Consensus 294 ~~a~---~~~-----~~~~~~-~~~~~~~~~~l~~aGd~~~--~~~~~~gA~~SG~~aA~~l~~ 346 (365)
.-.. -.+ +.+... ..+..+..+++||+|+++. ..++|+||+.||.++|..|+.
T Consensus 394 ~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~ 457 (501)
T KOG0029|consen 394 GTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILD 457 (501)
T ss_pred cccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHH
Confidence 7221 111 110000 1222344446999999987 348999999999999999875
No 15
>PLN02976 amine oxidase
Probab=99.97 E-value=1.1e-28 Score=249.75 Aligned_cols=232 Identities=11% Similarity=0.109 Sum_probs=164.4
Q ss_pred ceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecC--------CCCcEEEEecCCCeeecCEEEEcCChhhHHHhhc
Q psy12489 105 THYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTD--------STNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFN 176 (365)
Q Consensus 105 ~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~--------~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~ 176 (365)
..+...+|+.+|+++|++. ..|++|++|++|++++ ..++|.|++.+|+++.||+||+|+|+..+.. .
T Consensus 927 ~~~rIkGGYqqLIeALAe~---L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKa--g 1001 (1713)
T PLN02976 927 AHCMIKGGYSNVVESLAEG---LDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKA--E 1001 (1713)
T ss_pred ceEEeCCCHHHHHHHHHhh---CCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhh--c
Confidence 3556789999999999985 5699999999998842 1156899999998999999999999877653 2
Q ss_pred cccccccchHHHHHHhhcCCccceeEEEEeccCCCCCC---cceEEecC--CCcEEEeeecCCCCCCCCCCceEEEEeCh
Q psy12489 177 RSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERP---FDIKYFDD--NEIIRYISFDNVKRNRPDEPISVCVHTTT 251 (365)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (365)
.+.|.|+||+....++..+.|....++++.|++++|.. +.+....+ .....+.+++...+. +.+.++.+...
T Consensus 1002 ~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~ps---G~pVLVafv~G 1078 (1713)
T PLN02976 1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTV---GAPVLIALVVG 1078 (1713)
T ss_pred ccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCC---CCCEEEEEecc
Confidence 47888999999999999999999999999999998753 23322211 112223333322221 12355555555
Q ss_pred hhhhhhcCCCCchhhHHHHHHHHHHhHCCCC--CCCceEeeecCC---CCCCcCCC---CCcc---cceeecCCCeEEEe
Q psy12489 252 QYYNSFLDSETPRNVIERELLDLIRKMFPSW--PLPAETKLQTWK---YSQVVDPH---RDKL---GFMQFSAKPLVICI 320 (365)
Q Consensus 252 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~--~~~~~~~~~rw~---~a~~~~~~---~~~~---~~~~~~~~~~l~~a 320 (365)
..+......++++ +++.+++.|+++|+.. +.|....+++|. |+...+.+ +... ..+..+-.++||||
T Consensus 1079 ~aAreiEsLSDEE--~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFA 1156 (1713)
T PLN02976 1079 KAAIDGQSMSSSD--HVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFA 1156 (1713)
T ss_pred HhHHHHhhCCHHH--HHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEE
Confidence 4454444556777 9999999999999842 568888889996 33322211 1000 11222333569999
Q ss_pred ccccc--CCCchhHHHHHHHHHHhhhhc
Q psy12489 321 GDSYV--PQSNFDGCIHSAKQTTGASMV 346 (365)
Q Consensus 321 Gd~~~--~~~~~~gA~~SG~~aA~~l~~ 346 (365)
|+++. ..|+|+||+.||++||++|+.
T Consensus 1157 GEATS~~~pGTVHGAIeSG~RAA~eIL~ 1184 (1713)
T PLN02976 1157 GEATCKEHPDTVGGAMMSGLREAVRIID 1184 (1713)
T ss_pred ehhhhCCCcchHHHHHHHHHHHHHHHHH
Confidence 99887 348999999999999999974
No 16
>PRK07233 hypothetical protein; Provisional
Probab=99.97 E-value=2.7e-28 Score=233.40 Aligned_cols=321 Identities=14% Similarity=0.170 Sum_probs=206.6
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeec-ChhcchhHHHhhhhh
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITT-TPDFLSNHTDIYQPL 81 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~-~~~~~~~~~~~~~~l 81 (365)
+|+|||||++||++|+.|+++| ++|+|||+++++||++.+.... ++.+|.|.+++.. +++.. ++++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G----~~v~vlE~~~~~GG~~~s~~~~---g~~~d~g~~~~~~~~~~~~----~l~~~l 69 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRG----HEVTVFEADDQLGGLAASFEFG---GLPIERFYHHIFKSDEALL----ELLDEL 69 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCC----CcEEEEEeCCCCCCceeeeccC---CcchhhhhhhhccccHHHH----HHHHHc
Confidence 6999999999999999999998 9999999999999999887763 4677877766543 22221 111111
Q ss_pred hh---------------cCccc--------------------------------------------ccccccc-------
Q psy12489 82 LD---------------EKLLE--------------------------------------------PFTANII------- 95 (365)
Q Consensus 82 ~~---------------~~~~~--------------------------------------------~~~~~~~------- 95 (365)
.- .+... .|.....
T Consensus 70 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~ 149 (434)
T PRK07233 70 GLEDKLRWRETKTGYYVDGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRWSGEGVYEV 149 (434)
T ss_pred CCCCceeeccCceEEEECCeEecCCCHHHHHcCCCCCHHHHHHhHHHHHhhhhcccccccccccHHHHHHHhcCHHHHHH
Confidence 00 00000 0000000
Q ss_pred ----------c-----cc-------cc---CC-----CcceEEcCCChHHHHHHHHhhC---CCceEEEeeeeEEeeecC
Q psy12489 96 ----------G-----YK-------SR---KK-----NVTHYVTPQGSSSIVKYFLNKS---NIDEICYNTFLETMAKTD 142 (365)
Q Consensus 96 ----------~-----~~-------~~---~~-----~~~~~~~~~g~~~l~~~l~~~~---g~~~i~~~~~V~~i~~~~ 142 (365)
+ +. .. .. ....+.+.+|+..+++.|.+.+ | ++|+++++|++|+.++
T Consensus 150 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g-~~v~~~~~V~~i~~~~ 228 (434)
T PRK07233 150 FWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARG-GEIRLGTPVTSVVIDG 228 (434)
T ss_pred HHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcC-ceEEeCCCeeEEEEcC
Confidence 0 00 00 00 1124456889999999997754 6 7999999999999877
Q ss_pred CCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEEEEeccCCCCCCcceEEecC
Q psy12489 143 STNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDD 222 (365)
Q Consensus 143 ~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~ 222 (365)
+++.+...+++++.+|+||+|+|+..+.+++++ ++...++.+++++|.+..++.+.++++...+ .+....+
T Consensus 229 --~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 299 (434)
T PRK07233 229 --GGVTGVEVDGEEEDFDAVISTAPPPILARLVPD------LPADVLARLRRIDYQGVVCMVLKLRRPLTDY-YWLNIND 299 (434)
T ss_pred --CceEEEEeCCceEECCEEEECCCHHHHHhhcCC------CcHHHHhhhcccCccceEEEEEEecCCCCCC-ceeeecC
Confidence 777655566778999999999999888887743 3445567788888999999999999875332 2222222
Q ss_pred C-CcEEEeeec-CCCCC-CCCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCCCC--CCCceEeeecCCCCC
Q psy12489 223 N-EIIRYISFD-NVKRN-RPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSW--PLPAETKLQTWKYSQ 297 (365)
Q Consensus 223 ~-~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~--~~~~~~~~~rw~~a~ 297 (365)
. .++..+... +..+. .+++...+++..........+..++++ +++.++++|.+++|.. ..+....+.||+++.
T Consensus 300 ~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~ 377 (434)
T PRK07233 300 PGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEE--LLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQ 377 (434)
T ss_pred CCCCcceEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHH--HHHHHHHHHHHhCCCCChhheeeEEEEEecccc
Confidence 1 233322222 22122 222222222222111111234456677 9999999999999854 235667788999998
Q ss_pred CcCCCCCc--ccceeecCCCeEEEeccccc--CCCchhHHHHHHHHHHhhhhcc
Q psy12489 298 VVDPHRDK--LGFMQFSAKPLVICIGDSYV--PQSNFDGCIHSAKQTTGASMVG 347 (365)
Q Consensus 298 ~~~~~~~~--~~~~~~~~~~~l~~aGd~~~--~~~~~~gA~~SG~~aA~~l~~~ 347 (365)
|.+..+.. ...+. ...++|+||||+.. ++++|++|+.||++||++|+..
T Consensus 378 ~~~~~g~~~~~~~~~-~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~ 430 (434)
T PRK07233 378 PIYEPGYLDKIPPYD-TPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILED 430 (434)
T ss_pred ccccCchhhcCCCcc-cCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhh
Confidence 87543211 11222 23478999999643 2469999999999999999753
No 17
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.96 E-value=1.2e-27 Score=228.53 Aligned_cols=226 Identities=19% Similarity=0.226 Sum_probs=156.6
Q ss_pred CCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHH
Q psy12489 110 PQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAA 189 (365)
Q Consensus 110 ~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~ 189 (365)
.+++..+...+++..+ .+|++|++|++|+.++ +++.+.+.+|+++.||+||+|+|+..+.+ +.+.|+++...+
T Consensus 208 ~g~~~~~~~~~~~~~g-~~i~l~~~V~~I~~~~--~~v~v~~~~g~~~~ad~VI~a~p~~~l~~----i~~~p~l~~~~~ 280 (450)
T PF01593_consen 208 MGGLSLALALAAEELG-GEIRLNTPVTRIERED--GGVTVTTEDGETIEADAVISAVPPSVLKN----ILLLPPLPEDKR 280 (450)
T ss_dssp TTTTHHHHHHHHHHHG-GGEESSEEEEEEEEES--SEEEEEETTSSEEEESEEEE-S-HHHHHT----SEEESTSHHHHH
T ss_pred ccchhHHHHHHHhhcC-ceeecCCcceeccccc--cccccccccceEEecceeeecCchhhhhh----hhhccccccccc
Confidence 4455666666666667 8999999999999999 99999999999999999999999887764 344466888788
Q ss_pred HHhhcCCccceeEEEEeccCCCCCC---cceEEecCC-CcEEEeeecCCCCCCCCCCceEEEEeChhhhhhhcCCCCchh
Q psy12489 190 QVLLDVEYSSRYAFGMFFDKQFERP---FDIKYFDDN-EIIRYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRN 265 (365)
Q Consensus 190 ~~~~~~~~~~~~~v~l~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 265 (365)
++++.++|.+..++++.|+.++|.+ ..++...+. ....++...+..+++ ++...++............+.++++
T Consensus 281 ~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~e~- 358 (450)
T PF01593_consen 281 RAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR-PGGGVLTSYVGGPDAPEWDDLSDEE- 358 (450)
T ss_dssp HHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC-TTSEEEEEEEEHHHHHHHTTSCHHH-
T ss_pred ccccccccCcceeEEEeeecccccccccccceecccCccccccccccccCccc-ccCCcceeeeeccccchhcccchhh-
Confidence 8889999999999999999997643 445555443 244445444444433 2233455554444444455556777
Q ss_pred hHHHHHHHHHHhHCCC--CCCCceEeeecCCC-CCCcCCCCC-cccce----e--ecCC-CeEEEecccccCC--CchhH
Q psy12489 266 VIERELLDLIRKMFPS--WPLPAETKLQTWKY-SQVVDPHRD-KLGFM----Q--FSAK-PLVICIGDSYVPQ--SNFDG 332 (365)
Q Consensus 266 ~~~~~~~~~l~~~~~~--~~~~~~~~~~rw~~-a~~~~~~~~-~~~~~----~--~~~~-~~l~~aGd~~~~~--~~~~g 332 (365)
+.+.++++|+++++. ..+|....+++|.. ..+...... .+... . ..+. ++|||||||++++ +++++
T Consensus 359 -~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~g 437 (450)
T PF01593_consen 359 -ILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEG 437 (450)
T ss_dssp -HHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHH
T ss_pred -hHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHH
Confidence 999999999999984 34556666778874 222111100 01111 1 1233 5899999999955 79999
Q ss_pred HHHHHHHHHhhhh
Q psy12489 333 CIHSAKQTTGASM 345 (365)
Q Consensus 333 A~~SG~~aA~~l~ 345 (365)
|+.||++||++|+
T Consensus 438 A~~sG~~aA~~il 450 (450)
T PF01593_consen 438 AILSGRRAAEEIL 450 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999986
No 18
>KOG0685|consensus
Probab=99.96 E-value=8.7e-28 Score=217.81 Aligned_cols=323 Identities=16% Similarity=0.190 Sum_probs=207.4
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeec---ChhcchhHHHhhh
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITT---TPDFLSNHTDIYQ 79 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~---~~~~~~~~~~~~~ 79 (365)
+|+|||||+|||+||.+|-++| +.+++|||+++|+|||+.|..+.. -.+|+|++|++. +|-| ++.+
T Consensus 23 kIvIIGAG~AGLaAA~rLle~g---f~~~~IlEa~dRIGGRI~ti~~~d---~~ielGAqwihG~~gNpVY-----~la~ 91 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENG---FIDVLILEASDRIGGRIHTIPFAD---GVIELGAQWIHGEEGNPVY-----ELAK 91 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhC---CceEEEEEeccccCceEeeEEcCC---CeEeecceeecCCCCChHH-----HHHH
Confidence 6999999999999999999888 589999999999999999999863 389999999987 2222 2222
Q ss_pred hhhh------cCcc-------------------cc-------------------------------------cccccc--
Q psy12489 80 PLLD------EKLL-------------------EP-------------------------------------FTANII-- 95 (365)
Q Consensus 80 ~l~~------~~~~-------------------~~-------------------------------------~~~~~~-- 95 (365)
+..+ .|.. .. +.....
T Consensus 92 ~~g~~~~~~~tg~~~~~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r~~~~~~~~~SvG~~ln~~~~~~~~~~e~~~~~ 171 (498)
T KOG0685|consen 92 EYGDLKLLEVTGPAYVDNFHTRSNGEVVPEELLDELNEITVTLSDKLREAEIAHDEGSVGEYLNSEFWDELRGPENPEID 171 (498)
T ss_pred HhCccceeccCCccccceeEEEecCccCcHHHHHHHHHHHHhhhhhcccccccCccccHHHHHHHHHHHHhccccccchh
Confidence 1100 0000 00 000000
Q ss_pred -------------------cc-----------ccc-CCCc--ceEEcCCChHHHHHHHHhhCCCceEE--------Eeee
Q psy12489 96 -------------------GY-----------KSR-KKNV--THYVTPQGSSSIVKYFLNKSNIDEIC--------YNTF 134 (365)
Q Consensus 96 -------------------~~-----------~~~-~~~~--~~~~~~~g~~~l~~~l~~~~g~~~i~--------~~~~ 134 (365)
+. ..+ ..+. .......|+..+++.|.+..+...+. ++++
T Consensus 172 k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~r 251 (498)
T KOG0685|consen 172 KTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTR 251 (498)
T ss_pred hHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCCCcchhcCchhhhccccc
Confidence 00 000 0011 22234568889999888755434444 4599
Q ss_pred eEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEEEEeccCCCCCC
Q psy12489 135 LETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERP 214 (365)
Q Consensus 135 V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~ 214 (365)
|.+|+..+ ++.+.|++.||+.+.||+||+|+++..+.+-. ..-|.|+||+.+.++++++-+..+.|+++.|++++|++
T Consensus 252 v~~I~~~~-~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h-~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~ 329 (498)
T KOG0685|consen 252 VENINWKN-TGEVKLRCSDGEVFHADHVIVTVSLGVLKEQH-HKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPS 329 (498)
T ss_pred ceeeccCC-CCcEEEEEeCCcEEeccEEEEEeechhhhhhh-hhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCC
Confidence 99999875 25699999999999999999999988776522 23467889999999999999999999999999998764
Q ss_pred -cceEEe--cCCC-------------cEEEeeecCCCCCCCCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhH
Q psy12489 215 -FDIKYF--DDNE-------------IIRYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKM 278 (365)
Q Consensus 215 -~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~ 278 (365)
+.++.+ .+.. .+..+..-+. . ...+........+......++|+ +.+.+..-|+++
T Consensus 330 ~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~----~--~~vL~gWiaG~~~~~me~lsdEe--v~e~~~~~lr~f 401 (498)
T KOG0685|consen 330 DWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSW----A--PNVLLGWIAGREARHMETLSDEE--VLEGLTKLLRKF 401 (498)
T ss_pred CCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCc----c--hhhhheeccCCcceehhhCCHHH--HHHHHHHHHHHh
Confidence 444321 1111 0000000000 0 01222222222222333457787 999999999999
Q ss_pred CCCC--CCCceEeeecCC--------CCCCcCCCC-Cccccee-------ecCCCeEEEecccccC--CCchhHHHHHHH
Q psy12489 279 FPSW--PLPAETKLQTWK--------YSQVVDPHR-DKLGFMQ-------FSAKPLVICIGDSYVP--QSNFDGCIHSAK 338 (365)
Q Consensus 279 ~~~~--~~~~~~~~~rw~--------~a~~~~~~~-~~~~~~~-------~~~~~~l~~aGd~~~~--~~~~~gA~~SG~ 338 (365)
+++. +.|.-...+.|. |++...... ..-+.+. ....+.|.|||++++. ..+++||++||+
T Consensus 402 l~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~ 481 (498)
T KOG0685|consen 402 LKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGW 481 (498)
T ss_pred cCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhH
Confidence 8753 445444445664 222111100 0001111 1244689999999882 389999999999
Q ss_pred HHHhhhhc
Q psy12489 339 QTTGASMV 346 (365)
Q Consensus 339 ~aA~~l~~ 346 (365)
|.|++|+.
T Consensus 482 REA~RL~~ 489 (498)
T KOG0685|consen 482 READRLLE 489 (498)
T ss_pred HHHHHHHH
Confidence 99999986
No 19
>PRK07208 hypothetical protein; Provisional
Probab=99.95 E-value=3.4e-26 Score=221.38 Aligned_cols=326 Identities=13% Similarity=0.134 Sum_probs=210.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeec-ChhcchhHHHhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITT-TPDFLSNHTDIYQP 80 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~-~~~~~~~~~~~~~~ 80 (365)
+||+|||||+|||++|+.|+++| ++|+|+|+++++||++.|.... ++.+|.|++++.. ++... +++++
T Consensus 5 ~~vvIiGaGisGL~aA~~L~~~g----~~v~v~E~~~~~GG~~~s~~~~---g~~~d~G~h~~~~~~~~~~----~l~~~ 73 (479)
T PRK07208 5 KSVVIIGAGPAGLTAAYELLKRG----YPVTVLEADPVVGGISRTVTYK---GNRFDIGGHRFFSKSPEVM----DLWNE 73 (479)
T ss_pred CcEEEECcCHHHHHHHHHHHHCC----CcEEEEecCCCCCceeeeeccC---CceEccCCceeccCCHHHH----HHHHH
Confidence 59999999999999999999998 9999999999999999887663 5789999887765 33222 22222
Q ss_pred hhh---------------cCcc----------------------------------------cccccc-c----------
Q psy12489 81 LLD---------------EKLL----------------------------------------EPFTAN-I---------- 94 (365)
Q Consensus 81 l~~---------------~~~~----------------------------------------~~~~~~-~---------- 94 (365)
+.. .|.. .+|... +
T Consensus 74 l~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~g~~~~~~~~~ 153 (479)
T PRK07208 74 ILPDDDFLLRPRLSRIYYRGKFFDYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDSFEDWVINRFGRRLYSTFFK 153 (479)
T ss_pred hcCCCccccccccceEEECCEEecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhCHHHHHHHHH
Confidence 210 0000 000000 0
Q ss_pred -----------ccccc-----c--------------CC---------------CcceEEcCCChHHHHHHHHhhC---CC
Q psy12489 95 -----------IGYKS-----R--------------KK---------------NVTHYVTPQGSSSIVKYFLNKS---NI 126 (365)
Q Consensus 95 -----------~~~~~-----~--------------~~---------------~~~~~~~~~g~~~l~~~l~~~~---g~ 126 (365)
..+.. + .. ......+.+|+..+++.|.+.+ |
T Consensus 154 p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g- 232 (479)
T PRK07208 154 GYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALG- 232 (479)
T ss_pred HhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcC-
Confidence 00000 0 00 0112234789999999887654 6
Q ss_pred ceEEEeeeeEEeeecCCCCcE--EEEe--cCCC--eeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccce
Q psy12489 127 DEICYNTFLETMAKTDSTNQI--EVTS--KEGK--KGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSR 200 (365)
Q Consensus 127 ~~i~~~~~V~~i~~~~~~~~~--~v~~--~~g~--~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~ 200 (365)
++|++|++|++|..++ +++ .+.. .+|+ ++.+|+||+|+|+..+.+++.+ +++....+.+++++|.+.
T Consensus 233 ~~i~~~~~V~~I~~~~--~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~-----~~~~~~~~~~~~l~~~~~ 305 (479)
T PRK07208 233 GKVVLNAKVVGLHHDG--DGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDP-----PPPPEVRAAAAGLRYRDF 305 (479)
T ss_pred CEEEeCCEEEEEEEcC--CcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCC-----CCCHHHHHHHhCCCccee
Confidence 8999999999999887 553 2332 2353 5789999999999888887753 255677788889999998
Q ss_pred eEEEEeccCCCCCCcceEEecCC-CcEEEeee-cCCCCCCCCCCceEEE--EeChhhhhhhcCCCCchhhHHHHHHHHHH
Q psy12489 201 YAFGMFFDKQFERPFDIKYFDDN-EIIRYISF-DNVKRNRPDEPISVCV--HTTTQYYNSFLDSETPRNVIERELLDLIR 276 (365)
Q Consensus 201 ~~v~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~e~~~~~~~~~~~l~ 276 (365)
.++.+.++++...+..+.++++. ..+..+.. .+..+...+.+...++ ..........+..++++ +++.++++|.
T Consensus 306 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~dee--l~~~~~~~L~ 383 (479)
T PRK07208 306 ITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDED--LIALAIQELA 383 (479)
T ss_pred EEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHH--HHHHHHHHHH
Confidence 89999999875544445555432 12222211 1111222222221222 11111122345567788 9999999999
Q ss_pred hHCCC-CCCCceEeeecCCCCCCcCCCCCcc--ccee--ecCCCeEEEeccccc-CCCchhHHHHHHHHHHhhhhccc
Q psy12489 277 KMFPS-WPLPAETKLQTWKYSQVVDPHRDKL--GFMQ--FSAKPLVICIGDSYV-PQSNFDGCIHSAKQTTGASMVGK 348 (365)
Q Consensus 277 ~~~~~-~~~~~~~~~~rw~~a~~~~~~~~~~--~~~~--~~~~~~l~~aGd~~~-~~~~~~gA~~SG~~aA~~l~~~~ 348 (365)
++... ...+....+.||.++.|.+..++.. ..+. ....++|+++|++.. .+.++|+|+.||.++|++|+.+.
T Consensus 384 ~l~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 384 RLGLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred HcCCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcCC
Confidence 97432 2346777889999999977543211 1111 133478999998764 35799999999999999998764
No 20
>PLN02612 phytoene desaturase
Probab=99.95 E-value=1.1e-25 Score=219.99 Aligned_cols=220 Identities=12% Similarity=0.087 Sum_probs=136.7
Q ss_pred HHHHHHHHh---hCCCceEEEeeeeEEeeecCCCCc--EEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHH
Q psy12489 114 SSIVKYFLN---KSNIDEICYNTFLETMAKTDSTNQ--IEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGA 188 (365)
Q Consensus 114 ~~l~~~l~~---~~g~~~i~~~~~V~~i~~~~~~~~--~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~ 188 (365)
..+++.|.+ +.| ++|++|++|++|+.++ ++ +.+.+.+|+++.+|+||+|+|+..+..|++... .+ ..+
T Consensus 308 ~~l~~~l~~~l~~~G-~~I~l~~~V~~I~~~~--~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~-~~---~~~ 380 (567)
T PLN02612 308 ERLCMPIVDHFQSLG-GEVRLNSRIKKIELND--DGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQW-KE---IPY 380 (567)
T ss_pred HHHHHHHHHHHHhcC-CEEEeCCeeeEEEECC--CCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchh-cC---cHH
Confidence 345555544 357 8999999999999866 44 346777888899999999999887777775421 11 234
Q ss_pred HHHhhcCCccceeEEEEeccCCCCCCcceEEecCCCcEEEeeecCCC--CC-CCCCCceEEEEeChhhhhhhcCCCCchh
Q psy12489 189 AQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEIIRYISFDNVK--RN-RPDEPISVCVHTTTQYYNSFLDSETPRN 265 (365)
Q Consensus 189 ~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 265 (365)
...++++.+.++.++++.|+++++.++...++.+..... ++.+.+. +. .++ +..++..... -+.+....++++
T Consensus 381 ~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~~~~~~~~~~-~~~d~S~~~~~~~~~-~~~ll~~~~~-~a~~~~~~sdee- 456 (567)
T PLN02612 381 FKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLS-VYADMSTTCKEYYDP-NKSMLELVFA-PAEEWISRSDED- 456 (567)
T ss_pred HHHHHhcCCCCeEEEEEEECcccCCCCCceeecCCCCce-eehhhhhcchhhcCC-CCeEEEEEEE-cChhhhcCCHHH-
Confidence 455567778899999999999976555555543332222 1112111 11 122 2233221111 122334557788
Q ss_pred hHHHHHHHHHHhHCCCCCCC-------ceEeeecCCCCC----CcCCCCCcccceeecCCCeEEEecccccCC--CchhH
Q psy12489 266 VIERELLDLIRKMFPSWPLP-------AETKLQTWKYSQ----VVDPHRDKLGFMQFSAKPLVICIGDSYVPQ--SNFDG 332 (365)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~-------~~~~~~rw~~a~----~~~~~~~~~~~~~~~~~~~l~~aGd~~~~~--~~~~g 332 (365)
+++.++++|.++||....+ ....+.+.+++. |.... ..+ .. .++.++|||||||+.++ ++|||
T Consensus 457 -i~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~-~rp-~~-~tPi~~l~lAGd~t~~~~~~smeG 532 (567)
T PLN02612 457 -IIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEP-CRP-LQ-RSPIEGFYLAGDYTKQKYLASMEG 532 (567)
T ss_pred -HHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcc-cCc-cc-cCccCCEEEeecceeCCchhhHHH
Confidence 9999999999999864211 111222233221 11110 011 11 24457899999999733 79999
Q ss_pred HHHHHHHHHhhhhccc
Q psy12489 333 CIHSAKQTTGASMVGK 348 (365)
Q Consensus 333 A~~SG~~aA~~l~~~~ 348 (365)
|+.||++||++|+...
T Consensus 533 Av~SG~~AA~~I~~~~ 548 (567)
T PLN02612 533 AVLSGKLCAQSIVQDY 548 (567)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998654
No 21
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.94 E-value=1.1e-24 Score=209.44 Aligned_cols=218 Identities=14% Similarity=0.131 Sum_probs=133.6
Q ss_pred HHHHHHHHh---hCCCceEEEeeeeEEeeecCCCCcE-EEEecCCC-----eeecCEEEEcCChhhHHHhhccccccccc
Q psy12489 114 SSIVKYFLN---KSNIDEICYNTFLETMAKTDSTNQI-EVTSKEGK-----KGIFDIVVLSMPAPQVTDLFNRSEMMHIA 184 (365)
Q Consensus 114 ~~l~~~l~~---~~g~~~i~~~~~V~~i~~~~~~~~~-~v~~~~g~-----~~~~d~vV~a~p~~~~~~ll~~~~~~~~l 184 (365)
..+.+.|.+ +.| ++|++|++|++|...++ +.+ .+.+.+++ ++.||.||+|+|++.+.++|+.. +
T Consensus 213 ~~l~~~l~~~l~~~g-~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~-----~ 285 (453)
T TIGR02731 213 ERLCQPIVDYITSRG-GEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQP-----W 285 (453)
T ss_pred HHHHHHHHHHHHhcC-CEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchh-----h
Confidence 344444443 237 89999999999986551 323 45555554 68899999999998888887542 1
Q ss_pred h-HHHHHHhhcCCccceeEEEEeccCCCCCCcceEEecCCCcEEEeeecC--CCCCCCCCCceEEEEeChhhhhhhcCCC
Q psy12489 185 L-TGAAQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEIIRYISFDN--VKRNRPDEPISVCVHTTTQYYNSFLDSE 261 (365)
Q Consensus 185 ~-~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (365)
+ ....+.++++++.+..++.+.|+++++.+. ++.+.+.........-+ ..+..+++...+.+.... .....+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~--~~~~~~~~ 362 (453)
T TIGR02731 286 KQMPFFQKLNGLEGVPVINVHIWFDRKLTTVD-HLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAP--AADWIGRS 362 (453)
T ss_pred hcCHHHHHhhcCCCCcEEEEEEEEccccCCCC-ceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecC--hhhhhcCC
Confidence 1 234566677788899999999999865433 33333332222111101 112222222222232222 23345567
Q ss_pred CchhhHHHHHHHHHHhHCCCC---CCC---ceEeeecCCCCCCcCCCCC--cccceeecCCCeEEEeccccc--CCCchh
Q psy12489 262 TPRNVIERELLDLIRKMFPSW---PLP---AETKLQTWKYSQVVDPHRD--KLGFMQFSAKPLVICIGDSYV--PQSNFD 331 (365)
Q Consensus 262 ~e~~~~~~~~~~~l~~~~~~~---~~~---~~~~~~rw~~a~~~~~~~~--~~~~~~~~~~~~l~~aGd~~~--~~~~~~ 331 (365)
+|+ +.+.++++|.++||.. ..+ ....+.+.+++.+...++. ....+ ..+.++|||||||+. +.++||
T Consensus 363 ~ee--~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~-~~p~~~l~~AG~~~a~~~~g~~e 439 (453)
T TIGR02731 363 DEE--IIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQ-KTPIPNFFLAGDYTKQKYLASME 439 (453)
T ss_pred HHH--HHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccc-cCccCCEEEeehhccCcccccHH
Confidence 788 9999999999999842 123 2334445556643221111 01112 244678999999986 247999
Q ss_pred HHHHHHHHHHhhh
Q psy12489 332 GCIHSAKQTTGAS 344 (365)
Q Consensus 332 gA~~SG~~aA~~l 344 (365)
||+.||++||++|
T Consensus 440 gAi~SG~~AA~~v 452 (453)
T TIGR02731 440 GAVLSGKLCAQAI 452 (453)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999986
No 22
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.93 E-value=2.2e-24 Score=207.10 Aligned_cols=219 Identities=11% Similarity=0.082 Sum_probs=133.1
Q ss_pred HHHHHHHhhCCCceEEEeeeeEEeeecCCCCc----EEEEecCC---CeeecCEEEEcCChhhHHHhhccccccccchHH
Q psy12489 115 SIVKYFLNKSNIDEICYNTFLETMAKTDSTNQ----IEVTSKEG---KKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTG 187 (365)
Q Consensus 115 ~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~----~~v~~~~g---~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~ 187 (365)
.+.+.|.+ .| ++|+++++|++|+.+++.++ +.|.+.+| +++.+|+||+|+|.+.+.+|+++.. . - ..
T Consensus 224 pl~~~L~~-~G-g~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~--~-~-~~ 297 (474)
T TIGR02732 224 PILEYIEA-RG-GKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEW--R-Q-FE 297 (474)
T ss_pred HHHHHHHH-CC-CEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhh--h-c-CH
Confidence 36666665 47 89999999999987531012 22334433 4588999999999999999987631 1 0 12
Q ss_pred HHHHhhcCCccceeEEEEeccCCCCCCc--------------ceEEecCCCcEEEeee-cCCCC-CC-CCCCce-EEEEe
Q psy12489 188 AAQVLLDVEYSSRYAFGMFFDKQFERPF--------------DIKYFDDNEIIRYISF-DNVKR-NR-PDEPIS-VCVHT 249 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~-~~~~~ 249 (365)
....+..+.+.++.++++.|++++..+. +...+..+..+.+.+. ....+ .. +++... +.+..
T Consensus 298 ~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (474)
T TIGR02732 298 EFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVL 377 (474)
T ss_pred HHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEE
Confidence 4556778889999999999998643321 1100111111112111 00011 11 111122 22222
Q ss_pred ChhhhhhhcCCCCchhhHHHHHHHHHHhHCCCCCC--CceEeeecCCCCCCcCCCCC---cccceeecCCCeEEEecccc
Q psy12489 250 TTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPL--PAETKLQTWKYSQVVDPHRD---KLGFMQFSAKPLVICIGDSY 324 (365)
Q Consensus 250 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~--~~~~~~~rw~~a~~~~~~~~---~~~~~~~~~~~~l~~aGd~~ 324 (365)
.. +...++.++++ ++++++++|+++||.... +.+..+.+.+.+.+...++. +|. ..++.+|||+||||+
T Consensus 378 ~~--~~~~~~~~~~~--l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~--~~t~~~~l~lAGD~t 451 (474)
T TIGR02732 378 TP--GDPWMPESNEE--IAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPD--QKTPISNFFLAGSYT 451 (474)
T ss_pred eC--hhhhcCCCHHH--HHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCC--CCCCCCCeEEecccc
Confidence 22 23455677788 999999999999986432 44445666665554422211 121 123457899999999
Q ss_pred cC--CCchhHHHHHHHHHHhhhh
Q psy12489 325 VP--QSNFDGCIHSAKQTTGASM 345 (365)
Q Consensus 325 ~~--~~~~~gA~~SG~~aA~~l~ 345 (365)
.+ ..+||+|+.||.+||+.|+
T Consensus 452 ~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 452 QQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred ccCchHHHhHHHHHHHHHHHHhC
Confidence 82 1799999999999999874
No 23
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.93 E-value=7.6e-24 Score=201.66 Aligned_cols=220 Identities=14% Similarity=0.165 Sum_probs=147.4
Q ss_pred eEEcCCChHHHHHH-HHh---hCCCceEEEeeeeEEeeecCCCCcEEEEe-cCCCeeecCEEEEcCChhhHHHhhccccc
Q psy12489 106 HYVTPQGSSSIVKY-FLN---KSNIDEICYNTFLETMAKTDSTNQIEVTS-KEGKKGIFDIVVLSMPAPQVTDLFNRSEM 180 (365)
Q Consensus 106 ~~~~~~g~~~l~~~-l~~---~~g~~~i~~~~~V~~i~~~~~~~~~~v~~-~~g~~~~~d~vV~a~p~~~~~~ll~~~~~ 180 (365)
.+.+.+|+.+++.. |++ +.| ++|++|++|++|+.++ +++.+.. .+|+++.||+||+|+|++++.+++++.
T Consensus 188 ~~~~~gG~~~~~~~~l~~~l~~~g-~~i~~~~~V~~i~~~~--~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~-- 262 (419)
T TIGR03467 188 LLLPRVPLSELFPEPARRWLDSRG-GEVRLGTRVRSIEANA--GGIRALVLSGGETLPADAVVLAVPPRHAASLLPGE-- 262 (419)
T ss_pred eeeeCCCHHHHHHHHHHHHHHHcC-CEEEcCCeeeEEEEcC--CcceEEEecCCccccCCEEEEcCCHHHHHHhCCCc--
Confidence 34456788776544 554 337 8999999999999888 7655433 367788999999999999998887541
Q ss_pred cccchHHHHHHhhcCCccceeEEEEeccCCCCCCcceEEecCCCcEEEeeecCCCCCCCCCCceEEEEeChhhhhhhcCC
Q psy12489 181 MHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEIIRYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDS 260 (365)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (365)
..++.+++++|.++.++++.|+++++.+.....+.+ .+..|++..+.+++. ...+.+.... +.+..+.
T Consensus 263 ------~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~ 330 (419)
T TIGR03467 263 ------DLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVG-GLAQWLFDRGQLAGE---PGYLAVVISA--ARDLVDL 330 (419)
T ss_pred ------hHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecC-CceeEEEECCcCCCC---CCEEEEEEec--chhhccC
Confidence 245677888999999999999998754333322222 355666543332221 1223332222 2344556
Q ss_pred CCchhhHHHHHHHHHHhHCCCC--CCCceEeeecCCCCCCcCCCCCc--ccceeecCCCeEEEecccccCC--CchhHHH
Q psy12489 261 ETPRNVIERELLDLIRKMFPSW--PLPAETKLQTWKYSQVVDPHRDK--LGFMQFSAKPLVICIGDSYVPQ--SNFDGCI 334 (365)
Q Consensus 261 ~~e~~~~~~~~~~~l~~~~~~~--~~~~~~~~~rw~~a~~~~~~~~~--~~~~~~~~~~~l~~aGd~~~~~--~~~~gA~ 334 (365)
++++ +++.++++|.++||.. ..+.+..+.+|..+.+....+.. ...+. .+.++|+|||||+.++ ++||||+
T Consensus 331 ~~e~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~l~~aGd~~~~~~~~~~egA~ 407 (419)
T TIGR03467 331 PREE--LADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGAR-TPWPNLFLAGDWTATGWPATMEGAV 407 (419)
T ss_pred CHHH--HHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCC-CCcCCEEEecccccCCCcchHHHHH
Confidence 7777 9999999999999854 34556556666544433221111 12222 3457899999999932 5999999
Q ss_pred HHHHHHHhhhh
Q psy12489 335 HSAKQTTGASM 345 (365)
Q Consensus 335 ~SG~~aA~~l~ 345 (365)
.||.+||++|+
T Consensus 408 ~SG~~aA~~i~ 418 (419)
T TIGR03467 408 RSGYQAAEAVL 418 (419)
T ss_pred HHHHHHHHHHh
Confidence 99999999886
No 24
>PLN02487 zeta-carotene desaturase
Probab=99.92 E-value=6.9e-23 Score=198.33 Aligned_cols=239 Identities=9% Similarity=-0.007 Sum_probs=145.0
Q ss_pred EEcCCChHH-HHHHHHh---hCCCceEEEeeeeEEeeecCCCCc----EEEEe---cCCCeeecCEEEEcCChhhHHHhh
Q psy12489 107 YVTPQGSSS-IVKYFLN---KSNIDEICYNTFLETMAKTDSTNQ----IEVTS---KEGKKGIFDIVVLSMPAPQVTDLF 175 (365)
Q Consensus 107 ~~~~~g~~~-l~~~l~~---~~g~~~i~~~~~V~~i~~~~~~~~----~~v~~---~~g~~~~~d~vV~a~p~~~~~~ll 175 (365)
....+|+.. +++.+++ +.| ++|+++++|++|..+++.++ +.+.+ .+++++.+|.||+|+|++.+.+|+
T Consensus 287 ~~~~Gg~~~~l~~pl~~~L~~~G-g~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 287 RMLKGSPDVRLSGPIAKYITDRG-GRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLL 365 (569)
T ss_pred eecCCCchHHHHHHHHHHHHHcC-CEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhC
Confidence 345677774 6665553 347 99999999999988741122 34555 234468899999999999998988
Q ss_pred ccccccccchHHHHHHhhcCCccceeEEEEeccCCCCCCcc-----------eE---EecCCCcEEEeee-cCCCCC-C-
Q psy12489 176 NRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERPFD-----------IK---YFDDNEIIRYISF-DNVKRN-R- 238 (365)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~-----------~~---~~~~~~~~~~~~~-~~~~~~-~- 238 (365)
++.. +.. .....+..+.+.++.++++.|++++..+.. ++ .+..+..+.+.+. .-..+. .
T Consensus 366 p~~~--~~~--~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~ 441 (569)
T PLN02487 366 PEQW--REY--EFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYY 441 (569)
T ss_pred Cchh--hcc--HHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHc
Confidence 7642 111 235567788889999999999987432211 11 0001111222111 000010 0
Q ss_pred -CCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCCCCC--CCceEeeecCCCCCCcCCCCC---cccceeec
Q psy12489 239 -PDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWP--LPAETKLQTWKYSQVVDPHRD---KLGFMQFS 312 (365)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~--~~~~~~~~rw~~a~~~~~~~~---~~~~~~~~ 312 (365)
...+..+.+..+. +....+.++++ ++++++++|.++||... .+.+..+.+.+.+.....++. +|. ..+
T Consensus 442 ~~~~g~~l~~vis~--a~~~~~~~~~e--i~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~--~~T 515 (569)
T PLN02487 442 KEGEGSLIQAVLTP--GDPYMPLSNDK--IVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPD--QKT 515 (569)
T ss_pred ccCCceEEEEEEcC--CccccCCCHHH--HHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCC--CCC
Confidence 0112233333222 23556778888 99999999999998643 345555555543332222211 121 124
Q ss_pred CCCeEEEecccccC--CCchhHHHHHHHHHHhhhhccchhhhhhhhh
Q psy12489 313 AKPLVICIGDSYVP--QSNFDGCIHSAKQTTGASMVGKHWMLGLLRY 357 (365)
Q Consensus 313 ~~~~l~~aGd~~~~--~~~~~gA~~SG~~aA~~l~~~~~~~~~~~~~ 357 (365)
+.+|||+||||+.+ ..+||+|+.||.+||+.|+... ..+.+|++
T Consensus 516 ~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~-~~~~~~~~ 561 (569)
T PLN02487 516 PISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG-EELAGLRK 561 (569)
T ss_pred CCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh-hhhhhhhh
Confidence 45789999999882 2699999999999999998654 44444443
No 25
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.92 E-value=1.4e-22 Score=196.72 Aligned_cols=231 Identities=12% Similarity=0.110 Sum_probs=139.2
Q ss_pred eEEcCCChHHHHHHHHhhC---CCceEEEeeeeEEeeecCCCCc-EEEEecCC-----CeeecCEEEEcCChhhHHHhhc
Q psy12489 106 HYVTPQGSSSIVKYFLNKS---NIDEICYNTFLETMAKTDSTNQ-IEVTSKEG-----KKGIFDIVVLSMPAPQVTDLFN 176 (365)
Q Consensus 106 ~~~~~~g~~~l~~~l~~~~---g~~~i~~~~~V~~i~~~~~~~~-~~v~~~~g-----~~~~~d~vV~a~p~~~~~~ll~ 176 (365)
.|.+.+|+++++++|.+.+ | ++|+++++|++|..++ ++ ..+...++ +++.+|+||+++|+..+.+++.
T Consensus 224 ~~~~~GG~~~l~~aL~~~~~~~G-~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~ 300 (492)
T TIGR02733 224 LWHLHGSMQTLSDRLVEALKRDG-GNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLG 300 (492)
T ss_pred ceeecCcHHHHHHHHHHHHHhcC-CEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcC
Confidence 3557899999999998765 7 8999999999998876 53 12323233 4688999999999988888876
Q ss_pred cccccccchHHHHHHhhcCCccc-eeEEEEeccCC-C--CC-CcceEEecCCCcEEEeeecCCCCCCCCCCc-eEEEEeC
Q psy12489 177 RSEMMHIALTGAAQVLLDVEYSS-RYAFGMFFDKQ-F--ER-PFDIKYFDDNEIIRYISFDNVKRNRPDEPI-SVCVHTT 250 (365)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~~~~-~~~v~l~~~~~-~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 250 (365)
+. .++....+.++++++.+ .+++++.+++. . +. +......... ..-+++..+..+...|.+. .+++...
T Consensus 301 ~~----~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~aP~G~~~l~~~~~ 375 (492)
T TIGR02733 301 PL----GLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQ-GSLFVSISQEGDGRAPQGEATLIASSF 375 (492)
T ss_pred cc----cCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCC-ceEEEEeCCccccCCCCCceEEEEEcC
Confidence 42 35666677778888776 45788888874 1 11 1111122221 2233433333344433343 3322222
Q ss_pred --h-hhh---hhhcCCCCchhhHHHHHHHHHHhHCCCCCC-CceEee------ecCCCCCC---cCCCCC-----cc-cc
Q psy12489 251 --T-QYY---NSFLDSETPRNVIERELLDLIRKMFPSWPL-PAETKL------QTWKYSQV---VDPHRD-----KL-GF 308 (365)
Q Consensus 251 --~-~~~---~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~-~~~~~~------~rw~~a~~---~~~~~~-----~~-~~ 308 (365)
. .|. ...++..+++ +.+++++.+.+.+|.+.+ ++...+ .++. ..+ ..+... .+ ..
T Consensus 376 ~~~~~~~~~~~~~y~~~k~~--~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~-~~~~G~~~G~~~~~~q~~~~~~ 452 (492)
T TIGR02733 376 TDTNDWSSLDEEDYTAKKKQ--YTQTIIERLGHYFDLLEENWVHVELATPRTFERWT-GRPQGIVGGLGQRPSTFGPFGL 452 (492)
T ss_pred CCHHHHcCCCHHHHHHHHHH--HHHHHHHHHHHHCCCccccEEEEEccCCchHHHHh-CCCCcEECCCCcCccccCCcCC
Confidence 1 231 1112222333 888999999999986533 222111 1111 010 000000 00 00
Q ss_pred eeecCCCeEEEecccccCCCchhHHHHHHHHHHhhhhcc
Q psy12489 309 MQFSAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMVG 347 (365)
Q Consensus 309 ~~~~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~~ 347 (365)
-..++.+|||+||++++|++++.+++.||+.+|+.|+..
T Consensus 453 ~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 453 SSRTPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred CCCCCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 012456799999999998899999999999999999864
No 26
>KOG1276|consensus
Probab=99.91 E-value=1.5e-22 Score=181.07 Aligned_cols=329 Identities=16% Similarity=0.178 Sum_probs=222.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||++||++||+|++++++ ..|+|||++.|+||.+.+.+.. .++.+|.|...+.+....--++-+++.+|
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~--~~i~l~Ea~~RvGGwirS~r~~--ng~ifE~GPrtlrpag~~g~~~l~lv~dL 87 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPD--VTITLFEASPRVGGWIRSDRMQ--NGFIFEEGPRTLRPAGPGGAETLDLVSDL 87 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCC--ceEEEEecCCcccceeeeccCC--CceeeccCCCccCcCCcchhHHHHHHHHc
Confidence 5899999999999999999999976 6778899999999999995543 36889999887766211000111222222
Q ss_pred hhcC---------------------c---------------------------ccccccc-------------c------
Q psy12489 82 LDEK---------------------L---------------------------LEPFTAN-------------I------ 94 (365)
Q Consensus 82 ~~~~---------------------~---------------------------~~~~~~~-------------~------ 94 (365)
.-+. . +.+|..+ |
T Consensus 88 Gl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF~~RrfG 167 (491)
T KOG1276|consen 88 GLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESFARRRFG 167 (491)
T ss_pred CccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHHHHHhhh
Confidence 1100 0 0001000 0
Q ss_pred ------------ccc--------cc-------------------------------c-----------CCCcceEEcCCC
Q psy12489 95 ------------IGY--------KS-------------------------------R-----------KKNVTHYVTPQG 112 (365)
Q Consensus 95 ------------~~~--------~~-------------------------------~-----------~~~~~~~~~~~g 112 (365)
.|+ .+ . ......|...+|
T Consensus 168 ~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gG 247 (491)
T KOG1276|consen 168 KEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGG 247 (491)
T ss_pred HHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhh
Confidence 000 00 0 112334556789
Q ss_pred hHHHHHHHHhhCCC--ceEEEeeeeEEeeecCCCCcEEEEecC--CC-eeecCEEEEcCChhhHHHhhccccccccchHH
Q psy12489 113 SSSIVKYFLNKSNI--DEICYNTFLETMAKTDSTNQIEVTSKE--GK-KGIFDIVVLSMPAPQVTDLFNRSEMMHIALTG 187 (365)
Q Consensus 113 ~~~l~~~l~~~~g~--~~i~~~~~V~~i~~~~~~~~~~v~~~~--g~-~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~ 187 (365)
++.+.+++.+.++. +.|..+.++..+....+ ++|.+++.+ +. .+..+++.+|.|...+.++++..+ + .
T Consensus 248 le~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~-~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~--~----s 320 (491)
T KOG1276|consen 248 LETLPKALRKSLGEREVSISLGLKLSGNSKSRS-GNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGLQ--N----S 320 (491)
T ss_pred HhHhHHHHHHHhcccchhhhccccccccccccc-CCceeEeEcCCCceeeeccccccccchHHhhhhccccc--h----h
Confidence 99999999887762 45678888888876652 458776654 43 345677778999988999887755 3 2
Q ss_pred HHHHhhcCCccceeEEEEeccCC-CCCCc--ceEEecC-----CCcEEEeeecCCCCCCCCCCceEEEEeChhhhhhh--
Q psy12489 188 AAQVLLDVEYSSRYAFGMFFDKQ-FERPF--DIKYFDD-----NEIIRYISFDNVKRNRPDEPISVCVHTTTQYYNSF-- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~v~l~~~~~-~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 257 (365)
...++..++|.++..|.+.|..+ .+.|. .|..+++ ...++.++.....|.+++. +.+++.....|..+.
T Consensus 321 ls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s-~~vtvm~gg~~~~n~~~ 399 (491)
T KOG1276|consen 321 LSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPS-PKVTVMMGGGGSTNTSL 399 (491)
T ss_pred hhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCC-ceEEEEecccccccCcC
Confidence 36678899999999999999886 44443 3445552 1256777765566766542 256666666665532
Q ss_pred cCCCCchhhHHHHHHHHHHhHCCCCCCCceEeeecCCCCCCcCCCCCcc------cceeecCCCeEEEecccccCCCchh
Q psy12489 258 LDSETPRNVIERELLDLIRKMFPSWPLPAETKLQTWKYSQVVDPHRDKL------GFMQFSAKPLVICIGDSYVPQSNFD 331 (365)
Q Consensus 258 ~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~rw~~a~~~~~~~~~~------~~~~~~~~~~l~~aGd~~~~~~~~~ 331 (365)
...++|+ +++.+.++|.++++.-..|....+|-|..+.|.+..++.. ..+......+|+++|.|+. +.++.
T Consensus 400 ~~~S~ee--~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~-Gv~vg 476 (491)
T KOG1276|consen 400 AVPSPEE--LVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYG-GVSVG 476 (491)
T ss_pred CCCCHHH--HHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccC-CCChh
Confidence 2336677 9999999999999866679888899999888887654311 1222233347999999999 99999
Q ss_pred HHHHHHHHHHhhhh
Q psy12489 332 GCIHSAKQTTGASM 345 (365)
Q Consensus 332 gA~~SG~~aA~~l~ 345 (365)
.||+||+.+|.+++
T Consensus 477 dcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 477 DCIESGRKTAVEVI 490 (491)
T ss_pred HHHHhhHHHHHhhc
Confidence 99999999998875
No 27
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.90 E-value=1.2e-21 Score=190.65 Aligned_cols=232 Identities=13% Similarity=0.063 Sum_probs=135.6
Q ss_pred ceEEcCCChHHHHHHHHh---hCCCceEEEeeeeEEeeecCCCCc-EEEEecCCCeeecCEEEEcCChhhHHHhhccccc
Q psy12489 105 THYVTPQGSSSIVKYFLN---KSNIDEICYNTFLETMAKTDSTNQ-IEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEM 180 (365)
Q Consensus 105 ~~~~~~~g~~~l~~~l~~---~~g~~~i~~~~~V~~i~~~~~~~~-~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~ 180 (365)
..|.+.+|+..++++|.+ +.| ++|+++++|++|..++ ++ +.|.+.+|+++.+|.||+|+++..+...|-+..
T Consensus 210 g~~~~~gG~~~l~~al~~~~~~~G-~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~- 285 (502)
T TIGR02734 210 GVWFPRGGTGALVAAMAKLAEDLG-GELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNH- 285 (502)
T ss_pred eEEEcCCCHHHHHHHHHHHHHHCC-CEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCcc-
Confidence 345567888888888866 447 8999999999998776 55 678888888899999999999877664332222
Q ss_pred cccchHHHHHHhhcCCcc-ceeEEEEecc---CCCC-CCcceEEecC----------------CCcEEEeeecCCC-CCC
Q psy12489 181 MHIALTGAAQVLLDVEYS-SRYAFGMFFD---KQFE-RPFDIKYFDD----------------NEIIRYISFDNVK-RNR 238 (365)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~-~~~~v~l~~~---~~~~-~~~~~~~~~~----------------~~~~~~~~~~~~~-~~~ 238 (365)
..+....+.+++.++. +.+++++.++ ++.. .+...+++.+ ..+.-+++.++.. +..
T Consensus 286 --~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~ 363 (502)
T TIGR02734 286 --PRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSL 363 (502)
T ss_pred --ccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCC
Confidence 1222333444555544 5677788887 3322 1122222211 1133344444433 333
Q ss_pred CCCCc-eEEEEeChhh---hhhhcCCCCchhhHHHHHHHHHHhH-CCCCCC-CceEee------ecCCCCCCc---CCC-
Q psy12489 239 PDEPI-SVCVHTTTQY---YNSFLDSETPRNVIERELLDLIRKM-FPSWPL-PAETKL------QTWKYSQVV---DPH- 302 (365)
Q Consensus 239 ~~~~~-~~~~~~~~~~---~~~~~~~~~e~~~~~~~~~~~l~~~-~~~~~~-~~~~~~------~rw~~a~~~---~~~- 302 (365)
.+.+. .+.+.....+ ....++..+++ +.+++++.+.+. +|++.+ ++...+ .++. ..+. .+.
T Consensus 364 aP~G~~~~~~~~~~~~~~~~~~~~~~~k~~--~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~-~~~~G~~~G~~ 440 (502)
T TIGR02734 364 APPGCENLYVLAPVPHLGTADVDWSVEGPR--YRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRY-NAWLGSAFSLE 440 (502)
T ss_pred CCCCCccEEEEEeCCCCCCCCCCcHHHHHH--HHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhc-CCCCccccchh
Confidence 33332 3333222111 11112222334 888999999987 886532 222211 1211 1110 110
Q ss_pred ---C----CcccceeecCCCeEEEecccccCCCchhHHHHHHHHHHhhhhc
Q psy12489 303 ---R----DKLGFMQFSAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMV 346 (365)
Q Consensus 303 ---~----~~~~~~~~~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~ 346 (365)
. .++ ....++.++||+||++++|++++.+|+.||+.+|+.|+.
T Consensus 441 ~~~~q~~~~rp-~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~ 490 (502)
T TIGR02734 441 HTLTQSAWFRP-HNRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLG 490 (502)
T ss_pred hchhhcccCCC-CCCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 011 001234578999999999889999999999999999985
No 28
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.89 E-value=2.9e-20 Score=180.29 Aligned_cols=233 Identities=12% Similarity=0.143 Sum_probs=136.5
Q ss_pred eEEcCCChHHHHHHHHh---hCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhhHH-Hhhcccccc
Q psy12489 106 HYVTPQGSSSIVKYFLN---KSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVT-DLFNRSEMM 181 (365)
Q Consensus 106 ~~~~~~g~~~l~~~l~~---~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~-~ll~~~~~~ 181 (365)
.|.+.+|+..+++.|.+ +.| ++|+++++|++|..++ +..+.|.+.+|+++.+|.||+++++..+. +|+++..
T Consensus 221 ~~~~~gG~~~l~~~L~~~~~~~G-~~i~~~~~V~~I~~~~-~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~-- 296 (493)
T TIGR02730 221 INYPKGGVGQIAESLVKGLEKHG-GQIRYRARVTKIILEN-GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAEN-- 296 (493)
T ss_pred EecCCChHHHHHHHHHHHHHHCC-CEEEeCCeeeEEEecC-CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccc--
Confidence 45677788888888765 457 9999999999998765 13456788888889999999998766555 5665422
Q ss_pred ccchHHHHHHhhcCCcc-ceeEEEEeccCCCCC---CcceEEec------CCCcEEEeeecCCC-CCCCCCCce-EEEEe
Q psy12489 182 HIALTGAAQVLLDVEYS-SRYAFGMFFDKQFER---PFDIKYFD------DNEIIRYISFDNVK-RNRPDEPIS-VCVHT 249 (365)
Q Consensus 182 ~~l~~~~~~~~~~~~~~-~~~~v~l~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~ 249 (365)
++...+..++++++. +.+++++.++.+... ....+++. ...+.-+++.++.. |...+.+.. +.+..
T Consensus 297 --~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~ 374 (493)
T TIGR02730 297 --LPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFT 374 (493)
T ss_pred --cchhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEec
Confidence 333334444555554 467888888874211 11122211 11233445544433 444443433 33333
Q ss_pred Ch---hhhh---hhcCCCCchhhHHHHHHHHHHhHCCCCCC-CceEe------eecCCCCCCcCCCC---Cc--ccce--
Q psy12489 250 TT---QYYN---SFLDSETPRNVIERELLDLIRKMFPSWPL-PAETK------LQTWKYSQVVDPHR---DK--LGFM-- 309 (365)
Q Consensus 250 ~~---~~~~---~~~~~~~e~~~~~~~~~~~l~~~~~~~~~-~~~~~------~~rw~~a~~~~~~~---~~--~~~~-- 309 (365)
.. .|.. ..++..+++ +.+++++.+.+.+|.+.+ ++... ..|+. ..+.-.++ .. .+..
T Consensus 375 ~~~~~~w~~~~~~~y~~~k~~--~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~-~~~~G~~G~~~~~~~~~~~~~ 451 (493)
T TIGR02730 375 PSSMEDWQGLSPKDYEAKKEA--DAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFL-GRDSGTYGPIPRRTLPGLLPM 451 (493)
T ss_pred CCChhhccCCCcHHHHHHHHH--HHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHh-CCCCcccCCcccccccccccC
Confidence 21 1211 011112333 889999999999886532 22211 11211 11110011 00 0011
Q ss_pred --eecCCCeEEEecccccCCCchhHHHHHHHHHHhhhhcc
Q psy12489 310 --QFSAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMVG 347 (365)
Q Consensus 310 --~~~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~~ 347 (365)
..++.+|||+||++++|++++.+|+.||+.+|++|+.+
T Consensus 452 ~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 452 PFNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred CCCCCCCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 12456789999999998899999999999999999853
No 29
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.84 E-value=1.7e-20 Score=163.67 Aligned_cols=190 Identities=20% Similarity=0.292 Sum_probs=136.9
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCC-CCCeeeecccceeec--ChhcchhHHHh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNV-VPNCKVDLGLQYITT--TPDFLSNHTDI 77 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~-~~~~~~d~g~~~~~~--~~~~~~~~~~~ 77 (365)
|++|+|||+|+|||+||+.|+++ .+|++||+++++||+..|...+. +.++.+|.|...+.. ||.+. ++
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-----hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~----~L 78 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-----HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLT----RL 78 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-----cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHH----HH
Confidence 46899999999999999999999 89999999999999999986432 235688888776654 44433 33
Q ss_pred hhhhhhcCc--------------c---------------ccc--------------------------------------
Q psy12489 78 YQPLLDEKL--------------L---------------EPF-------------------------------------- 90 (365)
Q Consensus 78 ~~~l~~~~~--------------~---------------~~~-------------------------------------- 90 (365)
++++..... + ..|
T Consensus 79 f~~iGv~t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~ 158 (447)
T COG2907 79 FKTIGVDTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLK 158 (447)
T ss_pred HHHcCCCCcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHH
Confidence 333321000 0 000
Q ss_pred ---------------------ccccc-----------------cccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEe
Q psy12489 91 ---------------------TANII-----------------GYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYN 132 (365)
Q Consensus 91 ---------------------~~~~~-----------------~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~ 132 (365)
..+.. |+..-.....+....+|...+++.|...+. .+|.++
T Consensus 159 ~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~~-~~i~t~ 237 (447)
T COG2907 159 QRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADIR-GRIETR 237 (447)
T ss_pred hcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhcccc-ceeecC
Confidence 00000 000001122234557788999999999877 899999
Q ss_pred eeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeEEEEecc
Q psy12489 133 TFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFD 208 (365)
Q Consensus 133 ~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~ 208 (365)
++|..|.+-. +++.+...+|++..+|.||+|+.+.+.+.+|.+.. ++.++.+..+.|.....+.....
T Consensus 238 ~~V~~l~rlP--dGv~l~~~~G~s~rFD~vViAth~dqAl~mL~e~s------p~e~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 238 TPVCRLRRLP--DGVVLVNADGESRRFDAVVIATHPDQALALLDEPS------PEERQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred CceeeeeeCC--CceEEecCCCCccccceeeeecChHHHHHhcCCCC------HHHHHHHHhhhhhhceeEEeecc
Confidence 9999999998 89999999999999999999999999999998754 34456889999997776554433
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=1e-17 Score=161.43 Aligned_cols=59 Identities=24% Similarity=0.432 Sum_probs=53.6
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeec
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITT 66 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~ 66 (365)
|+||+|||||+.||+||..|+++| ++|+||||++.+||+++|.... ++.+|.|+.++..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G----~~V~VlE~~~~~GG~a~t~e~~---Gf~fd~G~~~~~~ 61 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAG----LKVTVLEKNDRVGGRARTFELD---GFRFDTGPSWYLM 61 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCC----CEEEEEEecCCCCcceEEEecc---ceEeccCcceeec
Confidence 369999999999999999999998 9999999999999999998884 6899999866544
No 31
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=9e-15 Score=136.10 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=55.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeec-Chhc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITT-TPDF 70 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~-~~~~ 70 (365)
++|+|+|||+|||+||++|+++| ++|+|+|+++++||++.+.+.. ++...|+|.+.|.. |.+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g----~~vt~~ea~~~~GGk~~s~~~~--dg~~~E~glh~f~~~Y~n~ 64 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAG----YDVTLYEARDRLGGKVASWRDS--DGNHVEHGLHVFFGCYYNL 64 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC----CceEEEeccCccCceeeeeecC--CCCeeeeeeEEechhHHHH
Confidence 57999999999999999999998 9999999999999999998875 46789999998765 4443
No 32
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.59 E-value=8.5e-13 Score=124.31 Aligned_cols=303 Identities=16% Similarity=0.119 Sum_probs=151.0
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC-CCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA-RGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQ 79 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~-~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~ 79 (365)
++||+|||||++||++|..|+++| ++|+|+|+. ...-.. | ..+...+.-. ++++
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G----~~V~l~E~~~~~~~~~----------------~-r~~~l~~~~~----~~L~ 56 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG----LDVTLLERAPRELLER----------------G-RGIALSPNAL----RALE 56 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC----CcEEEEccCccccccC----------------c-eeeeecHhHH----HHHH
Confidence 469999999999999999999998 999999997 221100 0 0011111111 1222
Q ss_pred hhhh-cCccc----------cccccccccccc---CC-CcceEEcCCChHHHHHHHHh---hCCCceEEEeeeeEEeeec
Q psy12489 80 PLLD-EKLLE----------PFTANIIGYKSR---KK-NVTHYVTPQGSSSIVKYFLN---KSNIDEICYNTFLETMAKT 141 (365)
Q Consensus 80 ~l~~-~~~~~----------~~~~~~~~~~~~---~~-~~~~~~~~~g~~~l~~~l~~---~~g~~~i~~~~~V~~i~~~ 141 (365)
++.- +.+.. -+......+... .. ....+.. ....+.+.|.+ +.+.++++++++|+.++.+
T Consensus 57 ~lG~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~ 134 (387)
T COG0654 57 RLGLWDRLEALGVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVV--PRSDLLNALLEAARALPNVTLRFGAEVEAVEQD 134 (387)
T ss_pred HcCChhhhhhccCCceeeEEEecCCceeEEecccccCCCcceEEe--EhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc
Confidence 2221 11000 000000000000 01 1111111 12334333333 2343799999999999998
Q ss_pred CCCCcEEEEec-CCCeeecCEEEEcCChh-hHHHhhccccccccchHHHHHHhhcCCccceeEEEEeccCCCCCC-cceE
Q psy12489 142 DSTNQIEVTSK-EGKKGIFDIVVLSMPAP-QVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERP-FDIK 218 (365)
Q Consensus 142 ~~~~~~~v~~~-~g~~~~~d~vV~a~p~~-~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~-~~~~ 218 (365)
+ +.+.++.. +|+++.||.||.|-+.. .+.+.+.... .....|.. ..+.+.++.+.+.+ ....
T Consensus 135 ~--~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~------------~~~~~y~~-~~l~~~~~~~~~~~~~~~~ 199 (387)
T COG0654 135 G--DGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAE------------FSGRDYGQ-TALVANVEPEEPHEGRAGE 199 (387)
T ss_pred C--CceEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCC------------ccCCCCCc-eEEEEEeecCCCCCCeEEE
Confidence 8 88878777 99999999999997743 2333322011 11212332 22223333221221 2222
Q ss_pred EecCCCcEEEeeecCCCCCCCCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCCCCCCCceEeeecCCCCCC
Q psy12489 219 YFDDNEIIRYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPLPAETKLQTWKYSQV 298 (365)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~rw~~a~~ 298 (365)
++....++.++.... + ...++......-.......+ .+...+.+.+.++............+....|
T Consensus 200 ~~~~~~~~~~~p~~~---~----~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 266 (387)
T COG0654 200 RFTHAGPFALLPLPD---N----RSSVVWSLPPGPAEDLQGLS------DEEFLRELQRRLGERDPLGRVTLVSSRSAFP 266 (387)
T ss_pred EecCCCceEEEecCC---C----ceeEEEECChhhHHHHhcCC------HHHHHHHHHHhcCcccccceEEEcccccccc
Confidence 333333444443211 1 11222222222122222222 2344677777777432111122233333333
Q ss_pred cCCCCCcccceeecCCCeEEEeccccc---C--CCchhHHHHHHHHHHhhhhccch-hh-hhhhhhccCCCC
Q psy12489 299 VDPHRDKLGFMQFSAKPLVICIGDSYV---P--QSNFDGCIHSAKQTTGASMVGKH-WM-LGLLRYWENPTM 363 (365)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~aGd~~~---~--~~~~~gA~~SG~~aA~~l~~~~~-~~-~~~~~~~~~~~~ 363 (365)
.... ..... ..++++++||+.| | +-+++.|+..+...|+.|..... .. ..+|..|+..+.
T Consensus 267 l~~~--~a~~~---~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~ 333 (387)
T COG0654 267 LSLR--VAERY---RRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRR 333 (387)
T ss_pred ccch--hhhhe---ecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhh
Confidence 3211 00111 2267999999977 2 35999999999999998875322 11 668888887653
No 33
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.58 E-value=5.6e-13 Score=125.59 Aligned_cols=147 Identities=10% Similarity=0.164 Sum_probs=79.0
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHH--Hhhhh
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHT--DIYQP 80 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~--~~~~~ 80 (365)
||+|||||++|+++|+.|+++| ++|+|||+.+.++-+... ++..+..+. +...+.++ .+.++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G----~~v~v~Er~~~~~~~~~~----------~~~~~~~l~--~~~~~~l~~lGl~~~ 64 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSG----LKIALIEATPAEAAATPG----------FDNRVSALS--AASIRLLEKLGVWDK 64 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCC----CEEEEEeCCCccccCCCC----------CCcceeecC--HHHHHHHHHCCchhh
Confidence 7999999999999999999998 999999999765311000 000000011 11110000 01111
Q ss_pred hhh-cCc----cccccccccc---ccccC--CCcceE-EcCCChH-HHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEE
Q psy12489 81 LLD-EKL----LEPFTANIIG---YKSRK--KNVTHY-VTPQGSS-SIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIE 148 (365)
Q Consensus 81 l~~-~~~----~~~~~~~~~~---~~~~~--~~~~~~-~~~~g~~-~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~ 148 (365)
+.. .+. ..-|...-.. +.... .....+ ..+..+. .|.+.+. +.++++++++++|++++.++ +++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~~~~~v~~~~~v~~i~~~~--~~~~ 141 (385)
T TIGR01988 65 IEPDRAQPIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQ-EYPNVTLLCPARVVELPRHS--DHVE 141 (385)
T ss_pred hhhhcCCCceEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHH-hCCCcEEecCCeEEEEEecC--CeeE
Confidence 111 000 0011110000 00000 001112 2222222 2333332 33337899999999999887 8888
Q ss_pred EEecCCCeeecCEEEEcCCh
Q psy12489 149 VTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 149 v~~~~g~~~~~d~vV~a~p~ 168 (365)
+++.+|+++.+|.||.|.+.
T Consensus 142 v~~~~g~~~~~~~vi~adG~ 161 (385)
T TIGR01988 142 LTLDDGQQLRARLLVGADGA 161 (385)
T ss_pred EEECCCCEEEeeEEEEeCCC
Confidence 98889988999999999774
No 34
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.58 E-value=1.2e-14 Score=130.81 Aligned_cols=155 Identities=14% Similarity=0.218 Sum_probs=98.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecc---cceeecChhcchhHHHhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG---LQYITTTPDFLSNHTDIY 78 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g---~~~~~~~~~~~~~~~~~~ 78 (365)
.||+|||||+||++||..++++| .+|+|||+.+.+|-++.-.. +..+++.+- .++++.+|.-...++..+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G----~~V~lid~~~k~GrKil~sG---gGrCN~Tn~~~~~~~ls~~p~~~~fl~sal 76 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAG----RRVLLIDKGPKLGRKILMSG---GGRCNFTNSEAPDEFLSRNPGNGHFLKSAL 76 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcC----CEEEEEecCccccceeEecC---CCCccccccccHHHHHHhCCCcchHHHHHH
Confidence 59999999999999999999998 99999999999985543322 223433332 222333331111112222
Q ss_pred hhhhhcCcccccccccccccccCCC-cceEEcCCChHHHHHHHHhh---CCCceEEEeeeeEEeeecCCCCcEEEEecCC
Q psy12489 79 QPLLDEKLLEPFTANIIGYKSRKKN-VTHYVTPQGSSSIVKYFLNK---SNIDEICYNTFLETMAKTDSTNQIEVTSKEG 154 (365)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~l~~~l~~~---~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g 154 (365)
.++...++ ..|... .|+...... ...|.....-..+++.|.++ .| ++|+++++|.+|+.++ .+..+.+.+|
T Consensus 77 ~~ft~~d~-i~~~e~-~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~g-V~i~~~~~v~~v~~~~--~~f~l~t~~g 151 (408)
T COG2081 77 ARFTPEDF-IDWVEG-LGIALKEEDLGRMFPDSDKASPIVDALLKELEALG-VTIRTRSRVSSVEKDD--SGFRLDTSSG 151 (408)
T ss_pred HhCCHHHH-HHHHHh-cCCeeEEccCceecCCccchHHHHHHHHHHHHHcC-cEEEecceEEeEEecC--ceEEEEcCCC
Confidence 22222221 112110 111111122 22333325556777777553 47 9999999999999988 8899999999
Q ss_pred CeeecCEEEEcCCh
Q psy12489 155 KKGIFDIVVLSMPA 168 (365)
Q Consensus 155 ~~~~~d~vV~a~p~ 168 (365)
++++||.+|+|++.
T Consensus 152 ~~i~~d~lilAtGG 165 (408)
T COG2081 152 ETVKCDSLILATGG 165 (408)
T ss_pred CEEEccEEEEecCC
Confidence 89999999999873
No 35
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.58 E-value=1.1e-12 Score=123.59 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=40.1
Q ss_pred HHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChh
Q psy12489 118 KYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 118 ~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
+.+.+..+ ++++++++|++++.++ +++.+++.+|.+++||.||.|.+..
T Consensus 118 ~~~~~~~~-i~i~~~~~v~~~~~~~--~~~~v~~~~g~~~~~~lvIgADG~~ 166 (384)
T PRK08849 118 QQFAQYPN-LTLMCPEKLADLEFSA--EGNRVTLESGAEIEAKWVIGADGAN 166 (384)
T ss_pred HHHHhCCC-eEEECCCceeEEEEcC--CeEEEEECCCCEEEeeEEEEecCCC
Confidence 33333334 8999999999999888 8888999999999999999998753
No 36
>PRK05868 hypothetical protein; Validated
Probab=99.57 E-value=9e-13 Score=123.37 Aligned_cols=141 Identities=16% Similarity=0.232 Sum_probs=80.1
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHH--hh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTD--IY 78 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~--~~ 78 (365)
|+||+|||||++||++|+.|+++| ++|+|||+.+.+... +..+++... ..+.+++ +.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G----~~v~viE~~~~~~~~----------g~~i~~~~~-------a~~~L~~lGl~ 59 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHG----YSVTMVERHPGLRPG----------GQAIDVRGP-------ALDVLERMGLL 59 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCCCCCC----------ceeeeeCch-------HHHHHHhcCCH
Confidence 899999999999999999999998 999999998654210 001111111 0100000 11
Q ss_pred hhhhhcCcc-c--ccccccccccc-cC---C------CcceEEcCCChHHHHHHHHhh--CCCceEEEeeeeEEeeecCC
Q psy12489 79 QPLLDEKLL-E--PFTANIIGYKS-RK---K------NVTHYVTPQGSSSIVKYFLNK--SNIDEICYNTFLETMAKTDS 143 (365)
Q Consensus 79 ~~l~~~~~~-~--~~~~~~~~~~~-~~---~------~~~~~~~~~g~~~l~~~l~~~--~g~~~i~~~~~V~~i~~~~~ 143 (365)
+.+...+.. . .+... .+... .. . ....+.. --..|.+.|.+. .+ ++++++++|++++.++
T Consensus 60 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~i--~R~~L~~~l~~~~~~~-v~i~~~~~v~~i~~~~- 134 (372)
T PRK05868 60 AAAQEHKTRIRGASFVDR-DGNELFRDTESTPTGGPVNSPDIEL--LRDDLVELLYGATQPS-VEYLFDDSISTLQDDG- 134 (372)
T ss_pred HHHHhhccCccceEEEeC-CCCEEeecccccccCCCCCCceEEE--EHHHHHHHHHHhccCC-cEEEeCCEEEEEEecC-
Confidence 111111100 0 00000 00000 00 0 0001100 012344444332 25 8899999999998877
Q ss_pred CCcEEEEecCCCeeecCEEEEcCCh
Q psy12489 144 TNQIEVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 144 ~~~~~v~~~~g~~~~~d~vV~a~p~ 168 (365)
+++.+++.+|+++++|.||.|-+.
T Consensus 135 -~~v~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 135 -DSVRVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred -CeEEEEECCCCeEEeCEEEECCCC
Confidence 889999999999999999999774
No 37
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.57 E-value=8.3e-13 Score=124.74 Aligned_cols=147 Identities=10% Similarity=0.208 Sum_probs=79.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHH--Hhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHT--DIYQ 79 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~--~~~~ 79 (365)
.||+|||||++|+++|+.|+++| ++|+|+|+.+.+..... . . +...+...+...+.++ .+.+
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G----~~v~liE~~~~~~~~~~----~--~------~~r~~~l~~~~~~~l~~lGl~~ 70 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAG----LSVALVEGREPPRWQAD----Q--P------DLRVYAFAADNAALLDRLGVWP 70 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCC----CEEEEEeCCCCcccccC----C--C------CCEEEEecHHHHHHHHHCCchh
Confidence 59999999999999999999998 99999999864321100 0 0 0010111111110000 0111
Q ss_pred hhhhcCc-----cccccccc---cccccc--CCCcceEEc-CCChH-HHHHHHHhhCCCceEEEeeeeEEeeecCCCCcE
Q psy12489 80 PLLDEKL-----LEPFTANI---IGYKSR--KKNVTHYVT-PQGSS-SIVKYFLNKSNIDEICYNTFLETMAKTDSTNQI 147 (365)
Q Consensus 80 ~l~~~~~-----~~~~~~~~---~~~~~~--~~~~~~~~~-~~g~~-~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~ 147 (365)
.+...+. ...|.... ..+... ......|.. ...+. .+.+.+ ++.| ++++++++|++++.++ +++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~-~~~g-v~i~~~~~v~~i~~~~--~~v 146 (392)
T PRK08773 71 AVRAARAQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAAL-HAAG-VQLHCPARVVALEQDA--DRV 146 (392)
T ss_pred hhhHhhCCcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHH-HhCC-CEEEcCCeEEEEEecC--CeE
Confidence 1111000 01111100 000000 000111221 11222 223322 3347 8999999999999887 788
Q ss_pred EEEecCCCeeecCEEEEcCCh
Q psy12489 148 EVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 148 ~v~~~~g~~~~~d~vV~a~p~ 168 (365)
.+++.+|+++.+|.||.|.+.
T Consensus 147 ~v~~~~g~~~~a~~vV~AdG~ 167 (392)
T PRK08773 147 RLRLDDGRRLEAALAIAADGA 167 (392)
T ss_pred EEEECCCCEEEeCEEEEecCC
Confidence 888888888999999999875
No 38
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.57 E-value=9.6e-13 Score=124.81 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=37.9
Q ss_pred hCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCCh
Q psy12489 123 KSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 123 ~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~ 168 (365)
+.| ++++++++|++++.++ +.+.+++.+|.++.||.||.|.+.
T Consensus 123 ~~g-v~v~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vI~AdG~ 165 (403)
T PRK07333 123 ALG-IDLREATSVTDFETRD--EGVTVTLSDGSVLEARLLVAADGA 165 (403)
T ss_pred hCC-CEEEcCCEEEEEEEcC--CEEEEEECCCCEEEeCEEEEcCCC
Confidence 347 8999999999999887 888888888888999999999875
No 39
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.56 E-value=9.1e-13 Score=122.53 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHHHHHHh---hCCCceEEEeeeeEEeeecCCCCcEE-EEecCCCeeecCEEEEcCChhhHHHhhcc
Q psy12489 114 SSIVKYFLN---KSNIDEICYNTFLETMAKTDSTNQIE-VTSKEGKKGIFDIVVLSMPAPQVTDLFNR 177 (365)
Q Consensus 114 ~~l~~~l~~---~~g~~~i~~~~~V~~i~~~~~~~~~~-v~~~~g~~~~~d~vV~a~p~~~~~~ll~~ 177 (365)
..+++.|.+ +.| ++|+.+++|++|+.++ ++|. |.+.+|+ +.+|+||+|++.. +..++..
T Consensus 147 ~~l~~~l~~~~~~~G-v~i~~~~~V~~i~~~~--~~v~gv~~~~g~-i~ad~vV~a~G~~-s~~l~~~ 209 (358)
T PF01266_consen 147 RRLIQALAAEAQRAG-VEIRTGTEVTSIDVDG--GRVTGVRTSDGE-IRADRVVLAAGAW-SPQLLPL 209 (358)
T ss_dssp HHHHHHHHHHHHHTT--EEEESEEEEEEEEET--TEEEEEEETTEE-EEECEEEE--GGG-HHHHHHT
T ss_pred cchhhhhHHHHHHhh-hhccccccccchhhcc--cccccccccccc-cccceeEeccccc-ceeeeec
Confidence 445544443 458 9999999999999998 8887 9999997 9999999999853 4444443
No 40
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.55 E-value=1.6e-12 Score=122.39 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=37.4
Q ss_pred CCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChh
Q psy12489 125 NIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 125 g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
+ ++++++++|++++.++ +++.+++.+|.++.||.||.|.+..
T Consensus 120 g-v~~~~~~~v~~i~~~~--~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 120 N-IQLYCPARYKEIIRNQ--DYVRVTLDNGQQLRAKLLIAADGAN 161 (382)
T ss_pred C-cEEEcCCeEEEEEEcC--CeEEEEECCCCEEEeeEEEEecCCC
Confidence 6 8999999999998887 7888888888889999999998854
No 41
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.55 E-value=5.9e-12 Score=114.00 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=78.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.||+|||||++||++|+.|+++| ++|+|+|+.+.++......... +.. ...+.. + . .......
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g----~~v~vie~~~~~~~~~~~~~~~--~~~-----~~~l~~-~--~---~~~~~~~ 63 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKG----LRVLLLEKKSFPRYKPCGGALS--PRV-----LEELDL-P--L---ELIVNLV 63 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CeEEEEeccCCCCcccccCccC--HhH-----HHHhcC-C--c---hhhhhhe
Confidence 48999999999999999999998 9999999987665321111100 000 000000 0 0 0000000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecC-CCeeecC
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKE-GKKGIFD 160 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~-g~~~~~d 160 (365)
. ......+....... ...........+..+...+...+++.| ++++++++|+++...+ +++.+...+ +.++++|
T Consensus 64 ~-~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~l~~~~~~~g-v~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~a~ 138 (295)
T TIGR02032 64 R-GARFFSPNGDSVEI-PIETELAYVIDRDAFDEQLAERAQEAG-AELRLGTTVLDVEIHD--DRVVVIVRGGEGTVTAK 138 (295)
T ss_pred e-eEEEEcCCCcEEEe-ccCCCcEEEEEHHHHHHHHHHHHHHcC-CEEEeCcEEeeEEEeC--CEEEEEEcCccEEEEeC
Confidence 0 00000000000000 000111112233334444443444557 9999999999998877 666665443 3578999
Q ss_pred EEEEcCChh
Q psy12489 161 IVVLSMPAP 169 (365)
Q Consensus 161 ~vV~a~p~~ 169 (365)
.||.|.+..
T Consensus 139 ~vv~a~G~~ 147 (295)
T TIGR02032 139 IVIGADGSR 147 (295)
T ss_pred EEEECCCcc
Confidence 999999853
No 42
>PRK06847 hypothetical protein; Provisional
Probab=99.54 E-value=5.9e-13 Score=125.00 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=79.8
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHH--Hhh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHT--DIY 78 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~--~~~ 78 (365)
|+||+|||||++||++|+.|+++| ++|+|||++..+... . .+..+ .+...+.++ .++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g----~~v~v~E~~~~~~~~------g--~g~~l---------~~~~~~~l~~~gl~ 62 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAG----IAVDLVEIDPEWRVY------G--AGITL---------QGNALRALRELGVL 62 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCC----CCEEEEecCCCCccC------C--ceeee---------cHHHHHHHHHcCCH
Confidence 469999999999999999999998 999999998654211 0 01111 011110000 011
Q ss_pred hhhhhcCcc----cccccc---cccccccCC-----CcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCc
Q psy12489 79 QPLLDEKLL----EPFTAN---IIGYKSRKK-----NVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQ 146 (365)
Q Consensus 79 ~~l~~~~~~----~~~~~~---~~~~~~~~~-----~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~ 146 (365)
+.+...+.. ..+... ...+..... .......+..+...+...+++.+ ++++++++|++++.++ ++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~~~--~~ 139 (375)
T PRK06847 63 DECLEAGFGFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAG-ADVRLGTTVTAIEQDD--DG 139 (375)
T ss_pred HHHHHhCCCccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhC-CEEEeCCEEEEEEEcC--CE
Confidence 111111110 001000 000000000 00000111122222322333447 8999999999998877 77
Q ss_pred EEEEecCCCeeecCEEEEcCCh
Q psy12489 147 IEVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 147 ~~v~~~~g~~~~~d~vV~a~p~ 168 (365)
+.+.+.+|+++.+|.||.|.+.
T Consensus 140 ~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 140 VTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEEEcCCCEEEcCEEEECcCC
Confidence 8888888988999999999875
No 43
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.54 E-value=2.1e-11 Score=114.68 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=36.5
Q ss_pred HhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCCh
Q psy12489 121 LNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 121 ~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~ 168 (365)
++..| ++++.+++|++|+.++ +.+.|.+.++ ++.+|+||+|++.
T Consensus 155 ~~~~g-~~~~~~~~V~~i~~~~--~~~~v~~~~~-~i~a~~vV~aaG~ 198 (380)
T TIGR01377 155 AEAHG-ATVRDGTKVVEIEPTE--LLVTVKTTKG-SYQANKLVVTAGA 198 (380)
T ss_pred HHHcC-CEEECCCeEEEEEecC--CeEEEEeCCC-EEEeCEEEEecCc
Confidence 33457 9999999999998877 7788877665 7899999999985
No 44
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.53 E-value=2.1e-12 Score=122.99 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=32.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
.||+|||||++|+++|..|+++| ++|+|||+.+..
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G----~~v~v~E~~~~~ 53 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSG----LRIALIEAQPAE 53 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCC----CEEEEEecCCcc
Confidence 58999999999999999999998 999999998754
No 45
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.53 E-value=8e-12 Score=118.76 Aligned_cols=38 Identities=32% Similarity=0.572 Sum_probs=34.9
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
|.||+|||||++|+++|++|+++| .+|+|+||++.+|+
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g----~~V~vle~~~~~~~ 38 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRG----YQVTVFDRHRYAAM 38 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC----CeEEEEeCCCCCCc
Confidence 889999999999999999999997 99999999875543
No 46
>PRK07236 hypothetical protein; Provisional
Probab=99.53 E-value=4.7e-12 Score=119.32 Aligned_cols=139 Identities=11% Similarity=0.174 Sum_probs=83.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.+|+|||||++||++|+.|+++| ++|+|||+.+..- . .. |. .+...++.. +.++.+
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G----~~v~v~E~~~~~~----~-~~----------g~-gi~l~~~~~----~~l~~l 62 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAG----WDVDVFERSPTEL----D-GR----------GA-GIVLQPELL----RALAEA 62 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC----CCEEEEecCCCCc----C-CC----------Cc-eeEeCHHHH----HHHHHc
Confidence 48999999999999999999998 9999999975321 0 00 00 011112211 222222
Q ss_pred hhcCcc---ccccc----ccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCC
Q psy12489 82 LDEKLL---EPFTA----NIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEG 154 (365)
Q Consensus 82 ~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g 154 (365)
.-.... ..... ...+-......... ...+...+.+.|.+.++..+++++++|++++.++ +++.+++.+|
T Consensus 63 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g 138 (386)
T PRK07236 63 GVALPADIGVPSRERIYLDRDGRVVQRRPMPQ--TQTSWNVLYRALRAAFPAERYHLGETLVGFEQDG--DRVTARFADG 138 (386)
T ss_pred CCCcccccccCccceEEEeCCCCEeeccCCCc--cccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecC--CeEEEEECCC
Confidence 110000 00000 00000000000000 0123456777777766546799999999999887 8899999999
Q ss_pred CeeecCEEEEcCCh
Q psy12489 155 KKGIFDIVVLSMPA 168 (365)
Q Consensus 155 ~~~~~d~vV~a~p~ 168 (365)
+++.+|.||.|-+.
T Consensus 139 ~~~~ad~vIgADG~ 152 (386)
T PRK07236 139 RRETADLLVGADGG 152 (386)
T ss_pred CEEEeCEEEECCCC
Confidence 99999999999664
No 47
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.53 E-value=1.6e-12 Score=122.67 Aligned_cols=200 Identities=9% Similarity=0.084 Sum_probs=100.9
Q ss_pred ceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhh-HHHhhccccccccchHHHHHHhhcCCccceeEEEE
Q psy12489 127 DEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQ-VTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGM 205 (365)
Q Consensus 127 ~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~-~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l 205 (365)
...+++++|++++.++ +++.|++.+|+++.+|.||.|.+... +.+.++ +. .....|.. ..+.+
T Consensus 126 ~~~~~~~~v~~i~~~~--~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g-~~------------~~~~~~~~-~~~~~ 189 (388)
T PRK07494 126 NITRFGDEAESVRPRE--DEVTVTLADGTTLSARLVVGADGRNSPVREAAG-IG------------VRTWSYPQ-KALVL 189 (388)
T ss_pred CcEEECCeeEEEEEcC--CeEEEEECCCCEEEEeEEEEecCCCchhHHhcC-CC------------ceecCCCC-EEEEE
Confidence 3448999999998887 88999888888899999999987532 222211 11 01112221 12223
Q ss_pred eccCCCCCC-cceEEecCCCcEEEeeecCCCCCCCCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCCCCCC
Q psy12489 206 FFDKQFERP-FDIKYFDDNEIIRYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPL 284 (365)
Q Consensus 206 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~ 284 (365)
.++.+.... ....++....++.++.. ++ +...++.........+..+.++++ +.+.+.+.+..+++...
T Consensus 190 ~v~~~~~~~~~~~~~~~~~g~~~~~Pl----~~---~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~- 259 (388)
T PRK07494 190 NFTHSRPHQNVSTEFHTEGGPFTQVPL----PG---RRSSLVWVVRPAEAERLLALSDAA--LSAAIEERMQSMLGKLT- 259 (388)
T ss_pred EEeccCCCCCEEEEEeCCCCcEEEEEC----CC---CcEEEEEECCHHHHHHHHcCCHHH--HHHHHHHHHhhhcCCeE-
Confidence 333222111 11112222223333211 11 011233333332222222333344 55555554554443211
Q ss_pred CceEeeecCCCCCCcCCCCCcccceeecCCCeEEEeccccc---C--CCchhHHHHHHHHHHhhhhccchh--hhhhhhh
Q psy12489 285 PAETKLQTWKYSQVVDPHRDKLGFMQFSAKPLVICIGDSYV---P--QSNFDGCIHSAKQTTGASMVGKHW--MLGLLRY 357 (365)
Q Consensus 285 ~~~~~~~rw~~a~~~~~~~~~~~~~~~~~~~~l~~aGd~~~---~--~~~~~gA~~SG~~aA~~l~~~~~~--~~~~~~~ 357 (365)
...+....|.... .. .....++++++||..+ | +-+++.|++++...|+.|.....+ ....|+.
T Consensus 260 -----~~~~~~~~~l~~~---~~--~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~ 329 (388)
T PRK07494 260 -----LEPGRQAWPLSGQ---VA--HRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAA 329 (388)
T ss_pred -----EccCCcEeechHH---HH--HhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 0011111121110 00 1112368999999977 2 359999999999999998753222 3457888
Q ss_pred ccCCC
Q psy12489 358 WENPT 362 (365)
Q Consensus 358 ~~~~~ 362 (365)
|+..+
T Consensus 330 Y~~~R 334 (388)
T PRK07494 330 YDRAR 334 (388)
T ss_pred HHHHH
Confidence 87765
No 48
>PRK09126 hypothetical protein; Provisional
Probab=99.52 E-value=1.7e-12 Score=122.61 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=40.7
Q ss_pred HHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCCh
Q psy12489 116 IVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 116 l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~ 168 (365)
+.+.+.+..| ++|+++++|++++.++ +.+.|.+.+|+++.+|.||.|.+.
T Consensus 116 l~~~~~~~~g-~~i~~~~~v~~~~~~~--~~~~v~~~~g~~~~a~~vI~AdG~ 165 (392)
T PRK09126 116 AYEAVSQQDG-IELLTGTRVTAVRTDD--DGAQVTLANGRRLTARLLVAADSR 165 (392)
T ss_pred HHHHHhhCCC-cEEEcCCeEEEEEEcC--CeEEEEEcCCCEEEeCEEEEeCCC
Confidence 3444444446 8999999999998877 778888888889999999999875
No 49
>PRK08013 oxidoreductase; Provisional
Probab=99.52 E-value=6.9e-12 Score=118.73 Aligned_cols=150 Identities=14% Similarity=0.092 Sum_probs=80.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHH--hhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTD--IYQ 79 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~--~~~ 79 (365)
.||+|||||++|+++|+.|+++| ++|+|+|+.+.+.-. .. ...+..+..+. +.-.+.+++ +.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G----~~v~viE~~~~~~~~-----~g----~~~~~r~~~l~--~~s~~~L~~lGl~~ 68 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSG----LRVAVLEQRVPEPLA-----AD----APPALRVSAIN--AASEKLLTRLGVWQ 68 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCC----CEEEEEeCCCCcccc-----cC----CCCCceeeecc--hhHHHHHHHcCCch
Confidence 59999999999999999999998 999999998754210 00 00011111111 111100100 111
Q ss_pred hhhhcCc-----ccccccc-ccccccc--CCCcc--eE-EcCCChHH-HHHHHHhhCCCceEEEeeeeEEeeecCCCCcE
Q psy12489 80 PLLDEKL-----LEPFTAN-IIGYKSR--KKNVT--HY-VTPQGSSS-IVKYFLNKSNIDEICYNTFLETMAKTDSTNQI 147 (365)
Q Consensus 80 ~l~~~~~-----~~~~~~~-~~~~~~~--~~~~~--~~-~~~~g~~~-l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~ 147 (365)
.+...+. ...|... ....... ....+ .| ..+.-+.. |.+.+.+..+ ++++++++|++++.++ +.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~-v~i~~~~~v~~i~~~~--~~v 145 (400)
T PRK08013 69 DILARRASCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSD-ITLLAPAELQQVAWGE--NEA 145 (400)
T ss_pred hhhhhcCccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCC-cEEEcCCeeEEEEecC--CeE
Confidence 1111100 0111110 0000000 00010 11 11222222 2233322224 8999999999998887 788
Q ss_pred EEEecCCCeeecCEEEEcCChh
Q psy12489 148 EVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 148 ~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
.+++.+|+++++|.||.|-+..
T Consensus 146 ~v~~~~g~~i~a~lvVgADG~~ 167 (400)
T PRK08013 146 FLTLKDGSMLTARLVVGADGAN 167 (400)
T ss_pred EEEEcCCCEEEeeEEEEeCCCC
Confidence 8888889899999999998743
No 50
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.52 E-value=4.2e-12 Score=119.12 Aligned_cols=147 Identities=16% Similarity=0.183 Sum_probs=78.2
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHH--hh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTD--IY 78 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~--~~ 78 (365)
|.||+|||||++|+++|+.|++.| ++|+|+|+.+..... . ..+..+ +...+.-.+.++. ++
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G----~~v~l~E~~~~~~~~-----~------~~~~r~--~~l~~~~~~~L~~lGl~ 63 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKG----IKTTIFESKSVKSPE-----F------FKDIRT--TALTPHSKNFLFSIDIW 63 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCC----CeEEEecCCCCCCCc-----c------CcCceE--EEeCHHHHHHHHHCCcH
Confidence 789999999999999999999998 999999987422100 0 000001 1111111111101 11
Q ss_pred hhhhhcCc----ccccccccc---cccccCCCcceEEcCCChHHHHHHHHh---hCCCceEEEeeeeEEeeecCCCCcEE
Q psy12489 79 QPLLDEKL----LEPFTANII---GYKSRKKNVTHYVTPQGSSSIVKYFLN---KSNIDEICYNTFLETMAKTDSTNQIE 148 (365)
Q Consensus 79 ~~l~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~l~~~l~~---~~g~~~i~~~~~V~~i~~~~~~~~~~ 148 (365)
+.+...+. ...|..... .+.........|.. ....|.+.|.+ +.+.++++++++|+++..++ +++.
T Consensus 64 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v--~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~ 139 (374)
T PRK06617 64 EELEKFVAEMQDIYVVDNKASEILDLRNDADAVLGYVV--KNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSI 139 (374)
T ss_pred HHHHhhcCCCcEEEEEECCCceEEEecCCCCCCcEEEE--EHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEE
Confidence 11111100 001110000 00000000011221 11334333333 22327889999999998887 7888
Q ss_pred EEecCCCeeecCEEEEcCChh
Q psy12489 149 VTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 149 v~~~~g~~~~~d~vV~a~p~~ 169 (365)
+++.++ ++++|.||.|-+..
T Consensus 140 v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 140 IKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred EEEcCC-EEeeCEEEEeCCCC
Confidence 888766 89999999997753
No 51
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.50 E-value=3.9e-12 Score=120.67 Aligned_cols=43 Identities=23% Similarity=0.204 Sum_probs=38.0
Q ss_pred CCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChh
Q psy12489 124 SNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 124 ~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
.+ ++++++++|++++.++ ++|.|++.+|+++++|.||.|.+..
T Consensus 125 ~g-v~v~~~~~v~~i~~~~--~~v~v~~~~g~~~~a~~vVgAdG~~ 167 (405)
T PRK05714 125 SD-IGLLANARLEQMRRSG--DDWLLTLADGRQLRAPLVVAADGAN 167 (405)
T ss_pred CC-CEEEcCCEEEEEEEcC--CeEEEEECCCCEEEeCEEEEecCCC
Confidence 46 8999999999999888 8898988888889999999998753
No 52
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.50 E-value=3.9e-11 Score=112.73 Aligned_cols=191 Identities=14% Similarity=0.094 Sum_probs=97.0
Q ss_pred hCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCccceeE
Q psy12489 123 KSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYA 202 (365)
Q Consensus 123 ~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~ 202 (365)
+.| ++++++++|++++.++ +++.|.+.+| ++.+|.||+|++.. +..++... .++..+...
T Consensus 161 ~~g-v~i~~~~~v~~i~~~~--~~~~v~~~~g-~~~a~~vV~A~G~~-~~~l~~~~---------------~~~i~~~~~ 220 (376)
T PRK11259 161 EAG-AELLFNEPVTAIEADG--DGVTVTTADG-TYEAKKLVVSAGAW-VKDLLPPL---------------ELPLTPVRQ 220 (376)
T ss_pred HCC-CEEECCCEEEEEEeeC--CeEEEEeCCC-EEEeeEEEEecCcc-hhhhcccc---------------cCCceEEEE
Confidence 347 9999999999999877 7788888777 78999999999853 33443321 122223322
Q ss_pred EEEeccCCCC----CCcceEE-ecCCCcEEEeeecCCCCCCCCCCceEEEEeChh--h--hhhhcCC--CCchhhHHHHH
Q psy12489 203 FGMFFDKQFE----RPFDIKY-FDDNEIIRYISFDNVKRNRPDEPISVCVHTTTQ--Y--YNSFLDS--ETPRNVIEREL 271 (365)
Q Consensus 203 v~l~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~--~~e~~~~~~~~ 271 (365)
.++.++.+.. ..+.... ...+....++ . |.. ++..+.+..... + .....+. .+++ ..+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~-~----p~~--~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~--~~~~l 291 (376)
T PRK11259 221 VLAWFQADGRYSEPNRFPAFIWEVPDGDQYYG-F----PAE--NGPGLKIGKHNGGQEITSPDERDRFVTVAE--DGAEL 291 (376)
T ss_pred EEEEEecCCccCCccCCCEEEEecCCCceeEe-c----cCC--CCCceEEEECCCCCCCCChhhccCCCCcHH--HHHHH
Confidence 2233332110 0011111 0011111111 0 100 111133322221 0 0111111 1233 67888
Q ss_pred HHHHHhHCCCCCCCceEeeecCCCCCCcCCCCCcccceee-cCCCeEEEecccccCCCchhHHHHHHHHHHhhhhccchh
Q psy12489 272 LDLIRKMFPSWPLPAETKLQTWKYSQVVDPHRDKLGFMQF-SAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMVGKHW 350 (365)
Q Consensus 272 ~~~l~~~~~~~~~~~~~~~~rw~~a~~~~~~~~~~~~~~~-~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~~~~~ 350 (365)
++.+.++||.... ..+.|....+..+ +....+.. +..++++++.-+. +-++-.|-..|+.+|+.|+.++.+
T Consensus 292 ~~~~~~~~P~~~~----~~~~~~g~~~~t~--D~~P~ig~~~~~~gl~~~~G~~--g~G~~~ap~~g~~la~li~~~~~~ 363 (376)
T PRK11259 292 RPFLRNYLPGVGP----CLRGAACTYTNTP--DEHFIIDTLPGHPNVLVASGCS--GHGFKFASVLGEILADLAQDGTSD 363 (376)
T ss_pred HHHHHHHCCCCCc----cccceEEecccCC--CCCceeecCCCCCCEEEEeccc--chhhhccHHHHHHHHHHHhcCCCC
Confidence 8889999986543 2233443333221 11112221 2345777774222 347888889999999999876644
No 53
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.50 E-value=5.8e-12 Score=119.48 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=40.0
Q ss_pred HHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCCh
Q psy12489 116 IVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 116 l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~ 168 (365)
|.+.+.+..+ ++++++++|++++.++ +.+.|++.+|++++||.||.|.+.
T Consensus 117 L~~~~~~~~~-v~v~~~~~v~~i~~~~--~~~~v~~~~g~~~~a~lvIgADG~ 166 (405)
T PRK08850 117 LLEQVQKQDN-VTLLMPARCQSIAVGE--SEAWLTLDNGQALTAKLVVGADGA 166 (405)
T ss_pred HHHHHhcCCC-eEEEcCCeeEEEEeeC--CeEEEEECCCCEEEeCEEEEeCCC
Confidence 3333333225 8999999999998877 788888888989999999999875
No 54
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.50 E-value=6.5e-12 Score=118.59 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=85.4
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQP 80 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~ 80 (365)
|.||+|||||+||++||+.|+++| ++|+|||+...+|.+..... .........+.+ .+..+ +..
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G----~~VlvlEk~~~~G~k~~~~~------~~~~~~l~~l~~--~~~~~----i~~ 66 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAG----LDVLVLEKGSEPGAKPCCGG------GLSPRALEELIP--DFDEE----IER 66 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcC----CeEEEEecCCCCCCCccccc------eechhhHHHhCC--Ccchh----hhe
Confidence 369999999999999999999998 99999999998885422200 000000000000 00000 000
Q ss_pred hhhcCcccccccccccccccCC-CcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecC-CCeee
Q psy12489 81 LLDEKLLEPFTANIIGYKSRKK-NVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKE-GKKGI 158 (365)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~-g~~~~ 158 (365)
......+ +.. ......... .......+..+.+.+...+++.| .+++.+++|..+..++ +++.+.... +.+++
T Consensus 67 ~v~~~~~--~~~-~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aG-ae~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~ 140 (396)
T COG0644 67 KVTGARI--YFP-GEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAG-AELYPGTRVTGVIRED--DGVVVGVRAGDDEVR 140 (396)
T ss_pred eeeeeEE--Eec-CCceEEecCCCceEEEEhHHhhHHHHHHHHHcC-CEEEeceEEEEEEEeC--CcEEEEEEcCCEEEE
Confidence 0000000 000 000000001 11222334556666666677778 9999999999999888 676544433 36789
Q ss_pred cCEEEEcCChh
Q psy12489 159 FDIVVLSMPAP 169 (365)
Q Consensus 159 ~d~vV~a~p~~ 169 (365)
++.||.|.+..
T Consensus 141 a~~vI~AdG~~ 151 (396)
T COG0644 141 AKVVIDADGVN 151 (396)
T ss_pred cCEEEECCCcc
Confidence 99999998753
No 55
>PRK07045 putative monooxygenase; Reviewed
Probab=99.49 E-value=6.6e-12 Score=118.44 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=35.8
Q ss_pred CCCceEEEeeeeEEeeecCCCCc--EEEEecCCCeeecCEEEEcCChh
Q psy12489 124 SNIDEICYNTFLETMAKTDSTNQ--IEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 124 ~g~~~i~~~~~V~~i~~~~~~~~--~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
.+ ++++++++|++++.++ ++ +.|++.+|+++.+|.||.|.+..
T Consensus 120 ~g-v~i~~~~~v~~i~~~~--~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 120 PN-VRLRFETSIERIERDA--DGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred CC-eeEEeCCEEEEEEECC--CCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 35 8999999999998876 44 46888888899999999998753
No 56
>PRK06753 hypothetical protein; Provisional
Probab=99.49 E-value=7.3e-12 Score=117.53 Aligned_cols=140 Identities=12% Similarity=0.228 Sum_probs=81.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHH--Hhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHT--DIYQ 79 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~--~~~~ 79 (365)
+||+|||||++||++|+.|+++| ++|+|||+.+.+.-. . .+ +.+ .++..+.++ .+.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g----~~v~v~E~~~~~~~~------g--~g--i~l-------~~~~~~~L~~~gl~~ 59 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG----HEVKVFEKNESVKEV------G--AG--IGI-------GDNVIKKLGNHDLAK 59 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC----CcEEEEecCCccccc------c--cc--eee-------ChHHHHHHHhcChHH
Confidence 47999999999999999999998 999999998765311 0 01 111 111111110 0111
Q ss_pred hhhhcCcc----ccccccccccc-c---cCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEe
Q psy12489 80 PLLDEKLL----EPFTANIIGYK-S---RKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTS 151 (365)
Q Consensus 80 ~l~~~~~~----~~~~~~~~~~~-~---~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~ 151 (365)
.+...+.. ..+.. .+.. . .......+. -....+.+.|.+.+...+|+++++|++|+.++ +++.+++
T Consensus 60 ~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~--i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~ 133 (373)
T PRK06753 60 GIKNAGQILSTMNLLDD--KGTLLNKVKLKSNTLNVT--LHRQTLIDIIKSYVKEDAIFTGKEVTKIENET--DKVTIHF 133 (373)
T ss_pred HHHhcCCcccceeEEcC--CCCEEeecccccCCcccc--ccHHHHHHHHHHhCCCceEEECCEEEEEEecC--CcEEEEE
Confidence 11111110 00100 0000 0 000001111 11245666666654436799999999999877 8899999
Q ss_pred cCCCeeecCEEEEcCCh
Q psy12489 152 KEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 152 ~~g~~~~~d~vV~a~p~ 168 (365)
.+|+++.+|.||.|-+.
T Consensus 134 ~~g~~~~~~~vigadG~ 150 (373)
T PRK06753 134 ADGESEAFDLCIGADGI 150 (373)
T ss_pred CCCCEEecCEEEECCCc
Confidence 99988999999999874
No 57
>PRK06184 hypothetical protein; Provisional
Probab=99.49 E-value=1.5e-11 Score=119.87 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=79.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCC--ccceeecCCCCCCeeeecccceeecChhcchhHH--Hh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPG--GRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHT--DI 77 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~g--gr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~--~~ 77 (365)
.||+|||||++||++|+.|+++| ++|+|+|+.+.+. ++... + .+...+.++ .+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~G----i~v~viE~~~~~~~~~ra~~-----------------l--~~~~~e~l~~lGl 60 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRG----VSFRLIEKAPEPFPGSRGKG-----------------I--QPRTQEVFDDLGV 60 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC----CcEEEEeCCCCCCcCcccee-----------------e--cHHHHHHHHHcCc
Confidence 59999999999999999999998 9999999986552 11110 0 011111000 01
Q ss_pred hhhhhhcCcc----cccccc--cccccc--c-----CCC-cceE-EcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecC
Q psy12489 78 YQPLLDEKLL----EPFTAN--IIGYKS--R-----KKN-VTHY-VTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTD 142 (365)
Q Consensus 78 ~~~l~~~~~~----~~~~~~--~~~~~~--~-----~~~-~~~~-~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~ 142 (365)
.+++...+.. ..|... ...... . ... ...+ ..+..+..++...+.+.+ ++|+++++|++++.++
T Consensus 61 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~i~~~~ 139 (502)
T PRK06184 61 LDRVVAAGGLYPPMRIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELG-HRVEFGCELVGFEQDA 139 (502)
T ss_pred HHHHHhcCccccceeEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCC-CEEEeCcEEEEEEEcC
Confidence 1222221110 011100 000000 0 000 0011 112223333333333447 9999999999999887
Q ss_pred CCCcEEEEe---cCCCeeecCEEEEcCChh
Q psy12489 143 STNQIEVTS---KEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 143 ~~~~~~v~~---~~g~~~~~d~vV~a~p~~ 169 (365)
+++.+++ .++++++||.||.|.+..
T Consensus 140 --~~v~v~~~~~~~~~~i~a~~vVgADG~~ 167 (502)
T PRK06184 140 --DGVTARVAGPAGEETVRARYLVGADGGR 167 (502)
T ss_pred --CcEEEEEEeCCCeEEEEeCEEEECCCCc
Confidence 7777766 455679999999998754
No 58
>KOG4254|consensus
Probab=99.48 E-value=6.3e-12 Score=114.03 Aligned_cols=236 Identities=9% Similarity=0.096 Sum_probs=131.5
Q ss_pred cceEEcCCChHHHHHHHHh---hCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhhHH-Hhhcccc
Q psy12489 104 VTHYVTPQGSSSIVKYFLN---KSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVT-DLFNRSE 179 (365)
Q Consensus 104 ~~~~~~~~g~~~l~~~l~~---~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~-~ll~~~~ 179 (365)
..+..+.+||..+..++++ +.| .+|.++..|.+|-.++ +..+.|...||+.+.+..||..+.+..+. +|+++..
T Consensus 254 g~~~Yp~GG~Gavs~aia~~~~~~G-aeI~tka~Vq~Illd~-gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~ 331 (561)
T KOG4254|consen 254 GGWGYPRGGMGAVSFAIAEGAKRAG-AEIFTKATVQSILLDS-GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA 331 (561)
T ss_pred CcccCCCCChhHHHHHHHHHHHhcc-ceeeehhhhhheeccC-CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence 3455678999999888875 447 8999999999998776 24467999999999998888877655555 7777643
Q ss_pred ccccchHHHHHHhhcCCcc-ceeE----EEEeccCC--CCCCcce---EEe-----------c-------CCCcEEEeee
Q psy12489 180 MMHIALTGAAQVLLDVEYS-SRYA----FGMFFDKQ--FERPFDI---KYF-----------D-------DNEIIRYISF 231 (365)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~-~~~~----v~l~~~~~--~~~~~~~---~~~-----------~-------~~~~~~~~~~ 231 (365)
||.+. .++.+.+. ++.+ .++..... ...|..+ -+. . +..++-+++.
T Consensus 332 ----LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~si 405 (561)
T KOG4254|consen 332 ----LPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSI 405 (561)
T ss_pred ----CCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEec
Confidence 55443 22333322 2221 12221111 1111111 010 0 1125556666
Q ss_pred cCCCC-CC-CCCCceEEEEeCh---hhhhhhcCCCCchh-hHHHHHHHHHHhHCCCCCC-CceEee------ecCCCCCC
Q psy12489 232 DNVKR-NR-PDEPISVCVHTTT---QYYNSFLDSETPRN-VIERELLDLIRKMFPSWPL-PAETKL------QTWKYSQV 298 (365)
Q Consensus 232 ~~~~~-~~-~~~~~~~~~~~~~---~~~~~~~~~~~e~~-~~~~~~~~~l~~~~~~~~~-~~~~~~------~rw~~a~~ 298 (365)
+++.+ .- +++...+.+++.. .|......+.++.| +..+++++.+.+++|.+.. ++...+ .|. .+.+
T Consensus 406 PS~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~-l~~~ 484 (561)
T KOG4254|consen 406 PSSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRF-LGRP 484 (561)
T ss_pred ccccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHH-hcCC
Confidence 66653 32 3322333344332 34322211111111 3788999999999987542 222111 111 1111
Q ss_pred cC-------CC----CCccccee---ecCCCeEEEecccccCCCchhHHHHHHHHHHhhhhccchh
Q psy12489 299 VD-------PH----RDKLGFMQ---FSAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMVGKHW 350 (365)
Q Consensus 299 ~~-------~~----~~~~~~~~---~~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~~~~~ 350 (365)
.- .. ..+|...+ .++.++||+|||.++|++++-+|- |+.+|...+.....
T Consensus 485 ~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgGV~a~a--G~~~A~~a~~~~~~ 548 (561)
T KOG4254|consen 485 GGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGGGVMAAA--GRLAAHSAILDRKL 548 (561)
T ss_pred CCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCCCccccc--hhHHHHHHhhhhhh
Confidence 10 00 01111111 356789999999999888888877 99999888765444
No 59
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.48 E-value=1.1e-11 Score=116.99 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=36.9
Q ss_pred CCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChh
Q psy12489 125 NIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 125 g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
+ ++++++++|++++.++ +++.|++.+|+++++|.||.|.+..
T Consensus 127 g-v~i~~~~~v~~i~~~~--~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (391)
T PRK08020 127 N-VTLRCPASLQALQRDD--DGWELTLADGEEIQAKLVIGADGAN 168 (391)
T ss_pred C-cEEEcCCeeEEEEEcC--CeEEEEECCCCEEEeCEEEEeCCCC
Confidence 5 8999999999998877 7788888888889999999998753
No 60
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.48 E-value=1.5e-11 Score=116.09 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=77.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHH--hhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTD--IYQ 79 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~--~~~ 79 (365)
.||+|||||++||++|+.|++.| ++|+|+|+.+.+..... + .+... +...+...+.++. +.+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G----~~v~v~E~~~~~~~~~~--------~--~~~r~--~~l~~~~~~~l~~~g~~~ 69 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSG----LRVALLAPRAPPRPADD--------A--WDSRV--YAISPSSQAFLERLGVWQ 69 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCC----CeEEEEecCCCccccCC--------C--CCCce--EeecHHHHHHHHHcCchh
Confidence 49999999999999999999998 99999999876532100 0 00000 1111111111110 111
Q ss_pred hhhhcCc-----cccccccccccccc----CCCcceEEc-CCCh-HHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEE
Q psy12489 80 PLLDEKL-----LEPFTANIIGYKSR----KKNVTHYVT-PQGS-SSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIE 148 (365)
Q Consensus 80 ~l~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~-~~g~-~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~ 148 (365)
.+...+. +..+......+... ..+...+.. ..-+ ..|.+.+.+ .+.++++ +++|++++..+ +.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~-~~~v~~~-~~~v~~i~~~~--~~~~ 145 (388)
T PRK07608 70 ALDAARLAPVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRF-QPNLTWF-PARAQGLEVDP--DAAT 145 (388)
T ss_pred hhhhhcCCcceEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHh-CCCcEEE-cceeEEEEecC--CeEE
Confidence 1110000 00000000000000 001111111 1112 223343333 2326677 99999998877 7888
Q ss_pred EEecCCCeeecCEEEEcCCh
Q psy12489 149 VTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 149 v~~~~g~~~~~d~vV~a~p~ 168 (365)
|++.+|.++.||.||.|.+.
T Consensus 146 v~~~~g~~~~a~~vI~adG~ 165 (388)
T PRK07608 146 LTLADGQVLRADLVVGADGA 165 (388)
T ss_pred EEECCCCEEEeeEEEEeCCC
Confidence 98888888999999999875
No 61
>PRK08244 hypothetical protein; Provisional
Probab=99.48 E-value=1.3e-11 Score=120.09 Aligned_cols=141 Identities=14% Similarity=0.163 Sum_probs=80.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCC--ccceeecCCCCCCeeeecccceeecChhcchhHH--Hh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPG--GRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHT--DI 77 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~g--gr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~--~~ 77 (365)
.||+|||||++||++|..|+++| ++|+|+|+.+.+. ++... + .+...+.++ .+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G----~~v~viEr~~~~~~~~ra~~-----------------l--~~~~~e~l~~lGl 59 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAG----VKTCVIERLKETVPYSKALT-----------------L--HPRTLEILDMRGL 59 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CcEEEEecCCCCCCCcceeE-----------------e--cHHHHHHHHhcCc
Confidence 59999999999999999999998 9999999986431 11110 1 111111000 01
Q ss_pred hhhhhhcCccc-c--cccccccccc--cC--CCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEE
Q psy12489 78 YQPLLDEKLLE-P--FTANIIGYKS--RK--KNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVT 150 (365)
Q Consensus 78 ~~~l~~~~~~~-~--~~~~~~~~~~--~~--~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~ 150 (365)
.+.+...+... . +......+.. .. ........+..+..++...+++.+ ++++++++|++++.++ +++.++
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~g-v~v~~~~~v~~i~~~~--~~v~v~ 136 (493)
T PRK08244 60 LERFLEKGRKLPSGHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLG-VEIFRGAEVLAVRQDG--DGVEVV 136 (493)
T ss_pred HHHHHhhcccccceEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcC-CeEEeCCEEEEEEEcC--CeEEEE
Confidence 11221111100 0 0000000000 00 011112223345555555555567 9999999999998877 777665
Q ss_pred ec--CC-CeeecCEEEEcCCh
Q psy12489 151 SK--EG-KKGIFDIVVLSMPA 168 (365)
Q Consensus 151 ~~--~g-~~~~~d~vV~a~p~ 168 (365)
.. +| +++++|.||.|.+.
T Consensus 137 ~~~~~g~~~i~a~~vVgADG~ 157 (493)
T PRK08244 137 VRGPDGLRTLTSSYVVGADGA 157 (493)
T ss_pred EEeCCccEEEEeCEEEECCCC
Confidence 43 45 46899999999875
No 62
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.48 E-value=1.6e-11 Score=116.12 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=39.8
Q ss_pred HHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChh
Q psy12489 117 VKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 117 ~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
.+.+.+..+ ++++++++|+++..++ ++|.+++.+|.++.+|.||.|.+..
T Consensus 119 ~~~~~~~~g-~~~~~~~~v~~i~~~~--~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 119 FALLDKAPG-VTLHCPARVANVERTQ--GSVRVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred HHHHhcCCC-cEEEcCCEEEEEEEcC--CeEEEEECCCCEEEeCEEEEecCCC
Confidence 333333335 8999999999998877 7888988888889999999998753
No 63
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.48 E-value=1.6e-13 Score=94.91 Aligned_cols=54 Identities=30% Similarity=0.563 Sum_probs=48.6
Q ss_pred EEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeec
Q psy12489 6 IVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITT 66 (365)
Q Consensus 6 IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~ 66 (365)
|||||++||++|+.|+++| ++|+|||+++++||++.+...+ ++.+|.|++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g----~~v~v~E~~~~~GG~~~~~~~~---g~~~d~g~~~~~~ 54 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG----YRVTVFEKNDRLGGRARSFRIP---GYRFDLGAHYFFP 54 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT----SEEEEEESSSSSSGGGCEEEET---TEEEETSS-SEEE
T ss_pred CEeeCHHHHHHHHHHHHCC----CcEEEEecCcccCcceeEEEEC---CEEEeeccEEEeC
Confidence 8999999999999999997 9999999999999999998873 5899999999876
No 64
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.47 E-value=4e-12 Score=121.13 Aligned_cols=149 Identities=13% Similarity=0.204 Sum_probs=80.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.||+|||||+||++||+.|+++| ++|+|+|+.+.+|....+. +...-.....+ .+++... ..++..
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G----~~V~llEr~~~~g~k~~~g------g~l~~~~~e~l--~~~~~~~--~~~~~~ 71 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREG----AQVLVIERGNSAGAKNVTG------GRLYAHSLEHI--IPGFADS--APVERL 71 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCC----CeEEEEEcCCCCCCccccc------ceechhhHHHH--hhhhhhc--Ccccce
Confidence 59999999999999999999998 9999999988776431100 00000000000 0000000 000000
Q ss_pred hhcCcccccccccccc----cc---cCCCcceE-EcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecC
Q psy12489 82 LDEKLLEPFTANIIGY----KS---RKKNVTHY-VTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKE 153 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~-~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~ 153 (365)
..... ..|....... .. .......| ..+..+++++...+++.| ++++.+++|+++..++ +.+.....+
T Consensus 72 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~G-v~i~~~~~V~~i~~~~--g~v~~v~~~ 147 (428)
T PRK10157 72 ITHEK-LAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAG-AQLITGIRVDNLVQRD--GKVVGVEAD 147 (428)
T ss_pred eeeee-EEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCC-CEEECCCEEEEEEEeC--CEEEEEEcC
Confidence 00000 0010000000 00 00011112 223344555554555568 9999999999998766 666444456
Q ss_pred CCeeecCEEEEcCCh
Q psy12489 154 GKKGIFDIVVLSMPA 168 (365)
Q Consensus 154 g~~~~~d~vV~a~p~ 168 (365)
|.++.||.||.|.+.
T Consensus 148 g~~i~A~~VI~A~G~ 162 (428)
T PRK10157 148 GDVIEAKTVILADGV 162 (428)
T ss_pred CcEEECCEEEEEeCC
Confidence 678999999999875
No 65
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.46 E-value=6.4e-13 Score=124.44 Aligned_cols=152 Identities=19% Similarity=0.354 Sum_probs=77.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeec---ccceeec----ChhcchhH
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDL---GLQYITT----TPDFLSNH 74 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~---g~~~~~~----~~~~~~~~ 74 (365)
.||+|||||+|||+||+.|++.| .+|+|||+++.+|-++.-... ..+++.. ....|.. .+.+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g----~~V~vlE~~~~~gkKil~tG~---GrCN~tn~~~~~~~~~~~~~~~~~f~--- 70 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKG----ARVLVLERNKRVGKKILITGN---GRCNLTNLNIDPSEFLSGYGRNPKFL--- 70 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT------EEEE-SSSSS-HHHHHCGG---GT-EEEETTSSGGGEECS-TBTTTCT---
T ss_pred CcEEEECCCHHHHHHHHHHHhCC----CCEEEEeCCcccccceeecCC---CCccccccccchhhHhhhcccchHHH---
Confidence 48999999999999999999998 999999999999854322111 1232222 1111111 12222
Q ss_pred HHhhhhhhhcCccccccccccccccc-CCCcceEEcCCChHHHHHHHHh---hCCCceEEEeeeeEEeeecCCCCc-EEE
Q psy12489 75 TDIYQPLLDEKLLEPFTANIIGYKSR-KKNVTHYVTPQGSSSIVKYFLN---KSNIDEICYNTFLETMAKTDSTNQ-IEV 149 (365)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~l~~~l~~---~~g~~~i~~~~~V~~i~~~~~~~~-~~v 149 (365)
+..++.+...++ ..|... .|+... +.....|.....-.++++.|.+ +.+ ++|+++++|.+|+..+ ++ +.|
T Consensus 71 ~~~l~~f~~~d~-~~ff~~-~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~g-v~i~~~~~V~~i~~~~--~~~f~v 145 (409)
T PF03486_consen 71 KSALKRFSPEDL-IAFFEE-LGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLG-VEIHFNTRVKSIEKKE--DGVFGV 145 (409)
T ss_dssp HHHHHHS-HHHH-HHHHHH-TT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT--EEE-S--EEEEEEET--TEEEEE
T ss_pred HHHHhcCCHHHH-HHHHHh-cCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcC-CEEEeCCEeeeeeecC--CceeEe
Confidence 122222211111 111110 111111 1223344433345566666543 447 9999999999999877 66 888
Q ss_pred EecCCCeeecCEEEEcCCh
Q psy12489 150 TSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 150 ~~~~g~~~~~d~vV~a~p~ 168 (365)
.+.++.++.||.||+|++.
T Consensus 146 ~~~~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 146 KTKNGGEYEADAVILATGG 164 (409)
T ss_dssp EETTTEEEEESEEEE----
T ss_pred eccCcccccCCEEEEecCC
Confidence 8877778999999999864
No 66
>PRK07588 hypothetical protein; Provisional
Probab=99.46 E-value=3e-12 Score=120.90 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=36.5
Q ss_pred ceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCCh
Q psy12489 127 DEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 127 ~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~ 168 (365)
++|+++++|++++..+ +++.+++.+|+++.+|.||.|.+.
T Consensus 117 v~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~~d~vIgADG~ 156 (391)
T PRK07588 117 VETIFDDSIATIDEHR--DGVRVTFERGTPRDFDLVIGADGL 156 (391)
T ss_pred eEEEeCCEEeEEEECC--CeEEEEECCCCEEEeCEEEECCCC
Confidence 7999999999999887 889999999988999999999874
No 67
>PRK06996 hypothetical protein; Provisional
Probab=99.46 E-value=2.5e-11 Score=114.81 Aligned_cols=42 Identities=10% Similarity=-0.057 Sum_probs=35.6
Q ss_pred hCCCceEEEeeeeEEeeecCCCCcEEEEecCC---CeeecCEEEEcCC
Q psy12489 123 KSNIDEICYNTFLETMAKTDSTNQIEVTSKEG---KKGIFDIVVLSMP 167 (365)
Q Consensus 123 ~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g---~~~~~d~vV~a~p 167 (365)
..+ ++++++++|++++.++ ++|++++.++ ++++||.||.|-+
T Consensus 127 ~~g-~~~~~~~~v~~~~~~~--~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 127 GTP-VRWLTSTTAHAPAQDA--DGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred hCC-CEEEcCCeeeeeeecC--CeEEEEECCCCcceEEeeeEEEECCC
Confidence 347 8999999999998887 8898887754 5799999999976
No 68
>PRK07190 hypothetical protein; Provisional
Probab=99.45 E-value=4.2e-11 Score=115.63 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=80.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCC--ccceeecCCCCCCeeeecccceeecChhcchhHH--Hh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPG--GRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHT--DI 77 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~g--gr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~--~~ 77 (365)
.||+|||||++||++|+.|+++| ++|+|+|+.+.+. ||.... . +...+.++ .+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~G----i~V~llEr~~~~~~~gra~~l-----------------~--~~tle~L~~lGl 62 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCG----LNTVIVDKSDGPLEVGRADAL-----------------N--ARTLQLLELVDL 62 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcC----CCEEEEeCCCcccccccceEe-----------------C--HHHHHHHHhcCh
Confidence 59999999999999999999998 9999999987552 221110 0 00000000 11
Q ss_pred hhhhhhcCcc----cccccc-ccc-cccc----C-CCcceE--EcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCC
Q psy12489 78 YQPLLDEKLL----EPFTAN-IIG-YKSR----K-KNVTHY--VTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDST 144 (365)
Q Consensus 78 ~~~l~~~~~~----~~~~~~-~~~-~~~~----~-~~~~~~--~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~ 144 (365)
++.+...+.. ..|... +.. .... . .....+ ....-+..++...+++.| ++++++++|++++.++
T Consensus 63 ~~~l~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~G-v~v~~~~~v~~l~~~~-- 139 (487)
T PRK07190 63 FDELYPLGKPCNTSSVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAG-AAVKRNTSVVNIELNQ-- 139 (487)
T ss_pred HHHHHhhCccceeEEEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEEcC--
Confidence 1111111110 111100 000 0000 0 001111 111123333333334568 9999999999999888
Q ss_pred CcEEEEecCCCeeecCEEEEcCChh
Q psy12489 145 NQIEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 145 ~~~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
+++.+.+.+|++++|++||.|.+..
T Consensus 140 ~~v~v~~~~g~~v~a~~vVgADG~~ 164 (487)
T PRK07190 140 AGCLTTLSNGERIQSRYVIGADGSR 164 (487)
T ss_pred CeeEEEECCCcEEEeCEEEECCCCC
Confidence 7788777778889999999998854
No 69
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.45 E-value=8.1e-13 Score=126.25 Aligned_cols=149 Identities=15% Similarity=0.237 Sum_probs=88.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||+|||+||+.|++.| ++|+|||+++.+||.+............++.+....+. ..++.|
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~G----~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s---------~~Y~~L 77 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRREG----HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHS---------SVYESL 77 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhcC----CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccch---------hhhhhh
Confidence 58999999999999999999998 99999999999999865432211001111111000000 011111
Q ss_pred hhcCccccccccccccccc------CCCcceEEcCCChHHHHHHHHhhCCCce--EEEeeeeEEeeecCCCCcEEEEecC
Q psy12489 82 LDEKLLEPFTANIIGYKSR------KKNVTHYVTPQGSSSIVKYFLNKSNIDE--ICYNTFLETMAKTDSTNQIEVTSKE 153 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~l~~~l~~~~g~~~--i~~~~~V~~i~~~~~~~~~~v~~~~ 153 (365)
..+- . .+...|.+++.. ......|.....+..+++..++..+ +. |+++++|++|+..+ +.|.|++.+
T Consensus 78 ~tn~-p-~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fg-l~~~I~~~t~V~~V~~~~--~~w~V~~~~ 152 (461)
T PLN02172 78 RTNL-P-RECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFK-IEEMVRFETEVVRVEPVD--GKWRVQSKN 152 (461)
T ss_pred hccC-C-HhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcC-CcceEEecCEEEEEeecC--CeEEEEEEc
Confidence 1110 0 000001111100 0112334433345566666677767 65 99999999999887 889998764
Q ss_pred C--C--eeecCEEEEcCCh
Q psy12489 154 G--K--KGIFDIVVLSMPA 168 (365)
Q Consensus 154 g--~--~~~~d~vV~a~p~ 168 (365)
+ . +..+|+||+|++.
T Consensus 153 ~~~~~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 153 SGGFSKDEIFDAVVVCNGH 171 (461)
T ss_pred CCCceEEEEcCEEEEeccC
Confidence 3 2 3579999999984
No 70
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.45 E-value=4.9e-11 Score=110.43 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=48.9
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeec
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITT 66 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~ 66 (365)
|.||+|||||++|+++|+.|++.| .+|+|+|+++.+||...+.... .....+.|++++..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G----~~V~viEk~~~iGG~~~~~~~~--g~~~~~~G~h~f~t 60 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLN----KRVLVVEKRNHIGGNCYDEVDE--TILFHQYGPHIFHT 60 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC----CeEEEEecCCCCCCceeeecCC--CceEEeecceeEec
Confidence 789999999999999999999987 9999999999999987775442 12334777776654
No 71
>PRK06834 hypothetical protein; Provisional
Probab=99.45 E-value=3.1e-11 Score=116.65 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=80.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCC---ccceeecCCCCCCeeeecccceeecChhcchhHH--H
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPG---GRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHT--D 76 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~g---gr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~--~ 76 (365)
.||+|||||++|+++|+.|+++| ++|+|+|+.+.+. .|... ++ +...+.++ .
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G----~~v~vlEr~~~~~~~~~Ra~~-----------------l~--~~s~~~L~~lG 60 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAG----VDVAIVERRPNQELVGSRAGG-----------------LH--ARTLEVLDQRG 60 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCC----CcEEEEecCCCCCCCCcceee-----------------EC--HHHHHHHHHcC
Confidence 49999999999999999999998 9999999986431 11100 11 11110000 1
Q ss_pred hhhhhhhcCccccccccccccccc--C-C---CcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEE
Q psy12489 77 IYQPLLDEKLLEPFTANIIGYKSR--K-K---NVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVT 150 (365)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~--~-~---~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~ 150 (365)
+.+.+...+...... .+...... . . ..........+..++...+++.+ ++++++++|++++.++ +++.++
T Consensus 61 l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~v~~~~--~~v~v~ 136 (488)
T PRK06834 61 IADRFLAQGQVAQVT-GFAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELG-VPIYRGREVTGFAQDD--TGVDVE 136 (488)
T ss_pred cHHHHHhcCCccccc-eeeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEEcC--CeEEEE
Confidence 122222211110000 00000000 0 0 00111111223333333344457 9999999999999888 888888
Q ss_pred ecCCCeeecCEEEEcCCh
Q psy12489 151 SKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 151 ~~~g~~~~~d~vV~a~p~ 168 (365)
+.+|+++++|.||.|.+.
T Consensus 137 ~~~g~~i~a~~vVgADG~ 154 (488)
T PRK06834 137 LSDGRTLRAQYLVGCDGG 154 (488)
T ss_pred ECCCCEEEeCEEEEecCC
Confidence 888888999999999875
No 72
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.44 E-value=2.2e-12 Score=119.88 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=30.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
.||+|||||++||++|..|+++| ++|+|||+...+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G----~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG----IDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT----CEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcc----cccccchhcccc
Confidence 58999999999999999999998 999999997655
No 73
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.44 E-value=5.7e-11 Score=113.17 Aligned_cols=41 Identities=24% Similarity=0.487 Sum_probs=35.0
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceee
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTS 47 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~ 47 (365)
||+|||||++||++|++|+++| .+|+|+|+...++..++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g----~~V~vle~~~~~~~~aS~~ 42 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAG----HEVTVIDRQPGPALETSFA 42 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCC----CEEEEEeCCCchhhhheec
Confidence 8999999999999999999998 9999999986565444433
No 74
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.43 E-value=6.8e-13 Score=113.52 Aligned_cols=134 Identities=16% Similarity=0.254 Sum_probs=78.3
Q ss_pred EEEccCHHHHHHHHHHHHhcCCCcee-EEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHh-hhhhh
Q psy12489 5 LIVGSGITSALTSYLLRQKLLTDLIH-ITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDI-YQPLL 82 (365)
Q Consensus 5 ~IIGaG~aGl~~A~~L~~~g~~~~~~-v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~-~~~l~ 82 (365)
+|||||++||++|+.|.++| .+ ++|||+++.+||.+...... ..+ ... ..+.....+. .+..+ ....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g----~~~v~v~e~~~~~Gg~w~~~~~~--~~~-~~~--~~~~~~~~~~-~~~~~~~~~~- 69 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG----IDPVVVLERNDRPGGVWRRYYSY--TRL-HSP--SFFSSDFGLP-DFESFSFDDS- 69 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-------EEEEESSSSSTTHHHCH-TT--TT--BSS--SCCTGGSS---CCCHSCHHHH-
T ss_pred CEECcCHHHHHHHHHHHhCC----CCcEEEEeCCCCCCCeeEEeCCC--Ccc-ccC--ccccccccCC-cccccccccC-
Confidence 79999999999999999998 88 99999999999987643211 000 000 0000000000 00000 0000
Q ss_pred hcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEE
Q psy12489 83 DEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIV 162 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~v 162 (365)
..|.. ...+.....+..+++.++++++ .+++++++|+++++.+ ++|.|++.+++++.||+|
T Consensus 70 -----~~~~~-----------~~~~~~~~~v~~yl~~~~~~~~-l~i~~~~~V~~v~~~~--~~w~v~~~~~~~~~a~~V 130 (203)
T PF13738_consen 70 -----PEWRW-----------PHDFPSGEEVLDYLQEYAERFG-LEIRFNTRVESVRRDG--DGWTVTTRDGRTIRADRV 130 (203)
T ss_dssp -----HHHHH-----------SBSSEBHHHHHHHHHHHHHHTT-GGEETS--EEEEEEET--TTEEEEETTS-EEEEEEE
T ss_pred -----CCCCC-----------CcccCCHHHHHHHHHHHHhhcC-cccccCCEEEEEEEec--cEEEEEEEecceeeeeeE
Confidence 00100 0112223345677788888888 8999999999999998 889999999988999999
Q ss_pred EEcCCh
Q psy12489 163 VLSMPA 168 (365)
Q Consensus 163 V~a~p~ 168 (365)
|+|++.
T Consensus 131 VlAtG~ 136 (203)
T PF13738_consen 131 VLATGH 136 (203)
T ss_dssp EE---S
T ss_pred EEeeec
Confidence 999984
No 75
>PRK10015 oxidoreductase; Provisional
Probab=99.43 E-value=2e-11 Score=116.21 Aligned_cols=148 Identities=11% Similarity=0.159 Sum_probs=77.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcch--hHHHhh-
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLS--NHTDIY- 78 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~--~~~~~~- 78 (365)
.||+|||||+||++||+.|+++| ++|+|+|+...+|-...+ + ..+... ....+. +.+.. .+++..
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G----~~VlliEr~~~~g~k~~~----g-g~i~~~-~~~~l~--~~~~~~~~i~~~~~ 73 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAG----LDVLVIERGDSAGCKNMT----G-GRLYAH-TLEAII--PGFAASAPVERKVT 73 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCC----CeEEEEecCCCCCccccc----C-ceeecc-cHHHHc--ccccccCCcccccc
Confidence 49999999999999999999998 999999998766532100 0 000000 000000 00000 000000
Q ss_pred ----hhhhhcC-cccccccccccccccCCCcceEE-cCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEec
Q psy12489 79 ----QPLLDEK-LLEPFTANIIGYKSRKKNVTHYV-TPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSK 152 (365)
Q Consensus 79 ----~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~ 152 (365)
..+...+ ....|.....+ ......|. .+.-+...+...+++.| ++++.+++|+.+..++ +++.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~R~~fd~~L~~~a~~~G-v~i~~~~~V~~i~~~~--~~v~~v~~ 146 (429)
T PRK10015 74 REKISFLTEESAVTLDFHREQPD----VPQHASYTVLRNRLDPWLMEQAEQAG-AQFIPGVRVDALVREG--NKVTGVQA 146 (429)
T ss_pred ceeEEEEeCCCceEeecccCCCC----CCCcCceEeehhHHHHHHHHHHHHcC-CEEECCcEEEEEEEeC--CEEEEEEe
Confidence 0000000 00001000000 00111222 23345554444455568 9999999999998766 66653333
Q ss_pred CCCeeecCEEEEcCCh
Q psy12489 153 EGKKGIFDIVVLSMPA 168 (365)
Q Consensus 153 ~g~~~~~d~vV~a~p~ 168 (365)
++.++.||.||.|.+.
T Consensus 147 ~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 147 GDDILEANVVILADGV 162 (429)
T ss_pred CCeEEECCEEEEccCc
Confidence 4457899999999875
No 76
>PRK06126 hypothetical protein; Provisional
Probab=99.43 E-value=8.6e-11 Score=115.74 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=31.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
.||+|||||++||++|+.|+++| ++|+|||+...
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G----~~v~viEr~~~ 41 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRG----VDSILVERKDG 41 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CcEEEEeCCCC
Confidence 48999999999999999999998 99999998753
No 77
>PRK07538 hypothetical protein; Provisional
Probab=99.43 E-value=3.1e-11 Score=114.76 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=38.1
Q ss_pred CCeEEEeccccc---C--CCchhHHHHHHHHHHhhhhccchhhhhhhhhccCCC
Q psy12489 314 KPLVICIGDSYV---P--QSNFDGCIHSAKQTTGASMVGKHWMLGLLRYWENPT 362 (365)
Q Consensus 314 ~~~l~~aGd~~~---~--~~~~~gA~~SG~~aA~~l~~~~~~~~~~~~~~~~~~ 362 (365)
.+++.++||+.| | +.++..|+++|...|+.|... .+.-.+|..|++.+
T Consensus 296 ~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~-~~~~~aL~~Ye~~R 348 (413)
T PRK07538 296 RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH-GDPEAALAAYEAER 348 (413)
T ss_pred CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHh
Confidence 368999999988 3 359999999999999999753 34566888888654
No 78
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.42 E-value=4.8e-10 Score=106.49 Aligned_cols=193 Identities=14% Similarity=0.134 Sum_probs=93.3
Q ss_pred hCCCceEEEeeeeEEeeecCCCCc-EEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCcccee
Q psy12489 123 KSNIDEICYNTFLETMAKTDSTNQ-IEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRY 201 (365)
Q Consensus 123 ~~g~~~i~~~~~V~~i~~~~~~~~-~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~ 201 (365)
+.| +++..+++|++++..++ +. +.|.+.+| ++.+++||+|+.... ..+..... + .++..+..
T Consensus 195 ~~G-v~~~~~~~V~~i~~~~~-~~~~~v~t~~g-~i~a~~vVvaagg~~-~~l~~~~g----~---------~~~~~~~~ 257 (407)
T TIGR01373 195 RRG-VDIIQNCEVTGFIRRDG-GRVIGVETTRG-FIGAKKVGVAVAGHS-SVVAAMAG----F---------RLPIESHP 257 (407)
T ss_pred HCC-CEEEeCCEEEEEEEcCC-CcEEEEEeCCc-eEECCEEEECCChhh-HHHHHHcC----C---------CCCcCccc
Confidence 447 99999999999976431 44 45777777 689999999987532 12211111 0 11111111
Q ss_pred EEEEeccCCCCCCcceEEecCCCcEEEeeecCCCCCCCCCCceEEEEeChhhhhhhcCCCCchhhHHHHHHHHHHhHCCC
Q psy12489 202 AFGMFFDKQFERPFDIKYFDDNEIIRYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPS 281 (365)
Q Consensus 202 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~ 281 (365)
.-.+..+ +........++..+..+ ++. + .. ++ .+.+.....-....-...+.+ ..+.+++.+.+++|.
T Consensus 258 ~~~~~~~-~~~~~~~~~~~~~~~~~-y~~-----p-~~-~g-~~~ig~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~P~ 325 (407)
T TIGR01373 258 LQALVSE-PLKPIIDTVVMSNAVHF-YVS-----Q-SD-KG-ELVIGGGIDGYNSYAQRGNLP--TLEHVLAAILEMFPI 325 (407)
T ss_pred ceEEEec-CCCCCcCCeEEeCCCce-EEE-----E-cC-Cc-eEEEecCCCCCCccCcCCCHH--HHHHHHHHHHHhCCC
Confidence 1112222 21111111222111111 111 1 01 12 233332211000011112333 678888999999986
Q ss_pred CCCCceEeeecCCCCCCcCCCCCcccceeecCCCeEEEecccccCCCchhHHHHHHHHHHhhhhccchh
Q psy12489 282 WPLPAETKLQTWKYSQVVDPHRDKLGFMQFSAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMVGKHW 350 (365)
Q Consensus 282 ~~~~~~~~~~rw~~a~~~~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~~~~~ 350 (365)
+.... ..+.|....+..+- ....+-..+.+++|++.- .. +.++-.|...|+.+|+.|..+...
T Consensus 326 l~~~~--~~~~w~G~~~~t~D--~~PiIg~~~~~gl~~a~G-~~-g~G~~~ap~~G~~la~li~~~~~~ 388 (407)
T TIGR01373 326 LSRVR--MLRSWGGIVDVTPD--GSPIIGKTPLPNLYLNCG-WG-TGGFKATPASGTVFAHTLARGEPH 388 (407)
T ss_pred cCCCC--eEEEeccccccCCC--CCceeCCCCCCCeEEEec-cC-CcchhhchHHHHHHHHHHhCCCCC
Confidence 54332 24567544443221 111221122356776642 33 467888888899999998866543
No 79
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.41 E-value=1.1e-11 Score=117.41 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=36.3
Q ss_pred ceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChh
Q psy12489 127 DEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 127 ~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
++++++++|++++.++ +++.+++.+|+++.+|.||.|.+..
T Consensus 125 v~~~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 125 VEFRTSTHVVGIEQDG--DGVTVFDQQGNRWTGDALIGCDGVK 165 (396)
T ss_pred cEEEeCCEEEEEecCC--CceEEEEcCCCEEecCEEEECCCcC
Confidence 7899999999998877 7788888888889999999998753
No 80
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.41 E-value=5.7e-12 Score=119.91 Aligned_cols=54 Identities=7% Similarity=0.119 Sum_probs=45.2
Q ss_pred HHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChh
Q psy12489 114 SSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 114 ~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
..|.+.|.+.++...++++++|++|+.++ ++|.+++.+|.++.+|.||.|.+..
T Consensus 105 ~~l~~~L~~~~~~~~v~~~~~v~~i~~~~--~~~~v~~~~g~~~~ad~vVgADG~~ 158 (414)
T TIGR03219 105 ADFLDALLKHLPEGIASFGKRATQIEEQA--EEVQVLFTDGTEYRCDLLIGADGIK 158 (414)
T ss_pred HHHHHHHHHhCCCceEEcCCEEEEEEecC--CcEEEEEcCCCEEEeeEEEECCCcc
Confidence 45777787766436789999999999887 8899999999899999999998754
No 81
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.39 E-value=6.8e-11 Score=116.17 Aligned_cols=143 Identities=14% Similarity=0.117 Sum_probs=77.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHH--hhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTD--IYQ 79 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~--~~~ 79 (365)
.||+|||||++||++|..|+++| ++|+|||+...+...... +.+ .++..+.++. +.+
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G----~~v~v~Er~~~~~~~~ra--------~~l---------~~~~~~~L~~lGl~~ 69 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYG----VRVLVLERWPTLYDLPRA--------VGI---------DDEALRVLQAIGLAD 69 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CcEEEEecCCCCCCCCce--------eee---------CHHHHHHHHHcCChh
Confidence 59999999999999999999998 999999998755321000 001 1111110000 111
Q ss_pred hhhhcCcc---ccccccccc-----ccccCCCcceE-----EcCCChHHHHHHHHhhC-CCceEEEeeeeEEeeecCCCC
Q psy12489 80 PLLDEKLL---EPFTANIIG-----YKSRKKNVTHY-----VTPQGSSSIVKYFLNKS-NIDEICYNTFLETMAKTDSTN 145 (365)
Q Consensus 80 ~l~~~~~~---~~~~~~~~~-----~~~~~~~~~~~-----~~~~g~~~l~~~l~~~~-g~~~i~~~~~V~~i~~~~~~~ 145 (365)
.+...+.. ..|... .+ +.........| ..+.-+..++...+.+. + ++|+++++|++++.++ +
T Consensus 70 ~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~g-v~v~~g~~v~~i~~~~--~ 145 (538)
T PRK06183 70 EVLPHTTPNHGMRFLDA-KGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPH-VRVRFGHEVTALTQDD--D 145 (538)
T ss_pred HHHhhcccCCceEEEcC-CCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCC-cEEEcCCEEEEEEEcC--C
Confidence 11111110 001000 00 00000000001 11122223332222333 5 8999999999999888 7
Q ss_pred cEEEEec--CC--CeeecCEEEEcCChh
Q psy12489 146 QIEVTSK--EG--KKGIFDIVVLSMPAP 169 (365)
Q Consensus 146 ~~~v~~~--~g--~~~~~d~vV~a~p~~ 169 (365)
++++++. +| .++++|.||.|.+..
T Consensus 146 ~v~v~~~~~~G~~~~i~ad~vVgADG~~ 173 (538)
T PRK06183 146 GVTVTLTDADGQRETVRARYVVGCDGAN 173 (538)
T ss_pred eEEEEEEcCCCCEEEEEEEEEEecCCCc
Confidence 8877765 56 368999999998753
No 82
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.39 E-value=2e-10 Score=108.49 Aligned_cols=42 Identities=29% Similarity=0.484 Sum_probs=36.5
Q ss_pred CCcEEEEccCHHHHHHHHHHHHh--cCCCceeEEEEecCCCCCcccee
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQK--LLTDLIHITIWDKARGPGGRMTT 46 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~--g~~~~~~v~v~E~~~~~ggr~~t 46 (365)
|.||+|||||++|+++|++|+++ | .+|+|||+...+|+..+.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g----~~V~llE~~~~~~~~aS~ 45 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPG----ARIAVLEKESGPARHQTG 45 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCC----CeEEEEeCCCcccccccc
Confidence 46999999999999999999999 7 999999998777655443
No 83
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.38 E-value=2.2e-10 Score=112.88 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=32.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
.||+|||||++||++|+.|+++| ++|+|+|+...+
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G----~~v~viE~~~~~ 58 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQG----VPVVLLDDDDTL 58 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC----CcEEEEeCCCCC
Confidence 48999999999999999999998 999999998754
No 84
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.38 E-value=3.4e-11 Score=111.93 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=91.6
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecC-------------
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTT------------- 67 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~------------- 67 (365)
|.||+|||||+.|+++|++|++.++. ++|+|+||.+.+|.-.+.+..+ .=|.+.++++.
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~--~~V~llEk~~~~a~~sS~~NSg------viHag~~y~p~slka~l~~~g~~~ 74 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPD--LSVALLEKEDGVAQESSSNNSG------VIHAGLYYTPGSLKAKLCVAGNIN 74 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCC--ceEEEEEccCccccccccCccc------ceeccccCCCcchhhHHHHHHHHH
Confidence 46999999999999999999999876 9999999999998664443221 11111111111
Q ss_pred -----------------------hhcchhHHHhhhhhhhcCcc-ccccccc-----ccccccCCCcceEEcCCC------
Q psy12489 68 -----------------------PDFLSNHTDIYQPLLDEKLL-EPFTANI-----IGYKSRKKNVTHYVTPQG------ 112 (365)
Q Consensus 68 -----------------------~~~~~~~~~~~~~l~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~g------ 112 (365)
.+-...++.+++.+..+++. ..+.... +.........+.|.+..|
T Consensus 75 ~~~~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~ 154 (429)
T COG0579 75 EFAICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGE 154 (429)
T ss_pred HHHHHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHH
Confidence 00001112222222222221 0000000 000000011223333333
Q ss_pred -hHHHHHHHHhhCCCceEEEeeeeEEeeecCCCC-cEEEEecCCCe-eecCEEEEcCCh
Q psy12489 113 -SSSIVKYFLNKSNIDEICYNTFLETMAKTDSTN-QIEVTSKEGKK-GIFDIVVLSMPA 168 (365)
Q Consensus 113 -~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~-~~~v~~~~g~~-~~~d~vV~a~p~ 168 (365)
+.++++.+.++ | +++++|++|+.|++.+ + .+.+.+.+|++ ++|+.||.|.+.
T Consensus 155 ~t~~l~e~a~~~-g-~~i~ln~eV~~i~~~~--dg~~~~~~~~g~~~~~ak~Vin~AGl 209 (429)
T COG0579 155 LTRALAEEAQAN-G-VELRLNTEVTGIEKQS--DGVFVLNTSNGEETLEAKFVINAAGL 209 (429)
T ss_pred HHHHHHHHHHHc-C-CEEEecCeeeEEEEeC--CceEEEEecCCcEEEEeeEEEECCch
Confidence 23455544444 7 9999999999999988 7 46778888866 999999999985
No 85
>PRK11445 putative oxidoreductase; Provisional
Probab=99.36 E-value=4.8e-10 Score=104.25 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=76.6
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQP 80 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~ 80 (365)
|.||+|||||+||+++|+.|+++ ++|+|+|+.+.++-.-.. .. .|. .++ +... +.++.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-----~~V~liE~~~~~~~~~~~-~~---------~g~-~l~--~~~~----~~L~~ 58 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-----MKVIAIDKKHQCGTEGFS-KP---------CGG-LLA--PDAQ----KSFAK 58 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-----CCEEEEECCCcccccccc-Cc---------CcC-ccC--HHHH----HHHHH
Confidence 78999999999999999999986 699999998754210000 00 000 011 1111 11211
Q ss_pred hhhc---Cccccccc-ccccccc-----cCCCcceE-EcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEE
Q psy12489 81 LLDE---KLLEPFTA-NIIGYKS-----RKKNVTHY-VTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVT 150 (365)
Q Consensus 81 l~~~---~~~~~~~~-~~~~~~~-----~~~~~~~~-~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~ 150 (365)
+.-. ........ ....+.. .......+ ..+..+..++.... ..+ +++++++.|++++..+ ++|.+.
T Consensus 59 lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~g-v~v~~~~~v~~i~~~~--~~~~v~ 134 (351)
T PRK11445 59 DGLTLPKDVIANPQIFAVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PAS-VEVYHNSLCRKIWRED--DGYHVI 134 (351)
T ss_pred cCCCCCcceeeccccceeeEecccccchhhcCCCcccccHHHHHHHHHHHH-hcC-CEEEcCCEEEEEEEcC--CEEEEE
Confidence 1100 00000000 0000000 00000111 11223334443333 236 8999999999999887 788877
Q ss_pred e-cCCC--eeecCEEEEcCCh
Q psy12489 151 S-KEGK--KGIFDIVVLSMPA 168 (365)
Q Consensus 151 ~-~~g~--~~~~d~vV~a~p~ 168 (365)
+ .+|+ +++||.||.|.+.
T Consensus 135 ~~~~g~~~~i~a~~vV~AdG~ 155 (351)
T PRK11445 135 FRADGWEQHITARYLVGADGA 155 (351)
T ss_pred EecCCcEEEEEeCEEEECCCC
Confidence 5 4564 6889999999875
No 86
>PRK06185 hypothetical protein; Provisional
Probab=99.36 E-value=4.4e-10 Score=106.73 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=31.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
.||+|||||++|+++|+.|+++| ++|+|+|+...
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G----~~v~liE~~~~ 40 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAG----VDVTVLEKHAD 40 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC----CcEEEEecCCc
Confidence 59999999999999999999998 99999999753
No 87
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.35 E-value=2.2e-10 Score=109.69 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=34.8
Q ss_pred ceEEEeeeeEEeeec-----CCCCcEEEEecCCCeeecCEEEEcCChh
Q psy12489 127 DEICYNTFLETMAKT-----DSTNQIEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 127 ~~i~~~~~V~~i~~~-----~~~~~~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
++++++++|++++.. ++.+++.+++.+|++++||.||.|-+..
T Consensus 135 v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~ 182 (437)
T TIGR01989 135 VKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSN 182 (437)
T ss_pred eEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCC
Confidence 789999999999752 1115688888899999999999997753
No 88
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.34 E-value=6e-10 Score=105.25 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=32.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
.||+|||||++||++|+.|+++| ++|+|+|+...
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G----~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAG----IDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcC----CCEEEEEcCCc
Confidence 59999999999999999999998 99999999874
No 89
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.5e-11 Score=117.08 Aligned_cols=130 Identities=23% Similarity=0.341 Sum_probs=89.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCcee-EEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIH-ITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQP 80 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~-v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~ 80 (365)
.||+|||||++||++|++|+++| .+ ++||||++++||.....++ +++..+.....+.. +.+.
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g----~~~~~i~Ek~~~~Gg~W~~~ry---~~l~~~~p~~~~~~-~~~p--------- 71 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAG----VPDFVIFEKRDDVGGTWRYNRY---PGLRLDSPKWLLGF-PFLP--------- 71 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcC----CCcEEEEEccCCcCCcchhccC---CceEECCchheecc-CCCc---------
Confidence 59999999999999999999998 66 9999999999998666655 34455543332211 1000
Q ss_pred hhhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCC-ceEEEeeeeEEeeecCCCCcEEEEecCCCee--
Q psy12489 81 LLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNI-DEICYNTFLETMAKTDSTNQIEVTSKEGKKG-- 157 (365)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~-~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~-- 157 (365)
.+|.. .|........++...++.++. -.|.++++|+.++.+.+++.|.|++.++.+.
T Consensus 72 -------~~~~~-------------~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~ 131 (443)
T COG2072 72 -------FRWDE-------------AFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGEL 131 (443)
T ss_pred -------cCCcc-------------cCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeE
Confidence 00121 111112234555555555551 4789999999988887556799999988664
Q ss_pred ecCEEEEcCCh
Q psy12489 158 IFDIVVLSMPA 168 (365)
Q Consensus 158 ~~d~vV~a~p~ 168 (365)
.||+||+|++.
T Consensus 132 ~a~~vV~ATG~ 142 (443)
T COG2072 132 TADFVVVATGH 142 (443)
T ss_pred ecCEEEEeecC
Confidence 49999999874
No 90
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.33 E-value=3.7e-10 Score=108.78 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=34.0
Q ss_pred hCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCCh
Q psy12489 123 KSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 123 ~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~ 168 (365)
+.| ++|+.+++|++|+. + +.+.|.+.+| ++.||+||+|+..
T Consensus 195 ~~G-v~i~~~t~V~~i~~-~--~~~~v~t~~g-~v~A~~VV~Atga 235 (460)
T TIGR03329 195 ELG-VEIHENTPMTGLEE-G--QPAVVRTPDG-QVTADKVVLALNA 235 (460)
T ss_pred HcC-CEEECCCeEEEEee-C--CceEEEeCCc-EEECCEEEEcccc
Confidence 458 99999999999975 4 5577888777 6899999999874
No 91
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.33 E-value=1.7e-10 Score=116.00 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=41.1
Q ss_pred HHHHHHHhhC--CCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChh
Q psy12489 115 SIVKYFLNKS--NIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 115 ~l~~~l~~~~--g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
.+++.|.+.. | ++++++++|++++..+ ++|.|.+.+|..+.+|.||+|++..
T Consensus 409 ~l~~aL~~~a~~G-v~i~~~~~V~~i~~~~--~~~~v~t~~g~~~~ad~VV~A~G~~ 462 (662)
T PRK01747 409 ELCRALLALAGQQ-LTIHFGHEVARLERED--DGWQLDFAGGTLASAPVVVLANGHD 462 (662)
T ss_pred HHHHHHHHhcccC-cEEEeCCEeeEEEEeC--CEEEEEECCCcEEECCEEEECCCCC
Confidence 4555554322 6 8999999999999877 7898888888777899999999853
No 92
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.33 E-value=3.2e-10 Score=106.92 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=30.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
.||+|||||+||+++|+.|+++| ++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G----~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAG----IETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC----CcEEEEECC
Confidence 48999999999999999999998 999999997
No 93
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.32 E-value=5.2e-10 Score=105.58 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=74.7
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhhh
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPLL 82 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l~ 82 (365)
||+|||||+||+++|+.|++.| ++|+|+|+++..|+.. ....+....-+.+ ++.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g----~~v~liE~~~~~~~~~---~~~~~~~~~~~~~-----------------~~~~~ 56 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG----LRVQLIEPHPPIPGNH---TYGVWDDDLSDLG-----------------LADCV 56 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC----CeEEEEccCCCCCCCc---cccccHhhhhhhc-----------------hhhHH
Confidence 8999999999999999999997 9999999987666431 1110000000000 00111
Q ss_pred hcCccccccccc----ccccccCCCcceEEcCCChHHHHHHHH---hhCCCceEEEeeeeEEeeec-CCCCcEEEEecCC
Q psy12489 83 DEKLLEPFTANI----IGYKSRKKNVTHYVTPQGSSSIVKYFL---NKSNIDEICYNTFLETMAKT-DSTNQIEVTSKEG 154 (365)
Q Consensus 83 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~l~~~l~---~~~g~~~i~~~~~V~~i~~~-~~~~~~~v~~~~g 154 (365)
. ..|.... ...... .... |.... -..+.+.|. .+.+ +++. ..+|..++.+ + +.+.|++.+|
T Consensus 57 ~----~~~~~~~~~~~~~~~~~-~~~~-~~~i~-~~~l~~~l~~~~~~~g-v~~~-~~~v~~i~~~~~--~~~~v~~~~g 125 (388)
T TIGR01790 57 E----HVWPDVYEYRFPKQPRK-LGTA-YGSVD-STRLHEELLQKCPEGG-VLWL-ERKAIHAEADGV--ALSTVYCAGG 125 (388)
T ss_pred h----hcCCCceEEecCCcchh-cCCc-eeEEc-HHHHHHHHHHHHHhcC-cEEE-ccEEEEEEecCC--ceeEEEeCCC
Confidence 0 1121100 000000 0111 11111 122333332 2336 7774 6688888876 4 6688888888
Q ss_pred CeeecCEEEEcCChh
Q psy12489 155 KKGIFDIVVLSMPAP 169 (365)
Q Consensus 155 ~~~~~d~vV~a~p~~ 169 (365)
.+++|+.||.|++..
T Consensus 126 ~~~~a~~VI~A~G~~ 140 (388)
T TIGR01790 126 QRIQARLVIDARGFG 140 (388)
T ss_pred CEEEeCEEEECCCCc
Confidence 889999999999864
No 94
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.31 E-value=5.3e-10 Score=110.12 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=44.0
Q ss_pred HHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCCh
Q psy12489 114 SSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 114 ~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~ 168 (365)
..|.+.|.+.++...++++++|++++..+ +++++++.+|+++.+|.||.|-+.
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~--d~VtV~~~dG~ti~aDlVVGADG~ 246 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFEDSG--DKVTVVLENGQRYEGDLLVGADGI 246 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEEeC--CEEEEEECCCCEEEcCEEEECCCC
Confidence 46777777777623478899999999887 889999999988999999999875
No 95
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.29 E-value=4.5e-10 Score=106.41 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=32.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
.+|+|||||++||++|+.|+++| ++|+|+|+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G----~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG----WAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC----CcEEEEecCCcc
Confidence 48999999999999999999998 999999998654
No 96
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.29 E-value=1.6e-11 Score=119.00 Aligned_cols=140 Identities=17% Similarity=0.273 Sum_probs=85.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||+|||++|..|.+.| +++++||+++.+||......... .|.. . .++.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g----~~~~~fE~~~~iGG~W~~~~~~~-------~g~~--~-----------~y~sl 57 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG----LEVTCFEKSDDIGGLWRYTENPE-------DGRS--S-----------VYDSL 57 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-----EEEEEESSSSSSGGGCHSTTCC-------CSEG--G-----------GSTT-
T ss_pred CEEEEECccHHHHHHHHHHHHCC----CCCeEEecCCCCCccCeeCCcCC-------CCcc--c-----------cccce
Confidence 68999999999999999999998 99999999999999865433211 0110 0 00111
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCC-ceEEEeeeeEEeeecCC---CCcEEEEecCC-C-
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNI-DEICYNTFLETMAKTDS---TNQIEVTSKEG-K- 155 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~-~~i~~~~~V~~i~~~~~---~~~~~v~~~~g-~- 155 (365)
..+ ..+ ....|.+++. ....+.|.....+.++++..++..+- ..|++||+|++|++.++ +++|.|++.++ +
T Consensus 58 ~~n-~sk-~~~~fsdfp~-p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~ 134 (531)
T PF00743_consen 58 HTN-TSK-EMMAFSDFPF-PEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKE 134 (531)
T ss_dssp B-S-S-G-GGSCCTTS-H-CCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEE
T ss_pred EEe-eCc-hHhcCCCcCC-CCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeE
Confidence 000 000 0000111111 12334465555677788888887651 37999999999988651 13599988643 2
Q ss_pred -eeecCEEEEcCCh
Q psy12489 156 -KGIFDIVVLSMPA 168 (365)
Q Consensus 156 -~~~~d~vV~a~p~ 168 (365)
+..+|+||+|++.
T Consensus 135 ~~~~fD~VvvatG~ 148 (531)
T PF00743_consen 135 ETEEFDAVVVATGH 148 (531)
T ss_dssp EEEEECEEEEEE-S
T ss_pred EEEEeCeEEEcCCC
Confidence 3569999999874
No 97
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.26 E-value=8.3e-10 Score=104.11 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=32.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
.||+|||||++|+++|+.|+++| ++|+|||+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G----~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAG----IDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCC----CCEEEEECCCC
Confidence 59999999999999999999998 99999999874
No 98
>KOG2820|consensus
Probab=99.26 E-value=3e-09 Score=93.57 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=45.5
Q ss_pred HHHHHhhCCCceEEEeeeeEEeeecCC-CCcEEEEecCCCeeecCEEEEcCChhhHHHhhcc
Q psy12489 117 VKYFLNKSNIDEICYNTFLETMAKTDS-TNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNR 177 (365)
Q Consensus 117 ~~~l~~~~g~~~i~~~~~V~~i~~~~~-~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~ 177 (365)
++-.+.++| +.++.+..|..++..++ +..+.|.|.+|..+.++.+|+|+++ .+.++|+.
T Consensus 159 ~~~~~~~~G-~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~Ga-Wi~klL~~ 218 (399)
T KOG2820|consen 159 LQDKARELG-VIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGA-WINKLLPT 218 (399)
T ss_pred HHHHHHHcC-eEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecH-HHHhhcCc
Confidence 333445678 99999999999985542 1457899999988999999999994 56677764
No 99
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.24 E-value=4.1e-09 Score=100.74 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=31.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.||+|||||+||+++|+.|+++| ++|+|+|+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G----~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGG----IETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC----CcEEEEecCC
Confidence 59999999999999999999998 9999999974
No 100
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.21 E-value=2.6e-09 Score=101.37 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=47.4
Q ss_pred EEcCCChHHHHHHHH---hhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcC
Q psy12489 107 YVTPQGSSSIVKYFL---NKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSM 166 (365)
Q Consensus 107 ~~~~~g~~~l~~~l~---~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~ 166 (365)
..+..|+..+.++++ +..| +.++++++|++|..++++..+.|++.+|++++|+.||+..
T Consensus 225 ~yp~gG~g~L~qal~r~~a~~G-g~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~ 286 (443)
T PTZ00363 225 IYPLYGLGGLPQAFSRLCAIYG-GTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDP 286 (443)
T ss_pred eeeCCCHHHHHHHHHHHHHHcC-cEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECc
Confidence 445789999999997 4568 9999999999998765112367889899999999999853
No 101
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.20 E-value=6.3e-09 Score=103.64 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=31.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHh-cCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQK-LLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~-g~~~~~~v~v~E~~~~ 39 (365)
.||+|||||++||++|+.|++. | ++|+|||+...
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~G----i~v~IiE~~~~ 67 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPD----ITTRIVERKPG 67 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCC----CcEEEEEcCCC
Confidence 4899999999999999999994 7 99999999753
No 102
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.19 E-value=4.6e-09 Score=99.02 Aligned_cols=205 Identities=14% Similarity=0.025 Sum_probs=99.0
Q ss_pred HHHHHHHh---hCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHH
Q psy12489 115 SIVKYFLN---KSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQV 191 (365)
Q Consensus 115 ~l~~~l~~---~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~ 191 (365)
.+++.+++ +.|...+..+++|..++..+ ..+.|.+.+|. +.+|+||+|+... +..+.....
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~--~~~~v~t~~g~-i~a~~vv~a~G~~-~~~l~~~~~------------ 220 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLERDG--RVVGVETDGGT-IEADKVVLAAGAW-AGELAATLG------------ 220 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEecC--cEEEEEeCCcc-EEeCEEEEcCchH-HHHHHHhcC------------
Confidence 44444443 23413566799999998762 46788888886 9999999999843 333222110
Q ss_pred hhcCCccceeEEEEeccCCCCCCcc----eEEecCCCcEEEeeecCCCCCCCCCCceEEEEeChhhhh-hhcCCCCchhh
Q psy12489 192 LLDVEYSSRYAFGMFFDKQFERPFD----IKYFDDNEIIRYISFDNVKRNRPDEPISVCVHTTTQYYN-SFLDSETPRNV 266 (365)
Q Consensus 192 ~~~~~~~~~~~v~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ 266 (365)
.-.++..+...-.+.++........ ....... .-.++... ....+.+........ ...+...++.
T Consensus 221 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~--------~~g~~~~g~~~~~~~~~~~~~~~~~~- 290 (387)
T COG0665 221 ELPLPLRPVRGQALTTEPPEGLLADGLAPVVLVVDD-GGGYIRPR--------GDGRLRVGGTDEEGGDDPSDPEREDL- 290 (387)
T ss_pred CCcCccccccceEEEecCCCccccccccceEEEecC-CceEEEEc--------CCCcEEEeecccccCCCCccccCcch-
Confidence 0112233333323333322110000 1111111 11222211 012344433332211 0111111110
Q ss_pred HHHHHHHHHHhHCCCCCCCceEeeecCCCCCCcCCCCCccccee-ecCCCeEEEecccccCCCchhHHHHHHHHHHhhhh
Q psy12489 267 IERELLDLIRKMFPSWPLPAETKLQTWKYSQVVDPHRDKLGFMQ-FSAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASM 345 (365)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~rw~~a~~~~~~~~~~~~~~-~~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~ 345 (365)
....+++.+.+++|.+..... .+.|.-..+.......| .+- ..+.+++|++.-+.. -++--+-..|+.+|+.|+
T Consensus 291 ~~~~l~~~~~~~~P~l~~~~~--~~~w~g~~~~t~pd~~P-~iG~~~~~~~l~~a~G~~~--~G~~~~p~~g~~lA~li~ 365 (387)
T COG0665 291 VIAELLRVARALLPGLADAGI--EAAWAGLRPPTTPDGLP-VIGRAAPLPNLYVATGHGG--HGFTLAPALGRLLADLIL 365 (387)
T ss_pred hHHHHHHHHHHhCcccccccc--ceeeeccccCCCCCCCc-eeCCCCCCCCEEEEecCCC--cChhhccHHHHHHHHHHc
Confidence 246788889999986543221 12565444432111111 222 111467777743322 477778889999999999
Q ss_pred ccchh
Q psy12489 346 VGKHW 350 (365)
Q Consensus 346 ~~~~~ 350 (365)
.+...
T Consensus 366 g~~~~ 370 (387)
T COG0665 366 GGEPE 370 (387)
T ss_pred CCCCC
Confidence 86554
No 103
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.18 E-value=5.3e-09 Score=98.86 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=31.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
.||+|||||++|+++|+.|+++| ++|+|+|+....
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G----~~V~llE~~~~~ 35 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAG----IQTFLLERKPDN 35 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC----CcEEEEecCCCC
Confidence 48999999999999999999998 999999997543
No 104
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.17 E-value=1.9e-08 Score=94.13 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=31.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
.||+|||||++|+++|+.|+++| .+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G----~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRG----LSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CeEEEEeCCCC
Confidence 48999999999999999999998 99999999763
No 105
>KOG1399|consensus
Probab=99.15 E-value=2.5e-10 Score=107.49 Aligned_cols=141 Identities=16% Similarity=0.261 Sum_probs=87.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||+|||++|+.|.+.| ++++||||++.+||......... +..+. +++.+
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g----~~v~vfEr~~~iGGlW~y~~~~~------~~~ss--------------~Y~~l 62 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREG----HEVVVFERTDDIGGLWKYTENVE------VVHSS--------------VYKSL 62 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCC----CCceEEEecCCccceEeecCccc------ccccc--------------hhhhh
Confidence 58999999999999999999998 99999999999998755443210 11111 01111
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCC-CceEEEeeeeEEeeecCCCCcEEEEecCC----Ce
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSN-IDEICYNTFLETMAKTDSTNQIEVTSKEG----KK 156 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g-~~~i~~~~~V~~i~~~~~~~~~~v~~~~g----~~ 156 (365)
.. ++.++.. .+.+++........|.....+-.+++..++.++ ...|++++.|..++..++ +.|.|.+.++ ..
T Consensus 63 ~t-n~pKe~~-~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~~~~ 139 (448)
T KOG1399|consen 63 RT-NLPKEMM-GYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQIEE 139 (448)
T ss_pred hc-cCChhhh-cCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcceeE
Confidence 10 0000000 001111111112223333355667777777665 137999999999987761 3799988665 24
Q ss_pred eecCEEEEcCChh
Q psy12489 157 GIFDIVVLSMPAP 169 (365)
Q Consensus 157 ~~~d~vV~a~p~~ 169 (365)
.-+|.||+|++..
T Consensus 140 ~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 140 EIFDAVVVCTGHY 152 (448)
T ss_pred EEeeEEEEcccCc
Confidence 6699999998754
No 106
>PRK09897 hypothetical protein; Provisional
Probab=99.15 E-value=4.5e-10 Score=108.63 Aligned_cols=154 Identities=17% Similarity=0.217 Sum_probs=85.4
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-ccceeecCCCCCCeeeecccceeecChhcchhHHHhhh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPG-GRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQ 79 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~g-gr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~ 79 (365)
|++|+|||||++|+++|..|.+.+.. .+|+|||++..+| |...+.... ...+..+.........+ .-+.
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~--l~V~lfEp~~~~G~G~ays~~~~-~~~L~~N~~~~~~p~~~-------~~f~ 70 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTP--LSISIFEQADEAGVGMPYSDEEN-SKMMLANIASIEIPPIY-------CTYL 70 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCC--CcEEEEecCCCCCcceeecCCCC-hHHHHhcccccccCCCh-------HHHH
Confidence 89999999999999999999987633 7999999998888 432222111 01112222111111110 1111
Q ss_pred hhhhcCcccccccccccccccCCCcceEEcCCC----hHHHHHHHHhhC---C-CceEEEeeeeEEeeecCCCCcEEEEe
Q psy12489 80 PLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQG----SSSIVKYFLNKS---N-IDEICYNTFLETMAKTDSTNQIEVTS 151 (365)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~l~~~l~~~~---g-~~~i~~~~~V~~i~~~~~~~~~~v~~ 151 (365)
+|...... .|... .+..........|.++.- +...++.+.+.+ | .+.++.+++|++|+..+ ++|.|++
T Consensus 71 ~Wl~~~~~-~~~~~-~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t 146 (534)
T PRK09897 71 EWLQKQED-SHLQR-YGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLAT 146 (534)
T ss_pred HHhhhhhH-HHHHh-cCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEE
Confidence 22111110 01000 000000001223444332 334444444322 2 15677899999999888 8898888
Q ss_pred cCC-CeeecCEEEEcCCh
Q psy12489 152 KEG-KKGIFDIVVLSMPA 168 (365)
Q Consensus 152 ~~g-~~~~~d~vV~a~p~ 168 (365)
.++ .++.+|.||+|++.
T Consensus 147 ~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 147 NQDLPSETFDLAVIATGH 164 (534)
T ss_pred CCCCeEEEcCEEEECCCC
Confidence 654 67899999999974
No 107
>PTZ00367 squalene epoxidase; Provisional
Probab=99.14 E-value=2e-08 Score=98.24 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=31.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.||+|||||++|+++|+.|+++| ++|+|+|+..
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G----~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQG----RKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcC----CEEEEEcccc
Confidence 48999999999999999999998 9999999964
No 108
>PLN02985 squalene monooxygenase
Probab=99.14 E-value=1e-08 Score=99.62 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=38.3
Q ss_pred CeEEEeccccc---C--CCchhHHHHHHHHHHhhhhc-----cchhhhhhhhhccCCCC
Q psy12489 315 PLVICIGDSYV---P--QSNFDGCIHSAKQTTGASMV-----GKHWMLGLLRYWENPTM 363 (365)
Q Consensus 315 ~~l~~aGd~~~---~--~~~~~gA~~SG~~aA~~l~~-----~~~~~~~~~~~~~~~~~ 363 (365)
+++.+.||+.+ | +.||..|++.+...++.|.. +..+...+|..|+..++
T Consensus 326 ~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk 384 (514)
T PLN02985 326 KGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRK 384 (514)
T ss_pred CCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhh
Confidence 57999999977 3 47999999999999998853 22345668888887664
No 109
>KOG2614|consensus
Probab=99.10 E-value=1.9e-08 Score=91.40 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=33.2
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
|.+|+|||||++||++|..|+|+| ++|+|||++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G----~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKG----IDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcC----CeEEEEeecccc
Confidence 579999999999999999999998 999999997655
No 110
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.09 E-value=9.9e-10 Score=99.75 Aligned_cols=110 Identities=22% Similarity=0.308 Sum_probs=75.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.||+|||||++|+++|..|++.| ++|+|+|+.+ +||++..... +..+|.+.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g----~~v~lie~~~-~gg~~~~~~~--------------~~~~~~~~---------- 51 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARAN----LKTLIIEGME-PGGQLTTTTE--------------VENYPGFP---------- 51 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC----CCEEEEeccC-CCcceeeccc--------------ccccCCCC----------
Confidence 48999999999999999999998 9999999986 6765332110 00001000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
.... ...+...+...+++.+ +++++ +.|++++..+ +.+.+.+.++.++.||+
T Consensus 52 ------~~~~------------------~~~~~~~l~~~~~~~g-v~~~~-~~v~~v~~~~--~~~~v~~~~~~~~~~d~ 103 (300)
T TIGR01292 52 ------EGIS------------------GPELMEKMKEQAVKFG-AEIIY-EEVIKVDLSD--RPFKVKTGDGKEYTAKA 103 (300)
T ss_pred ------CCCC------------------hHHHHHHHHHHHHHcC-CeEEE-EEEEEEEecC--CeeEEEeCCCCEEEeCE
Confidence 0000 0011122333344557 89988 8999999877 77888888888899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 104 liiAtG~ 110 (300)
T TIGR01292 104 VIIATGA 110 (300)
T ss_pred EEECCCC
Confidence 9999985
No 111
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.09 E-value=9.5e-10 Score=89.80 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=84.5
Q ss_pred EEEccCHHHHHHHHHHHHhc-CCCceeEEEEecCCCCC-ccceeecCCCCCCeeeecccceeecChhcc-hhHHHhhhhh
Q psy12489 5 LIVGSGITSALTSYLLRQKL-LTDLIHITIWDKARGPG-GRMTTSRSNVVPNCKVDLGLQYITTTPDFL-SNHTDIYQPL 81 (365)
Q Consensus 5 ~IIGaG~aGl~~A~~L~~~g-~~~~~~v~v~E~~~~~g-gr~~t~~~~~~~~~~~d~g~~~~~~~~~~~-~~~~~~~~~l 81 (365)
+|||||++|++++..|.++. .....+|+|||++. .| |........ +...++..+..++..++-. . ++.+-+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~-~G~G~~~~~~~~--~~~llN~~a~~~s~~~~~~~~---~f~~Wl 74 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP-FGAGGAYRPDQP--PSHLLNTPADQMSLFPDDPGD---DFVDWL 74 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-ccccccCCCCCC--hHHhhcccccccccccccCCC---CHHHHH
Confidence 69999999999999999884 11148999999954 45 543333211 2345555555444422110 0 112222
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCC----hHHHHHHHHhhCC-CceE-EEeeeeEEeeecCCCCcEEEEecCCC
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQG----SSSIVKYFLNKSN-IDEI-CYNTFLETMAKTDSTNQIEVTSKEGK 155 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~l~~~l~~~~g-~~~i-~~~~~V~~i~~~~~~~~~~v~~~~g~ 155 (365)
...+. .. .. ......|.++.- +....+.+.+.+. .++| +...+|+.|+..+ +++.+.+.+|.
T Consensus 75 ~~~~~-~~-~~--------~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~--~~~~v~~~~g~ 142 (156)
T PF13454_consen 75 RANGA-DE-AE--------EIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD--DGYRVVTADGQ 142 (156)
T ss_pred HhcCc-cc-cc--------ccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC--CcEEEEECCCC
Confidence 22221 00 00 011123333332 3334444444332 1333 4677999999998 88999999999
Q ss_pred eeecCEEEEcCCh
Q psy12489 156 KGIFDIVVLSMPA 168 (365)
Q Consensus 156 ~~~~d~vV~a~p~ 168 (365)
.+.+|+||+|++.
T Consensus 143 ~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 143 SIRADAVVLATGH 155 (156)
T ss_pred EEEeCEEEECCCC
Confidence 9999999999873
No 112
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.08 E-value=5e-09 Score=100.82 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=33.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPG 41 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~g 41 (365)
.||+|||||+.|+++|+.|++.++ +.+|+|+||.+.+|
T Consensus 46 ~DVvIIGGGI~G~a~A~~La~~~~--~~~V~VlEk~~~~a 83 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTLSKFTN--LKKIALIERRSDFA 83 (497)
T ss_pred ccEEEECccHHHHHHHHHHHhhCC--CCEEEEEecCcchh
Confidence 599999999999999999999753 26999999987554
No 113
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.08 E-value=4e-08 Score=95.73 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=33.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||++|+++|+.|+++| ++|+|+|+++-.+|
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG----l~V~LvEk~d~~~G 43 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRG----LSVLLCEQDDLASA 43 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC----CeEEEEecCCCCCC
Confidence 59999999999999999999998 99999999865444
No 114
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.08 E-value=5.1e-10 Score=105.71 Aligned_cols=148 Identities=18% Similarity=0.324 Sum_probs=81.2
Q ss_pred EEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecc---c---ceeecChhcchhHHHhh
Q psy12489 5 LIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG---L---QYITTTPDFLSNHTDIY 78 (365)
Q Consensus 5 ~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g---~---~~~~~~~~~~~~~~~~~ 78 (365)
+|||||+|||++|+.|+++| .+|+|+|+++.+|+.+..... ..+.+... . ..+...+.+. +..+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G----~~V~llEk~~~~G~k~~~sG~---grcn~tn~~~~~~~~~~~~~~~~~~---~~~l 70 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREG----LSVLLLEKNKKIGKKLLISGG---GRCNLTNSCPTPEFVAYYPRNGKFL---RSAL 70 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcC----CcEEEEecCccccccccccCC---ceEEccCCCcchhHHHhcCCCcHHH---HHHH
Confidence 69999999999999999998 999999999988875432221 11111110 0 0010011111 1111
Q ss_pred hhhhhcCccccccccccccccc-CCCcceEEcCCChHHHHHHHHh---hCCCceEEEeeeeEEeeecCCCCcEEEEecCC
Q psy12489 79 QPLLDEKLLEPFTANIIGYKSR-KKNVTHYVTPQGSSSIVKYFLN---KSNIDEICYNTFLETMAKTDSTNQIEVTSKEG 154 (365)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~l~~~l~~---~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g 154 (365)
..+..... ..|... .++... ......|........+.+.+.+ +.+ ++++++++|++++.++ +.+.+.+ ++
T Consensus 71 ~~~~~~d~-~~~~~~-~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~g-v~i~~~~~V~~i~~~~--~~~~v~~-~~ 144 (400)
T TIGR00275 71 SRFSNKDL-IDFFES-LGLELKVEEDGRVFPCSDSAADVLDALLNELKELG-VEILTNSKVKSIKKDD--NGFGVET-SG 144 (400)
T ss_pred HhCCHHHH-HHHHHH-cCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEecC--CeEEEEE-CC
Confidence 11100000 011110 011000 0112223222223444444433 447 8999999999998776 6777777 45
Q ss_pred CeeecCEEEEcCCh
Q psy12489 155 KKGIFDIVVLSMPA 168 (365)
Q Consensus 155 ~~~~~d~vV~a~p~ 168 (365)
.++.+|.||+|++.
T Consensus 145 ~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 145 GEYEADKVILATGG 158 (400)
T ss_pred cEEEcCEEEECCCC
Confidence 67899999999985
No 115
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.07 E-value=5.4e-08 Score=94.80 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=32.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPG 41 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~g 41 (365)
.||+|||||++|+++|+.|+++| ++|+|+|+.+-.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG----~~V~LlEk~d~~~ 42 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRG----LKVLLCEKDDLAQ 42 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCC----CcEEEEECCCCCC
Confidence 59999999999999999999998 9999999996443
No 116
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.07 E-value=5.2e-08 Score=91.31 Aligned_cols=133 Identities=16% Similarity=0.187 Sum_probs=77.0
Q ss_pred cEEEEccCHHHHHHHHHH--HHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhh
Q psy12489 3 KVLIVGSGITSALTSYLL--RQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQP 80 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L--~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~ 80 (365)
||+|||||+||+++|++| ++.| .+|+|+|+....+-. ....+.. +.-+.+. +++
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g----~~Vllid~~~~~~~~-~~~tW~~---~~~~~~~----------------~~~ 56 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPG----LSVLLIDPKPKPPWP-NDRTWCF---WEKDLGP----------------LDS 56 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCC----CEEEEEcCCcccccc-CCccccc---ccccccc----------------hHH
Confidence 899999999999999999 5554 999999998766310 1111100 0000000 111
Q ss_pred hhhcCcccccccc---cccccccCCCcceEEcCCChHHHHHHHHhh--CCCceEEEeeeeEEeeecCCCCcEEEEecCCC
Q psy12489 81 LLDEKLLEPFTAN---IIGYKSRKKNVTHYVTPQGSSSIVKYFLNK--SNIDEICYNTFLETMAKTDSTNQIEVTSKEGK 155 (365)
Q Consensus 81 l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~--~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~ 155 (365)
+.. ..|... +......... ..|.... ...+.+.+.++ .+ ..+.++++|++|+.++ +.+.+.+.+|.
T Consensus 57 ~v~----~~w~~~~v~~~~~~~~~~~-~~Y~~i~-~~~f~~~l~~~~~~~-~~~~~~~~V~~i~~~~--~~~~v~~~~g~ 127 (374)
T PF05834_consen 57 LVS----HRWSGWRVYFPDGSRILID-YPYCMID-RADFYEFLLERAAAG-GVIRLNARVTSIEETG--DGVLVVLADGR 127 (374)
T ss_pred HHh----eecCceEEEeCCCceEEcc-cceEEEE-HHHHHHHHHHHhhhC-CeEEEccEEEEEEecC--ceEEEEECCCC
Confidence 211 122211 0000000001 1111111 12333333332 24 6789999999999988 77888999999
Q ss_pred eeecCEEEEcCCh
Q psy12489 156 KGIFDIVVLSMPA 168 (365)
Q Consensus 156 ~~~~d~vV~a~p~ 168 (365)
+++|+.||-|.+.
T Consensus 128 ~i~a~~VvDa~g~ 140 (374)
T PF05834_consen 128 TIRARVVVDARGP 140 (374)
T ss_pred EEEeeEEEECCCc
Confidence 9999999999884
No 117
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.06 E-value=1.5e-09 Score=95.90 Aligned_cols=39 Identities=26% Similarity=0.503 Sum_probs=36.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
.||+|||||+||+++|+.|++.| ++|+|+|+...+||.+
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G----~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAG----LKVAVFERKLSFGGGM 64 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCC----CeEEEEecCCCCCCcc
Confidence 59999999999999999999997 9999999999888754
No 118
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.06 E-value=3.8e-09 Score=93.03 Aligned_cols=39 Identities=23% Similarity=0.482 Sum_probs=36.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
.||+|||||++||++|+.|+++| .+|+|+||+..+||.+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G----~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNG----LKVCVLERSLAFGGGS 60 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CcEEEEecCCCCCccc
Confidence 59999999999999999999998 9999999999888753
No 119
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.04 E-value=7.9e-09 Score=99.18 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=34.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+||||||+|+++|+.|++..+ +.+|+|+|+.+.+|--
T Consensus 7 ~DvvIIGgGI~G~sla~~L~~~~~--~~~V~vlEr~~~~a~~ 46 (497)
T PRK13339 7 KDVVLVGAGILSTTFGVLLKELDP--DWNIEVVERLDSPAIE 46 (497)
T ss_pred CCEEEECchHHHHHHHHHHHhCCC--CCeEEEEEcCCCcchh
Confidence 499999999999999999999943 2899999996677643
No 120
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.04 E-value=4.8e-09 Score=101.11 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=33.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||++|+++|+.|++..+ |.+|+|||+.+.+|..
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~--g~~V~VlEk~~~~a~~ 40 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEP--NWSITLIERLDAVAAE 40 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCC--CCeEEEEEcCCcchhh
Confidence 489999999999999999999822 2999999998766643
No 121
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.03 E-value=4.9e-09 Score=101.20 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=34.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
.||+|||||+.|+++|++|++.++ +.+|+|+||.+.+|+..
T Consensus 6 ~DVvIIGgGIiG~slA~~L~~~~~--g~~V~VlEk~~~~a~~s 46 (494)
T PRK05257 6 TDVVLIGGGIMSATLGTLLKELEP--EWSITMFERLDGVALES 46 (494)
T ss_pred ceEEEECcHHHHHHHHHHHHHhCC--CCeEEEEEcCCchhhhc
Confidence 599999999999999999999743 28999999987666443
No 122
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.01 E-value=4.9e-08 Score=95.88 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=31.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
.||+|||||++|+++|+.|+++| ++|+|+|+++-
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG----~~V~LlEk~d~ 40 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRG----LRCILVERHDI 40 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcC----CeEEEEECCCC
Confidence 59999999999999999999998 99999999753
No 123
>PLN02697 lycopene epsilon cyclase
Probab=98.96 E-value=2.4e-07 Score=89.81 Aligned_cols=33 Identities=6% Similarity=0.089 Sum_probs=30.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.||+|||||+||+++|+.|++.| ++|+|+|+..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~G----l~V~LIe~~~ 141 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLG----LNVGLIGPDL 141 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC----CcEEEecCcc
Confidence 59999999999999999999998 9999999853
No 124
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.96 E-value=5.5e-10 Score=106.43 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=37.5
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhhh
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPLL 82 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l~ 82 (365)
||+|||||++|++||+.++++| .+|+|+|+...+||........ .++ +... . ..........+++.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G----~~VlLiE~~~~lGG~~t~~~~~-----~~~-~~~~-~-~~~~~gi~~e~~~~~~ 68 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG----AKVLLIEKGGFLGGMATSGGVS-----PFD-GNHD-E-DQVIGGIFREFLNRLR 68 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT----S-EEEE-SSSSSTGGGGGSSS------EET-TEEH-H-HHHHHHHHHHHHHST-
T ss_pred CEEEECccHHHHHHHHHHHHCC----CEEEEEECCccCCCcceECCcC-----Chh-hcch-h-hccCCCHHHHHHHHHh
Confidence 8999999999999999999998 9999999999999975443321 111 1000 0 0000000112222222
Q ss_pred hcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcE-EEEec--CC-Ceee
Q psy12489 83 DEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQI-EVTSK--EG-KKGI 158 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~-~v~~~--~g-~~~~ 158 (365)
..+.. .+... .+ ........+..+..+++.++++.| ++|++++.|.++..++ +++ .|... +| .++.
T Consensus 69 ~~~~~-~~~~~-~~-----~~~~~~~~~~~~~~~l~~~l~e~g-v~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~ 138 (428)
T PF12831_consen 69 ARGGY-PQEDR-YG-----WVSNVPFDPEVFKAVLDEMLAEAG-VEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIR 138 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccc-ccccc-cc-----cccccccccccccccccccccccc-cccccccccccccccc--cccccccccccccccccc
Confidence 21111 00000 00 000011222344566666666668 9999999999998876 553 34443 34 4789
Q ss_pred cCEEEEcCChhhHHHh
Q psy12489 159 FDIVVLSMPAPQVTDL 174 (365)
Q Consensus 159 ~d~vV~a~p~~~~~~l 174 (365)
|+.+|-|+.-..+..+
T Consensus 139 A~~~IDaTG~g~l~~~ 154 (428)
T PF12831_consen 139 AKVFIDATGDGDLAAL 154 (428)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 9999999985555544
No 125
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.95 E-value=3.4e-08 Score=100.70 Aligned_cols=46 Identities=15% Similarity=0.056 Sum_probs=36.1
Q ss_pred EEEeccccc---C--CCchhHHHHHHHHHHhhhhccchhhhhhhhhccCCC
Q psy12489 317 VICIGDSYV---P--QSNFDGCIHSAKQTTGASMVGKHWMLGLLRYWENPT 362 (365)
Q Consensus 317 l~~aGd~~~---~--~~~~~gA~~SG~~aA~~l~~~~~~~~~~~~~~~~~~ 362 (365)
+.++||..+ | +.++..|++++...|+.|.....+.-.+|..|++.+
T Consensus 271 v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~al~~ye~~R 321 (765)
T PRK08255 271 VVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHPGDLPAALAAYEEER 321 (765)
T ss_pred EEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 999999977 3 359999999999999999754335666888887654
No 126
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.89 E-value=1.4e-08 Score=99.28 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=76.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.||+|||||++|+++|.+|++.| ++|+|+|. ++||++..... ++ .+.
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G----~~v~li~~--~~GG~~~~~~~-------~~----------~~~---------- 258 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKG----IRTGIVAE--RFGGQVLDTMG-------IE----------NFI---------- 258 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CcEEEEec--CCCCeeeccCc-------cc----------ccC----------
Confidence 59999999999999999999998 99999986 37876432100 00 000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
++ .+. ....+...++..++.++ ++++++++|.+|+..+ +.+.+.+.+|.++.+|.
T Consensus 259 ---~~--~~~-----------------~~~~l~~~l~~~~~~~g-v~i~~~~~V~~I~~~~--~~~~V~~~~g~~i~a~~ 313 (517)
T PRK15317 259 ---SV--PET-----------------EGPKLAAALEEHVKEYD-VDIMNLQRASKLEPAA--GLIEVELANGAVLKAKT 313 (517)
T ss_pred ---CC--CCC-----------------CHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEecC--CeEEEEECCCCEEEcCE
Confidence 00 000 00112233333444568 9999999999998877 77888888888899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 314 vViAtG~ 320 (517)
T PRK15317 314 VILATGA 320 (517)
T ss_pred EEECCCC
Confidence 9999985
No 127
>PLN02463 lycopene beta cyclase
Probab=98.89 E-value=2e-08 Score=95.75 Aligned_cols=134 Identities=11% Similarity=0.124 Sum_probs=74.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.||+|||||+||+++|+.|+++| ++|+|+|++....- .+.. |. |. ..+. .+ .+.+.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~G----l~V~liE~~~~~~~---p~~~----------g~-w~---~~l~-~l-gl~~~l 85 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAG----LSVCCIDPSPLSIW---PNNY----------GV-WV---DEFE-AL-GLLDCL 85 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCC----CeEEEeccCccchh---cccc----------ch-HH---HHHH-HC-CcHHHH
Confidence 59999999999999999999997 99999999653210 0000 00 00 0000 00 000000
Q ss_pred hhcCcccccccc---cccccccCCCcce-EEcCCChHH-HHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCe
Q psy12489 82 LDEKLLEPFTAN---IIGYKSRKKNVTH-YVTPQGSSS-IVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKK 156 (365)
Q Consensus 82 ~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~g~~~-l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~ 156 (365)
...|... +..........+. ...+..+.. +.+.+. +.| ++++ +.+|++|+..+ +++.|++.+|.+
T Consensus 86 -----~~~w~~~~v~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~-~~G-V~~~-~~~V~~I~~~~--~~~~V~~~dG~~ 155 (447)
T PLN02463 86 -----DTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCI-ANG-VQFH-QAKVKKVVHEE--SKSLVVCDDGVK 155 (447)
T ss_pred -----HhhCCCcEEEEeCCCCccccCcceeEEHHHHHHHHHHHHh-hcC-CEEE-eeEEEEEEEcC--CeEEEEECCCCE
Confidence 0112110 0000000000011 111112222 223222 336 7775 67999999887 788899999989
Q ss_pred eecCEEEEcCCh
Q psy12489 157 GIFDIVVLSMPA 168 (365)
Q Consensus 157 ~~~d~vV~a~p~ 168 (365)
++||.||.|.+.
T Consensus 156 i~A~lVI~AdG~ 167 (447)
T PLN02463 156 IQASLVLDATGF 167 (447)
T ss_pred EEcCEEEECcCC
Confidence 999999999975
No 128
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.86 E-value=1.6e-08 Score=94.47 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=77.2
Q ss_pred cEEEEccCHHHHHHHHHHHHh--cCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhh
Q psy12489 3 KVLIVGSGITSALTSYLLRQK--LLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQP 80 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~--g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~ 80 (365)
||+|||||+||+++|+.|+++ | ++|+|+|++..+||. .+..+ +..+.+.. . ...++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g----~~V~lle~~~~~~~~-~tw~~-----~~~~~~~~-------~----~~~~~~ 59 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPD----FRIRVIEAGRTIGGN-HTWSF-----FDSDLSDA-------Q----HAWLAD 59 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCC----CeEEEEeCCCCCCCc-cccee-----cccccchh-------h----hhhhhh
Confidence 899999999999999999987 6 999999998877753 11111 01111100 0 011222
Q ss_pred hhhcCcccccccc---cccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCee
Q psy12489 81 LLDEKLLEPFTAN---IIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKG 157 (365)
Q Consensus 81 l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~ 157 (365)
+.. ..|... +.+.... ...+ |.... ...+.+.+.+.++ ..+.++++|+++ +. +++.+ .+|+++
T Consensus 60 ~v~----~~W~~~~v~~~~~~~~-l~~~-Y~~I~-r~~f~~~l~~~l~-~~i~~~~~V~~v--~~--~~v~l--~dg~~~ 125 (370)
T TIGR01789 60 LVQ----TDWPGYEVRFPKYRRK-LKTA-YRSMT-STRFHEGLLQAFP-EGVILGRKAVGL--DA--DGVDL--APGTRI 125 (370)
T ss_pred hhe----EeCCCCEEECcchhhh-cCCC-ceEEE-HHHHHHHHHHhhc-ccEEecCEEEEE--eC--CEEEE--CCCCEE
Confidence 211 223221 1000000 0111 11111 1467777777666 558889999999 33 45555 678899
Q ss_pred ecCEEEEcCCh
Q psy12489 158 IFDIVVLSMPA 168 (365)
Q Consensus 158 ~~d~vV~a~p~ 168 (365)
+||.||.|.+.
T Consensus 126 ~A~~VI~A~G~ 136 (370)
T TIGR01789 126 NARSVIDCRGF 136 (370)
T ss_pred EeeEEEECCCC
Confidence 99999999884
No 129
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.2e-08 Score=90.27 Aligned_cols=105 Identities=18% Similarity=0.317 Sum_probs=69.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCcee-EEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIH-ITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQP 80 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~-v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~ 80 (365)
.||+|||||++||+||.++++++ .+ ++|+|+. .+||....... .
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~----l~~~li~~~~-~~gg~~~~~~~--------------v---------------- 48 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAG----LKVVLILEGG-EPGGQLTKTTD--------------V---------------- 48 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcC----CCcEEEEecC-CcCCcccccee--------------e----------------
Confidence 69999999999999999999998 88 5666654 46644222110 0
Q ss_pred hhhcCcccccccccccccccCCCcceEEc-CCChHHHHHHH---HhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCe
Q psy12489 81 LLDEKLLEPFTANIIGYKSRKKNVTHYVT-PQGSSSIVKYF---LNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKK 156 (365)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~l~~~l---~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~ 156 (365)
..|.. +.. ..| ..+.+.+ ++..+ .++.. ..|.+++..+ +.+.|.+.++.
T Consensus 49 -------enypg--------------~~~~~~g-~~L~~~~~~~a~~~~-~~~~~-~~v~~v~~~~--~~F~v~t~~~~- 101 (305)
T COG0492 49 -------ENYPG--------------FPGGILG-PELMEQMKEQAEKFG-VEIVE-DEVEKVELEG--GPFKVKTDKGT- 101 (305)
T ss_pred -------cCCCC--------------CccCCch-HHHHHHHHHHHhhcC-eEEEE-EEEEEEeecC--ceEEEEECCCe-
Confidence 11110 000 011 1222222 33456 67666 8888888766 57889999887
Q ss_pred eecCEEEEcCCh
Q psy12489 157 GIFDIVVLSMPA 168 (365)
Q Consensus 157 ~~~d~vV~a~p~ 168 (365)
++|+.||+|++.
T Consensus 102 ~~ak~vIiAtG~ 113 (305)
T COG0492 102 YEAKAVIIATGA 113 (305)
T ss_pred EEEeEEEECcCC
Confidence 999999999984
No 130
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.85 E-value=2.2e-08 Score=97.85 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=75.1
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQP 80 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~ 80 (365)
++||+|||||++|+++|..|++.| ++|+|+|. ++||+..... +.+ ++.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G----~~v~li~~--~~GG~~~~~~-----------~~~------~~~--------- 259 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKG----LRTAMVAE--RIGGQVKDTV-----------GIE------NLI--------- 259 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC----CcEEEEec--CCCCccccCc-----------Ccc------ccc---------
Confidence 369999999999999999999998 99999975 5777632110 000 000
Q ss_pred hhhcCcccccccccccccccCCCcceEEcCCC-hHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeec
Q psy12489 81 LLDEKLLEPFTANIIGYKSRKKNVTHYVTPQG-SSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIF 159 (365)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~ 159 (365)
+ +.. ..... ...+.+.+ ++++ ++++++++|.+|+..+ +.+.+++.+|.++.+
T Consensus 260 ----~----~~~---------------~~~~~l~~~l~~~l-~~~g-v~i~~~~~V~~I~~~~--~~~~v~~~~g~~i~~ 312 (515)
T TIGR03140 260 ----S----VPY---------------TTGSQLAANLEEHI-KQYP-IDLMENQRAKKIETED--GLIVVTLESGEVLKA 312 (515)
T ss_pred ----c----cCC---------------CCHHHHHHHHHHHH-HHhC-CeEEcCCEEEEEEecC--CeEEEEECCCCEEEe
Confidence 0 000 00000 12333333 3457 9999999999998876 678888888888999
Q ss_pred CEEEEcCCh
Q psy12489 160 DIVVLSMPA 168 (365)
Q Consensus 160 d~vV~a~p~ 168 (365)
|+||+|++.
T Consensus 313 d~lIlAtGa 321 (515)
T TIGR03140 313 KSVIVATGA 321 (515)
T ss_pred CEEEECCCC
Confidence 999999985
No 131
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.83 E-value=2.2e-08 Score=97.58 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=35.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+|++|+++|+.++++| .+|+||||...+||.
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~G----a~VivlEK~~~~GG~ 99 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAG----MNPVILEKMPVAGGN 99 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC----CCEEEEECCCCCCCc
Confidence 49999999999999999999998 999999999988875
No 132
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.83 E-value=1e-07 Score=88.27 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=37.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||++|||||.|.++++.|++.-++ .+|.||||-+.++.-
T Consensus 4 ~DVvLIGgGImsaTL~~~L~~l~p~--~~I~i~Erl~~~A~E 43 (488)
T PF06039_consen 4 YDVVLIGGGIMSATLGYLLKELEPD--WSIAIFERLDSVALE 43 (488)
T ss_pred eeEEEECchHHHHHHHHHHHHhCCC--CeEEEEEecCcchhh
Confidence 5999999999999999999999987 999999999888754
No 133
>PLN02661 Putative thiazole synthesis
Probab=98.82 E-value=4.6e-08 Score=88.87 Aligned_cols=132 Identities=19% Similarity=0.250 Sum_probs=77.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.||+|||||++|+++|+.|++++ |++|+|+|++..+||.... |.+.+... .......++++++
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~---g~kV~viEk~~~~GGG~~~-------------gg~l~~~~-vv~~~a~e~LeEl 155 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNP---NVKVAIIEQSVSPGGGAWL-------------GGQLFSAM-VVRKPAHLFLDEL 155 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcC---CCeEEEEecCcccccceee-------------Cccccccc-ccccHHHHHHHHc
Confidence 49999999999999999999862 3999999999888874221 11111110 0000011233333
Q ss_pred hhcCcccccccccccccccCCCcceEEcCC---ChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcE-EEEe------
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQ---GSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQI-EVTS------ 151 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~-~v~~------ 151 (365)
|+ ++.. . ...+.... -+..+.+...++.+ +++..++.|.++-.++ +.+ .+..
T Consensus 156 ---GV--~fd~---------~-dgy~vv~ha~e~~stLi~ka~~~~g-VkI~~~t~V~DLI~~~--grVaGVVvnw~~v~ 217 (357)
T PLN02661 156 ---GV--PYDE---------Q-ENYVVIKHAALFTSTIMSKLLARPN-VKLFNAVAAEDLIVKG--DRVGGVVTNWALVA 217 (357)
T ss_pred ---CC--Cccc---------C-CCeeEecchHHHHHHHHHHHHhcCC-CEEEeCeEeeeEEecC--CEEEEEEeecchhh
Confidence 22 1211 0 01111111 12455555555456 8999999999997765 442 2221
Q ss_pred cC--C------CeeecCEEEEcCCh
Q psy12489 152 KE--G------KKGIFDIVVLSMPA 168 (365)
Q Consensus 152 ~~--g------~~~~~d~vV~a~p~ 168 (365)
.+ + ..+.++.||+|++.
T Consensus 218 ~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 218 QNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred hccCCCCccceeEEECCEEEEcCCC
Confidence 11 1 25789999999983
No 134
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.82 E-value=3.6e-09 Score=87.80 Aligned_cols=39 Identities=26% Similarity=0.545 Sum_probs=36.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
.||+|||||+|||+|||+|+++| .+|+|||++-.+||.+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g----~kV~i~E~~ls~GGG~ 69 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAG----LKVAIFERKLSFGGGI 69 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCC----ceEEEEEeecccCCcc
Confidence 49999999999999999999998 9999999999998763
No 135
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.81 E-value=2.4e-08 Score=96.53 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=34.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC--CCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG--PGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~--~ggr 43 (365)
.||+|||||++||++|+.|+++| .+|+|+||... .||.
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G----~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAG----ASVLLLEAAPREWRGGN 44 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CeEEEEeCCCCcCCCcc
Confidence 49999999999999999999998 99999999874 4553
No 136
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.77 E-value=6.8e-08 Score=89.78 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=88.7
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecC-hhcchhHHHhhh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTT-PDFLSNHTDIYQ 79 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~-~~~~~~~~~~~~ 79 (365)
|++|+|||||++|+++|.+|.+.-... ..|.|||+....|+.+...... +...++..+...+.. |+..+ + |.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~-~~Isi~e~~~~~G~GiaYs~~~--p~~~lNv~a~~mS~~~pD~p~---~-F~ 73 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPS-GLISIFEPRPNFGQGIAYSTEE--PEHLLNVPAARMSAFAPDIPQ---D-FV 73 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCC-CceEEeccccccCCCccCCCCC--chhhhccccccccccCCCCch---H-HH
Confidence 789999999999999999998774431 2399999999999776554432 234555555544443 33111 1 12
Q ss_pred hhhhcCcccccccccccccccCCCcceEEcCC----ChHHHHHHHHhhCCCc-eEEEeeeeEEeeecCCCCcEEEEecCC
Q psy12489 80 PLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQ----GSSSIVKYFLNKSNID-EICYNTFLETMAKTDSTNQIEVTSKEG 154 (365)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~l~~~l~~~~g~~-~i~~~~~V~~i~~~~~~~~~~v~~~~g 154 (365)
+|..... +.-...... ......|.++. -+...+..+.++..+. -.+..++++++...+...++.+.+.+|
T Consensus 74 ~WL~~~~-~~~~d~~~~----~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g 148 (474)
T COG4529 74 RWLQKQL-QRYRDPEDI----NHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG 148 (474)
T ss_pred HHHHhcc-cccCChhhc----CCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC
Confidence 2221110 000000000 01122233322 2344455565543212 345666777776662115678888899
Q ss_pred CeeecCEEEEcCC
Q psy12489 155 KKGIFDIVVLSMP 167 (365)
Q Consensus 155 ~~~~~d~vV~a~p 167 (365)
....||.+|+++.
T Consensus 149 ~~~~ad~~Vlatg 161 (474)
T COG4529 149 PSEIADIIVLATG 161 (474)
T ss_pred CeeeeeEEEEecc
Confidence 8889999999974
No 137
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.76 E-value=2.4e-06 Score=81.68 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=35.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||+.|+.+|+.++-+| ++|+++|+++-..|.
T Consensus 13 ~DviVIGGGitG~GiArDaA~RG----l~v~LvE~~D~AsGT 50 (532)
T COG0578 13 FDVIVIGGGITGAGIARDAAGRG----LKVALVEKGDLASGT 50 (532)
T ss_pred CCEEEECCchhhHHHHHHHHhCC----CeEEEEecCcccCcc
Confidence 59999999999999999999998 999999999866664
No 138
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.75 E-value=1e-08 Score=85.60 Aligned_cols=132 Identities=17% Similarity=0.252 Sum_probs=69.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.||+|||||+|||+||+.|+++| ++|+|||++..+||.+.... +.|+. --.++....+++++
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g----~kV~v~E~~~~~GGg~~~Gg-------------~lf~~-iVVq~~a~~iL~el 79 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAG----LKVAVIERKLSPGGGMWGGG-------------MLFNK-IVVQEEADEILDEL 79 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHT----S-EEEEESSSS-BTTTTS-C-------------TT----EEEETTTHHHHHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCC----CeEEEEecCCCCCccccccc-------------cccch-hhhhhhHHHHHHhC
Confidence 49999999999999999999998 99999999999998643321 11111 00011112344444
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCC---hHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcE---EEEe----
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQG---SSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQI---EVTS---- 151 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~---~v~~---- 151 (365)
. + +... .....|. ... ...|+.+..+ .| .+|.-.+.|+.+-..++ +++ .+.-
T Consensus 80 g---i--~y~~---------~~~g~~v-~d~~~~~s~L~s~a~~-aG-akifn~~~vEDvi~r~~-~rV~GvViNWt~V~ 141 (230)
T PF01946_consen 80 G---I--PYEE---------YGDGYYV-ADSVEFTSTLASKAID-AG-AKIFNLTSVEDVIVRED-DRVAGVVINWTPVE 141 (230)
T ss_dssp T--------EE----------SSEEEE-S-HHHHHHHHHHHHHT-TT-EEEEETEEEEEEEEECS-CEEEEEEEEEHHHH
T ss_pred C---c--eeEE---------eCCeEEE-EcHHHHHHHHHHHHhc-CC-CEEEeeeeeeeeEEEcC-CeEEEEEEEehHHh
Confidence 2 1 1111 1112232 222 2334444444 47 89999999999855441 343 2211
Q ss_pred cCC-----CeeecCEEEEcCChh
Q psy12489 152 KEG-----KKGIFDIVVLSMPAP 169 (365)
Q Consensus 152 ~~g-----~~~~~d~vV~a~p~~ 169 (365)
..| -+++++.||-|++.+
T Consensus 142 ~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 142 MAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp TT--T-B-EEEEESEEEE---SS
T ss_pred HhhcCCCcceEEEeEEEeCCCCc
Confidence 122 268899999999643
No 139
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.75 E-value=7.3e-08 Score=94.92 Aligned_cols=108 Identities=12% Similarity=0.121 Sum_probs=70.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.||+|||||+|||++|..|+++| ++|+|||+. .+||.+..... +..++
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g----~~V~liE~~-~~GG~~~~~~~--------------i~~~p------------- 52 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAK----LDTLIIEKD-DFGGQITITSE--------------VVNYP------------- 52 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC----CCEEEEecC-CCCceEEeccc--------------cccCC-------------
Confidence 69999999999999999999997 999999996 57775432110 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
+. ..+ ....+...++..++.++ +++ .+++|.+++..+ +.+.+.+.++ .+.+++
T Consensus 53 ---g~-~~~------------------~~~~l~~~l~~~~~~~g-v~~-~~~~V~~i~~~~--~~~~V~~~~g-~~~a~~ 105 (555)
T TIGR03143 53 ---GI-LNT------------------TGPELMQEMRQQAQDFG-VKF-LQAEVLDVDFDG--DIKTIKTARG-DYKTLA 105 (555)
T ss_pred ---CC-cCC------------------CHHHHHHHHHHHHHHcC-CEE-eccEEEEEEecC--CEEEEEecCC-EEEEeE
Confidence 00 000 00011112222334456 777 478899998766 6677777665 578999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 106 lVlATGa 112 (555)
T TIGR03143 106 VLIATGA 112 (555)
T ss_pred EEECCCC
Confidence 9999985
No 140
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.74 E-value=6.6e-08 Score=93.26 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=32.5
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|+||+|||||+|||+||..|+++| .+|+|+||..
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G----~~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKG----FDVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCC----CeEEEEeCCC
Confidence 899999999999999999999998 9999999975
No 141
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.74 E-value=1.8e-08 Score=96.90 Aligned_cols=61 Identities=25% Similarity=0.294 Sum_probs=48.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccce
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQY 63 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~ 63 (365)
++|+|||||+|||++|+.|.+.|.-.|.+|+|||+.+.+||++.+..... .++.++.|...
T Consensus 23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~-~Gy~~~~G~~~ 83 (576)
T PRK13977 23 KKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE-KGYVARGGREM 83 (576)
T ss_pred CeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc-CCEEEECCCCc
Confidence 58999999999999999999975322489999999999999987754322 35777777553
No 142
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.74 E-value=3e-08 Score=86.92 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=53.1
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTT 67 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~ 67 (365)
|.|++|||||++|+.+|..|++.| .+|+|+||++.+||.+.+...+..+-....-|++.|+.+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~g----k~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~ 63 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLG----KRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTD 63 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcC----CEEEEEeccccCCCccccccCCCCCeEEeeccCceeecC
Confidence 789999999999999999999998 999999999999999877665422234567788888874
No 143
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.74 E-value=1.7e-06 Score=86.29 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=33.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+.|+++|+.|+++| ++|+|+|+++-.+|
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rG----l~V~LvE~~d~a~G 108 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRG----LRVGLVEREDFSSG 108 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCC----CEEEEEeccccCCC
Confidence 58999999999999999999998 99999999864444
No 144
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.72 E-value=4.3e-08 Score=94.11 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=34.3
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
||+|||||++|++||+.++++|. .+|+|+||....||.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~---~~V~vlEk~~~~gg~ 38 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGA---ANVVLLEKMPVIGGN 38 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---ccEEEEecCCCCCCc
Confidence 89999999999999999999851 799999999888775
No 145
>PRK10262 thioredoxin reductase; Provisional
Probab=98.71 E-value=1.4e-07 Score=86.68 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=68.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
+||+|||||++||++|..|+++| ++++|+|+. .+||.+..... +...|
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~g----~~~~~ie~~-~~gg~~~~~~~--------------~~~~~------------- 54 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARAN----LQPVLITGM-EKGGQLTTTTE--------------VENWP------------- 54 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CCeEEEEee-cCCCceecCce--------------ECCCC-------------
Confidence 58999999999999999999998 899999964 57765332110 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
+.... ....-+...+....+.++ .+++.+ .|.+|+..+ +.|.++..++ .+.+|+
T Consensus 55 ---~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~v~~~~--~~~~v~~~~~-~~~~d~ 108 (321)
T PRK10262 55 ---GDPND------------------LTGPLLMERMHEHATKFE-TEIIFD-HINKVDLQN--RPFRLTGDSG-EYTCDA 108 (321)
T ss_pred ---CCCCC------------------CCHHHHHHHHHHHHHHCC-CEEEee-EEEEEEecC--CeEEEEecCC-EEEECE
Confidence 00000 000001122233444455 666665 577888776 7787776544 689999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 109 vilAtG~ 115 (321)
T PRK10262 109 LIIATGA 115 (321)
T ss_pred EEECCCC
Confidence 9999985
No 146
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.69 E-value=1.6e-07 Score=89.61 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=32.7
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
||+|||+|+|||+||+.|+++| .+|+|+||....||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G----~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAG----AKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTT----T-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhc----CeEEEEEeeccccc
Confidence 8999999999999999999998 99999999998887
No 147
>PRK07121 hypothetical protein; Validated
Probab=98.64 E-value=6.9e-08 Score=93.94 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=35.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+|+|||++|+.++++| .+|+|+||....||.
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae~G----~~VillEK~~~~gG~ 58 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAAAG----ARVLVLERAAGAGGA 58 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHHCC----CeEEEEeCCCCCCCc
Confidence 59999999999999999999998 999999999887874
No 148
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.63 E-value=3.3e-07 Score=88.59 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=36.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
.||+|||||++|+++|+.|+++| .+|+|+|+++.+||..
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G----~~v~liE~~~~~GG~~ 44 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLG----KRVAVIERYRNVGGGC 44 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC----CEEEEEeccccccccc
Confidence 59999999999999999999998 9999999988899863
No 149
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.62 E-value=5.3e-07 Score=64.61 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=59.9
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhhh
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPLL 82 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l~ 82 (365)
+|+|||||+.|+-+|..|++.| .+|+|+++++.+. + .. .+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g----~~vtli~~~~~~~-~----~~-----------------~~~~------------ 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG----KEVTLIERSDRLL-P----GF-----------------DPDA------------ 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----SEEEEEESSSSSS-T----TS-----------------SHHH------------
T ss_pred CEEEECcCHHHHHHHHHHHHhC----cEEEEEeccchhh-h----hc-----------------CHHH------------
Confidence 5899999999999999999998 9999999987653 0 00 0000
Q ss_pred hcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCC
Q psy12489 83 DEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEG 154 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g 154 (365)
...+.+.+.+ .| +++++++.|++++.++ +++.|+++||
T Consensus 43 ------------------------------~~~~~~~l~~-~g-V~v~~~~~v~~i~~~~--~~~~V~~~~g 80 (80)
T PF00070_consen 43 ------------------------------AKILEEYLRK-RG-VEVHTNTKVKEIEKDG--DGVEVTLEDG 80 (80)
T ss_dssp ------------------------------HHHHHHHHHH-TT-EEEEESEEEEEEEEET--TSEEEEEETS
T ss_pred ------------------------------HHHHHHHHHH-CC-CEEEeCCEEEEEEEeC--CEEEEEEecC
Confidence 0123344444 48 9999999999999988 6677888775
No 150
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.60 E-value=4.6e-07 Score=86.50 Aligned_cols=37 Identities=32% Similarity=0.414 Sum_probs=32.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+|.|||+||..++ .| .+|+|+||....||.
T Consensus 5 ~DVvVVG~G~AGl~AA~~a~-~G----~~V~lleK~~~~gg~ 41 (433)
T PRK06175 5 ADVLIVGSGVAGLYSALNLR-KD----LKILMVSKGKLNECN 41 (433)
T ss_pred ccEEEECchHHHHHHHHHhc-cC----CCEEEEecCCCCCCc
Confidence 49999999999999999985 56 999999999877663
No 151
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.59 E-value=1.1e-06 Score=86.45 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=34.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||+|+|||+||..+++.| .+|+|+||....+|
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G----~~VilleK~~~~~g 53 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAG----RRVLVVTKAALDDG 53 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcC----CeEEEEEccCCCCC
Confidence 59999999999999999999997 99999999886655
No 152
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.59 E-value=5.6e-07 Score=86.28 Aligned_cols=112 Identities=17% Similarity=0.252 Sum_probs=71.9
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhh
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQP 80 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~ 80 (365)
|++|+|||||++|+.+|..|++.+++ .+|+|+|+++.++ +. ..+..+ +.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~--~~I~li~~~~~~~-------~~-------~~~lp~------~~--------- 49 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKE--SDIIIFEKDRDMS-------FA-------NCALPY------YI--------- 49 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCC--CCEEEEECCCCcc-------cc-------cCCcch------hh---------
Confidence 88999999999999999999988654 8999999987543 10 000000 00
Q ss_pred hhhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecC-CC--ee
Q psy12489 81 LLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKE-GK--KG 157 (365)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~-g~--~~ 157 (365)
.+....+.. .+.. ..+.+.++.+ ++++++++|.+|+..+ +.+.+...+ ++ ++
T Consensus 50 ---~~~~~~~~~-------------~~~~------~~~~~~~~~~-i~v~~~~~V~~Id~~~--~~v~~~~~~~~~~~~~ 104 (438)
T PRK13512 50 ---GEVVEDRKY-------------ALAY------TPEKFYDRKQ-ITVKTYHEVIAINDER--QTVTVLNRKTNEQFEE 104 (438)
T ss_pred ---cCccCCHHH-------------cccC------CHHHHHHhCC-CEEEeCCEEEEEECCC--CEEEEEECCCCcEEee
Confidence 000000000 0000 0123334457 8999999999999877 777776543 22 36
Q ss_pred ecCEEEEcCCh
Q psy12489 158 IFDIVVLSMPA 168 (365)
Q Consensus 158 ~~d~vV~a~p~ 168 (365)
.+|+||+|++.
T Consensus 105 ~yd~lviAtGs 115 (438)
T PRK13512 105 SYDKLILSPGA 115 (438)
T ss_pred ecCEEEECCCC
Confidence 89999999974
No 153
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.57 E-value=4.1e-07 Score=88.62 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=33.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC-CCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA-RGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~-~~~gg 42 (365)
.||+|||||+||+.||+.|++.| .+|+|+|++ +.+|+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G----~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMG----AKTLLLTHNLDTIGQ 42 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcC----CcEEEEecccccccc
Confidence 59999999999999999999998 999999987 35654
No 154
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.56 E-value=8.5e-07 Score=86.16 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=32.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||+.+++.| . |+|+||....+|
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G----~-V~lleK~~~~~g 38 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQG----R-VIVLSKAPVTEG 38 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCC----C-EEEEEccCCCCC
Confidence 59999999999999999999987 7 999999976665
No 155
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.56 E-value=9.9e-08 Score=87.85 Aligned_cols=145 Identities=12% Similarity=0.170 Sum_probs=78.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeeccc--ceeec-ChhcchhHHHhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGL--QYITT-TPDFLSNHTDIY 78 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~--~~~~~-~~~~~~~~~~~~ 78 (365)
.|+++||.|+++|++|..|.+.+ ..++..||+.+.....- .-.- ++....... ...+. +|.-. ..++
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~---~~~~~f~e~~~~f~Wh~--gmll--~~~~~q~~fl~Dlvt~~~P~s~---~sfl 72 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHG---DLKALFLERRPSFSWHP--GMLL--PGARMQVSFLKDLVTLRDPTSP---FSFL 72 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH------EEEEES-SS--TTG--GG----SS-B-SS-TTSSSSTTT-TTST---TSHH
T ss_pred eeEEEEeeCHHHHHHHHHhhhcC---CCCEEEEecCCCCCcCC--ccCC--CCCccccccccccCcCcCCCCc---ccHH
Confidence 59999999999999999999997 48999999987553210 0000 000111100 00011 11100 0234
Q ss_pred hhhhhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCC--cEEEEec----
Q psy12489 79 QPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTN--QIEVTSK---- 152 (365)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~--~~~v~~~---- 152 (365)
+-|...|.+..|... ...+..+..+..+++-.+++++ ..++++++|++|+...+.+ .|.|++.
T Consensus 73 nYL~~~~rl~~f~~~----------~~~~p~R~ef~dYl~Wva~~~~-~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g 141 (341)
T PF13434_consen 73 NYLHEHGRLYEFYNR----------GYFFPSRREFNDYLRWVAEQLD-NQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDG 141 (341)
T ss_dssp HHHHHTT-HHHHHHH------------SS-BHHHHHHHHHHHHCCGT-TTEEESEEEEEEEEEEETTEEEEEEEEEETTS
T ss_pred HHHHHcCChhhhhhc----------CCCCCCHHHHHHHHHHHHHhCC-CceEECCEEEEEEEecCCCccEEEEEEeecCC
Confidence 444445544444310 1112334456788888888887 7799999999999876211 3888873
Q ss_pred CCCeeecCEEEEcCC
Q psy12489 153 EGKKGIFDIVVLSMP 167 (365)
Q Consensus 153 ~g~~~~~d~vV~a~p 167 (365)
+++++.|++||++++
T Consensus 142 ~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 142 DGETYRARNVVLATG 156 (341)
T ss_dssp -EEEEEESEEEE---
T ss_pred CeeEEEeCeEEECcC
Confidence 345789999999986
No 156
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.56 E-value=6e-07 Score=88.94 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=33.2
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
||+|||||+|||+||+.++++| .+|+|+||....+|
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G----~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAG----LNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCC----CcEEEEeccCCCCC
Confidence 8999999999999999999998 99999999876554
No 157
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.56 E-value=4.4e-07 Score=87.19 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=34.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||++|+++|+.|+++| ++|+|+|+. .+||.
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G----~~V~lie~~-~~GG~ 39 (446)
T TIGR01424 3 YDLFVIGAGSGGVRAARLAANHG----AKVAIAEEP-RVGGT 39 (446)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC----CcEEEEecC-ccCce
Confidence 59999999999999999999998 999999995 68875
No 158
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.56 E-value=2.1e-07 Score=92.15 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=36.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
.||+|||+|++|+++|+.++++| .+|+|+||....||..
T Consensus 10 ~DVvVVG~G~aGl~AA~~aa~~G----~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 10 CDVLVIGSGAGGLSAAITARKLG----LDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCEEEECcCHHHHHHHHHHHHcC----CeEEEEecCCCCCCcc
Confidence 49999999999999999999998 9999999999888764
No 159
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=1.1e-06 Score=87.10 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=33.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||..++++|+. +.+|+|+||....||
T Consensus 6 ~DVlVVG~G~AGl~AA~~Aa~~G~~-~~~V~lleK~~~~~~ 45 (577)
T PRK06069 6 YDVVIVGSGLAGLRAAVAAAERSGG-KLSVAVVSKTQPMRS 45 (577)
T ss_pred cCEEEECccHHHHHHHHHHHHhCCC-CCcEEEEEcccCCCC
Confidence 5999999999999999999998610 069999999876665
No 160
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.53 E-value=3.2e-07 Score=87.83 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=28.3
Q ss_pred EEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 6 IVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 6 IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
|||+|++|++||+.++++| .+|+|+||...
T Consensus 1 VVG~G~AGl~AA~~Aa~~G----a~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAG----ASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCC----CcEEEEeCCCC
Confidence 7999999999999999998 99999999874
No 161
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.52 E-value=1.1e-06 Score=86.89 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=33.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||+.+++.|+ |.+|+|+||....+|
T Consensus 5 ~DVlVVG~G~AGl~AAi~Aa~~g~--g~~V~lleK~~~~~g 43 (582)
T PRK09231 5 ADLAIIGAGGAGLRAAIAAAEANP--NLKIALISKVYPMRS 43 (582)
T ss_pred eeEEEECccHHHHHHHHHHHHhCC--CCcEEEEEccCCCCC
Confidence 599999999999999999998853 279999999876665
No 162
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=1.7e-06 Score=86.40 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=33.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPG 41 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~g 41 (365)
.||+|||||+|||+||..++++| .+|+|+||...+|
T Consensus 36 ~DVlVVG~G~AGl~AAi~Aae~G----~~VilieK~~~~~ 71 (640)
T PRK07573 36 FDVIVVGTGLAGASAAATLGELG----YNVKVFCYQDSPR 71 (640)
T ss_pred cCEEEECccHHHHHHHHHHHHcC----CcEEEEecCCCCC
Confidence 49999999999999999999998 9999999976665
No 163
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.52 E-value=6.2e-07 Score=89.15 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=32.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHh--cCCCceeEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQK--LLTDLIHITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~--g~~~~~~v~v~E~~~~~ 40 (365)
.||+|||||+|||+||+.+++. | .+|+|+||....
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G----~~V~lieK~~~~ 48 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPD----LKVLIVEKANIK 48 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCC----CeEEEEECCCcC
Confidence 4999999999999999999998 7 899999998654
No 164
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=1.2e-06 Score=86.68 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=33.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||+.++++|+ |.+|+|+||....||
T Consensus 4 ~DVlVIG~G~AGl~AAi~aa~~g~--g~~V~vleK~~~~gg 42 (575)
T PRK05945 4 HDVVIVGGGLAGCRAALEIKRLDP--SLDVAVVAKTHPIRS 42 (575)
T ss_pred ccEEEECccHHHHHHHHHHHHhcC--CCcEEEEeccCCCch
Confidence 499999999999999999998853 279999999876555
No 165
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=2.5e-06 Score=84.71 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=33.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||..+++.| .+|+|+||....+|
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G----~~V~vleK~~~~~g 49 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAG----LSVAVLSKVFPTRS 49 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCC----CcEEEEeccCCCCC
Confidence 49999999999999999999997 99999999865554
No 166
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.51 E-value=3.6e-07 Score=88.48 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=34.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||++|+++|..|+++| .+|+|+|+. .+||.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G----~~v~lie~~-~~GG~ 41 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLG----LKTALVEKG-KLGGT 41 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC----CeEEEEEcc-CCCcc
Confidence 59999999999999999999998 999999996 68875
No 167
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.49 E-value=4.9e-07 Score=88.31 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=34.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+| +||++|+.++++| .+|+||||....||.
T Consensus 8 ~DVvVVG~G-aGl~aA~~aa~~G----~~V~vlEk~~~~Gg~ 44 (513)
T PRK12837 8 VDVLVAGSG-GGVAGAYTAAREG----LSVALVEATDKFGGT 44 (513)
T ss_pred cCEEEECch-HHHHHHHHHHHCC----CcEEEEecCCCCCcc
Confidence 499999999 9999999999998 999999999877774
No 168
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.49 E-value=9.1e-07 Score=85.56 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=35.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||++|+.+|..|+++| .+|+|+|+.+.+||.
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G----~~V~lie~~~~~GG~ 42 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLG----LETVCVERYSTLGGV 42 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCC----CcEEEEecCCccccc
Confidence 69999999999999999999998 999999998778875
No 169
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.49 E-value=5.7e-07 Score=86.90 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=35.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||++|+++|..|+++| .+|+|+|+...+||.
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G----~~V~liE~~~~~GG~ 41 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLG----LKVACVEGRSTLGGT 41 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC----CeEEEEecCCceeee
Confidence 48999999999999999999998 999999987778886
No 170
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.49 E-value=1e-06 Score=85.10 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=34.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
.||+|||||++|+++|..|+++| .+|+|+|+.. +||..
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G----~~V~liE~~~-~GG~c 42 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLG----LKVAIVEKEK-LGGTC 42 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCC----CcEEEEeccc-cccce
Confidence 59999999999999999999998 9999999976 88763
No 171
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.48 E-value=1e-06 Score=84.68 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=34.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC-CCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR-GPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~-~~ggr 43 (365)
.||+|||||++|+++|+.|+++| .+|+|+|+++ .+||.
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g----~~V~lie~~~~~~GG~ 42 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAG----WRVALIEQSNAMYGGT 42 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCC----CeEEEEcCCCCcccee
Confidence 49999999999999999999998 9999999975 36765
No 172
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.48 E-value=3.1e-07 Score=84.85 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=71.8
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEE-ecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIW-DKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~-E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
||+|||||.||+.||+.+++.| .+|+++ +..+.+|...-. -.+|.. . .. .+.+++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G----~~V~Lit~~~d~i~~~~Cn----------psigg~---~----kg---~L~~Ei 56 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG----AKVLLITHNTDTIGEMSCN----------PSIGGI---A----KG---HLVREI 56 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT------EEEEES-GGGTT--SSS----------SEEEST---T----HH---HHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC----CCEEEEeecccccccccch----------hhhccc---c----cc---chhHHH
Confidence 8999999999999999999998 999999 444444322111 111111 0 00 112222
Q ss_pred hhc-Ccccccccc----cccc-ccc-CC-Ccce-EEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCc-EEEEe
Q psy12489 82 LDE-KLLEPFTAN----IIGY-KSR-KK-NVTH-YVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQ-IEVTS 151 (365)
Q Consensus 82 ~~~-~~~~~~~~~----~~~~-~~~-~~-~~~~-~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~-~~v~~ 151 (365)
... |.+-..... +.-+ .++ .. ...+ ...+..+...++..+++.++++| ....|++|..++ +. +.|.+
T Consensus 57 dalgg~m~~~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~--~~v~GV~~ 133 (392)
T PF01134_consen 57 DALGGLMGRAADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTI-IQGEVTDLIVEN--GKVKGVVT 133 (392)
T ss_dssp HHTT-SHHHHHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEE-EES-EEEEEECT--TEEEEEEE
T ss_pred hhhhhHHHHHHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEE-EEcccceEEecC--CeEEEEEe
Confidence 111 111111100 0000 000 00 0111 12223344555555554443677 478999998776 55 56889
Q ss_pred cCCCeeecCEEEEcCCh
Q psy12489 152 KEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 152 ~~g~~~~~d~vV~a~p~ 168 (365)
.+|..+.+|.||+|++.
T Consensus 134 ~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 134 KDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTSEEEEECEEEE-TTT
T ss_pred CCCCEEecCEEEEeccc
Confidence 99999999999999985
No 173
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.48 E-value=5.5e-07 Score=87.01 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=35.1
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
|+||+|||||++|+.+|..|+++| .+|+|+|++. +||.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g----~~v~~~e~~~-~gG~ 38 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLG----ADVTVIERDG-LGGA 38 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC----CeEEEEEccC-CCCc
Confidence 899999999999999999999998 9999999874 7765
No 174
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.47 E-value=1e-06 Score=84.66 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=69.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||++|+++|..|++.++. .+|+|+|+++..+- . . .+..++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~--~~Vtli~~~~~~~~---~--~---------~~~~~~~~--------------- 49 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKE--LEITVYEKTDIVSF---G--A---------CGLPYFVG--------------- 49 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCC--CcEEEEECCCccee---e--c---------CCCceEec---------------
Confidence 3799999999999999999998754 79999999876530 0 0 00000000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEec-CCCeee--
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSK-EGKKGI-- 158 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~-~g~~~~-- 158 (365)
+.. .. .. .+. ....+.+. +.+ +++++++.|.+|+.++ +.+.+... ++.++.
T Consensus 50 ---~~~---~~----------~~-~~~-----~~~~~~~~-~~g-v~~~~~~~V~~id~~~--~~v~~~~~~~~~~~~~~ 103 (444)
T PRK09564 50 ---GFF---DD----------PN-TMI-----ARTPEEFI-KSG-IDVKTEHEVVKVDAKN--KTITVKNLKTGSIFNDT 103 (444)
T ss_pred ---ccc---CC----------HH-Hhh-----cCCHHHHH-HCC-CeEEecCEEEEEECCC--CEEEEEECCCCCEEEec
Confidence 000 00 00 000 00112222 347 8999999999998877 76776642 355566
Q ss_pred cCEEEEcCCh
Q psy12489 159 FDIVVLSMPA 168 (365)
Q Consensus 159 ~d~vV~a~p~ 168 (365)
+|+||+|++.
T Consensus 104 yd~lviAtG~ 113 (444)
T PRK09564 104 YDKLMIATGA 113 (444)
T ss_pred CCEEEECCCC
Confidence 9999999985
No 175
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.47 E-value=7.8e-07 Score=88.13 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=36.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
.||+|||+|++|+++|+.++++| .+|+|||+...+||..
T Consensus 13 ~dvvvvG~G~aG~~aa~~~~~~g----~~v~~iek~~~~gg~~ 51 (581)
T PRK06134 13 CDVLVIGSGAAGLSAAVTAAWHG----LKVIVVEKDPVFGGTT 51 (581)
T ss_pred cCEEEECcCHHHHHHHHHHHHCC----CeEEEEecCCCCCccc
Confidence 59999999999999999999998 9999999998888753
No 176
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=4.7e-06 Score=83.25 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=33.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||..+++.| .+|+|+||....+|
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G----~~V~lieK~~~~~g 45 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERG----LRVAVVCKSLFGKA 45 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCC----CCEEEEeccCCCCC
Confidence 59999999999999999999998 99999999875443
No 177
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.45 E-value=4.1e-06 Score=82.83 Aligned_cols=40 Identities=8% Similarity=0.124 Sum_probs=34.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||+|||+||..++++|+ |.+|+|+||....||.
T Consensus 4 ~DVlVIG~G~AGl~AAl~aa~~g~--g~~V~lveK~~~~~~~ 43 (580)
T TIGR01176 4 HDIAVIGAGGAGLRAAIAAAEANP--HLDVALISKVYPMRSH 43 (580)
T ss_pred eeEEEECccHHHHHHHHHHHHhCC--CCcEEEEEccCCCCCC
Confidence 599999999999999999998753 2799999999776653
No 178
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=3.5e-06 Score=83.01 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
.||+|||||.|||+||+.+ +.| .+|+|+||...
T Consensus 8 ~DVlVVG~G~AGl~AAi~A-~~G----~~VilleK~~~ 40 (543)
T PRK06263 8 TDVLIIGSGGAGARAAIEA-ERG----KNVVIVSKGLF 40 (543)
T ss_pred cCEEEECccHHHHHHHHHH-hcC----CCEEEEEccCC
Confidence 5999999999999999999 887 99999999753
No 179
>KOG2415|consensus
Probab=98.43 E-value=2.6e-06 Score=77.42 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=38.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCC--CceeEEEEecCCCCCccceeec
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLT--DLIHITIWDKARGPGGRMTTSR 48 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~--~~~~v~v~E~~~~~ggr~~t~~ 48 (365)
.||+|||||+|||++|.+|+|...+ .-++|+|+|+...+||.+-+..
T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa 125 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA 125 (621)
T ss_pred ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence 4899999999999999999875432 1378999999999998755543
No 180
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.43 E-value=4.1e-06 Score=82.78 Aligned_cols=37 Identities=8% Similarity=0.234 Sum_probs=33.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||..+++.| .+|+|+||....+|
T Consensus 6 ~DVvVVG~G~AGl~AAl~Aae~G----~~V~lveK~~~~~g 42 (566)
T PRK06452 6 YDAVVIGGGLAGLMSAHEIASAG----FKVAVISKVFPTRS 42 (566)
T ss_pred CcEEEECccHHHHHHHHHHHHCC----CcEEEEEccCCCCC
Confidence 59999999999999999999997 99999999875554
No 181
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.42 E-value=3.8e-05 Score=72.31 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=42.2
Q ss_pred HHHHHHHHhhC--CCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChh
Q psy12489 114 SSIVKYFLNKS--NIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 114 ~~l~~~l~~~~--g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
..++..|.+.+ | ++++++++|.+|+.++ ++|.+.+.+|.+++||+||+|++..
T Consensus 135 ~~~~~~l~~~~~~G-~~i~~~~~V~~i~~~~--~~~~v~t~~g~~~~a~~vV~a~G~~ 189 (381)
T TIGR03197 135 PQLCRALLAHAGIR-LTLHFNTEITSLERDG--EGWQLLDANGEVIAASVVVLANGAQ 189 (381)
T ss_pred HHHHHHHHhccCCC-cEEEeCCEEEEEEEcC--CeEEEEeCCCCEEEcCEEEEcCCcc
Confidence 34555554421 6 8999999999999877 7799998888778999999999854
No 182
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.41 E-value=3.5e-06 Score=83.76 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=33.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||+.+++.| .+|+|+||....+|
T Consensus 13 ~DVvVIG~G~AGl~AAl~Aa~~G----~~V~lveK~~~~~g 49 (598)
T PRK09078 13 YDVVVVGAGGAGLRATLGMAEAG----LKTACITKVFPTRS 49 (598)
T ss_pred cCEEEECccHHHHHHHHHHHHcC----CcEEEEEccCCCCc
Confidence 49999999999999999999997 89999999865554
No 183
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.41 E-value=4.6e-06 Score=81.35 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=32.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+|+|||+||..+++ | .+|+|+||....||.
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g----~~V~lveK~~~~~g~ 40 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-E----YNVIIITKKTKRNSN 40 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-C----CCEEEEeccCCCCCC
Confidence 599999999999999999976 6 899999999876653
No 184
>PRK08275 putative oxidoreductase; Provisional
Probab=98.39 E-value=1.6e-06 Score=85.54 Aligned_cols=37 Identities=14% Similarity=0.373 Sum_probs=32.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
.||+|||||+|||+||+.++++|+ |.+|+|+||....
T Consensus 10 ~DVlVIG~G~AGl~AAi~aa~~g~--g~~VilveK~~~~ 46 (554)
T PRK08275 10 TDILVIGGGTAGPMAAIKAKERNP--ALRVLLLEKANVK 46 (554)
T ss_pred cCEEEECcCHHHHHHHHHHHHhCC--CCeEEEEeCCCCC
Confidence 499999999999999999998742 2899999998754
No 185
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.39 E-value=1.3e-06 Score=84.75 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=29.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEec
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDK 36 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~ 36 (365)
.||+|||||++|+++|..|+++| .+|+|+|+
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g----~~v~lie~ 35 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLG----LKVACIEA 35 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCC----CeEEEEec
Confidence 49999999999999999999998 99999998
No 186
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.38 E-value=2.6e-06 Score=84.79 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=33.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||+.+++.| .+|+|+||....+|
T Consensus 30 ~DVlVIG~G~AGl~AAi~Aa~~G----~~V~lveK~~~~~g 66 (617)
T PTZ00139 30 YDAVVVGAGGAGLRAALGLVELG----YKTACISKLFPTRS 66 (617)
T ss_pred cCEEEECccHHHHHHHHHHHHcC----CcEEEEeccCCCCC
Confidence 49999999999999999999997 99999999876554
No 187
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.37 E-value=5.2e-06 Score=82.50 Aligned_cols=34 Identities=21% Similarity=0.498 Sum_probs=31.3
Q ss_pred EEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCC
Q psy12489 4 VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPG 41 (365)
Q Consensus 4 v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~g 41 (365)
|+|||+|+|||+||..++++| .+|+|+||...++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G----~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELG----YHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcC----CCEEEEEecCCCC
Confidence 799999999999999999998 9999999987554
No 188
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=5.7e-06 Score=82.00 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=33.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||..+++.| .+|+|+||....+|
T Consensus 8 ~DVlVVG~G~AGl~AAi~Aa~~G----~~V~lleK~~~~~g 44 (588)
T PRK08958 8 FDAVVIGAGGAGMRAALQISQSG----QSCALLSKVFPTRS 44 (588)
T ss_pred cCEEEECccHHHHHHHHHHHHcC----CcEEEEEccCCCCC
Confidence 49999999999999999999997 99999999876655
No 189
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.37 E-value=3.7e-06 Score=82.67 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=32.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+|+|||+||+.+++ | .+|+|+||....||.
T Consensus 10 ~DVlVVG~G~AGl~AAi~A~~-G----~~V~lieK~~~~gg~ 46 (553)
T PRK07395 10 FDVLVVGSGAAGLYAALCLPS-H----LRVGLITKDTLKTSA 46 (553)
T ss_pred CCEEEECccHHHHHHHHHhhc-C----CCEEEEEccCCCCCc
Confidence 599999999999999999964 6 899999999876663
No 190
>PLN02507 glutathione reductase
Probab=98.37 E-value=1.4e-06 Score=84.82 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=29.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEec
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDK 36 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~ 36 (365)
.||+|||||++|+.+|..|++.| .+|+|+|+
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G----~~V~liE~ 56 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFG----AKVGICEL 56 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCC----CeEEEEec
Confidence 48999999999999999999998 99999996
No 191
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.36 E-value=8.2e-06 Score=81.40 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=33.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||..++++| .+|+|+||....+|
T Consensus 51 ~DVlVIG~G~AGl~AAl~Aae~G----~~VilveK~~~~~g 87 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGLSEHG----FNTACITKLFPTRS 87 (635)
T ss_pred cCEEEECccHHHHHHHHHHHhcC----CcEEEEEcCCCCCC
Confidence 49999999999999999999997 99999999876554
No 192
>PRK12839 hypothetical protein; Provisional
Probab=98.36 E-value=1.5e-06 Score=85.74 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=36.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccce
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT 45 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~ 45 (365)
.||+|||+|++|+++|+.|+++| .+|+|+|+...+||...
T Consensus 9 ~dv~ViG~G~aG~~aa~~~~~~g----~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 9 YDVVVVGSGAGGLSAAVAAAYGG----AKVLVVEKASTCGGATA 48 (572)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC----CcEEEEecCCCCCcccc
Confidence 48999999999999999999998 99999999988888643
No 193
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.36 E-value=1.9e-06 Score=81.60 Aligned_cols=107 Identities=20% Similarity=0.319 Sum_probs=68.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||+||+++|..|+++|++ .+|+|+++..... + +. +... +.+
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~--~~I~li~~e~~~~-------y--------~r--------~~l~-------~~~ 51 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFT--GELHLFSDERHLP-------Y--------ER--------PPLS-------KSM 51 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCC--CCEEEeCCCCCCC-------C--------CC--------CCCC-------HHH
Confidence 4799999999999999999999854 6899999875432 0 00 0000 000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
....... ..+.. . .+.+. ..+ ++++.++.|.+++..+ . .+.+.+|+++.+|+
T Consensus 52 ~~~~~~~----------------~~~~~-~-----~~~~~-~~~-i~~~~g~~V~~id~~~--~--~v~~~~g~~~~yd~ 103 (396)
T PRK09754 52 LLEDSPQ----------------LQQVL-P-----ANWWQ-ENN-VHLHSGVTIKTLGRDT--R--ELVLTNGESWHWDQ 103 (396)
T ss_pred HCCCCcc----------------ccccC-C-----HHHHH-HCC-CEEEcCCEEEEEECCC--C--EEEECCCCEEEcCE
Confidence 0000000 00000 0 11122 336 9999999999998765 3 45556788899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 104 LViATGs 110 (396)
T PRK09754 104 LFIATGA 110 (396)
T ss_pred EEEccCC
Confidence 9999985
No 194
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.36 E-value=8.3e-06 Score=81.75 Aligned_cols=37 Identities=11% Similarity=0.230 Sum_probs=33.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||..++++| .+|+|+||....+|
T Consensus 6 ~DVlVIG~G~AGl~AAi~Aae~G----~~VivleK~~~~~s 42 (657)
T PRK08626 6 TDALVIGAGLAGLRVAIAAAQRG----LDTIVLSLVPAKRS 42 (657)
T ss_pred ccEEEECccHHHHHHHHHHHHcC----CCEEEEeCCCCCCc
Confidence 49999999999999999999998 99999999865543
No 195
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.35 E-value=7e-06 Score=87.49 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=35.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+|.||++||..+++.| .+|+|+||....||.
T Consensus 410 ~DVvVVG~G~AGl~AAi~Aae~G----a~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 410 ARVIVVGGGLAGCSAAIEAASCG----AQVILLEKEAKLGGN 447 (1167)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CcEEEEEccCCCCCc
Confidence 59999999999999999999998 999999999888875
No 196
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.33 E-value=3.9e-06 Score=81.90 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=29.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
.||+|||+|+|||+||..++ + .+|+|+||...
T Consensus 10 ~DVlVIG~G~AGl~AAl~Aa--~----~~V~lleK~~~ 41 (513)
T PRK07512 10 GRPVIVGGGLAGLMAALKLA--P----RPVVVLSPAPL 41 (513)
T ss_pred CCEEEECchHHHHHHHHHhC--c----CCEEEEECCCC
Confidence 59999999999999999996 4 69999999875
No 197
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.30 E-value=4e-06 Score=78.85 Aligned_cols=107 Identities=21% Similarity=0.303 Sum_probs=68.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||+||+++|..|++.+++ .+|+|+++++..- +. .+... .. +
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~--~~Itvi~~~~~~~-------y~----------------~~~l~----~~---~ 50 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAH--IPITLITADSGDE-------YN----------------KPDLS----HV---F 50 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcC--CCEEEEeCCCCCC-------cC----------------cCcCc----HH---H
Confidence 6999999999999999999998765 8999999976321 00 00000 00 0
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
..+. .. . ... ....+.+.++.+ ++++++++|++|+... . .+++ ++.++.+|+
T Consensus 51 -~~~~-~~-~--------------~~~-----~~~~~~~~~~~g-v~~~~~~~V~~id~~~--~--~v~~-~~~~~~yd~ 102 (377)
T PRK04965 51 -SQGQ-RA-D--------------DLT-----RQSAGEFAEQFN-LRLFPHTWVTDIDAEA--Q--VVKS-QGNQWQYDK 102 (377)
T ss_pred -hCCC-CH-H--------------Hhh-----cCCHHHHHHhCC-CEEECCCEEEEEECCC--C--EEEE-CCeEEeCCE
Confidence 0000 00 0 000 001223444557 9999999999998765 4 3444 466789999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 103 LVlATG~ 109 (377)
T PRK04965 103 LVLATGA 109 (377)
T ss_pred EEECCCC
Confidence 9999985
No 198
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.29 E-value=1.2e-05 Score=77.31 Aligned_cols=57 Identities=9% Similarity=0.071 Sum_probs=40.9
Q ss_pred cCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCc--EEEEecCCCeeecCEEEEcCChh
Q psy12489 109 TPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQ--IEVTSKEGKKGIFDIVVLSMPAP 169 (365)
Q Consensus 109 ~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~--~~v~~~~g~~~~~d~vV~a~p~~ 169 (365)
.+..+..++...+.+.| ++++.++ |+.+..++ ++ ..|.+.+|++++||.+|-|++..
T Consensus 152 DR~~fd~~L~~~A~~~G-v~~~~g~-V~~v~~~~--~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 152 DRAKFDQFLRRHAEERG-VEVIEGT-VVDVELDE--DGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp EHHHHHHHHHHHHHHTT--EEEET--EEEEEE-T--TSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred eHHHHHHHHHHHHhcCC-CEEEeCE-EEEEEEcC--CCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 34456677777777778 9998774 88887776 44 36888899999999999999853
No 199
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.29 E-value=7.3e-07 Score=92.37 Aligned_cols=41 Identities=24% Similarity=0.473 Sum_probs=37.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcccee
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t 46 (365)
++|+|||||+|||+||+.|+++| ++|+|||+.+.+||.+..
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G----~~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEG----FPVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC----CeEEEEeeCCCCCceEEc
Confidence 58999999999999999999998 999999999999997543
No 200
>PTZ00058 glutathione reductase; Provisional
Probab=98.28 E-value=3.5e-06 Score=82.69 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=34.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||++|.++|..+++.| .+|+|+|+. .+||.
T Consensus 49 yDvvVIG~G~aG~~aA~~aa~~G----~~ValIEk~-~~GGt 85 (561)
T PTZ00058 49 YDLIVIGGGSGGMAAARRAARNK----AKVALVEKD-YLGGT 85 (561)
T ss_pred ccEEEECcCHHHHHHHHHHHHcC----CeEEEEecc-ccccc
Confidence 49999999999999999999998 999999996 68876
No 201
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.27 E-value=8.9e-06 Score=76.49 Aligned_cols=95 Identities=21% Similarity=0.256 Sum_probs=72.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+++|+.+.+..+ . + .+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g----~~Vtlv~~~~~~l~~-----~--------------~--~~------------- 183 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAG----KAVTLVDNAASLLAS-----L--------------M--PP------------- 183 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC----CeEEEEecCCcccch-----h--------------C--CH-------------
Confidence 47999999999999999999997 899999987654210 0 0 00
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCCh-HHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecC
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGS-SSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFD 160 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d 160 (365)
.+ ..+.+.+ ++.| ++++++++|.+++.++ +.+.+.+.+|+++.||
T Consensus 184 ------------------------------~~~~~l~~~l-~~~g-V~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D 229 (377)
T PRK04965 184 ------------------------------EVSSRLQHRL-TEMG-VHLLLKSQLQGLEKTD--SGIRATLDSGRSIEVD 229 (377)
T ss_pred ------------------------------HHHHHHHHHH-HhCC-CEEEECCeEEEEEccC--CEEEEEEcCCcEEECC
Confidence 00 1222333 3457 9999999999998776 6778888889899999
Q ss_pred EEEEcCCh
Q psy12489 161 IVVLSMPA 168 (365)
Q Consensus 161 ~vV~a~p~ 168 (365)
.||+|++.
T Consensus 230 ~vI~a~G~ 237 (377)
T PRK04965 230 AVIAAAGL 237 (377)
T ss_pred EEEECcCC
Confidence 99999874
No 202
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.26 E-value=1e-06 Score=81.44 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=39.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceee
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTS 47 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~ 47 (365)
++++|||||+||+++|..|++.| ++|.++|+.+.+|||+...
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G----~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMG----FKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcC----CeEEEEecCCcccccHHhh
Confidence 47999999999999999999998 9999999999999996654
No 203
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.25 E-value=1e-06 Score=90.82 Aligned_cols=40 Identities=28% Similarity=0.557 Sum_probs=37.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccce
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT 45 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~ 45 (365)
++|+|||||+||++||+.|+++| ++|+|||+.+.+||...
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G----~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAG----HPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC----CeEEEEecccccCceee
Confidence 48999999999999999999998 99999999999998754
No 204
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.25 E-value=1.1e-05 Score=76.44 Aligned_cols=95 Identities=20% Similarity=0.293 Sum_probs=70.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||++|+-+|..|++.| .+|+|+|+.+++.++. . .+..
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g----~~Vtlv~~~~~~l~~~----~-----------------~~~~----------- 188 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRR----CKVTVIELAATVMGRN----A-----------------PPPV----------- 188 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CeEEEEecCCcchhhh----c-----------------CHHH-----------
Confidence 47999999999999999999997 8999999987553210 0 0000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
...+.+.+. +.| ++++++++|++++. + +.+.+.+.+|+++.||.
T Consensus 189 -------------------------------~~~l~~~l~-~~G-V~i~~~~~V~~i~~-~--~~~~v~l~~g~~i~aD~ 232 (396)
T PRK09754 189 -------------------------------QRYLLQRHQ-QAG-VRILLNNAIEHVVD-G--EKVELTLQSGETLQADV 232 (396)
T ss_pred -------------------------------HHHHHHHHH-HCC-CEEEeCCeeEEEEc-C--CEEEEEECCCCEEECCE
Confidence 012233333 447 99999999999976 4 55777788888899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||++++.
T Consensus 233 Vv~a~G~ 239 (396)
T PRK09754 233 VIYGIGI 239 (396)
T ss_pred EEECCCC
Confidence 9999874
No 205
>PLN02815 L-aspartate oxidase
Probab=98.22 E-value=1.5e-05 Score=78.89 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=32.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||+|+|||+||+.+++.| +|+|+||....||
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-----~VvlleK~~~~gg 65 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-----TVAIITKDEPHES 65 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-----CEEEEECCCCCCC
Confidence 59999999999999999999984 7999999987776
No 206
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.21 E-value=2.4e-05 Score=77.70 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=31.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||+|||+||+.+++. .+|+|+||....+|
T Consensus 6 ~DVlVIG~G~AGl~AAl~aa~~-----~~VilleK~~~~~g 41 (583)
T PRK08205 6 YDVVIVGAGGAGMRAAIEAGPR-----ARTAVLTKLYPTRS 41 (583)
T ss_pred ccEEEECccHHHHHHHHHHHhC-----CCEEEEeCCCCCCC
Confidence 4999999999999999999874 79999999865443
No 207
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.21 E-value=4.9e-06 Score=82.45 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=36.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccce
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT 45 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~ 45 (365)
.||+|||+|.+|+++|+.++++| .+|+|+|+...+||...
T Consensus 17 ~dvvvvG~G~aG~~aa~~~~~~g----~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 17 FDVIVIGAGAAGMSAALFAAIAG----LKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC----CcEEEEecCCCCCCccc
Confidence 58999999999999999999998 99999999988888643
No 208
>KOG2404|consensus
Probab=98.19 E-value=6.5e-06 Score=72.47 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=35.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
..|+|||+|+|||+++..+-..| |+ |+++|+...+||..
T Consensus 10 spvvVIGgGLAGLsasn~iin~g---g~-V~llek~~s~GGNS 48 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKG---GI-VILLEKAGSIGGNS 48 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcC---Ce-EEEEeccCCcCCcc
Confidence 46999999999999999999998 34 99999999999863
No 209
>PRK12831 putative oxidoreductase; Provisional
Probab=98.18 E-value=1.9e-06 Score=83.07 Aligned_cols=39 Identities=31% Similarity=0.456 Sum_probs=36.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
+||+|||||++||++|+.|++.| ++|+|||+.+.+||.+
T Consensus 141 ~~V~IIG~GpAGl~aA~~l~~~G----~~V~v~e~~~~~GG~l 179 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKMG----YDVTIFEALHEPGGVL 179 (464)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC----CeEEEEecCCCCCCee
Confidence 58999999999999999999998 9999999998888764
No 210
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.17 E-value=2e-06 Score=83.08 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
+.||+|||||++|+++|+.|+++| .+|+|+|+ +.+||..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G----~~v~lie~-~~~GG~~ 39 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLG----LKVALVEK-EYLGGTC 39 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCC----CeEEEEec-CCCCCce
Confidence 479999999999999999999998 99999999 7899864
No 211
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.16 E-value=2.1e-06 Score=80.15 Aligned_cols=36 Identities=17% Similarity=0.419 Sum_probs=33.1
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
|+||+|||||++|+.+|+.|+++| ++|+|+|+....
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~G----l~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRG----VPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC----CcEEEEEccCcc
Confidence 579999999999999999999998 999999987654
No 212
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.16 E-value=2.2e-06 Score=88.08 Aligned_cols=40 Identities=25% Similarity=0.543 Sum_probs=37.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccce
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT 45 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~ 45 (365)
++|+|||||+||+++|+.|+++| ++|+|||+.+.+||.+.
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G----~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAG----HPVTVFEREENAGGVVK 579 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC----CeEEEEecccccCccee
Confidence 58999999999999999999998 99999999999998753
No 213
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.15 E-value=3.6e-05 Score=75.14 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=32.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||++|+.+|..|++.| .+|+|+|++...+|
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G----~~v~Lie~~~~~~g 37 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMG----AKTLLLTLNLDTIG 37 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCC----CCEEEEeccccccc
Confidence 48999999999999999999998 99999999744333
No 214
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.14 E-value=2.7e-06 Score=81.71 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=37.0
Q ss_pred CcEEEEccCHHHHHHHHHHHH--hcCCCceeEEEEecCCCCCcccee
Q psy12489 2 KKVLIVGSGITSALTSYLLRQ--KLLTDLIHITIWDKARGPGGRMTT 46 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~--~g~~~~~~v~v~E~~~~~ggr~~t 46 (365)
++|+|||||+||++||+.|++ .| ++|+|||+.+.+||.+..
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~g----~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHDG----ARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCCC----CeEEEEecCCCCcceEee
Confidence 479999999999999999997 55 999999999999997664
No 215
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.11 E-value=0.0014 Score=60.40 Aligned_cols=181 Identities=17% Similarity=0.177 Sum_probs=94.0
Q ss_pred hCCCceEEEeeeeEEeeecCCCCcE-EEEecCCCeeecCEEEEcCChhhHHHhhccccccccchHHHHHHhhcCCcccee
Q psy12489 123 KSNIDEICYNTFLETMAKTDSTNQI-EVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRY 201 (365)
Q Consensus 123 ~~g~~~i~~~~~V~~i~~~~~~~~~-~v~~~~g~~~~~d~vV~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~ 201 (365)
+.| ++++.+++|++++..+ +.| .|.+.+| ++.||.||+|++.. +..+++ ++..++.
T Consensus 149 ~~g-~~~~~~~~v~~i~~~~--~~~~~v~~~~g-~~~a~~vV~a~G~~-~~~l~~------------------~~~~~~~ 205 (337)
T TIGR02352 149 KLG-VEIIEHTEVQHIEIRG--EKVTAIVTPSG-DVQADQVVLAAGAW-AGELLP------------------LPLRPVR 205 (337)
T ss_pred HcC-CEEEccceEEEEEeeC--CEEEEEEcCCC-EEECCEEEEcCChh-hhhccc------------------CCccccC
Confidence 347 8999999999999876 665 4676666 78999999999853 333322 1122222
Q ss_pred EEEEeccCCC----CCCcceEEecCCCcEEEeeecCCCCCCCCCCceEEEEeChhhhhhhcC-CCCchhhHHHHHHHHHH
Q psy12489 202 AFGMFFDKQF----ERPFDIKYFDDNEIIRYISFDNVKRNRPDEPISVCVHTTTQYYNSFLD-SETPRNVIERELLDLIR 276 (365)
Q Consensus 202 ~v~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~l~ 276 (365)
..++.++.+. ..+...... +. .. ++. |. +++ .+.+.....+.. .+ ..+++ .++.+++.+.
T Consensus 206 g~~~~~~~~~~~~~~~~~~~~~~-~~-~~-y~~-----p~--~~g-~~~iG~~~~~~~--~~~~~~~~--~~~~l~~~~~ 270 (337)
T TIGR02352 206 GQPLRLEAPAVPLLNRPLRAVVY-GR-RV-YIV-----PR--RDG-RLVVGATMEESG--FDTTPTLG--GIKELLRDAY 270 (337)
T ss_pred ceEEEeeccccccCCcccceEEE-cC-CE-EEE-----Ec--CCC-eEEEEEeccccC--ccCCCCHH--HHHHHHHHHH
Confidence 2223333221 111111111 11 11 111 10 112 233333222211 12 12334 6788999999
Q ss_pred hHCCCCCCCceEeeecCCCCCCcCCCCCccccee-ecCCCeEEEecccccCCCchhHHHHHHHHHHhhhhcc
Q psy12489 277 KMFPSWPLPAETKLQTWKYSQVVDPHRDKLGFMQ-FSAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMVG 347 (365)
Q Consensus 277 ~~~~~~~~~~~~~~~rw~~a~~~~~~~~~~~~~~-~~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~~ 347 (365)
++||.+.... ..+.|..-++..+ +....+. ....+++|+++- +. +.++--+...|+..|+.|+.+
T Consensus 271 ~~~P~l~~~~--~~~~~~g~r~~t~--D~~piig~~~~~~~~~~~~g-~~-g~G~~~~p~~g~~la~~i~~~ 336 (337)
T TIGR02352 271 TILPALKEAR--LLETWAGLRPGTP--DNLPYIGEHPEDRRLLIATG-HY-RNGILLAPATAEVIADLILGK 336 (337)
T ss_pred HhCCCcccCc--HHHheecCCCCCC--CCCCEeCccCCCCCEEEEcc-cc-cCceehhhHHHHHHHHHHhcC
Confidence 9998653321 2344544343321 1111121 122356777642 22 457888889999999998864
No 216
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.09 E-value=3.1e-05 Score=74.94 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=69.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+++|+.+++... + .++..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g----~~Vtli~~~~~~l~~-------------~---------~~~~~---------- 216 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLG----AEVTIVEALPRILPG-------------E---------DKEIS---------- 216 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CeEEEEEcCCCcCCc-------------C---------CHHHH----------
Confidence 47999999999999999999997 999999997654200 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCC---Ceee
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEG---KKGI 158 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g---~~~~ 158 (365)
..+.+.+ ++.| ++++++++|++|+.++ +.+.+.+.++ +++.
T Consensus 217 --------------------------------~~l~~~l-~~~g-V~i~~~~~V~~i~~~~--~~v~v~~~~gg~~~~i~ 260 (462)
T PRK06416 217 --------------------------------KLAERAL-KKRG-IKIKTGAKAKKVEQTD--DGVTVTLEDGGKEETLE 260 (462)
T ss_pred --------------------------------HHHHHHH-HHcC-CEEEeCCEEEEEEEeC--CEEEEEEEeCCeeEEEE
Confidence 1222233 3447 9999999999998776 6677766655 5689
Q ss_pred cCEEEEcCCh
Q psy12489 159 FDIVVLSMPA 168 (365)
Q Consensus 159 ~d~vV~a~p~ 168 (365)
+|.||+|++.
T Consensus 261 ~D~vi~a~G~ 270 (462)
T PRK06416 261 ADYVLVAVGR 270 (462)
T ss_pred eCEEEEeeCC
Confidence 9999999874
No 217
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.09 E-value=3.8e-06 Score=84.56 Aligned_cols=40 Identities=28% Similarity=0.502 Sum_probs=37.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccce
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT 45 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~ 45 (365)
++|+|||||+|||++|+.|++.| ++|+|||+.+.+||.+.
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G----~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNG----VAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC----CeEEEEecCCCCCceee
Confidence 48999999999999999999998 99999999999998754
No 218
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.08 E-value=3.5e-06 Score=88.14 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=37.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcccee
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t 46 (365)
++|+|||||+|||++|+.|+++| ++|+|||+.+.+||.+..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G----~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYG----VDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC----CcEEEEecCCCCcceeec
Confidence 58999999999999999999998 999999999999987543
No 219
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.07 E-value=3.7e-05 Score=74.36 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=70.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+.+.+... + .+...
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g----~~Vtli~~~~~~l~~-------------~---------~~~~~---------- 214 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLG----SKVTVIEMLDRILPG-------------E---------DAEVS---------- 214 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CcEEEEEcCCCCCCC-------------C---------CHHHH----------
Confidence 47999999999999999999998 899999997644200 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCC--Ceeec
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEG--KKGIF 159 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g--~~~~~ 159 (365)
..+.+.+.+ .| ++++++++|++|+.++ +++.+.+.+| .++.+
T Consensus 215 --------------------------------~~~~~~l~~-~g-i~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~i~~ 258 (461)
T TIGR01350 215 --------------------------------KVVAKALKK-KG-VKILTNTKVTAVEKND--DQVVYENKGGETETLTG 258 (461)
T ss_pred --------------------------------HHHHHHHHH-cC-CEEEeCCEEEEEEEeC--CEEEEEEeCCcEEEEEe
Confidence 122333443 47 9999999999998776 6777776666 47899
Q ss_pred CEEEEcCCh
Q psy12489 160 DIVVLSMPA 168 (365)
Q Consensus 160 d~vV~a~p~ 168 (365)
|.||+|++.
T Consensus 259 D~vi~a~G~ 267 (461)
T TIGR01350 259 EKVLVAVGR 267 (461)
T ss_pred CEEEEecCC
Confidence 999999874
No 220
>KOG2844|consensus
Probab=98.07 E-value=1.7e-05 Score=76.21 Aligned_cols=53 Identities=9% Similarity=-0.041 Sum_probs=40.6
Q ss_pred HHHHHH---HhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCChhh
Q psy12489 115 SIVKYF---LNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQ 170 (365)
Q Consensus 115 ~l~~~l---~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~~~ 170 (365)
.++++| ++++| ..|..+++|++|.-..+ +.+.|.|..| .+++.++|-|++.+.
T Consensus 188 ~lC~ala~~A~~~G-A~viE~cpV~~i~~~~~-~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 188 GLCQALARAASALG-ALVIENCPVTGLHVETD-KFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHhcC-cEEEecCCcceEEeecC-CccceeccCc-ceecceEEechhHHH
Confidence 344444 45678 99999999999965541 5578888888 488999999998753
No 221
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.06 E-value=1.7e-05 Score=81.59 Aligned_cols=108 Identities=14% Similarity=0.209 Sum_probs=69.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||+|++|+.+|..|.+++...+++|+||++.+.++ ..+.. ++ .++.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r~~-------------L~----------~~~~-- 54 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDRVH-------------LS----------SYFS-- 54 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccCCc-------------ch----------HhHc--
Confidence 4899999999999999999876421248999999987663 00100 00 0000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
........ . ... .+.+..+ ++++.+++|.+|+... ..|.+.+|+++.||+
T Consensus 55 --~~~~~~l~----------------~---~~~----~~~~~~g-I~~~~g~~V~~Id~~~----~~V~~~~G~~i~yD~ 104 (847)
T PRK14989 55 --HHTAEELS----------------L---VRE----GFYEKHG-IKVLVGERAITINRQE----KVIHSSAGRTVFYDK 104 (847)
T ss_pred --CCCHHHcc----------------C---CCH----HHHHhCC-CEEEcCCEEEEEeCCC----cEEEECCCcEEECCE
Confidence 00000000 0 001 1222347 9999999999997754 356677788899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 105 LVIATGs 111 (847)
T PRK14989 105 LIMATGS 111 (847)
T ss_pred EEECCCC
Confidence 9999984
No 222
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.06 E-value=4.1e-05 Score=73.50 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=68.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+.+|..|++.| .+|+|+|+++++..+ . .+.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g----~~Vtli~~~~~~l~~-----~-----------------~~~------------ 199 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLG----SKVTVLDAASTILPR-----E-----------------EPS------------ 199 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CeEEEEecCCccCCC-----C-----------------CHH------------
Confidence 47999999999999999999997 899999998655211 0 000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
+...++...++.| ++++++++|++++.++ +.+.+.+ +++++.+|.
T Consensus 200 -------------------------------~~~~~~~~l~~~G-I~i~~~~~V~~i~~~~--~~v~v~~-~g~~i~~D~ 244 (438)
T PRK07251 200 -------------------------------VAALAKQYMEEDG-ITFLLNAHTTEVKNDG--DQVLVVT-EDETYRFDA 244 (438)
T ss_pred -------------------------------HHHHHHHHHHHcC-CEEEcCCEEEEEEecC--CEEEEEE-CCeEEEcCE
Confidence 0112222233447 9999999999998765 5565554 466899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 245 viva~G~ 251 (438)
T PRK07251 245 LLYATGR 251 (438)
T ss_pred EEEeeCC
Confidence 9999863
No 223
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.05 E-value=2.1e-05 Score=73.53 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.2
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
||+|||+|+|||++|..|.+. ++|+|+-|++..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-----~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-----FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-----CcEEEEeCCCCC
Confidence 899999999999999999997 799999997643
No 224
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.04 E-value=5.1e-05 Score=73.36 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=71.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+++++... + .++..
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g----~~Vtli~~~~~~l~~-------------~---------d~~~~---------- 219 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALG----VKVTLINTRDRLLSF-------------L---------DDEIS---------- 219 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CeEEEEecCCCcCCc-------------C---------CHHHH----------
Confidence 47999999999999999999998 899999997644210 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
..+.+.+. +.| ++++++++|++++..+ +++.+.+.+|+++.+|.
T Consensus 220 --------------------------------~~l~~~l~-~~g-I~v~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~ 263 (461)
T PRK05249 220 --------------------------------DALSYHLR-DSG-VTIRHNEEVEKVEGGD--DGVIVHLKSGKKIKADC 263 (461)
T ss_pred --------------------------------HHHHHHHH-HcC-CEEEECCEEEEEEEeC--CeEEEEECCCCEEEeCE
Confidence 12333343 347 9999999999998766 67777777788899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 264 vi~a~G~ 270 (461)
T PRK05249 264 LLYANGR 270 (461)
T ss_pred EEEeecC
Confidence 9999874
No 225
>PRK07846 mycothione reductase; Reviewed
Probab=98.03 E-value=5e-05 Score=73.10 Aligned_cols=94 Identities=12% Similarity=0.159 Sum_probs=70.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+++++... . .++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G----~~Vtli~~~~~ll~~-----~-----------------d~~------------ 208 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALG----VRVTVVNRSGRLLRH-----L-----------------DDD------------ 208 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CeEEEEEcCCccccc-----c-----------------CHH------------
Confidence 47999999999999999999998 899999987644200 0 000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
+...+..+.+. + ++++++++|++++..+ +++.+.+.+|+++.+|.
T Consensus 209 -------------------------------~~~~l~~l~~~-~-v~i~~~~~v~~i~~~~--~~v~v~~~~g~~i~~D~ 253 (451)
T PRK07846 209 -------------------------------ISERFTELASK-R-WDVRLGRNVVGVSQDG--SGVTLRLDDGSTVEADV 253 (451)
T ss_pred -------------------------------HHHHHHHHHhc-C-eEEEeCCEEEEEEEcC--CEEEEEECCCcEeecCE
Confidence 01222223332 6 8999999999998766 66777777888899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 254 vl~a~G~ 260 (451)
T PRK07846 254 LLVATGR 260 (451)
T ss_pred EEEEECC
Confidence 9999874
No 226
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.03 E-value=6.9e-06 Score=78.02 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=36.4
Q ss_pred CcEEEEccCHHHHHHHHHHH-HhcCCCceeEEEEecCCCCCccceee
Q psy12489 2 KKVLIVGSGITSALTSYLLR-QKLLTDLIHITIWDKARGPGGRMTTS 47 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~-~~g~~~~~~v~v~E~~~~~ggr~~t~ 47 (365)
++|+|||||+||+.+|..|. +.| ++|+|||+.+.+||-+...
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g----~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHER----VKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcC----CeEEEEecCCCCccEEEEe
Confidence 47999999999999999765 566 9999999999999876654
No 227
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.02 E-value=6e-06 Score=79.36 Aligned_cols=39 Identities=26% Similarity=0.446 Sum_probs=36.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
++|+|||||++||++|+.|++.| ++|+|+|+.+.+||.+
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~~G----~~V~vie~~~~~GG~l 172 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAKAG----HSVTVFEALHKPGGVV 172 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC----CcEEEEecCCCCCcEe
Confidence 48999999999999999999998 9999999998888754
No 228
>PRK06116 glutathione reductase; Validated
Probab=98.02 E-value=5.3e-06 Score=79.89 Aligned_cols=37 Identities=11% Similarity=0.219 Sum_probs=34.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||++|+++|..|+++| ++|+|+|+. .+||.
T Consensus 5 ~DvvVIG~GpaG~~aA~~~a~~G----~~V~liE~~-~~GG~ 41 (450)
T PRK06116 5 YDLIVIGGGSGGIASANRAAMYG----AKVALIEAK-RLGGT 41 (450)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CeEEEEecc-chhhh
Confidence 48999999999999999999998 999999996 68875
No 229
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.01 E-value=6.2e-06 Score=79.13 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=34.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC-CCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG-PGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~-~ggr 43 (365)
.||+|||||++|+++|..|+++| .+|+|+|+++. +||.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g----~~V~liE~~~~~~GG~ 42 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAG----KKVALVEESKAMYGGT 42 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCC----CEEEEEecCCccccee
Confidence 49999999999999999999998 99999999864 5765
No 230
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.01 E-value=6.3e-06 Score=79.63 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=34.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||++|+++|..|++.| .+|+|+|+ +.+||.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~g----~~v~lie~-~~~GG~ 40 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKLG----KKVALIEK-GPLGGT 40 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHCC----CeEEEEeC-Cccccc
Confidence 59999999999999999999998 99999999 578875
No 231
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.01 E-value=0.00014 Score=67.35 Aligned_cols=66 Identities=24% Similarity=0.348 Sum_probs=49.0
Q ss_pred CcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEe-eecCCCCc--EEEEecCC---CeeecCEEEEcCChhhH
Q psy12489 103 NVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETM-AKTDSTNQ--IEVTSKEG---KKGIFDIVVLSMPAPQV 171 (365)
Q Consensus 103 ~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i-~~~~~~~~--~~v~~~~g---~~~~~d~vV~a~p~~~~ 171 (365)
....|...+|..++++.|++.-+ .++ ++++|++| ...++ +. +.|+..++ ....+|.||+|+|+.+.
T Consensus 117 ~~gl~sV~GGN~qI~~~ll~~S~-A~v-l~~~Vt~I~~~~~~-~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 117 TGGLWSVEGGNWQIFEGLLEASG-ANV-LNTTVTSITRRSSD-GYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred cCCceEecCCHHHHHHHHHHHcc-CcE-ecceeEEEEeccCC-CceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 45567889999999999999877 899 99999999 44441 22 45655432 23457999999998543
No 232
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.00 E-value=6.8e-06 Score=84.09 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=36.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
++|+|||||+|||++|+.|+++| ++|+|||+.+.+||.+
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G----~~V~v~e~~~~~GG~l 470 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRG----YDVTVFEALHEIGGVL 470 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC----CeEEEEecCCCCCCee
Confidence 58999999999999999999998 9999999988888764
No 233
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.98 E-value=1.8e-05 Score=81.22 Aligned_cols=106 Identities=13% Similarity=0.216 Sum_probs=67.9
Q ss_pred EEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhhhh
Q psy12489 4 VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPLLD 83 (365)
Q Consensus 4 v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l~~ 83 (365)
|+|||||+||+++|..|.+.+.. +++|+|||+.+.++- .+.. ++ .++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~-~~~Itvi~~e~~~~y----~r~~-------------L~----------~~l----- 47 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRH-MFEITIFGEEPHPNY----NRIL-------------LS----------SVL----- 47 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC-CCeEEEEeCCCCCCc----cccc-------------cc----------HHH-----
Confidence 68999999999999999887522 479999999876630 0100 00 000
Q ss_pred cCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEE
Q psy12489 84 EKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVV 163 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV 163 (365)
.|.. ... .... . ... ..++.+ ++++++++|++|+... ..|.+.+|.++.+|+||
T Consensus 48 ~g~~-~~~-------------~l~~--~-~~~----~~~~~g-v~~~~g~~V~~Id~~~----k~V~~~~g~~~~yD~LV 101 (785)
T TIGR02374 48 QGEA-DLD-------------DITL--N-SKD----WYEKHG-ITLYTGETVIQIDTDQ----KQVITDAGRTLSYDKLI 101 (785)
T ss_pred CCCC-CHH-------------HccC--C-CHH----HHHHCC-CEEEcCCeEEEEECCC----CEEEECCCcEeeCCEEE
Confidence 0000 000 0000 0 011 123347 9999999999998754 35667788889999999
Q ss_pred EcCCh
Q psy12489 164 LSMPA 168 (365)
Q Consensus 164 ~a~p~ 168 (365)
+|++.
T Consensus 102 lATGs 106 (785)
T TIGR02374 102 LATGS 106 (785)
T ss_pred ECCCC
Confidence 99984
No 234
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.98 E-value=5.3e-05 Score=72.38 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|+|||||.+|+.+|..|.+.+ .+|+|+|+++
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~----~~ItlI~~~~ 43 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKK----YNITVISPRN 43 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCC----CeEEEEcCCC
Confidence 468999999999999999997654 8999999875
No 235
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.98 E-value=3.2e-05 Score=72.35 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=64.4
Q ss_pred cEEEEccCHHHHHHHHHHHHh-cCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 3 KVLIVGSGITSALTSYLLRQK-LLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~-g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
+|+|||||++|+.+|..|.++ .+ ..+|+|+|+++..- + .... +.+ .
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~--~~~I~li~~~~~~~-------~--------~~~~------~~~-------~--- 47 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLP--GVRVTLINPSSTTP-------Y--------SGML------PGM-------I--- 47 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCC--CCEEEEECCCCCCc-------c--------cchh------hHH-------H---
Confidence 589999999999999999754 22 28999999875320 0 0000 000 0
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
.|.... .. .. .-...+.++.+ ++++.+ +|++|+..+ + .|.+.+|+++.+|+
T Consensus 48 --~g~~~~--------------~~-~~------~~~~~~~~~~g-v~~~~~-~v~~id~~~--~--~V~~~~g~~~~yD~ 98 (364)
T TIGR03169 48 --AGHYSL--------------DE-IR------IDLRRLARQAG-ARFVIA-EATGIDPDR--R--KVLLANRPPLSYDV 98 (364)
T ss_pred --heeCCH--------------HH-hc------ccHHHHHHhcC-CEEEEE-EEEEEeccc--C--EEEECCCCcccccE
Confidence 000000 00 00 00122333457 888765 799998866 4 56667788899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 99 LviAtG~ 105 (364)
T TIGR03169 99 LSLDVGS 105 (364)
T ss_pred EEEccCC
Confidence 9999975
No 236
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.98 E-value=7.7e-05 Score=72.15 Aligned_cols=95 Identities=14% Similarity=0.205 Sum_probs=71.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+++|+.+++... . .+.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g----~~Vtli~~~~~~l~~-----~-----------------d~~------------ 219 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELG----VKVTLVSSRDRVLPG-----E-----------------DAD------------ 219 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CeEEEEEcCCcCCCC-----C-----------------CHH------------
Confidence 47999999999999999999998 999999987654210 0 000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
+...+....++.| ++++++++|.+++.++ +++.+.+.+|+++.+|.
T Consensus 220 -------------------------------~~~~l~~~L~~~g-V~i~~~~~v~~v~~~~--~~~~v~~~~g~~l~~D~ 265 (466)
T PRK07845 220 -------------------------------AAEVLEEVFARRG-MTVLKRSRAESVERTG--DGVVVTLTDGRTVEGSH 265 (466)
T ss_pred -------------------------------HHHHHHHHHHHCC-cEEEcCCEEEEEEEeC--CEEEEEECCCcEEEecE
Confidence 0122222333447 9999999999998766 66777777888899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||++++.
T Consensus 266 vl~a~G~ 272 (466)
T PRK07845 266 ALMAVGS 272 (466)
T ss_pred EEEeecC
Confidence 9999763
No 237
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.97 E-value=7.2e-06 Score=78.89 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=34.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
.||+|||||++|+++|+.|+++| .+|+|+|+. .+||..
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G----~~V~liE~~-~~GG~c 40 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHG----AKALLVEAK-KLGGTC 40 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC----CcEEEeccc-ccccce
Confidence 59999999999999999999998 999999995 588753
No 238
>PRK06370 mercuric reductase; Validated
Probab=97.96 E-value=8.9e-06 Score=78.66 Aligned_cols=37 Identities=11% Similarity=0.227 Sum_probs=33.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||++|+++|+.|+++| .+|+|+|+. .+||.
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G----~~v~lie~~-~~GG~ 42 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLG----MKVALIERG-LLGGT 42 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC----CeEEEEecC-ccCCc
Confidence 59999999999999999999998 999999986 57765
No 239
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.96 E-value=9.1e-06 Score=78.66 Aligned_cols=39 Identities=31% Similarity=0.448 Sum_probs=36.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
++|+|||||++|+++|+.|++.| ++|+|||+.+.+||.+
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G----~~V~vie~~~~~GG~l 182 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAG----HKVTVFERADRIGGLL 182 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC----CcEEEEecCCCCCcee
Confidence 48999999999999999999998 9999999999898764
No 240
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.95 E-value=7.8e-06 Score=77.80 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=38.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceee
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTS 47 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~ 47 (365)
++|+|||||++||++|..|+++| ++|+|+|+.+.+||++...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G----~~Vtv~e~~~~~GGll~yG 165 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAG----HDVTVFERVALDGGLLLYG 165 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCC----CeEEEeCCcCCCceeEEec
Confidence 47999999999999999999998 9999999999999986654
No 241
>PLN02507 glutathione reductase
Probab=97.95 E-value=9.5e-05 Score=72.05 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=70.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+++.+++-.. . .++..
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G----~~Vtli~~~~~~l~~-----~-----------------d~~~~---------- 247 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMG----ATVDLFFRKELPLRG-----F-----------------DDEMR---------- 247 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcC----CeEEEEEecCCcCcc-----c-----------------CHHHH----------
Confidence 47999999999999999999997 899999986533100 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
..+.+.|. +.| ++++++++|++++..+ +++.+.+.+|+++.+|.
T Consensus 248 --------------------------------~~l~~~l~-~~G-I~i~~~~~V~~i~~~~--~~~~v~~~~g~~i~~D~ 291 (499)
T PLN02507 248 --------------------------------AVVARNLE-GRG-INLHPRTNLTQLTKTE--GGIKVITDHGEEFVADV 291 (499)
T ss_pred --------------------------------HHHHHHHH-hCC-CEEEeCCEEEEEEEeC--CeEEEEECCCcEEEcCE
Confidence 12223333 447 9999999999998766 66777777888899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||++++.
T Consensus 292 vl~a~G~ 298 (499)
T PLN02507 292 VLFATGR 298 (499)
T ss_pred EEEeecC
Confidence 9999873
No 242
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.95 E-value=8.9e-06 Score=80.72 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=33.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||+|+|||+||..++++| .+|+|+||....||
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G----~~V~lieK~~~~~g 40 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAG----VHVDLFSLVPVKRS 40 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcC----CcEEEEEccCCCCC
Confidence 59999999999999999999998 99999999876554
No 243
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.94 E-value=9.8e-05 Score=70.33 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=72.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++++|||||..|+=.|..+++.| .+|+|+|+.+++-.. + +++..
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG----~~VTiie~~~~iLp~-------------~---------D~ei~---------- 217 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALG----SKVTVVERGDRILPG-------------E---------DPEIS---------- 217 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC----CcEEEEecCCCCCCc-------------C---------CHHHH----------
Confidence 46999999999999999999998 999999998866310 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCC--eeec
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGK--KGIF 159 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~--~~~~ 159 (365)
..+.+.|.+ .+ .+++++++|++++..+ +++.+.+++|. ++.+
T Consensus 218 --------------------------------~~~~~~l~~-~g-v~i~~~~~v~~~~~~~--~~v~v~~~~g~~~~~~a 261 (454)
T COG1249 218 --------------------------------KELTKQLEK-GG-VKILLNTKVTAVEKKD--DGVLVTLEDGEGGTIEA 261 (454)
T ss_pred --------------------------------HHHHHHHHh-CC-eEEEccceEEEEEecC--CeEEEEEecCCCCEEEe
Confidence 123344444 46 8999999999999887 66888887775 6889
Q ss_pred CEEEEcCC
Q psy12489 160 DIVVLSMP 167 (365)
Q Consensus 160 d~vV~a~p 167 (365)
|.|++|++
T Consensus 262 d~vLvAiG 269 (454)
T COG1249 262 DAVLVAIG 269 (454)
T ss_pred eEEEEccC
Confidence 99999986
No 244
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.94 E-value=1e-05 Score=78.22 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=33.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||++|+++|..|+++| .+|+|+|+.. +||.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g----~~v~lie~~~-~GG~ 37 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELG----ASVAMVERGP-LGGT 37 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CeEEEEeCCc-ccCC
Confidence 48999999999999999999998 9999999875 7765
No 245
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.94 E-value=1.1e-05 Score=79.60 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=35.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC--CCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR--GPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~--~~ggr~ 44 (365)
.||+|||+|+|||+||..++++| .+|+||||.. .+||..
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G----~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAG----KRVLLLDQENEANLGGQA 45 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC----CeEEEEeCCCCCCCCCce
Confidence 49999999999999999999998 9999999998 778753
No 246
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.94 E-value=1e-05 Score=81.30 Aligned_cols=41 Identities=37% Similarity=0.540 Sum_probs=37.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcccee
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t 46 (365)
++|+|||||++||++|+.|++.| ++|+|||+.+.+||.+..
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G----~~Vtv~e~~~~~GG~l~~ 234 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKG----HDVTIFDANEQAGGMMRY 234 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC----CcEEEEecCCCCCceeee
Confidence 58999999999999999999998 999999999999987543
No 247
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.94 E-value=6.3e-05 Score=71.37 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=74.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++++|||+|+.|+.+|..|+++| ++|+++|+.++++++... +
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G----~~v~l~e~~~~~~~~~~~---------------------~------------- 178 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRG----KKVTLIEAADRLGGQLLD---------------------P------------- 178 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcC----CeEEEEEcccccchhhhh---------------------H-------------
Confidence 68999999999999999999998 999999999988754111 0
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEE---EEecCCCeee
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIE---VTSKEGKKGI 158 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~---v~~~~g~~~~ 158 (365)
.+...+..+.+..| +++++++.+.+|+... +... +...++..+.
T Consensus 179 ------------------------------~~~~~~~~~l~~~g-i~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~ 225 (415)
T COG0446 179 ------------------------------EVAEELAELLEKYG-VELLLGTKVVGVEGKG--NTLVVERVVGIDGEEIK 225 (415)
T ss_pred ------------------------------HHHHHHHHHHHHCC-cEEEeCCceEEEEccc--CcceeeEEEEeCCcEEE
Confidence 01233334445558 9999999999998776 4433 5667778899
Q ss_pred cCEEEEcCCh
Q psy12489 159 FDIVVLSMPA 168 (365)
Q Consensus 159 ~d~vV~a~p~ 168 (365)
+|.++++++.
T Consensus 226 ~d~~~~~~g~ 235 (415)
T COG0446 226 ADLVIIGPGE 235 (415)
T ss_pred eeEEEEeecc
Confidence 9999999873
No 248
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.94 E-value=1.1e-05 Score=77.89 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=35.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
++|+|||||++|+++|+.|+++| ++|+|+|+.+.+||.
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~g----~~V~lie~~~~~gG~ 178 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKG----YDVTIFEARDKAGGL 178 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC----CeEEEEccCCCCCcE
Confidence 58999999999999999999998 999999999888875
No 249
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.93 E-value=0.0001 Score=70.88 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=70.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+++.+... + .++..
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G----~~Vtli~~~~~~l~~-------------~---------d~~~~---------- 210 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLG----VQVTLIYRGELILRG-------------F---------DDDMR---------- 210 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcC----CeEEEEEeCCCCCcc-------------c---------CHHHH----------
Confidence 46999999999999999999997 899999986543100 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
..+.+.|. +.| ++++++++|.+++..+ +++.+.+.+|+++.+|.
T Consensus 211 --------------------------------~~l~~~l~-~~g-V~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~ 254 (446)
T TIGR01424 211 --------------------------------ALLARNME-GRG-IRIHPQTSLTSITKTD--DGLKVTLSHGEEIVADV 254 (446)
T ss_pred --------------------------------HHHHHHHH-HCC-CEEEeCCEEEEEEEcC--CeEEEEEcCCcEeecCE
Confidence 12223333 347 9999999999998766 66777777788899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 255 viva~G~ 261 (446)
T TIGR01424 255 VLFATGR 261 (446)
T ss_pred EEEeeCC
Confidence 9999874
No 250
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.93 E-value=1.2e-05 Score=77.69 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=36.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccce
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT 45 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~ 45 (365)
++|+|||||++|+++|+.|+++| ++|+|+|+.+.+||.+.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G----~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAG----VQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CeEEEEecCCCCCceee
Confidence 47999999999999999999998 99999999999998654
No 251
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=1.1e-05 Score=78.02 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=34.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
.||+|||||++|+++|..|+++| .+|+|+|++ .+||..
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G----~~V~lie~~-~~GG~c 42 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLG----LKTAVVEKK-YWGGVC 42 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC----CeEEEEecC-CCCCce
Confidence 49999999999999999999998 999999985 577763
No 252
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.93 E-value=1e-05 Score=85.01 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=38.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcccee
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t 46 (365)
+||+|||||+|||++|+.|++.| ++|+|+|+.+.+||.+..
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G----~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAG----ARVILVDEQPEAGGSLLS 204 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC----CcEEEEecCCCCCCeeec
Confidence 48999999999999999999998 999999999999997654
No 253
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.92 E-value=1e-05 Score=82.41 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=32.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPG 41 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~g 41 (365)
++|+|||||+||+++|+.|++.| ++|+|||+.+..|
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~G----h~Vtv~E~~~i~g 419 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSG----HNVTAIDGLKITL 419 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCC----CeEEEEccccccc
Confidence 58999999999999999999998 9999999975443
No 254
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.92 E-value=1.1e-05 Score=75.81 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=33.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPG 41 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~g 41 (365)
++|+|||||++|+.+|+.|+++| ++|+|+|+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G----~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAG----VPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC----CcEEEEecccccc
Confidence 48999999999999999999998 9999999877654
No 255
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.91 E-value=7.6e-05 Score=76.64 Aligned_cols=96 Identities=14% Similarity=0.189 Sum_probs=70.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||++|+-+|..|++.| .+|+|+|+.+++-.+ .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G----~~Vtvv~~~~~ll~~----~--------------------------------- 179 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLG----MDVSVIHHAPGLMAK----Q--------------------------------- 179 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC----CeEEEEccCCchhhh----h---------------------------------
Confidence 47999999999999999999998 999999986533100 0
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
+. ..+...++...++.| +++++++.|+++..++ ....+.+.+|+++.+|.
T Consensus 180 --------ld-------------------~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~--~~~~v~~~dG~~i~~D~ 229 (785)
T TIGR02374 180 --------LD-------------------QTAGRLLQRELEQKG-LTFLLEKDTVEIVGAT--KADRIRFKDGSSLEADL 229 (785)
T ss_pred --------cC-------------------HHHHHHHHHHHHHcC-CEEEeCCceEEEEcCC--ceEEEEECCCCEEEcCE
Confidence 00 001223333334558 9999999999997654 45567788898999999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||++++.
T Consensus 230 Vi~a~G~ 236 (785)
T TIGR02374 230 IVMAAGI 236 (785)
T ss_pred EEECCCC
Confidence 9999874
No 256
>PRK06116 glutathione reductase; Validated
Probab=97.91 E-value=0.00011 Score=70.69 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=70.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+++++++.+.. . + .++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g----~~Vtlv~~~~~~l~-----~--------~---------~~~~----------- 210 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLG----SETHLFVRGDAPLR-----G--------F---------DPDI----------- 210 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CeEEEEecCCCCcc-----c--------c---------CHHH-----------
Confidence 47999999999999999999997 89999998754310 0 0 0000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCc-EEEEecCCCeeecC
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQ-IEVTSKEGKKGIFD 160 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~-~~v~~~~g~~~~~d 160 (365)
...+.+.|. +.| ++++++++|.+++.++ ++ +.+.+.+|+++.+|
T Consensus 211 -------------------------------~~~l~~~L~-~~G-V~i~~~~~V~~i~~~~--~g~~~v~~~~g~~i~~D 255 (450)
T PRK06116 211 -------------------------------RETLVEEME-KKG-IRLHTNAVPKAVEKNA--DGSLTLTLEDGETLTVD 255 (450)
T ss_pred -------------------------------HHHHHHHHH-HCC-cEEECCCEEEEEEEcC--CceEEEEEcCCcEEEeC
Confidence 012333333 347 9999999999998765 44 67777888889999
Q ss_pred EEEEcCCh
Q psy12489 161 IVVLSMPA 168 (365)
Q Consensus 161 ~vV~a~p~ 168 (365)
.||+|++.
T Consensus 256 ~Vv~a~G~ 263 (450)
T PRK06116 256 CLIWAIGR 263 (450)
T ss_pred EEEEeeCC
Confidence 99999863
No 257
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.91 E-value=1.2e-05 Score=80.63 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=37.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccce
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT 45 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~ 45 (365)
++|+|||||++||++|+.|++.| ++|+|||+.+.+||.+.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G----~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAG----VQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcC----CcEEEEeCCCCCCCeee
Confidence 58999999999999999999998 99999999999998754
No 258
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.90 E-value=1.3e-05 Score=78.13 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=30.8
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
|.||+|||||++|+++|..|+++| .+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G----~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHG----KKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCC----CeEEEEecc
Confidence 469999999999999999999998 999999973
No 259
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.90 E-value=1.4e-05 Score=67.84 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.2
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
||+|||||+||+++|..|++.+ ++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~----~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG----AKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----SEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCC----CeEEEEecccc
Confidence 7999999999999999999987 99999987653
No 260
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.89 E-value=1.3e-05 Score=79.49 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=35.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+|++||++|+.++++| .+|+||||....||.
T Consensus 12 ~DVvVVG~G~AGl~AA~~aae~G----~~VivlEk~~~~gG~ 49 (584)
T PRK12835 12 VDVLVVGSGGGGMTAALTAAARG----LDTLVVEKSAHFGGS 49 (584)
T ss_pred CCEEEECccHHHHHHHHHHHHCC----CcEEEEEcCCCCCch
Confidence 49999999999999999999998 999999999888874
No 261
>PRK06370 mercuric reductase; Validated
Probab=97.88 E-value=0.00015 Score=70.20 Aligned_cols=95 Identities=11% Similarity=0.153 Sum_probs=67.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+++++..+ . .++..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G----~~Vtli~~~~~~l~~-----~-----------------~~~~~---------- 215 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFG----SEVTVIERGPRLLPR-----E-----------------DEDVA---------- 215 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC----CeEEEEEcCCCCCcc-----c-----------------CHHHH----------
Confidence 47999999999999999999998 899999997655210 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEe--cC-CCeee
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTS--KE-GKKGI 158 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~--~~-g~~~~ 158 (365)
..+.+.| ++.| ++++++++|.+++..+ ++..+.. .+ +.++.
T Consensus 216 --------------------------------~~l~~~l-~~~G-V~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~i~ 259 (463)
T PRK06370 216 --------------------------------AAVREIL-EREG-IDVRLNAECIRVERDG--DGIAVGLDCNGGAPEIT 259 (463)
T ss_pred --------------------------------HHHHHHH-HhCC-CEEEeCCEEEEEEEcC--CEEEEEEEeCCCceEEE
Confidence 1222223 3447 9999999999998766 5544433 22 34689
Q ss_pred cCEEEEcCCh
Q psy12489 159 FDIVVLSMPA 168 (365)
Q Consensus 159 ~d~vV~a~p~ 168 (365)
+|.||+|++.
T Consensus 260 ~D~Vi~A~G~ 269 (463)
T PRK06370 260 GSHILVAVGR 269 (463)
T ss_pred eCEEEECcCC
Confidence 9999999873
No 262
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.88 E-value=0.00013 Score=70.27 Aligned_cols=95 Identities=15% Similarity=0.095 Sum_probs=69.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+++++... . .++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g----~~Vtli~~~~~il~~-----~-----------------d~~~----------- 209 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLG----SETHLVIRHERVLRS-----F-----------------DSMI----------- 209 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CcEEEEecCCCCCcc-----c-----------------CHHH-----------
Confidence 47999999999999999999998 899999987654200 0 0000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCc-EEEEecCC-Ceeec
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQ-IEVTSKEG-KKGIF 159 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~-~~v~~~~g-~~~~~ 159 (365)
...+.+.|. +.| ++++++++|++++.+. ++ +.+.+.+| +.+.+
T Consensus 210 -------------------------------~~~~~~~l~-~~g-I~i~~~~~v~~i~~~~--~~~~~v~~~~g~~~i~~ 254 (450)
T TIGR01421 210 -------------------------------SETITEEYE-KEG-INVHKLSKPVKVEKTV--EGKLVIHFEDGKSIDDV 254 (450)
T ss_pred -------------------------------HHHHHHHHH-HcC-CEEEcCCEEEEEEEeC--CceEEEEECCCcEEEEc
Confidence 012333343 347 9999999999998754 33 56666677 46899
Q ss_pred CEEEEcCCh
Q psy12489 160 DIVVLSMPA 168 (365)
Q Consensus 160 d~vV~a~p~ 168 (365)
|.||+|++.
T Consensus 255 D~vi~a~G~ 263 (450)
T TIGR01421 255 DELIWAIGR 263 (450)
T ss_pred CEEEEeeCC
Confidence 999999874
No 263
>KOG0404|consensus
Probab=97.88 E-value=0.00012 Score=61.41 Aligned_cols=107 Identities=18% Similarity=0.325 Sum_probs=68.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC----CCCCccceeecCCCCCCeeeecccceeecChhcchhHHHh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA----RGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDI 77 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~----~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~ 77 (365)
.+|+|||+|+++-.+|.+++++. ++.++||.- -.+||+..|...-
T Consensus 9 e~v~IiGSGPAa~tAAiYaarae----lkPllfEG~~~~~i~pGGQLtTTT~v--------------------------- 57 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAE----LKPLLFEGMMANGIAPGGQLTTTTDV--------------------------- 57 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcc----cCceEEeeeeccCcCCCceeeeeecc---------------------------
Confidence 48999999999999999999997 999999963 2334443332210
Q ss_pred hhhhhhcCcccccccccccccccCCCcceEEcCCChHHHHHHHH---hhCCCceEEEeeeeEEeeecCCCCcEEEEecCC
Q psy12489 78 YQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFL---NKSNIDEICYNTFLETMAKTDSTNQIEVTSKEG 154 (365)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~---~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g 154 (365)
.++.. +++ ...| ..|.+.+. ++.| .+|. -..|.+++.+. ..+.+-+..
T Consensus 58 ----------eNfPG----FPd---------gi~G-~~l~d~mrkqs~r~G-t~i~-tEtVskv~~ss--kpF~l~td~- 108 (322)
T KOG0404|consen 58 ----------ENFPG----FPD---------GITG-PELMDKMRKQSERFG-TEII-TETVSKVDLSS--KPFKLWTDA- 108 (322)
T ss_pred ----------ccCCC----CCc---------cccc-HHHHHHHHHHHHhhc-ceee-eeehhhccccC--CCeEEEecC-
Confidence 11111 000 0001 13333333 3445 5554 45688898887 788887754
Q ss_pred CeeecCEEEEcCCh
Q psy12489 155 KKGIFDIVVLSMPA 168 (365)
Q Consensus 155 ~~~~~d~vV~a~p~ 168 (365)
+.+.||.||+|+..
T Consensus 109 ~~v~~~avI~atGA 122 (322)
T KOG0404|consen 109 RPVTADAVILATGA 122 (322)
T ss_pred CceeeeeEEEeccc
Confidence 46899999999985
No 264
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.87 E-value=0.00014 Score=70.10 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=69.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+.+++... . .++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G----~~Vtli~~~~~ll~~-----~-----------------d~~~----------- 212 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALG----TRVTIVNRSTKLLRH-----L-----------------DEDI----------- 212 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC----CcEEEEEccCccccc-----c-----------------CHHH-----------
Confidence 47999999999999999999998 899999987544200 0 0000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
...+..+.+. + +++++++.|++++.++ +++.+.+.+|+++.+|.
T Consensus 213 --------------------------------~~~l~~~~~~-g-I~i~~~~~V~~i~~~~--~~v~v~~~~g~~i~~D~ 256 (452)
T TIGR03452 213 --------------------------------SDRFTEIAKK-K-WDIRLGRNVTAVEQDG--DGVTLTLDDGSTVTADV 256 (452)
T ss_pred --------------------------------HHHHHHHHhc-C-CEEEeCCEEEEEEEcC--CeEEEEEcCCCEEEcCE
Confidence 0111222332 6 8999999999998766 66777777787899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||++++.
T Consensus 257 vl~a~G~ 263 (452)
T TIGR03452 257 LLVATGR 263 (452)
T ss_pred EEEeecc
Confidence 9999873
No 265
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.87 E-value=0.00014 Score=70.59 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=66.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+++++... + .+...
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g----~~Vtli~~~~~il~~-------------~---------~~~~~---------- 224 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFG----VEVTVVEAADRILPT-------------E---------DAELS---------- 224 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC----CeEEEEEecCccCCc-------------C---------CHHHH----------
Confidence 47999999999999999999997 899999997644100 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeec-CCCCcE-EEEecCCC--ee
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKT-DSTNQI-EVTSKEGK--KG 157 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~-~~~~~~-~v~~~~g~--~~ 157 (365)
..+.+.|. +.| ++++++++|++++.. + +++ .+.+.+|+ ++
T Consensus 225 --------------------------------~~l~~~l~-~~g-I~i~~~~~v~~i~~~~~--~~~~~~~~~~g~~~~i 268 (472)
T PRK05976 225 --------------------------------KEVARLLK-KLG-VRVVTGAKVLGLTLKKD--GGVLIVAEHNGEEKTL 268 (472)
T ss_pred --------------------------------HHHHHHHH-hcC-CEEEeCcEEEEEEEecC--CCEEEEEEeCCceEEE
Confidence 12223343 447 999999999999752 3 333 34445663 68
Q ss_pred ecCEEEEcCCh
Q psy12489 158 IFDIVVLSMPA 168 (365)
Q Consensus 158 ~~d~vV~a~p~ 168 (365)
.+|.||+|++.
T Consensus 269 ~~D~vi~a~G~ 279 (472)
T PRK05976 269 EADKVLVSVGR 279 (472)
T ss_pred EeCEEEEeeCC
Confidence 89999999874
No 266
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.87 E-value=0.00012 Score=70.71 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=67.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+.+++..+ + .++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g----~~Vtli~~~~~~l~~-------------~---------d~~------------ 208 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLG----SEVTILQRSDRLLPR-------------E---------EPE------------ 208 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CcEEEEEcCCcCCCc-------------c---------CHH------------
Confidence 47999999999999999999998 899999987644200 0 000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEec---CCCeee
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSK---EGKKGI 158 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~---~g~~~~ 158 (365)
+...++...++.| ++++++++|++++.++ +.+.+.+. +++++.
T Consensus 209 -------------------------------~~~~l~~~l~~~g-V~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~i~ 254 (463)
T TIGR02053 209 -------------------------------ISAAVEEALAEEG-IEVVTSAQVKAVSVRG--GGKIITVEKPGGQGEVE 254 (463)
T ss_pred -------------------------------HHHHHHHHHHHcC-CEEEcCcEEEEEEEcC--CEEEEEEEeCCCceEEE
Confidence 0112222333447 9999999999998765 55555443 235789
Q ss_pred cCEEEEcCCh
Q psy12489 159 FDIVVLSMPA 168 (365)
Q Consensus 159 ~d~vV~a~p~ 168 (365)
+|.||+|++.
T Consensus 255 ~D~ViiA~G~ 264 (463)
T TIGR02053 255 ADELLVATGR 264 (463)
T ss_pred eCEEEEeECC
Confidence 9999999863
No 267
>PRK14694 putative mercuric reductase; Provisional
Probab=97.86 E-value=1.5e-05 Score=77.06 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=34.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||++|+++|..|+++| .+|+|+|+. .+||.
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~g----~~v~lie~~-~~GGt 43 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATERG----ARVTLIERG-TIGGT 43 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC----CcEEEEEcc-ccccc
Confidence 48999999999999999999998 999999996 58875
No 268
>PRK13748 putative mercuric reductase; Provisional
Probab=97.85 E-value=1.5e-05 Score=78.94 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=34.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
+||+|||||++|+++|..|+++| .+|+|+|++ .+||.
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G----~~v~lie~~-~~GG~ 135 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQG----ARVTLIERG-TIGGT 135 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCC----CeEEEEecC-cceee
Confidence 59999999999999999999998 999999997 78875
No 269
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.85 E-value=0.00017 Score=69.79 Aligned_cols=95 Identities=22% Similarity=0.270 Sum_probs=67.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+.+++... + .++.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G----~~Vtlv~~~~~~l~~-------------~---------d~~~----------- 215 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYG----VDVTIVEFLDRALPN-------------E---------DAEV----------- 215 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcC----CeEEEEecCCCcCCc-------------c---------CHHH-----------
Confidence 47999999999999999999998 899999986544200 0 0000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEec--CCC--ee
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSK--EGK--KG 157 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~--~g~--~~ 157 (365)
...+.+.|. +.| ++++++++|++++..+ +.+.+.+. +|+ ++
T Consensus 216 -------------------------------~~~l~~~l~-~~g-V~i~~~~~v~~i~~~~--~~~~v~~~~~~g~~~~i 260 (466)
T PRK07818 216 -------------------------------SKEIAKQYK-KLG-VKILTGTKVESIDDNG--SKVTVTVSKKDGKAQEL 260 (466)
T ss_pred -------------------------------HHHHHHHHH-HCC-CEEEECCEEEEEEEeC--CeEEEEEEecCCCeEEE
Confidence 012333344 347 9999999999998765 55555443 563 68
Q ss_pred ecCEEEEcCCh
Q psy12489 158 IFDIVVLSMPA 168 (365)
Q Consensus 158 ~~d~vV~a~p~ 168 (365)
.+|.||+|++.
T Consensus 261 ~~D~vi~a~G~ 271 (466)
T PRK07818 261 EADKVLQAIGF 271 (466)
T ss_pred EeCEEEECcCc
Confidence 99999999863
No 270
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.85 E-value=0.00013 Score=75.17 Aligned_cols=98 Identities=11% Similarity=0.088 Sum_probs=70.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++++|||||+.|+-+|..|++.| .+|+|+|..+++-.+ . +
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G----~~VtvVe~~~~ll~~----~--------l------------------------ 185 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLG----VETHVIEFAPMLMAE----Q--------L------------------------ 185 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CeEEEEeccccchhh----h--------c------------------------
Confidence 46999999999999999999998 899999986543100 0 0
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
. ......+....++.| +++++++.|++|..++......+.+.+|+++.+|.
T Consensus 186 ---------d-------------------~~~~~~l~~~L~~~G-V~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~ 236 (847)
T PRK14989 186 ---------D-------------------QMGGEQLRRKIESMG-VRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDF 236 (847)
T ss_pred ---------C-------------------HHHHHHHHHHHHHCC-CEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCE
Confidence 0 001223333344558 99999999999976431133567788898999999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 237 Vv~A~G~ 243 (847)
T PRK14989 237 IVFSTGI 243 (847)
T ss_pred EEECCCc
Confidence 9999874
No 271
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.84 E-value=0.00015 Score=69.36 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=66.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+++++++.+..+ .+.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g----~~Vtli~~~~~~~~~-------------------------~~~---------- 178 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERG----KNVTLIHRSERILNK-------------------------LFD---------- 178 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC----CcEEEEECCcccCcc-------------------------ccC----------
Confidence 47999999999999999999997 899999987543100 000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
..+...+....++.| ++++++++|.+++.++ . + +.+.+|+++.+|.
T Consensus 179 -----------------------------~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~--~-~-v~~~~g~~i~~D~ 224 (427)
T TIGR03385 179 -----------------------------EEMNQIVEEELKKHE-INLRLNEEVDSIEGEE--R-V-KVFTSGGVYQADM 224 (427)
T ss_pred -----------------------------HHHHHHHHHHHHHcC-CEEEeCCEEEEEecCC--C-E-EEEcCCCEEEeCE
Confidence 000111222233458 9999999999997644 3 3 4556788899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 225 vi~a~G~ 231 (427)
T TIGR03385 225 VILATGI 231 (427)
T ss_pred EEECCCc
Confidence 9999874
No 272
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.82 E-value=1.5e-05 Score=72.37 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=30.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPG 41 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~g 41 (365)
.|++|||+|.+|+.+|.+|++.+ ..+|+|+|++....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~---~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAG---NKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTST---TS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCC---CCcEEEEEccccCc
Confidence 48999999999999999999986 37999999986543
No 273
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.82 E-value=2e-05 Score=77.71 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=35.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+|++|+++|+.|+++| .+|+|||+....||.
T Consensus 7 ~DvvIiG~G~aGl~aA~~~a~~G----~~v~liEk~~~~gG~ 44 (557)
T PRK12844 7 YDVVVVGSGGGGMCAALAAADSG----LEPLIVEKQDKVGGS 44 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC----CcEEEEecCCCCCce
Confidence 58999999999999999999998 999999999877875
No 274
>PRK14727 putative mercuric reductase; Provisional
Probab=97.82 E-value=2.1e-05 Score=76.40 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=35.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||++|+++|+.|++.| .+|+|+|+++.+||.
T Consensus 17 ~dvvvIG~G~aG~~~a~~~~~~g----~~v~~ie~~~~~GG~ 54 (479)
T PRK14727 17 LHVAIIGSGSAAFAAAIKAAEHG----ARVTIIEGADVIGGC 54 (479)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC----CeEEEEEccCcceeE
Confidence 59999999999999999999998 999999998889876
No 275
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.82 E-value=2.3e-05 Score=76.04 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=36.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccce
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT 45 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~ 45 (365)
++|+|||||++|+++|..|+++| ++|+|||+.+.+||.+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g----~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAG----HTVTVFEREDRCGGLLM 183 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC----CeEEEEecCCCCCceee
Confidence 48999999999999999999998 99999999999988654
No 276
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.82 E-value=0.0002 Score=69.47 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=68.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+++.+... . .+++.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g----~~Vtli~~~~~~l~~-------------~---------d~~~~---------- 227 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLG----AEVTILEALPAFLAA-------------A---------DEQVA---------- 227 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CeEEEEeCCCccCCc-------------C---------CHHHH----------
Confidence 47999999999999999999997 899999987644200 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecC--C--Cee
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKE--G--KKG 157 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~--g--~~~ 157 (365)
..+.+.|.+ .| ++++++++|++++.++ +++.+...+ | .++
T Consensus 228 --------------------------------~~~~~~l~~-~g-i~i~~~~~v~~i~~~~--~~v~v~~~~~~g~~~~i 271 (475)
T PRK06327 228 --------------------------------KEAAKAFTK-QG-LDIHLGVKIGEIKTGG--KGVSVAYTDADGEAQTL 271 (475)
T ss_pred --------------------------------HHHHHHHHH-cC-cEEEeCcEEEEEEEcC--CEEEEEEEeCCCceeEE
Confidence 122233433 47 9999999999998776 666655433 3 368
Q ss_pred ecCEEEEcCCh
Q psy12489 158 IFDIVVLSMPA 168 (365)
Q Consensus 158 ~~d~vV~a~p~ 168 (365)
.+|.||++++.
T Consensus 272 ~~D~vl~a~G~ 282 (475)
T PRK06327 272 EVDKLIVSIGR 282 (475)
T ss_pred EcCEEEEccCC
Confidence 89999999873
No 277
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.79 E-value=0.00026 Score=68.39 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=66.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+.+++... . .+++
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g----~~Vtli~~~~~ll~~-------------~---------d~e~----------- 213 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLG----TKVTIVEMAPQLLPG-------------E---------DEDI----------- 213 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC----CeEEEEecCCCcCcc-------------c---------cHHH-----------
Confidence 47999999999999999999997 899999997644200 0 0000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCC-CeeecC
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEG-KKGIFD 160 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g-~~~~~d 160 (365)
...+.+.|. +.| ++++++++|++++..+ ..+.+...++ .++.+|
T Consensus 214 -------------------------------~~~l~~~L~-~~G-I~i~~~~~V~~i~~~~--~~v~~~~~g~~~~i~~D 258 (458)
T PRK06912 214 -------------------------------AHILREKLE-NDG-VKIFTGAALKGLNSYK--KQALFEYEGSIQEVNAE 258 (458)
T ss_pred -------------------------------HHHHHHHHH-HCC-CEEEECCEEEEEEEcC--CEEEEEECCceEEEEeC
Confidence 012333344 347 9999999999998765 5555544322 368899
Q ss_pred EEEEcCCh
Q psy12489 161 IVVLSMPA 168 (365)
Q Consensus 161 ~vV~a~p~ 168 (365)
.||+|++.
T Consensus 259 ~vivA~G~ 266 (458)
T PRK06912 259 FVLVSVGR 266 (458)
T ss_pred EEEEecCC
Confidence 99999873
No 278
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.78 E-value=0.00055 Score=63.55 Aligned_cols=42 Identities=31% Similarity=0.346 Sum_probs=36.3
Q ss_pred hCCCceEEEeeeeEEeeecCCCCc-EEEEecCCCeeecCEEEEcCC
Q psy12489 123 KSNIDEICYNTFLETMAKTDSTNQ-IEVTSKEGKKGIFDIVVLSMP 167 (365)
Q Consensus 123 ~~g~~~i~~~~~V~~i~~~~~~~~-~~v~~~~g~~~~~d~vV~a~p 167 (365)
++| ++++++++|+.|+..+ +. ..+.+.+|.++.+|+||+|.+
T Consensus 185 ~~G-~ei~f~t~VeDi~~~~--~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 185 SLG-GEIRFNTEVEDIEIED--NEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred hcC-cEEEeeeEEEEEEecC--CceEEEEccCCcEEecCEEEEccC
Confidence 458 9999999999999877 54 467788898999999999986
No 279
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.77 E-value=2.9e-05 Score=76.95 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=36.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccce
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT 45 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~ 45 (365)
++|+|||||++||++|+.|++.| ++|+|+|+.+.+||.+.
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G----~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMG----HAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC----CeEEEEecCCCCCCeee
Confidence 47999999999999999999998 89999999999998643
No 280
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.77 E-value=0.00029 Score=68.21 Aligned_cols=95 Identities=11% Similarity=0.130 Sum_probs=66.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||..|+-+|..|++.| .+|+|+|+.+++... + .++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G----~~Vtlie~~~~il~~-------------~---------d~~~~---------- 218 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLG----AQVTVVEYLDRICPG-------------T---------DTETA---------- 218 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CeEEEEeCCCCCCCC-------------C---------CHHHH----------
Confidence 47999999999999999999998 899999987654200 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEec---C--CCe
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSK---E--GKK 156 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~---~--g~~ 156 (365)
..+.+.|. +.| ++++++++|++++.++ +++.+... + +++
T Consensus 219 --------------------------------~~l~~~l~-~~g-V~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~ 262 (466)
T PRK06115 219 --------------------------------KTLQKALT-KQG-MKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAET 262 (466)
T ss_pred --------------------------------HHHHHHHH-hcC-CEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeE
Confidence 12223333 347 9999999999998765 55554432 2 246
Q ss_pred eecCEEEEcCCh
Q psy12489 157 GIFDIVVLSMPA 168 (365)
Q Consensus 157 ~~~d~vV~a~p~ 168 (365)
+.+|.||+|++.
T Consensus 263 i~~D~vi~a~G~ 274 (466)
T PRK06115 263 LQADYVLVAIGR 274 (466)
T ss_pred EEeCEEEEccCC
Confidence 899999999873
No 281
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.76 E-value=3e-05 Score=76.60 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=35.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+|++|+++|+.|+++| .+|+||||...+||.
T Consensus 8 ~DvvVvG~G~aG~~aA~~aa~~G----~~v~llEk~~~~gG~ 45 (557)
T PRK07843 8 YDVVVVGSGAAGMVAALTAAHRG----LSTVVVEKAPHYGGS 45 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC----CCEEEEeCCCCCCcc
Confidence 49999999999999999999998 999999999877764
No 282
>KOG2665|consensus
Probab=97.76 E-value=0.00017 Score=63.53 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=34.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.|++|||||+.||+.|++|.=+-|. .+|.|+|+...++-
T Consensus 49 ~D~VvvGgGiVGlAsARel~lrhp~--l~V~vleke~~la~ 87 (453)
T KOG2665|consen 49 YDLVVVGGGIVGLASARELSLRHPS--LKVAVLEKEKSLAV 87 (453)
T ss_pred ccEEEECCceeehhhhHHHhhcCCC--ceEEeeehhhhhce
Confidence 4899999999999999999988553 99999999988863
No 283
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.75 E-value=0.00026 Score=68.11 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=65.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||++|+-+|..|++.| .+|+++++++++.+. .+ .+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g----~~Vtli~~~~~~l~~-------------------~~--~~------------- 191 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLG----KNVRIIQLEDRILPD-------------------SF--DK------------- 191 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC----CcEEEEeCCcccCch-------------------hc--CH-------------
Confidence 47999999999999999999997 899999886543100 00 00
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
.+...+...+++.| ++++++++|.+++.++ +...+.+. +.++.||.
T Consensus 192 ------------------------------~~~~~l~~~l~~~g-I~v~~~~~v~~i~~~~--~~~~v~~~-~~~i~~d~ 237 (444)
T PRK09564 192 ------------------------------EITDVMEEELRENG-VELHLNEFVKSLIGED--KVEGVVTD-KGEYEADV 237 (444)
T ss_pred ------------------------------HHHHHHHHHHHHCC-CEEEcCCEEEEEecCC--cEEEEEeC-CCEEEcCE
Confidence 01122222333457 9999999999996543 33445554 44799999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 238 vi~a~G~ 244 (444)
T PRK09564 238 VIVATGV 244 (444)
T ss_pred EEECcCC
Confidence 9999874
No 284
>KOG2960|consensus
Probab=97.74 E-value=7.2e-06 Score=67.90 Aligned_cols=40 Identities=25% Similarity=0.552 Sum_probs=37.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+|-+||++||..+++.|+ .+|.|+|++-.+||.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPd--lkvaIIE~SVaPGGG 116 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPD--LKVAIIESSVAPGGG 116 (328)
T ss_pred cceEEECCCccccceeeeeeccCCC--ceEEEEEeeecCCCc
Confidence 4899999999999999999998888 999999999888875
No 285
>KOG0399|consensus
Probab=97.72 E-value=3e-05 Score=78.38 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=37.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcccee
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t 46 (365)
++|+|||+|+|||+||-+|.+.| +.|+|+|+++++||-+..
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~g----h~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAG----HTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcC----cEEEEEEecCCcCceeee
Confidence 47999999999999999999998 999999999999987544
No 286
>KOG1298|consensus
Probab=97.72 E-value=3.2e-05 Score=69.87 Aligned_cols=32 Identities=22% Similarity=0.488 Sum_probs=30.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
.||+|||||++|.++|+.|++.| -+|+|+||.
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdG----RrVhVIERD 77 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDG----RRVHVIERD 77 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCC----cEEEEEecc
Confidence 48999999999999999999998 999999995
No 287
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.71 E-value=4.5e-05 Score=70.98 Aligned_cols=39 Identities=33% Similarity=0.478 Sum_probs=35.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~ 44 (365)
++|+|||||++|+++|..|++.| .+|+|+|+.+.+||.+
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g----~~v~lie~~~~~gg~~ 57 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLG----YEVHVYDKLPEPGGLM 57 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC----CcEEEEeCCCCCCcee
Confidence 48999999999999999999997 9999999998888753
No 288
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.70 E-value=0.00041 Score=66.69 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=68.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||..|+-+|..|++.| .+|+|+|+++.+..+ . .+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g----~~Vtli~~~~~~l~~-------------~---------~~~~----------- 201 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFG----SKVTILEAASLFLPR-------------E---------DRDI----------- 201 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC----CeEEEEecCCCCCCC-------------c---------CHHH-----------
Confidence 47999999999999999999997 999999987543200 0 0000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
...+.+.|. +.| ++++++++|.+++.++ +.+.+.+.++ ++.+|.
T Consensus 202 -------------------------------~~~l~~~l~-~~g-V~v~~~~~v~~i~~~~--~~v~v~~~~g-~i~~D~ 245 (441)
T PRK08010 202 -------------------------------ADNIATILR-DQG-VDIILNAHVERISHHE--NQVQVHSEHA-QLAVDA 245 (441)
T ss_pred -------------------------------HHHHHHHHH-hCC-CEEEeCCEEEEEEEcC--CEEEEEEcCC-eEEeCE
Confidence 012333343 447 9999999999998766 6677766555 588999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 246 vl~a~G~ 252 (441)
T PRK08010 246 LLIASGR 252 (441)
T ss_pred EEEeecC
Confidence 9999763
No 289
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.70 E-value=4.2e-05 Score=67.73 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=29.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
.||+|||||+||++||.+|+++| .++.|+-.+
T Consensus 3 fDv~IIGGGLAGltc~l~l~~~G----k~c~iv~~g 34 (421)
T COG3075 3 FDVAIIGGGLAGLTCGLALQQAG----KRCAIVNRG 34 (421)
T ss_pred ccEEEEcCcHHHHHHHHHHHhcC----CcEEEEeCC
Confidence 49999999999999999999998 899998764
No 290
>PRK14694 putative mercuric reductase; Provisional
Probab=97.69 E-value=0.00044 Score=66.99 Aligned_cols=93 Identities=11% Similarity=0.167 Sum_probs=66.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||++|+-+|..|++.| .+|+|+++...+. .. .++..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g----~~Vtlv~~~~~l~------~~-----------------~~~~~---------- 221 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLG----SRVTVLARSRVLS------QE-----------------DPAVG---------- 221 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CeEEEEECCCCCC------CC-----------------CHHHH----------
Confidence 47999999999999999999998 8999998642110 00 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
..+.+.+. +.| ++++++++|.+++.++ +.+.+.+.++ ++.+|.
T Consensus 222 --------------------------------~~l~~~l~-~~G-I~v~~~~~v~~i~~~~--~~~~v~~~~~-~i~~D~ 264 (468)
T PRK14694 222 --------------------------------EAIEAAFR-REG-IEVLKQTQASEVDYNG--REFILETNAG-TLRAEQ 264 (468)
T ss_pred --------------------------------HHHHHHHH-hCC-CEEEeCCEEEEEEEcC--CEEEEEECCC-EEEeCE
Confidence 12233333 347 9999999999998766 6566666544 699999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 265 vi~a~G~ 271 (468)
T PRK14694 265 LLVATGR 271 (468)
T ss_pred EEEccCC
Confidence 9999864
No 291
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.67 E-value=0.00023 Score=66.31 Aligned_cols=48 Identities=25% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCC-eeecCEEEEcCCh
Q psy12489 114 SSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGK-KGIFDIVVLSMPA 168 (365)
Q Consensus 114 ~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~-~~~~d~vV~a~p~ 168 (365)
...++...++.| ++++++++|++|+.++ |++.+|. ++.++.+|=|++.
T Consensus 212 ~~~a~~~L~~~G-V~v~l~~~Vt~v~~~~------v~~~~g~~~I~~~tvvWaaGv 260 (405)
T COG1252 212 SKYAERALEKLG-VEVLLGTPVTEVTPDG------VTLKDGEEEIPADTVVWAAGV 260 (405)
T ss_pred HHHHHHHHHHCC-CEEEcCCceEEECCCc------EEEccCCeeEecCEEEEcCCC
Confidence 456666666779 9999999999997754 5566666 5999999999874
No 292
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.67 E-value=0.00043 Score=67.52 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=68.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|++++ .+. + .. .++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G----~~Vtli~~~-~~l-~----~~-----------------d~~~----------- 224 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELG----FDVTVAVRS-IPL-R----GF-----------------DRQC----------- 224 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CcEEEEEcC-ccc-c----cC-----------------CHHH-----------
Confidence 47999999999999999999998 899999863 221 0 00 0000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
...+.+.|. +.| +++++++.+.+++..+ +.+.+.+.+|+++.+|.
T Consensus 225 -------------------------------~~~l~~~l~-~~G-V~i~~~~~v~~v~~~~--~~~~v~~~~g~~i~~D~ 269 (499)
T PTZ00052 225 -------------------------------SEKVVEYMK-EQG-TLFLEGVVPINIEKMD--DKIKVLFSDGTTELFDT 269 (499)
T ss_pred -------------------------------HHHHHHHHH-HcC-CEEEcCCeEEEEEEcC--CeEEEEECCCCEEEcCE
Confidence 012333343 447 9999999999998766 55667777788889999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||++++.
T Consensus 270 vl~a~G~ 276 (499)
T PTZ00052 270 VLYATGR 276 (499)
T ss_pred EEEeeCC
Confidence 9999874
No 293
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.66 E-value=0.0013 Score=62.26 Aligned_cols=47 Identities=32% Similarity=0.412 Sum_probs=40.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeec
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSR 48 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~ 48 (365)
++.=|||+|+|+|++|..|-|-+.=.|-+|+|||+.+.+||.+.+..
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g 49 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG 49 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence 45779999999999999999887645789999999999999876554
No 294
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.66 E-value=5.4e-05 Score=73.67 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=34.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||+|++|+++|+.|+++| ++|+|+|++...||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g----~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAG----LKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCC----CeEEEEeccCccCC
Confidence 48999999999999999999998 99999999887764
No 295
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.65 E-value=5e-05 Score=74.89 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=34.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+| +|+++|..++++| .+|+|+||.+.+||.
T Consensus 17 ~DvvvvG~G-~G~~aA~~a~~~G----~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 17 VDLLVVGSG-TGMAAALAAHELG----LSVLIVEKSSYVGGS 53 (564)
T ss_pred eCEEEECCc-HHHHHHHHHHHCC----CcEEEEecCCCCcCc
Confidence 499999999 8999999999998 999999999989985
No 296
>PRK14727 putative mercuric reductase; Provisional
Probab=97.64 E-value=0.0005 Score=66.79 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=67.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+++...+. . + .+...
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G----~~Vtlv~~~~~l~------~--------~---------d~~~~---------- 231 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLG----SRVTILARSTLLF------R--------E---------DPLLG---------- 231 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CEEEEEEcCCCCC------c--------c---------hHHHH----------
Confidence 47999999999999999999997 8999998742110 0 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
..+.+.|. +.| ++++++++|++++.++ +.+.+.+.++ ++.+|.
T Consensus 232 --------------------------------~~l~~~L~-~~G-V~i~~~~~V~~i~~~~--~~~~v~~~~g-~i~aD~ 274 (479)
T PRK14727 232 --------------------------------ETLTACFE-KEG-IEVLNNTQASLVEHDD--NGFVLTTGHG-ELRAEK 274 (479)
T ss_pred --------------------------------HHHHHHHH-hCC-CEEEcCcEEEEEEEeC--CEEEEEEcCC-eEEeCE
Confidence 12233333 347 9999999999998766 6677776655 588999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 275 VlvA~G~ 281 (479)
T PRK14727 275 LLISTGR 281 (479)
T ss_pred EEEccCC
Confidence 9999874
No 297
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.64 E-value=5.8e-05 Score=72.87 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=32.8
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
+|+|||||++|+++|..|++.| .+|+|+|+.. .||.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g----~~V~lie~~~-~GG~ 37 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNG----KNVTLIDEAD-LGGT 37 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCC----CcEEEEECCc-cccc
Confidence 7999999999999999999998 9999999964 6654
No 298
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.64 E-value=0.00037 Score=66.88 Aligned_cols=91 Identities=23% Similarity=0.272 Sum_probs=65.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.+|+|||||.+|+-+|..|++.| .+|+|+|+++++... + .++..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g----~~Vtli~~~~~l~~~-------------~---------d~~~~---------- 192 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERG----LHPTLIHRSDKINKL-------------M---------DADMN---------- 192 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC----CcEEEEecccccchh-------------c---------CHHHH----------
Confidence 47999999999999999999998 899999997654210 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
..+.+.|. +.| ++++++++|++++. . .+.+.+|+++.+|.
T Consensus 193 --------------------------------~~l~~~l~-~~g-I~i~~~~~v~~i~~----~--~v~~~~g~~~~~D~ 232 (438)
T PRK13512 193 --------------------------------QPILDELD-KRE-IPYRLNEEIDAING----N--EVTFKSGKVEHYDM 232 (438)
T ss_pred --------------------------------HHHHHHHH-hcC-CEEEECCeEEEEeC----C--EEEECCCCEEEeCE
Confidence 12233333 447 99999999999953 3 34556677899999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 233 vl~a~G~ 239 (438)
T PRK13512 233 IIEGVGT 239 (438)
T ss_pred EEECcCC
Confidence 9999874
No 299
>PRK13984 putative oxidoreductase; Provisional
Probab=97.62 E-value=7.1e-05 Score=74.88 Aligned_cols=40 Identities=38% Similarity=0.595 Sum_probs=36.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccce
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT 45 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~ 45 (365)
++|+|||+|++|+++|..|+++| ++|+|||+.+.+||...
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G----~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMG----YEVTVYESLSKPGGVMR 323 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC----CeEEEEecCCCCCceEe
Confidence 57999999999999999999998 99999999999987643
No 300
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.60 E-value=6.9e-05 Score=71.35 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=35.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.|++|||||++|..+|.++++.| .+|.|+|+...+||.
T Consensus 5 yDvvVIG~GpaG~~aA~raa~~G----~kvalvE~~~~lGGt 42 (454)
T COG1249 5 YDVVVIGAGPAGYVAAIRAAQLG----LKVALVEKGERLGGT 42 (454)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC----CCEEEEeecCCcCce
Confidence 69999999999999999999998 789999998778864
No 301
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.60 E-value=7e-05 Score=70.88 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=31.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.||+|||||++|+++|+.|+++| .+|+|+|++.
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g----~~v~vi~~~~ 35 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAG----KRVALVAKGQ 35 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCC----CcEEEEECCC
Confidence 59999999999999999999998 9999999864
No 302
>PRK13748 putative mercuric reductase; Provisional
Probab=97.60 E-value=0.0006 Score=67.71 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=66.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+++...+. . + .++..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g----~~Vtli~~~~~l~------~--------~---------d~~~~---------- 313 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLG----SKVTILARSTLFF------R--------E---------DPAIG---------- 313 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CEEEEEecCcccc------c--------c---------CHHHH----------
Confidence 47999999999999999999998 8999999742110 0 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
..+.+.|. +.| ++++++++|++++..+ +.+.+.+.++ ++.+|.
T Consensus 314 --------------------------------~~l~~~l~-~~g-I~i~~~~~v~~i~~~~--~~~~v~~~~~-~i~~D~ 356 (561)
T PRK13748 314 --------------------------------EAVTAAFR-AEG-IEVLEHTQASQVAHVD--GEFVLTTGHG-ELRADK 356 (561)
T ss_pred --------------------------------HHHHHHHH-HCC-CEEEcCCEEEEEEecC--CEEEEEecCC-eEEeCE
Confidence 12233333 347 9999999999998766 6666766555 689999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||+|++.
T Consensus 357 vi~a~G~ 363 (561)
T PRK13748 357 LLVATGR 363 (561)
T ss_pred EEEccCC
Confidence 9999874
No 303
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.59 E-value=7.3e-05 Score=74.18 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=30.2
Q ss_pred cEEEEccCHHHHHHHHHHH----HhcCCCceeEEEEecCCC
Q psy12489 3 KVLIVGSGITSALTSYLLR----QKLLTDLIHITIWDKARG 39 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~----~~g~~~~~~v~v~E~~~~ 39 (365)
||+|||||+|||+||..++ ++| .+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G----~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKG----LKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCC----CeEEEEEccCC
Confidence 8999999999999999998 666 99999999764
No 304
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.59 E-value=0.00076 Score=65.44 Aligned_cols=94 Identities=18% Similarity=0.155 Sum_probs=66.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHh---cCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQK---LLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIY 78 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~---g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~ 78 (365)
++|+|||||..|+-+|..++.. | .+|+|+|+.+++... . | ++.
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G----~~Vtli~~~~~il~~-----~--------d---------~~~-------- 233 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRG----GKVTLCYRNNMILRG-----F--------D---------STL-------- 233 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCC----CeEEEEecCCccccc-----c--------C---------HHH--------
Confidence 4799999999999999766544 6 899999987654200 0 0 000
Q ss_pred hhhhhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCc-EEEEecCCCee
Q psy12489 79 QPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQ-IEVTSKEGKKG 157 (365)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~-~~v~~~~g~~~ 157 (365)
...+.+.|. +.| +++++++.|++++..+ ++ ..+.+.+|+++
T Consensus 234 ----------------------------------~~~l~~~L~-~~G-I~i~~~~~v~~i~~~~--~~~~~v~~~~g~~i 275 (486)
T TIGR01423 234 ----------------------------------RKELTKQLR-ANG-INIMTNENPAKVTLNA--DGSKHVTFESGKTL 275 (486)
T ss_pred ----------------------------------HHHHHHHHH-HcC-CEEEcCCEEEEEEEcC--CceEEEEEcCCCEE
Confidence 013334444 347 9999999999998764 33 55666677789
Q ss_pred ecCEEEEcCC
Q psy12489 158 IFDIVVLSMP 167 (365)
Q Consensus 158 ~~d~vV~a~p 167 (365)
.+|.||+|++
T Consensus 276 ~~D~vl~a~G 285 (486)
T TIGR01423 276 DVDVVMMAIG 285 (486)
T ss_pred EcCEEEEeeC
Confidence 9999999986
No 305
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.56 E-value=8.1e-05 Score=73.21 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=32.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||+|+|||+||+.+++. .+|+|+||....||
T Consensus 9 ~DVlVVG~G~AGl~AA~~aa~~-----~~VilveK~~~~~g 44 (536)
T PRK09077 9 CDVLIIGSGAAGLSLALRLAEH-----RRVAVLSKGPLSEG 44 (536)
T ss_pred CCEEEECchHHHHHHHHHHHHC-----CCEEEEeccCCCCC
Confidence 4999999999999999999885 69999999877665
No 306
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.55 E-value=0.00048 Score=63.06 Aligned_cols=143 Identities=10% Similarity=0.111 Sum_probs=85.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCC-CCCeeeecc--cceeec-ChhcchhHHHh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNV-VPNCKVDLG--LQYITT-TPDFLSNHTDI 77 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~-~~~~~~d~g--~~~~~~-~~~~~~~~~~~ 77 (365)
.|++.||-|++-|++|..|.+.+ +.+++.||+....-.. .+. -++..++.. ....+. +|.- -..+
T Consensus 6 ~DliGIG~GPfNL~LA~ll~e~~---~~~~lFLerkp~F~WH-----pGmllegstlQv~FlkDLVTl~~PTs---~ySF 74 (436)
T COG3486 6 LDLIGIGIGPFNLSLAALLEEHS---GLKSLFLERKPDFSWH-----PGMLLEGSTLQVPFLKDLVTLVDPTS---PYSF 74 (436)
T ss_pred eeeEEEccCchHHHHHHHhcccc---CcceEEEecCCCCCcC-----CCcccCCccccccchhhhccccCCCC---chHH
Confidence 39999999999999999999987 5889999997654210 000 001111111 111111 1110 0134
Q ss_pred hhhhhhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEE--EEecCCC
Q psy12489 78 YQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIE--VTSKEGK 155 (365)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~--v~~~~g~ 155 (365)
++-|...+.+..|.. .+..++++..++.+++-.+..+ -.++++++|+.|...+...... +.+.+++
T Consensus 75 LNYL~~h~RLy~Fl~----------~e~f~i~R~Ey~dY~~Waa~~l--~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~ 142 (436)
T COG3486 75 LNYLHEHGRLYEFLN----------YETFHIPRREYNDYCQWAASQL--PSLRFGEEVTDISSLDGDAVVRLFVVTANGT 142 (436)
T ss_pred HHHHHHcchHhhhhh----------hhcccccHHHHHHHHHHHHhhC--CccccCCeeccccccCCcceeEEEEEcCCCc
Confidence 444555554433321 1223455667788999777765 4899999999773332112233 5666777
Q ss_pred eeecCEEEEcCC
Q psy12489 156 KGIFDIVVLSMP 167 (365)
Q Consensus 156 ~~~~d~vV~a~p 167 (365)
.++|+.||+.++
T Consensus 143 ~y~ar~lVlg~G 154 (436)
T COG3486 143 VYRARNLVLGVG 154 (436)
T ss_pred EEEeeeEEEccC
Confidence 899999999975
No 307
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.52 E-value=0.00091 Score=64.98 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=65.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.+|+|||||.+|+-+|..|++.| .+|+|+++. .+.. .. .+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G----~~Vtli~~~-~~l~-----~~-----------------d~~~~---------- 223 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIG----LDVTVMVRS-ILLR-----GF-----------------DQDCA---------- 223 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhC----CcEEEEEec-cccc-----cc-----------------CHHHH----------
Confidence 37999999999999999999998 899999863 2210 00 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCC---Ceee
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEG---KKGI 158 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g---~~~~ 158 (365)
..+.+.|. +.| +++++++.+.+++..+ +.+.+...++ +++.
T Consensus 224 --------------------------------~~l~~~L~-~~g-V~i~~~~~v~~v~~~~--~~~~v~~~~~~~~~~i~ 267 (484)
T TIGR01438 224 --------------------------------NKVGEHME-EHG-VKFKRQFVPIKVEQIE--AKVKVTFTDSTNGIEEE 267 (484)
T ss_pred --------------------------------HHHHHHHH-HcC-CEEEeCceEEEEEEcC--CeEEEEEecCCcceEEE
Confidence 12333343 347 9999999999998766 5555655444 3689
Q ss_pred cCEEEEcCCh
Q psy12489 159 FDIVVLSMPA 168 (365)
Q Consensus 159 ~d~vV~a~p~ 168 (365)
+|.||+|++.
T Consensus 268 ~D~vl~a~G~ 277 (484)
T TIGR01438 268 YDTVLLAIGR 277 (484)
T ss_pred eCEEEEEecC
Confidence 9999999873
No 308
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.51 E-value=0.00012 Score=70.88 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=30.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHh-cCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQK-LLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~-g~~~~~~v~v~E~~ 37 (365)
.||+|||||++|..+|..++++ | .+|+|+|+.
T Consensus 4 ~DviVIG~G~~G~~aA~~aa~~~g----~~V~lie~~ 36 (486)
T TIGR01423 4 FDLVVIGAGSGGLEAGWNAATLYK----KRVAVIDVQ 36 (486)
T ss_pred cCEEEECCChHHHHHHHHHHHhcC----CEEEEEecc
Confidence 5999999999999999999997 6 999999984
No 309
>PLN02546 glutathione reductase
Probab=97.50 E-value=0.00012 Score=71.88 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=29.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEec
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDK 36 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~ 36 (365)
.||+|||||++|..+|..|+++| .+|+|+|+
T Consensus 80 yDvvVIG~GpaG~~aA~~aa~~G----~~V~liE~ 110 (558)
T PLN02546 80 FDLFTIGAGSGGVRASRFASNFG----ASAAVCEL 110 (558)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CeEEEEec
Confidence 48999999999999999999998 99999996
No 310
>PRK02106 choline dehydrogenase; Validated
Probab=97.49 E-value=0.0001 Score=72.99 Aligned_cols=33 Identities=12% Similarity=0.291 Sum_probs=30.8
Q ss_pred CcEEEEccCHHHHHHHHHHHH-hcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQ-KLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~-~g~~~~~~v~v~E~~~ 38 (365)
.|++|||||.+|+.+|.+|++ .| .+|+|||++.
T Consensus 6 ~D~iIVG~G~aG~vvA~rLae~~g----~~VlvlEaG~ 39 (560)
T PRK02106 6 YDYIIIGAGSAGCVLANRLSEDPD----VSVLLLEAGG 39 (560)
T ss_pred CcEEEECCcHHHHHHHHHHHhCCC----CeEEEecCCC
Confidence 499999999999999999999 66 9999999985
No 311
>PTZ00058 glutathione reductase; Provisional
Probab=97.49 E-value=0.0012 Score=64.96 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=67.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||..|+-+|..|++.| .+|+|+|+++++... . .++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G----~~Vtli~~~~~il~~-----~-----------------d~~i----------- 280 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLG----AESYIFARGNRLLRK-----F-----------------DETI----------- 280 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC----CcEEEEEeccccccc-----C-----------------CHHH-----------
Confidence 47999999999999999999998 899999987643200 0 0000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCC-CeeecC
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEG-KKGIFD 160 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g-~~~~~d 160 (365)
...+.+.|.+ .| +++++++.|.+|+..+. +++.+...++ +++.+|
T Consensus 281 -------------------------------~~~l~~~L~~-~G-V~i~~~~~V~~I~~~~~-~~v~v~~~~~~~~i~aD 326 (561)
T PTZ00058 281 -------------------------------INELENDMKK-NN-INIITHANVEEIEKVKE-KNLTIYLSDGRKYEHFD 326 (561)
T ss_pred -------------------------------HHHHHHHHHH-CC-CEEEeCCEEEEEEecCC-CcEEEEECCCCEEEECC
Confidence 0123333433 47 99999999999986541 2455544344 468999
Q ss_pred EEEEcCCh
Q psy12489 161 IVVLSMPA 168 (365)
Q Consensus 161 ~vV~a~p~ 168 (365)
.||+|++.
T Consensus 327 ~VlvA~Gr 334 (561)
T PTZ00058 327 YVIYCVGR 334 (561)
T ss_pred EEEECcCC
Confidence 99999863
No 312
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.48 E-value=0.00014 Score=64.58 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=34.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC--CCCCccc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA--RGPGGRM 44 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~--~~~ggr~ 44 (365)
.||+|||||++||.+|.+|+.+| .+|+|+|+. ..+||.+
T Consensus 6 ~dvivvgaglaglvaa~elA~aG----~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 6 ADVIVVGAGLAGLVAAAELADAG----KRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccEEEECccHHHHHHHHHHHhcC----ceEEEEccccccccccee
Confidence 48999999999999999999998 999999875 4567653
No 313
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.48 E-value=0.00047 Score=64.12 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=38.7
Q ss_pred CChHHHHHHHHh---hCCCceEEEeeeeEEeeecCCCCcEEEEecCC-CeeecCEEEEcCCh
Q psy12489 111 QGSSSIVKYFLN---KSNIDEICYNTFLETMAKTDSTNQIEVTSKEG-KKGIFDIVVLSMPA 168 (365)
Q Consensus 111 ~g~~~l~~~l~~---~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g-~~~~~d~vV~a~p~ 168 (365)
..-.++++.|.. +.| ++|+++++|++| .+ +++.+.+.++ .++.||+||+|++.
T Consensus 83 ~~A~sVv~~L~~~l~~~g-V~i~~~~~V~~i--~~--~~~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQG-VQFHTRHRWIGW--QG--GTLRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred CCHHHHHHHHHHHHHHCC-CEEEeCCEEEEE--eC--CcEEEEECCCceEEecCEEEEcCCC
Confidence 344555555543 457 999999999999 33 4577776543 46899999999975
No 314
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.45 E-value=0.00015 Score=71.03 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=34.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~gg 42 (365)
.||+|||||.|||.+|..++++| ++|+|+||....+|
T Consensus 7 ~DvvVIG~G~AGl~AAi~aa~~g----~~V~l~~K~~~~rg 43 (562)
T COG1053 7 FDVVVIGGGGAGLRAAIEAAEAG----LKVALLSKAPPKRG 43 (562)
T ss_pred CCEEEECCcHHHHHHHHHHHhcC----CcEEEEEccccCCC
Confidence 59999999999999999999998 99999999876654
No 315
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.41 E-value=0.0013 Score=62.86 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=31.4
Q ss_pred hhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCC
Q psy12489 122 NKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMP 167 (365)
Q Consensus 122 ~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p 167 (365)
++.| ++++++++|.+++. +. +.+.+|+++.+|.||.+++
T Consensus 239 ~~~g-V~v~~~~~v~~v~~----~~--v~~~~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 239 RRLG-VDIRTKTAVKEVLD----KE--VVLKDGEVIPTGLVVWSTG 277 (424)
T ss_pred HHCC-CEEEeCCeEEEEeC----CE--EEECCCCEEEccEEEEccC
Confidence 3458 99999999999963 32 4567888899999999976
No 316
>KOG2852|consensus
Probab=97.40 E-value=5.9e-05 Score=65.61 Aligned_cols=41 Identities=37% Similarity=0.586 Sum_probs=33.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCC--CceeEEEEecCCCCCc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLT--DLIHITIWDKARGPGG 42 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~--~~~~v~v~E~~~~~gg 42 (365)
++|+|||||+.|+++||.|++.+.- .-++|+|||.....||
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 5799999999999999999998521 1278999999876654
No 317
>KOG1800|consensus
Probab=97.39 E-value=0.00022 Score=64.43 Aligned_cols=46 Identities=28% Similarity=0.345 Sum_probs=38.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRS 49 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~ 49 (365)
+.|+|||+|+||..+|+.|.++-++ ++|.|+|+...+.|-.+..-.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~--~~Vdi~Ek~PvPFGLvRyGVA 66 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPN--AHVDIFEKLPVPFGLVRYGVA 66 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCC--CeeEeeecCCcccceeeeccC
Confidence 4799999999999999999987443 899999999999887655443
No 318
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.39 E-value=0.0002 Score=69.58 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
.||+|||||++|+.+|+.+++.| .+|+|+|+.
T Consensus 3 yDvvVIG~G~aG~~aA~~aa~~G----~~v~lie~~ 34 (484)
T TIGR01438 3 YDLIVIGGGSGGLAAAKEAADYG----AKVMLLDFV 34 (484)
T ss_pred cCEEEECCCHHHHHHHHHHHHCC----CeEEEEecc
Confidence 59999999999999999999998 999999974
No 319
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.38 E-value=0.00014 Score=71.52 Aligned_cols=34 Identities=12% Similarity=0.273 Sum_probs=30.9
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
|++|||||.+|+.+|.+|++.+ ..+|+|||++..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~---~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDV---SNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCC---CCeEEEEecCCC
Confidence 8999999999999999999986 369999999853
No 320
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.37 E-value=0.0016 Score=63.18 Aligned_cols=94 Identities=15% Similarity=0.189 Sum_probs=66.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||..|+-+|..|++.| .+|+|+|+.+++... + .+++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G----~~Vtlv~~~~~il~~-------------~---------d~~~~---------- 218 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLG----SEVDVVEMFDQVIPA-------------A---------DKDIV---------- 218 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CCEEEEecCCCCCCc-------------C---------CHHHH----------
Confidence 47999999999999999999998 899999998654200 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecC--C--Cee
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKE--G--KKG 157 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~--g--~~~ 157 (365)
..+.+.|.+ . ++++++++|++++..+ +++.+.+.+ + +++
T Consensus 219 --------------------------------~~~~~~l~~--~-v~i~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~i 261 (471)
T PRK06467 219 --------------------------------KVFTKRIKK--Q-FNIMLETKVTAVEAKE--DGIYVTMEGKKAPAEPQ 261 (471)
T ss_pred --------------------------------HHHHHHHhh--c-eEEEcCCEEEEEEEcC--CEEEEEEEeCCCcceEE
Confidence 122233333 3 6788999999998766 666665433 2 358
Q ss_pred ecCEEEEcCCh
Q psy12489 158 IFDIVVLSMPA 168 (365)
Q Consensus 158 ~~d~vV~a~p~ 168 (365)
.+|.||+|++.
T Consensus 262 ~~D~vi~a~G~ 272 (471)
T PRK06467 262 RYDAVLVAVGR 272 (471)
T ss_pred EeCEEEEeecc
Confidence 99999999874
No 321
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.37 E-value=0.0014 Score=65.66 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=32.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+.+++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G----~eVTLIe~~~~l 347 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALG----SEVVSFEYSPQL 347 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCC----CeEEEEeccCcc
Confidence 47999999999999999999998 899999998765
No 322
>KOG3855|consensus
Probab=97.37 E-value=0.016 Score=53.33 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=31.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.||+|||||+.|+++|..|...-+-+-.+|.++|.++
T Consensus 37 ~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 37 YDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred CCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 4899999999999999999855443457899999984
No 323
>PLN02546 glutathione reductase
Probab=97.35 E-value=0.002 Score=63.50 Aligned_cols=96 Identities=10% Similarity=0.130 Sum_probs=66.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||..|+-+|..|++.| .+|+|+|+.+++... . .++.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g----~~Vtlv~~~~~il~~-----~-----------------d~~~----------- 295 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLK----SDVHVFIRQKKVLRG-----F-----------------DEEV----------- 295 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC----CeEEEEEeccccccc-----c-----------------CHHH-----------
Confidence 47999999999999999999997 899999987644200 0 0000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
...+.+.|. +.| +++++++.|.+++..++ +.+.+.+.+++...+|.
T Consensus 296 -------------------------------~~~l~~~L~-~~G-V~i~~~~~v~~i~~~~~-g~v~v~~~~g~~~~~D~ 341 (558)
T PLN02546 296 -------------------------------RDFVAEQMS-LRG-IEFHTEESPQAIIKSAD-GSLSLKTNKGTVEGFSH 341 (558)
T ss_pred -------------------------------HHHHHHHHH-HCC-cEEEeCCEEEEEEEcCC-CEEEEEECCeEEEecCE
Confidence 012223333 447 99999999999976541 33556555554455899
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
||++++.
T Consensus 342 Viva~G~ 348 (558)
T PLN02546 342 VMFATGR 348 (558)
T ss_pred EEEeecc
Confidence 9999873
No 324
>KOG2853|consensus
Probab=97.34 E-value=0.00018 Score=64.09 Aligned_cols=39 Identities=15% Similarity=0.362 Sum_probs=33.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
.||+|||||.+|+++|+.|+++-..-|++|+|+|+.+..
T Consensus 87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 389999999999999999998755446999999998754
No 325
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.33 E-value=0.00024 Score=71.02 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=33.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC-CCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA-RGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~-~~~ggr 43 (365)
.||+|||||++|..+|..+++.| .+|+|+|+. ..+||.
T Consensus 117 yDviVIG~G~gG~~aA~~aa~~G----~kV~lie~~~~~lGGt 155 (659)
T PTZ00153 117 YDVGIIGCGVGGHAAAINAMERG----LKVIIFTGDDDSIGGT 155 (659)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC----CcEEEEeCCCCccccc
Confidence 48999999999999999999998 999999975 357764
No 326
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.31 E-value=0.00088 Score=61.85 Aligned_cols=133 Identities=19% Similarity=0.230 Sum_probs=67.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.++.-++..|.++++. .+|+++=++...- ..+. ..+.-.+|. |++. +.+..+
T Consensus 191 ~~V~VVGgGQSAAEi~~~L~~~~~~--~~V~~i~R~~~~~------~~d~-----s~f~ne~f~--P~~v----~~f~~l 251 (341)
T PF13434_consen 191 KRVAVVGGGQSAAEIFLDLLRRGPE--AKVTWISRSPGFF------PMDD-----SPFVNEIFS--PEYV----DYFYSL 251 (341)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHH-TT--EEEEEEESSSS-E------B---------CCHHGGGS--HHHH----HHHHTS
T ss_pred CeEEEECCcHhHHHHHHHHHhCCCC--cEEEEEECCCccC------CCcc-----ccchhhhcC--chhh----hhhhcC
Confidence 4799999999999999999999854 7899988865331 1110 011112232 2222 111111
Q ss_pred hh---cCcccccc-cccccccccCCCcceEEcCCChHHHHHHH-----HhhCCCceEEEeeeeEEeeecCCCC-cEEEEe
Q psy12489 82 LD---EKLLEPFT-ANIIGYKSRKKNVTHYVTPQGSSSIVKYF-----LNKSNIDEICYNTFLETMAKTDSTN-QIEVTS 151 (365)
Q Consensus 82 ~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~l~~~l-----~~~~g~~~i~~~~~V~~i~~~~~~~-~~~v~~ 151 (365)
.. ..++..-. ....+ ....-+.++.+.+ ..+.. ..|+.+++|++++..+ + +|.+++
T Consensus 252 ~~~~R~~~l~~~~~~ny~~-----------i~~~~l~~iy~~lY~~~v~g~~~-~~l~~~~~v~~~~~~~--~~~~~l~~ 317 (341)
T PF13434_consen 252 PDEERRELLREQRHTNYGG-----------IDPDLLEAIYDRLYEQRVSGRGR-LRLLPNTEVTSAEQDG--DGGVRLTL 317 (341)
T ss_dssp -HHHHHHHHHHTGGGTSSE-----------B-HHHHHHHHHHHHHHHHHT----SEEETTEEEEEEEEES---SSEEEEE
T ss_pred CHHHHHHHHHHhHhhcCCC-----------CCHHHHHHHHHHHHHHHhcCCCC-eEEeCCCEEEEEEECC--CCEEEEEE
Confidence 10 00000000 00000 0111223343333 22223 7889999999999887 5 788887
Q ss_pred cCC-----CeeecCEEEEcCC
Q psy12489 152 KEG-----KKGIFDIVVLSMP 167 (365)
Q Consensus 152 ~~g-----~~~~~d~vV~a~p 167 (365)
.+. .+..+|.||+||+
T Consensus 318 ~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 318 RHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EETTT--EEEEEESEEEE---
T ss_pred EECCCCCeEEEecCEEEEcCC
Confidence 652 3578999999987
No 327
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.31 E-value=0.002 Score=60.95 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=33.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeec
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSR 48 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~ 48 (365)
.||+|+|.|+.-+.+|-.|++.| .+|+.+|+++.-||..++..
T Consensus 5 yDviI~GTGl~esila~als~~G----kkVLhiD~n~yYGg~~asl~ 47 (438)
T PF00996_consen 5 YDVIILGTGLTESILAAALSRSG----KKVLHIDRNDYYGGEWASLN 47 (438)
T ss_dssp ESEEEE--SHHHHHHHHHHHHTT------EEEE-SSSSSCGGG-EE-
T ss_pred ceEEEECCCcHHHHHHHHHHhcC----CEEEecCCCCCcCCchhccc
Confidence 49999999999999999999998 99999999999999876654
No 328
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.29 E-value=0.00025 Score=74.04 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=31.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
.||+|||||.|||++|+.+++.| .+|+|+||...
T Consensus 14 ~DVlVVG~G~AGl~AAl~Aa~~G----~~V~lleK~~~ 47 (897)
T PRK13800 14 CDVLVIGGGTAGTMAALTAAEHG----ANVLLLEKAHV 47 (897)
T ss_pred cCEEEECcCHHHHHHHHHHHHCC----CeEEEEecccc
Confidence 49999999999999999999997 99999999864
No 329
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.27 E-value=0.0029 Score=61.18 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=65.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+++++... + .+++.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g----~~Vtli~~~~~~l~~-------------~---------d~~~~---------- 213 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLG----VKVTVFERGDRILPL-------------E---------DPEVS---------- 213 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CcEEEEecCCCcCcc-------------h---------hHHHH----------
Confidence 47999999999999999999998 899999997654210 0 00000
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCC-cEEEEecCC--Ceee
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTN-QIEVTSKEG--KKGI 158 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~-~~~v~~~~g--~~~~ 158 (365)
..+.+.|.+ . ++++++++|.+++.++ + .+.++..++ .++.
T Consensus 214 --------------------------------~~~~~~l~~--~-I~i~~~~~v~~i~~~~--~~~v~~~~~~~~~~~i~ 256 (460)
T PRK06292 214 --------------------------------KQAQKILSK--E-FKIKLGAKVTSVEKSG--DEKVEELEKGGKTETIE 256 (460)
T ss_pred --------------------------------HHHHHHHhh--c-cEEEcCCEEEEEEEcC--CceEEEEEcCCceEEEE
Confidence 122233333 3 7899999999998765 4 455543333 4689
Q ss_pred cCEEEEcCCh
Q psy12489 159 FDIVVLSMPA 168 (365)
Q Consensus 159 ~d~vV~a~p~ 168 (365)
+|.||++++.
T Consensus 257 ~D~vi~a~G~ 266 (460)
T PRK06292 257 ADYVLVATGR 266 (460)
T ss_pred eCEEEEccCC
Confidence 9999999863
No 330
>KOG0042|consensus
Probab=97.24 E-value=0.0034 Score=59.51 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=34.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||||.+|.-||.-.+-+| +++.++|+++-..|.
T Consensus 68 fDVLIIGGGAtGaGcALDA~TRG----LktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 68 FDVLIIGGGATGAGCALDAATRG----LKTALVEAGDFASGT 105 (680)
T ss_pred ccEEEECCCccCcceeehhhccc----ceeEEEecccccCCc
Confidence 49999999999999999999998 999999999866654
No 331
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.24 E-value=0.00035 Score=65.58 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=30.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.||+|||||++|+++|+.|.++| .+|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g----~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAG----KKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCC----CCEEEEeCCC
Confidence 48999999999999999999997 9999999875
No 332
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00052 Score=61.43 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=71.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.||+|||||++|.++|.+.++.| ++.=|+- .+.||.....- +.
T Consensus 212 yDVLvVGgGPAgaaAAiYaARKG----iRTGl~a--erfGGQvldT~-----------~I-------------------- 254 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARKG----IRTGLVA--ERFGGQVLDTM-----------GI-------------------- 254 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhhc----chhhhhh--hhhCCeecccc-----------ch--------------------
Confidence 58999999999999999999998 7665432 24665421100 00
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCC-CcEEEEecCCCeeecC
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDST-NQIEVTSKEGKKGIFD 160 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~-~~~~v~~~~g~~~~~d 160 (365)
.+++.- .+.--+.+..-++...+++. +++.-..+.++++..... +-..|++.+|-..+++
T Consensus 255 --ENfIsv----------------~~teGpkl~~ale~Hv~~Y~-vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkak 315 (520)
T COG3634 255 --ENFISV----------------PETEGPKLAAALEAHVKQYD-VDVMNLQRASKLEPAAVEGGLIEVELANGAVLKAR 315 (520)
T ss_pred --hheecc----------------ccccchHHHHHHHHHHhhcC-chhhhhhhhhcceecCCCCccEEEEecCCceeccc
Confidence 000000 00001123344444555666 777777777777764311 3478999999999999
Q ss_pred EEEEcCChh
Q psy12489 161 IVVLSMPAP 169 (365)
Q Consensus 161 ~vV~a~p~~ 169 (365)
.||++++..
T Consensus 316 tvIlstGAr 324 (520)
T COG3634 316 TVILATGAR 324 (520)
T ss_pred eEEEecCcc
Confidence 999999854
No 333
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00031 Score=69.00 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=30.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.|++|||+|.+|+.+|.+|++.| ++|+|||++.
T Consensus 8 ~D~vIVGsG~aG~~lA~rLs~~g----~~VllLEaG~ 40 (542)
T COG2303 8 YDYVIVGSGSAGSVLAARLSDAG----LSVLVLEAGG 40 (542)
T ss_pred CCEEEECCCchhHHHHHHhcCCC----CeEEEEeCCC
Confidence 59999999999999999999776 9999999984
No 334
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.18 E-value=0.0032 Score=61.80 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=29.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||||.+|+-+|..|++.| .+|+|+|+.+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g----~~Vtli~~~~ 385 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIV----RHVTVLEFAD 385 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcC----cEEEEEEeCC
Confidence 47999999999999999999987 8999998654
No 335
>KOG1335|consensus
Probab=97.06 E-value=0.00066 Score=61.57 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=36.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.||+|||+|+.|-.+|...+|.| ++..++|++..+||.
T Consensus 40 ~DvvvIG~GpGGyvAAikAaQlG----lkTacvEkr~~LGGT 77 (506)
T KOG1335|consen 40 YDVVVIGGGPGGYVAAIKAAQLG----LKTACVEKRGTLGGT 77 (506)
T ss_pred CCEEEECCCCchHHHHHHHHHhc----ceeEEEeccCccCce
Confidence 59999999999999999999998 999999999999985
No 336
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0038 Score=55.63 Aligned_cols=34 Identities=6% Similarity=0.371 Sum_probs=31.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
..|.|||||+||.-+||+++++| +.|.++|-+..
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~G----v~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRG----VPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcC----CcEEEEEcccc
Confidence 36999999999999999999998 99999998643
No 337
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=0.0011 Score=63.13 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=29.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
.||+|||||-||+-||...++.| .+++++--+
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG----~ktlLlT~~ 36 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMG----AKTLLLTLN 36 (621)
T ss_pred CceEEECCCccchHHHHhhhccC----CeEEEEEcC
Confidence 49999999999999999999998 999998764
No 338
>PLN02785 Protein HOTHEAD
Probab=96.94 E-value=0.00085 Score=66.49 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
.|++|||||.+|+.+|.+|++ + .+|+|||++..
T Consensus 56 yD~IIVG~G~aG~~lA~~Ls~-~----~~VLllE~G~~ 88 (587)
T PLN02785 56 YDYIVVGGGTAGCPLAATLSQ-N----FSVLLLERGGV 88 (587)
T ss_pred CCEEEECcCHHHHHHHHHHhc-C----CcEEEEecCCC
Confidence 599999999999999999999 4 89999999863
No 339
>PRK10262 thioredoxin reductase; Provisional
Probab=96.92 E-value=0.0086 Score=54.93 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||+|.+|+-+|..|++.+ .+|+++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~----~~Vtlv~~~~ 179 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIA----SEVHLIHRRD 179 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhC----CEEEEEEECC
Confidence 47999999999999999999997 8999999864
No 340
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.84 E-value=0.014 Score=52.79 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=29.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||+|.+|+-+|..|++.+ .+|+++++.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~----~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIA----KKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhc----CEEEEEEeCc
Confidence 47999999999999999999987 8999998853
No 341
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.76 E-value=0.016 Score=54.22 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=32.8
Q ss_pred HHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCCh
Q psy12489 120 FLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 120 l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~ 168 (365)
..++.+ ++++++++|.+++ + + .+.+.+|+++.+|.||+|++.
T Consensus 200 ~l~~~g-V~v~~~~~v~~i~--~--~--~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 200 LLARRG-IEVHEGAPVTRGP--D--G--ALILADGRTLPADAILWATGA 241 (364)
T ss_pred HHHHCC-CEEEeCCeeEEEc--C--C--eEEeCCCCEEecCEEEEccCC
Confidence 344457 9999999999984 2 3 355667888999999999874
No 342
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.64 E-value=0.018 Score=56.58 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||||.+|+-+|..|++.+ .+|+|+++.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~----~~Vtlv~~~~ 384 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIV----KHVTVLEFAP 384 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC----CEEEEEEECc
Confidence 47999999999999999999987 8999998654
No 343
>KOG1336|consensus
Probab=96.63 E-value=0.013 Score=55.07 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=72.6
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhhh
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPLL 82 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l~ 82 (365)
.|+|||+|..|+-+|..|...+ .+|++++....+=- +++
T Consensus 215 ~vV~vG~G~ig~Evaa~l~~~~----~~VT~V~~e~~~~~---------------------------------~lf---- 253 (478)
T KOG1336|consen 215 KVVCVGGGFIGMEVAAALVSKA----KSVTVVFPEPWLLP---------------------------------RLF---- 253 (478)
T ss_pred eEEEECchHHHHHHHHHHHhcC----ceEEEEccCccchh---------------------------------hhh----
Confidence 5999999999999999999987 99999998653310 000
Q ss_pred hcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEE
Q psy12489 83 DEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIV 162 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~v 162 (365)
...+.+.++.+.++-| +++++++.+.+++.+..+....|...+|+++.||.|
T Consensus 254 ---------------------------~~~i~~~~~~y~e~kg-Vk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlv 305 (478)
T KOG1336|consen 254 ---------------------------GPSIGQFYEDYYENKG-VKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLV 305 (478)
T ss_pred ---------------------------hHHHHHHHHHHHHhcC-eEEEEecceeecccCCCCcEEEEEeccCCEeccCeE
Confidence 0112344444444547 999999999999887632335688899999999999
Q ss_pred EEcCCh
Q psy12489 163 VLSMPA 168 (365)
Q Consensus 163 V~a~p~ 168 (365)
|+.++.
T Consensus 306 v~GiG~ 311 (478)
T KOG1336|consen 306 VVGIGI 311 (478)
T ss_pred EEeecc
Confidence 999875
No 344
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.59 E-value=0.24 Score=48.72 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=33.2
Q ss_pred hCCCceEEEeeeeEEeeecCCCCcE-EEEe---cCCC--eeecCEEEEcCChh
Q psy12489 123 KSNIDEICYNTFLETMAKTDSTNQI-EVTS---KEGK--KGIFDIVVLSMPAP 169 (365)
Q Consensus 123 ~~g~~~i~~~~~V~~i~~~~~~~~~-~v~~---~~g~--~~~~d~vV~a~p~~ 169 (365)
+.| ++|..+++|++|..++ +++ .+.+ .+|+ ++.|+.||.|+++.
T Consensus 140 ~~G-a~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~w 189 (516)
T TIGR03377 140 EHG-ARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIW 189 (516)
T ss_pred HcC-CEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcc
Confidence 458 9999999999998876 653 3443 2343 68999999999853
No 345
>KOG1335|consensus
Probab=96.58 E-value=0.0093 Score=54.38 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=69.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
++++|||||..||-.+---.+.| .+|+++|.-+.+||. + | ++
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLG----seVT~VEf~~~i~~~-----m--------D---------~E------------ 253 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLG----SEVTVVEFLDQIGGV-----M--------D---------GE------------ 253 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcC----CeEEEEEehhhhccc-----c--------C---------HH------------
Confidence 47899999999999999999998 899999998877642 1 0 00
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCC-cEEEEecC---C--C
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTN-QIEVTSKE---G--K 155 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~-~~~v~~~~---g--~ 155 (365)
+....+.++.+-| .+++++++|.+.+.++ + .+.|+..+ + +
T Consensus 254 -------------------------------isk~~qr~L~kQg-ikF~l~tkv~~a~~~~--dg~v~i~ve~ak~~k~~ 299 (506)
T KOG1335|consen 254 -------------------------------ISKAFQRVLQKQG-IKFKLGTKVTSATRNG--DGPVEIEVENAKTGKKE 299 (506)
T ss_pred -------------------------------HHHHHHHHHHhcC-ceeEeccEEEEeeccC--CCceEEEEEecCCCcee
Confidence 1122233333337 9999999999999988 5 55555432 3 3
Q ss_pred eeecCEEEEcCC
Q psy12489 156 KGIFDIVVLSMP 167 (365)
Q Consensus 156 ~~~~d~vV~a~p 167 (365)
+++||.+.++++
T Consensus 300 tle~DvlLVsiG 311 (506)
T KOG1335|consen 300 TLECDVLLVSIG 311 (506)
T ss_pred EEEeeEEEEEcc
Confidence 688999999975
No 346
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.58 E-value=0.023 Score=54.86 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=29.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCce-eEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLI-HITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~-~v~v~E~~ 37 (365)
++|+|||||.+|+-+|..|.+.| . +|+++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G----~~~Vtlv~~~ 306 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLG----AESVTIVYRR 306 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CCeEEEeeec
Confidence 47999999999999999999997 5 89999875
No 347
>PRK07846 mycothione reductase; Reviewed
Probab=96.55 E-value=0.003 Score=60.92 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=29.7
Q ss_pred cCCCeEEEecccccCCCchhHHHHHHHHHHhhhhcc
Q psy12489 312 SAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMVG 347 (365)
Q Consensus 312 ~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~~ 347 (365)
+..+++|.+||-..+....+.|...|+.+|+.|...
T Consensus 290 Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 290 TSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred cCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 345789999999885567888999999999999754
No 348
>KOG3923|consensus
Probab=96.43 E-value=0.0028 Score=55.65 Aligned_cols=37 Identities=11% Similarity=0.284 Sum_probs=28.7
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCC---ceeEEEEecC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTD---LIHITIWDKA 37 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~---~~~v~v~E~~ 37 (365)
|++|+|||+|+.||++|..+.+.+.+. -++|+|++-.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 479999999999999999998854221 2678888643
No 349
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.43 E-value=0.0038 Score=58.32 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=30.9
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|+|||||++|+.+|..|.++. . ..+|+++|+++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~-~~~itLVd~~~ 38 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P-DVEITLVDRRD 38 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C-CCcEEEEeCCC
Confidence 468999999999999999999973 1 27899999975
No 350
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.36 E-value=0.0044 Score=59.76 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=29.7
Q ss_pred cCCCeEEEecccccCCCchhHHHHHHHHHHhhhhcc
Q psy12489 312 SAKPLVICIGDSYVPQSNFDGCIHSAKQTTGASMVG 347 (365)
Q Consensus 312 ~~~~~l~~aGd~~~~~~~~~gA~~SG~~aA~~l~~~ 347 (365)
+..+++|.+||-..+....+-|...|+.+|+.|...
T Consensus 293 Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 293 TSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred cCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 345789999999885567788999999999999854
No 351
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.27 E-value=0.005 Score=56.16 Aligned_cols=34 Identities=21% Similarity=0.449 Sum_probs=31.4
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|.|||+|..|.+.|..|+++| ++|++++++.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G----~~V~v~d~~~ 35 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAG----HEVRLWDADP 35 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCC----CeeEEEeCCH
Confidence 468999999999999999999998 9999999874
No 352
>KOG2755|consensus
Probab=96.13 E-value=0.0042 Score=53.63 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=31.7
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
+.+||||||||++||-.|++.-++ .+|+++-+++-+
T Consensus 1 kfivvgggiagvscaeqla~~~ps--a~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPS--AEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCC--CcEEEEeccHHH
Confidence 368999999999999999999887 799999887654
No 353
>KOG1238|consensus
Probab=96.10 E-value=0.0059 Score=59.44 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=31.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
.|.+|||||-||+.+|-+|++.- + .+|+|+|++...
T Consensus 58 yDyIVVGgGtAGcvlAarLSEn~-~--~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 58 YDYIVVGGGTAGCVLAARLSENP-N--WSVLLLEAGGDP 93 (623)
T ss_pred CCEEEECCCchhHHHHHhhccCC-C--ceEEEEecCCCC
Confidence 58999999999999999999973 2 799999997655
No 354
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.10 E-value=0.0092 Score=48.58 Aligned_cols=32 Identities=22% Similarity=0.471 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|+|||||-.|.++|..|+++| ++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g----~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG----HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT----EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC----CEEEEEeccH
Confidence 5899999999999999999998 9999998864
No 355
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.03 E-value=0.0086 Score=58.24 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=30.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
++|+|||+|.+|+++|..|+++| ++|+++|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G----~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG----ARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC----CEEEEEeCCch
Confidence 47999999999999999999998 99999997653
No 356
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.00 E-value=0.01 Score=49.44 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=27.8
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|+|||+|..|...|..++..| ++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G----~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG----YEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT----SEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC----CcEEEEECCh
Confidence 5899999999999999999998 9999999864
No 357
>KOG1336|consensus
Probab=95.90 E-value=0.044 Score=51.54 Aligned_cols=41 Identities=7% Similarity=0.093 Sum_probs=35.8
Q ss_pred hCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCCh
Q psy12489 123 KSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 123 ~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~ 168 (365)
..+ +++++++.|++++... -+|.+.+|++++++++|+|+..
T Consensus 139 e~g-Ie~~~~t~v~~~D~~~----K~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 139 EKG-IELILGTSVVKADLAS----KTLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred hcC-ceEEEcceeEEeeccc----cEEEeCCCceeecceEEEeecC
Confidence 457 9999999999998866 3677889999999999999985
No 358
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.89 E-value=0.014 Score=47.03 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=28.9
Q ss_pred EEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 4 VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 4 v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|+|+|+|..|+..|+.|++.| ++|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g----~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG----HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT----CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCC----CceEEEEccc
Confidence 799999999999999999987 9999998865
No 359
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.86 E-value=0.11 Score=50.51 Aligned_cols=34 Identities=21% Similarity=0.110 Sum_probs=27.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||||..|+-+|..+.+.| ..+|++++...
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~g---a~~Vt~~~~~~ 315 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQG---AKSVTQRDIMP 315 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CCeEEEccccC
Confidence 47999999999999999988887 24788665543
No 360
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.014 Score=56.53 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=31.1
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
+|+|||.|.+|+++|+.|.++| ++|+++|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G----~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG----WEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC----CEEEEECCCCch
Confidence 5899999999999999999998 999999987644
No 361
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.57 E-value=0.014 Score=48.82 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=26.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||.|..||.+|..|+++| ++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G----~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG----HQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT----SEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCC----CEEEEEeCCh
Confidence 46999999999999999999998 9999999864
No 362
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.56 E-value=0.017 Score=52.12 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=30.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||+|..|.+.|..|+++| ++|+++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G----~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG----FDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC----CeEEEEeCCH
Confidence 68999999999999999999998 9999999753
No 363
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.53 E-value=0.018 Score=52.00 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=31.3
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|+|||+|..|...|..|+++| ++|++++.+.
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G----~~V~~~d~~~ 34 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSG----FQTTLVDIKQ 34 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCC----CcEEEEeCCH
Confidence 568999999999999999999998 9999999864
No 364
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.46 E-value=0.021 Score=51.48 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=30.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.+|+|||+|..|...|..|+++| ++|+++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G----~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG----VDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC----CEEEEEECCH
Confidence 57999999999999999999998 9999999874
No 365
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.42 E-value=0.019 Score=49.76 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=30.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++++|||+|-.|.+.|..|.+.| ++|+++|+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g----~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG----HNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC----CceEEEEcCH
Confidence 46999999999999999999998 9999999875
No 366
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.39 E-value=0.02 Score=53.07 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=31.1
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|+|||+|..|.+.|..|+++| ++|++++++.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G----~~V~~~~r~~ 35 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAG----ADVTLIGRAR 35 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcC----CcEEEEecHH
Confidence 568999999999999999999998 9999999853
No 367
>KOG4716|consensus
Probab=95.34 E-value=0.017 Score=51.90 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=29.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
.|.+|||||-+||+||.+.+..| .+|.++|-=
T Consensus 20 yDLIviGgGSgGLacaKeAa~~G----~kV~~lDfV 51 (503)
T KOG4716|consen 20 YDLIVIGGGSGGLACAKEAADLG----AKVACLDFV 51 (503)
T ss_pred ccEEEEcCCcchhhHHHHHHhcC----CcEEEEeec
Confidence 48999999999999999999998 999999963
No 368
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.33 E-value=0.044 Score=53.78 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=27.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|+|||+|.||+=.|..|++.. .+|.+.=|+
T Consensus 184 KrVlVVG~g~Sg~DIa~el~~~a----~~v~~s~R~ 215 (531)
T PF00743_consen 184 KRVLVVGGGNSGADIAVELSRVA----KKVYLSTRR 215 (531)
T ss_dssp SEEEEESSSHHHHHHHHHHTTTS----CCEEEECC-
T ss_pred CEEEEEeCCHhHHHHHHHHHHhc----CCeEEEEec
Confidence 58999999999999999999986 788887664
No 369
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.33 E-value=0.028 Score=46.08 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=29.2
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|.|||-|..|...|..|.++| ++|.+++++.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g----~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG----YEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT----TEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC----CeEEeeccch
Confidence 899999999999999999999998 9999999864
No 370
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.29 E-value=0.051 Score=53.86 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=70.1
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhhh
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPLL 82 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l~ 82 (365)
.-+|||||+-||=+|..|.+.| .+++|++=.+.+ + .++|
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~G----m~~~Vvh~~~~l------------------------------M------erQL- 185 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLG----MEVTVVHIAPTL------------------------------M------ERQL- 185 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCC----CceEEEeecchH------------------------------H------HHhh-
Confidence 3589999999999999999998 999998765422 0 0011
Q ss_pred hcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEE
Q psy12489 83 DEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIV 162 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~v 162 (365)
. +.=..+++...++.| .++++++..+.+...+ ....+.+.||..+.+|.|
T Consensus 186 --------D-------------------~~ag~lL~~~le~~G-i~~~l~~~t~ei~g~~--~~~~vr~~DG~~i~ad~V 235 (793)
T COG1251 186 --------D-------------------RTAGRLLRRKLEDLG-IKVLLEKNTEEIVGED--KVEGVRFADGTEIPADLV 235 (793)
T ss_pred --------h-------------------hHHHHHHHHHHHhhc-ceeecccchhhhhcCc--ceeeEeecCCCcccceeE
Confidence 0 000345555666668 8999988888887644 556789999999999999
Q ss_pred EEcCCh
Q psy12489 163 VLSMPA 168 (365)
Q Consensus 163 V~a~p~ 168 (365)
|+|+..
T Consensus 236 V~a~GI 241 (793)
T COG1251 236 VMAVGI 241 (793)
T ss_pred EEeccc
Confidence 999863
No 371
>KOG1346|consensus
Probab=95.28 E-value=0.055 Score=50.02 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=40.0
Q ss_pred HHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCEEEEcCCh
Q psy12489 118 KYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPA 168 (365)
Q Consensus 118 ~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~vV~a~p~ 168 (365)
+++.+. | +.++-|..|.++.... +...+...||.++..|.||+|++.
T Consensus 401 ekir~~-G-V~V~pna~v~sv~~~~--~nl~lkL~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 401 EKIRKG-G-VDVRPNAKVESVRKCC--KNLVLKLSDGSELRTDLVVVAVGE 447 (659)
T ss_pred HHHHhc-C-ceeccchhhhhhhhhc--cceEEEecCCCeeeeeeEEEEecC
Confidence 334443 7 9999999999998888 788999999999999999999864
No 372
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.25 E-value=0.025 Score=50.89 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=30.8
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|+|||+|..|...|..|+++| ++|+++|.+.
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g----~~V~~~d~~~ 36 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAG----YDVVMVDISD 36 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCC----CceEEEeCCH
Confidence 468999999999999999999998 8999998763
No 373
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.23 E-value=0.027 Score=51.67 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=31.5
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|.|||+|..|...|..|++.| ++|++++++.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g----~~V~~~~r~~ 34 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNG----HDVTLWARDP 34 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC----CEEEEEECCH
Confidence 789999999999999999999997 8999999863
No 374
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.23 E-value=0.15 Score=54.07 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=28.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|+|||+|..|+-+|..|++.|. ..|+|+|..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~---~vV~vv~~~ 350 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGI---AVVAIIDAR 350 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCC---ceEEEEccC
Confidence 479999999999999999999971 357888865
No 375
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.22 E-value=0.026 Score=51.52 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=30.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||+|..|...|..++.+| ++|+++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG----~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG----LDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC----CeEEEEeCCH
Confidence 57999999999999999999998 9999999864
No 376
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.07 E-value=0.032 Score=50.98 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=30.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||+|..|.+.|..|+++| ++|+++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g----~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAG----FDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCC----CeEEEEEeCC
Confidence 47999999999999999999998 9999998854
No 377
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.86 E-value=0.041 Score=49.79 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||+|..|...|..|+++| ++|++++++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G----~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG----YDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC----CeEEEEeCCH
Confidence 57999999999999999999998 9999999763
No 378
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.86 E-value=0.04 Score=49.79 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=30.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||+|..|...|..|+++| ++|+++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G----~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG----YDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC----CeEEEEeCCH
Confidence 58999999999999999999998 9999999864
No 379
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.71 E-value=0.037 Score=52.65 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=31.2
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|+|||.|..|+.+|..|+++| ++|++++.+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G----~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQ----KQVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCC----CEEEEEeCCH
Confidence 468999999999999999999998 9999999764
No 380
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.67 E-value=0.044 Score=52.86 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=30.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||+|.+|+.+|..|+++| ++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G----~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG----AKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC----CEEEEEeCCc
Confidence 47999999999999999999998 9999999864
No 381
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.65 E-value=0.048 Score=49.36 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=30.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|.|||+|..|...|..|+++| ++|+++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G----~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG----MDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC----CeEEEEeCCH
Confidence 57999999999999999999998 9999999864
No 382
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.57 E-value=0.057 Score=49.20 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=30.8
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCce-eEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLI-HITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~-~v~v~E~~~ 38 (365)
|++|+|||+|..|...|+.|++.| + .|.++|...
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~----~~ev~L~D~~~ 36 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKE----LGDVVLFDIVE 36 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC----CeEEEEEECCC
Confidence 789999999999999999999987 5 899999854
No 383
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.56 E-value=0.045 Score=49.84 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=29.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|+|||+|..|...|..|++.| .+|+++.++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G----~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG----LPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC----CCeEEEEec
Confidence 47999999999999999999998 899999986
No 384
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.54 E-value=0.053 Score=49.51 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=30.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|.|||+|..|.+.|..|++.| ++|++++.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g----~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG----LQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC----CeEEEEECCH
Confidence 58999999999999999999997 8999999754
No 385
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.54 E-value=0.06 Score=44.25 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=28.4
Q ss_pred CcEEEEccCH-HHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGI-TSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~-aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|+|||+|- +|..+|..|.++| .+|++..+.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g----~~V~v~~r~ 77 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN----ATVTVCHSK 77 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC----CEEEEEECC
Confidence 5799999995 7999999999997 889999875
No 386
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=94.44 E-value=0.018 Score=52.41 Aligned_cols=45 Identities=27% Similarity=0.338 Sum_probs=38.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcccee
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t 46 (365)
+.+-|||+|+|||++|..|-+-|.-+|-+++|+|.-.-.||....
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence 357899999999999999998887668999999998888875443
No 387
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.44 E-value=0.24 Score=49.35 Aligned_cols=108 Identities=14% Similarity=0.228 Sum_probs=69.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCccceeecCCCCCCeeeecccceeecChhcchhHHHhhhhh
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPL 81 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr~~t~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~l 81 (365)
.+++|||-|++|..+.-.|.+..+. -++|+||-...++. .++.- + ...+.... -++++
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~-~~~iTvfg~Ep~~n----Y~Ri~------L---s~vl~~~~--------~~edi 61 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPD-LYDITVFGEEPRPN----YNRIL------L---SSVLAGEK--------TAEDI 61 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcc-cceEEEeccCCCcc----cccee------e---ccccCCCc--------cHHHH
Confidence 4799999999999999999885442 48899997766552 11110 0 00111000 00011
Q ss_pred hhcCcccccccccccccccCCCcceEEcCCChHHHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEEEEecCCCeeecCE
Q psy12489 82 LDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDI 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~v~~~~g~~~~~d~ 161 (365)
|. . ...+.++.+ ++++.+.+|+.|++.+ -+|++.+|.++.+|.
T Consensus 62 --------~l-----------------~-------~~dwy~~~~-i~L~~~~~v~~idr~~----k~V~t~~g~~~~YDk 104 (793)
T COG1251 62 --------SL-----------------N-------RNDWYEENG-ITLYTGEKVIQIDRAN----KVVTTDAGRTVSYDK 104 (793)
T ss_pred --------hc-----------------c-------chhhHHHcC-cEEEcCCeeEEeccCc----ceEEccCCcEeecce
Confidence 00 0 011233457 9999999999998866 467888899999999
Q ss_pred EEEcCCh
Q psy12489 162 VVLSMPA 168 (365)
Q Consensus 162 vV~a~p~ 168 (365)
+|+|+..
T Consensus 105 LilATGS 111 (793)
T COG1251 105 LIIATGS 111 (793)
T ss_pred eEEecCc
Confidence 9999873
No 388
>KOG0405|consensus
Probab=94.40 E-value=0.05 Score=49.13 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=35.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCCCcc
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ggr 43 (365)
.|.+|||||-.|+.+|++.++.| .++.|+|..-++||.
T Consensus 21 fDylvIGgGSGGvasARrAa~~G----Akv~l~E~~f~lGGT 58 (478)
T KOG0405|consen 21 FDYLVIGGGSGGVASARRAASHG----AKVALCELPFGLGGT 58 (478)
T ss_pred cceEEEcCCcchhHHhHHHHhcC----ceEEEEecCCCcCce
Confidence 48999999999999999999998 999999998889985
No 389
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.40 E-value=0.051 Score=49.41 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=28.4
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEec
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDK 36 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~ 36 (365)
+|+|||+|..|.+.|..|+++| ++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g----~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG----RDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC----CceEEEec
Confidence 5999999999999999999997 89999987
No 390
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.39 E-value=0.055 Score=49.12 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=29.0
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
+|+|||+|-.|...|..|++.| ++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g----~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG----HDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC----CeEEEEECC
Confidence 5999999999999999999997 899999984
No 391
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.32 E-value=0.56 Score=47.59 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=28.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||||..|+-+|..+.+.| ..+|+++.+.+
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~g---a~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHG---ASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcC---CCeEEEeEecC
Confidence 47999999999999999999987 23698888753
No 392
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.27 E-value=0.083 Score=43.47 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=28.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
..|+|+|+|.+|..||..|...| .+|+++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lG----a~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLG----AEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-----EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCC----CEEEeccCCH
Confidence 37999999999999999999998 9999999753
No 393
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.26 E-value=0.073 Score=48.51 Aligned_cols=34 Identities=35% Similarity=0.485 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|+|||+|..|.++|+.|+++|.. ..+.++|.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~--~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLA--SEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC--CEEEEEECCc
Confidence 699999999999999999999742 4799999864
No 394
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.23 E-value=0.068 Score=49.76 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=31.5
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
|++|+|||+|-.|-.+|+.|++.|- .+|+|-+|+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d---~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD---GEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC---ceEEEEeCC
Confidence 8899999999999999999999972 799999987
No 395
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.19 E-value=0.07 Score=49.14 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=30.9
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|+|||+|..|...|..|+++| ++|++++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G----~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKG----VPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC----CeEEEEeCCH
Confidence 357999999999999999999998 9999999864
No 396
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.14 E-value=0.078 Score=45.18 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=29.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|+|||||-+|...+..|.+.| .+|+|+...
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g----a~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG----AQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC----CEEEEEcCC
Confidence 47999999999999999999998 899999764
No 397
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.13 E-value=0.063 Score=53.25 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=31.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
++|+|||||.+|+-+|..|++.| .+|+++++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g----~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYA----SKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccC----CEEEEEEeCCcc
Confidence 47999999999999999999997 899999987643
No 398
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.06 E-value=0.072 Score=51.36 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||||..|+-+|..|.+.| .+|+|+++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G----~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLG----AEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC----CEEEEEeecC
Confidence 47999999999999999999998 8899998864
No 399
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.92 E-value=0.055 Score=48.10 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=29.6
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
+|+|||||++|.-+|..+...| .+|+|+|.+
T Consensus 170 kv~iiGGGvvgtnaAkiA~glg----A~Vtild~n 200 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLG----ADVTILDLN 200 (371)
T ss_pred cEEEECCccccchHHHHHhccC----CeeEEEecC
Confidence 7999999999999999999997 999999987
No 400
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.89 E-value=0.075 Score=51.26 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=31.4
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|+|||.|-.|+.+|..|+++|. |++|+.+|.+.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~--g~~V~gvD~~~ 36 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCP--DIEVVVVDISV 36 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC--CCeEEEEECCH
Confidence 6789999999999999999999863 28899999754
No 401
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.88 E-value=0.064 Score=40.17 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=29.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|+|||||-.|..-+..|.+.| .+|+|+...
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~g----A~v~vis~~ 39 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAG----AKVTVISPE 39 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCT----BEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHhCC----CEEEEECCc
Confidence 47999999999999999999998 999999876
No 402
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.76 E-value=0.087 Score=50.95 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=30.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|+|.|.+|+++|..|+++| ++|++.|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G----~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG----AKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC----CEEEEECCCC
Confidence 57999999999999999999998 9999999764
No 403
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.67 E-value=0.08 Score=50.31 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=32.4
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
+++|+|+|-|.+|+++|..|+++| .+|++.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G----~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG----AEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC----CeEEEEcCCCCc
Confidence 468999999999999999999998 999999976544
No 404
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.61 E-value=0.13 Score=40.60 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=28.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|+|||+|-+|-++++.|.+.|. .+|+|+-|+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~---~~i~i~nRt 45 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGA---KEITIVNRT 45 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTS---SEEEEEESS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCC---CEEEEEECC
Confidence 479999999999999999999982 359998774
No 405
>KOG2304|consensus
Probab=93.60 E-value=0.063 Score=45.43 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=32.3
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
|+.|+|||||.-|.-.|...+..| ++|.+++++...
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg----~~V~l~d~~~~a 46 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSG----LNVWLVDANEDA 46 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcC----CceEEecCCHHH
Confidence 468999999999999999999998 999999997644
No 406
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=93.60 E-value=0.094 Score=47.52 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=31.5
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|.|||.|..|...|..|.++| ++|++++++.
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G----~~V~v~d~~~ 34 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQG----HQLQVFDVNP 34 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCC----CeEEEEcCCH
Confidence 778999999999999999999998 8999999864
No 407
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.60 E-value=0.11 Score=44.11 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=28.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEec
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDK 36 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~ 36 (365)
++|+|||||-.|...|..|.+.| .+|+|+++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g----a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG----AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC----CeEEEEcC
Confidence 57999999999999999999998 89999964
No 408
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.56 E-value=0.12 Score=41.99 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=27.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEe
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWD 35 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E 35 (365)
++|+|||||-.|..-|..|.+.| .+|+|+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g----a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG----AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC----CEEEEEc
Confidence 47999999999999999999997 9999994
No 409
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.56 E-value=0.096 Score=48.37 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|.|||.|-.||++|..|++.| ++|+++|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G----HeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG----HEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC----CeEEEEeCCH
Confidence 46999999999999999999998 9999999753
No 410
>PRK12831 putative oxidoreductase; Provisional
Probab=93.55 E-value=0.099 Score=50.62 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=29.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||||.+|+-+|..|.+.| .+|+|+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~G----a~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLG----AEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcC----CEEEEEeecC
Confidence 47999999999999999999998 8899998753
No 411
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.52 E-value=0.11 Score=47.15 Aligned_cols=35 Identities=29% Similarity=0.553 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCce-eEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLI-HITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~-~v~v~E~~~~~ 40 (365)
++|+|||+|..|..+|+.|+.+| + +|+++|....+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g----~~~VvlvDi~~~l 37 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKE----LADLVLLDVVEGI 37 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcC----CCeEEEEeCCCCh
Confidence 36999999999999999999987 4 89999985443
No 412
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.50 E-value=0.17 Score=40.29 Aligned_cols=35 Identities=31% Similarity=0.370 Sum_probs=30.4
Q ss_pred CcEEEEcc-CHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGS-GITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGa-G~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||+ |-.|.++|+.|.+.+.. -++.++|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~--~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA--DEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS--SEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC--CceEEeccCc
Confidence 46999999 99999999999999853 5699999874
No 413
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.37 E-value=0.1 Score=50.53 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|+|.|.+|.++|..|.++| .+|++.|.+.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g----~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL----PAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC----CEEEEEcCCC
Confidence 47999999999999999999998 9999999654
No 414
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.29 E-value=0.11 Score=48.41 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=28.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCcee-EEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIH-ITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~-v~v~E~~ 37 (365)
++|+|||+|..|+-+|..|.+.| .+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g----~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLG----AEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC----CCeEEEEeec
Confidence 36999999999999999999987 76 9999875
No 415
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.27 E-value=0.12 Score=47.49 Aligned_cols=32 Identities=25% Similarity=0.535 Sum_probs=29.4
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|.|||+|-.|.+.|..|++.| ++|.++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g----~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK----ISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC----CeEEEEecCH
Confidence 5999999999999999999998 8999998853
No 416
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.25 E-value=0.12 Score=46.36 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=29.3
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|.|||.|..|.+.|..|+++| ++|.+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g----~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG----HTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC----CEEEEEECCH
Confidence 5999999999999999999997 8999998753
No 417
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.23 E-value=0.13 Score=48.22 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=29.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.+|+|||+|.+|+.+|..|++.| .+|++++++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG----a~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG----ATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC----CeEEEEECCH
Confidence 36999999999999999999998 8999999853
No 418
>PRK04148 hypothetical protein; Provisional
Probab=93.11 E-value=0.099 Score=40.95 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=29.0
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
+|++||.| .|...|..|++.| ++|+.+|-+..
T Consensus 19 kileIG~G-fG~~vA~~L~~~G----~~ViaIDi~~~ 50 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESG----FDVIVIDINEK 50 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCC----CEEEEEECCHH
Confidence 59999999 9999999999998 99999998754
No 419
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.89 E-value=0.11 Score=49.33 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=30.3
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
+|.|||.|..|+.+|..|+++| ++|++++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G----~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLG----HEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcC----CeEEEEECCHH
Confidence 6999999999999999999998 99999998653
No 420
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.86 E-value=0.22 Score=35.81 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=28.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEec
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDK 36 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~ 36 (365)
++++|+|+|-.|..+|..|.+.+ +.++.++++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~---~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG---GKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEEcC
Confidence 47999999999999999999985 378999988
No 421
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.78 E-value=0.16 Score=46.21 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=30.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|.|||+|..|.+.|..|+++| ++|+++.++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G----~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANG----HRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCC----CEEEEEeCCC
Confidence 36999999999999999999998 9999999864
No 422
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.71 E-value=0.15 Score=49.75 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=29.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|+|+|.|.+|++++..|+++| .+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G----~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG----ARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC----CEEEEEcCC
Confidence 47999999999999999999998 999999964
No 423
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.69 E-value=0.19 Score=42.65 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=29.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCce-eEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLI-HITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~-~v~v~E~~ 37 (365)
.+|+|||+|-.|...|..|++.| . +++|+|..
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~G----vg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAG----IGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcC----CCEEEEECCC
Confidence 47999999999999999999998 6 69999886
No 424
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.66 E-value=0.17 Score=47.82 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=29.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
..|+|+|+|..|+.+|..|+..| .+|+++|.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G----a~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG----ARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC----CEEEEEECCh
Confidence 37999999999999999999998 8999998864
No 425
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.65 E-value=0.15 Score=49.84 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||+|..|...|..|.++| ++|+|++++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G----~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG----IDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC----CeEEEEeCCH
Confidence 47999999999999999999998 9999999863
No 426
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.59 E-value=0.17 Score=49.46 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=30.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
++|.|||+|..|...|..|+++| ++|+++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG----~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAG----HTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC----CeEEEEeCCHH
Confidence 47999999999999999999998 99999997643
No 427
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.57 E-value=0.13 Score=46.77 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=30.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
++|+|+|+|..|...|+.|+++| .+|+++=++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g----~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG----HDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC----CeEEEEecHHH
Confidence 46999999999999999999998 78999877764
No 428
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.55 E-value=0.17 Score=49.19 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=30.1
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
+++|+|+|.|-+|+++|+.|.+.| ++|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G----~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELG----CDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCC----CEEEEECCC
Confidence 367999999999999999999998 899999964
No 429
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.49 E-value=0.26 Score=37.50 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=27.6
Q ss_pred EEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 4 VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 4 v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|+|+|.|-.|..++..|.+.+ .+|+++|.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~----~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG----IDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT----SEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC----CEEEEEECCc
Confidence 799999999999999999975 7999999975
No 430
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.43 E-value=0.18 Score=48.97 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=29.2
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|+|+|+|.+|+.++..++..| .+|.++|.+.
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~lG----A~V~a~D~~~ 198 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLG----AIVRAFDTRP 198 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHCC----CEEEEEeCCH
Confidence 7999999999999999999998 7899998753
No 431
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.38 E-value=0.18 Score=49.18 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=30.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|.|||+|..|...|..|+++| ++|+++|++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG----~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAG----HQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC----CeEEEEeCCH
Confidence 47999999999999999999998 9999999864
No 432
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.35 E-value=0.17 Score=51.77 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=30.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||||..|...|..++.+| ++|+++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G----~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG----VPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC----CeEEEEeCCH
Confidence 57999999999999999999998 9999999864
No 433
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.26 E-value=0.24 Score=45.41 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=30.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
++|+|||+|-.|.++|+.|+..|. .++.++|.+..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl---~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNL---GDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC---CeEEEEeCCCc
Confidence 479999999999999999999872 28999998654
No 434
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.17 E-value=0.3 Score=38.43 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=29.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
.+|+|||+|-.|..+|..|++.|. -+++|+|..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv---~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGV---GKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTT---SEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCC---CceeecCCc
Confidence 479999999999999999999993 489999985
No 435
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.12 E-value=0.25 Score=44.97 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=30.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
++|+|||+|-.|.++|+.|...|.. .++.++++...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~--~ei~l~D~~~~ 36 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA--DELVLIDINEE 36 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC--CEEEEEeCCcc
Confidence 3699999999999999999999742 47999998643
No 436
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.08 E-value=0.23 Score=47.83 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=30.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
+.|+|+|.|-+|+++|..|+++| ++|+++|..+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g----~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG----AEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC----CEEEEEeCCCC
Confidence 47999999999999999999998 99999997654
No 437
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.07 E-value=0.2 Score=49.06 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=30.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|.|||.|-+|+++|..|+++| ++|.+.|...
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G----~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG----ARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC----CEEEEEcCCC
Confidence 47999999999999999999998 9999999754
No 438
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.04 E-value=0.17 Score=48.91 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=30.4
Q ss_pred CcEEEEccCHHHHH-HHHHHHHhcCCCceeEEEEecCCC
Q psy12489 2 KKVLIVGSGITSAL-TSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 2 ~~v~IIGaG~aGl~-~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
++|.|||.|-+|++ +|..|+++| ++|.+.|....
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G----~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG----YKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC----CeEEEECCCCC
Confidence 47999999999999 699999998 99999997643
No 439
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.00 E-value=0.24 Score=44.79 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=30.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||.|.+|..++..|++.| .+|++++++.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~G----a~V~v~~r~~ 185 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALG----ANVTVGARKS 185 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC----CEEEEEECCH
Confidence 47999999999999999999998 8999998863
No 440
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=91.98 E-value=0.21 Score=42.17 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=28.1
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEE
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIW 34 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~ 34 (365)
|+.+.|+|.|-.|-++|.+|+++| ++|+|-
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag----~eV~ig 30 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG----HEVIIG 30 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC----CeEEEe
Confidence 889999999999999999999998 889884
No 441
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.96 E-value=0.21 Score=47.08 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=27.5
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|.|||.|..|+.+|..|+. | ++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G----~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-N----HEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-C----CcEEEEECCH
Confidence 59999999999999988875 7 9999999754
No 442
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.91 E-value=0.2 Score=51.08 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=30.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||||..|...|..++++| ++|+++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G----~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKG----TPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCC----CeEEEEeCCH
Confidence 47999999999999999999998 9999999764
No 443
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.90 E-value=0.21 Score=48.26 Aligned_cols=35 Identities=9% Similarity=0.277 Sum_probs=32.2
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG 39 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~ 39 (365)
|.+|.|||.|.-|..+|..|+++| ++|.+++++..
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G----~~V~v~dr~~~ 35 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRG----FKISVYNRTYE 35 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCC----CeEEEEeCCHH
Confidence 789999999999999999999998 99999998643
No 444
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.80 E-value=0.23 Score=47.82 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=30.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+.|+|+|+|-+|+++|..|+++| ++|.+.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G----~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG----ANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC----CEEEEEcCCC
Confidence 46999999999999999999998 9999998754
No 445
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.80 E-value=0.24 Score=44.81 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|.|||.|..|...|..|++.| ++|.+++++.
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g----~~v~~~d~~~ 35 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAG----YSLVVYDRNP 35 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCC----CeEEEEcCCH
Confidence 358999999999999999999997 8999998764
No 446
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.73 E-value=0.27 Score=43.97 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=31.4
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
|+.|+|||.|..|-+.|+.|+++| +.+.|+.+....
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g----~~v~i~g~d~~~ 38 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAG----LVVRIIGRDRSA 38 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcC----CeEEEEeecCcH
Confidence 468999999999999999999998 889888876533
No 447
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.73 E-value=0.25 Score=45.01 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=29.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.+|+|||+|..|.+.|..|++.|.. .+|.+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~--~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLA--GEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCC--cEEEEEECCH
Confidence 4799999999999999999998731 4899998763
No 448
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.69 E-value=0.26 Score=44.30 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=28.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|+|||+|-+|-++|+.|.+.|. .+|+|+++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~---~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGV---ERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC---CEEEEECCC
Confidence 469999999999999999999982 379999875
No 449
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.68 E-value=0.23 Score=46.65 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=30.0
Q ss_pred CcEEEEc-cCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVG-SGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIG-aG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+||| .|..|-+.|..|+++| +.|+++++++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G----~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSG----YQVRILEQDD 132 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCC----CeEEEeCCCc
Confidence 5799999 8999999999999998 9999999753
No 450
>KOG2311|consensus
Probab=91.64 E-value=0.16 Score=47.98 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=29.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
.||+|||||=||+-+|.+.++-| .+.+++-.+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~G----a~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLG----ARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcC----CceEEeecc
Confidence 49999999999999999999998 888888765
No 451
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.55 E-value=0.29 Score=42.19 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=27.6
Q ss_pred cEEEEc-cCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 3 KVLIVG-SGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 3 ~v~IIG-aG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
+|.||| +|..|.++|..|.+.| ++|+++.++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G----~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG----NKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC----CEEEEEEcC
Confidence 599997 7999999999999997 899998664
No 452
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.52 E-value=0.29 Score=44.10 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=30.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||.|-+|.++|..|+..| .+|++++++.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G----~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG----ARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC----CEEEEEeCCH
Confidence 47999999999999999999998 8999998853
No 453
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.51 E-value=0.22 Score=44.91 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=29.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
+.|.|||||.-|-..|+.++..| ++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G----~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAG----YDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcC----CceEEEeCC
Confidence 58999999999999999999965 999999997
No 454
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.42 E-value=0.26 Score=47.08 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=30.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||-|.+|.++|..|+++| ++|.++|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G----~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG----VYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC----CEEEEEeCCc
Confidence 47999999999999999999998 8999999754
No 455
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.42 E-value=0.32 Score=41.24 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=29.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
+.|+|+|.|-.|..+|..|.+.| .+|+++|.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G----~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG----AKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC----CEEEEEcCC
Confidence 47999999999999999999998 999998754
No 456
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.31 E-value=0.18 Score=45.68 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=28.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+||+|||||-+|+-+|.-|+--- ..|+++|=.+
T Consensus 355 K~VAVIGGGNSGvEAAIDLAGiv----~hVtllEF~~ 387 (520)
T COG3634 355 KRVAVIGGGNSGVEAAIDLAGIV----EHVTLLEFAP 387 (520)
T ss_pred ceEEEECCCcchHHHHHhHHhhh----heeeeeecch
Confidence 69999999999999999998764 5799998654
No 457
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.30 E-value=0.24 Score=51.06 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=29.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCcee-EEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIH-ITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~-v~v~E~~~ 38 (365)
++|+|||||.+|+-+|..|.+.| .+ |+|+++.+
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~G----a~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLG----AERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcC----CCeEEEeeecC
Confidence 47999999999999999999998 65 99998753
No 458
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.29 E-value=0.24 Score=47.84 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=28.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|+|+|.|.+|.++|..|++ | .+|+|.|..
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g----~~v~v~D~~ 37 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-K----YDVIVYDDL 37 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-C----CEEEEECCC
Confidence 479999999999999999995 7 999999954
No 459
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.24 E-value=0.28 Score=50.05 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=29.6
Q ss_pred CcEEEEccCHHHHHHHHHHH-HhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLR-QKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~-~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||||..|...|..++ ++| ++|+++|.+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G----~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAG----IPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcC----CeEEEEeCCH
Confidence 57999999999999999998 577 9999999864
No 460
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.20 E-value=0.31 Score=42.25 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=28.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCce---eEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLI---HITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~---~v~v~E~~ 37 (365)
.+|+|+|+|-+|..+|..|.+.| . ++.|+++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G----~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAG----AKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcC----cCcceEEEEeCC
Confidence 36999999999999999999998 5 58888886
No 461
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.04 E-value=0.26 Score=50.44 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=30.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|.|||||..|...|..++.+| ++|+++|.+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G----~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKG----LKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCC----CcEEEecCCH
Confidence 47999999999999999999998 9999999764
No 462
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.02 E-value=0.32 Score=47.18 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=29.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.+|+|+|+|.+|++++..++..| .+|+++|.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG----A~V~v~d~~~ 197 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG----AIVRAFDTRP 197 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC----CEEEEEeCCH
Confidence 37999999999999999999998 7899998764
No 463
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.91 E-value=1.9 Score=40.23 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=32.6
Q ss_pred ceEEEeeeeEEeeecCCCCc-EEEEecC---C--CeeecCEEEEcCChh
Q psy12489 127 DEICYNTFLETMAKTDSTNQ-IEVTSKE---G--KKGIFDIVVLSMPAP 169 (365)
Q Consensus 127 ~~i~~~~~V~~i~~~~~~~~-~~v~~~~---g--~~~~~d~vV~a~p~~ 169 (365)
+.+.-++.|.+++..+ ++ +.+++.+ | .++..|.||+||+-.
T Consensus 293 v~l~~~~ev~~~~~~G--~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 293 VRLLSLSEVQSVEPAG--DGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred eeeccccceeeeecCC--CceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 6789999999999887 55 7777643 2 368899999999854
No 464
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.79 E-value=0.42 Score=43.58 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=30.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.+|+|||+|-.|.++|+.|...+.. -.+.|+|...
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~--~el~LiD~~~ 38 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLA--DELVLVDVVE 38 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC--CEEEEEeCCc
Confidence 3799999999999999999998843 4799999764
No 465
>PTZ00325 malate dehydrogenase; Provisional
Probab=90.73 E-value=0.44 Score=43.58 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=29.8
Q ss_pred CCcEEEEcc-CHHHHHHHHHHHHhcCCCceeEEEEec
Q psy12489 1 MKKVLIVGS-GITSALTSYLLRQKLLTDLIHITIWDK 36 (365)
Q Consensus 1 m~~v~IIGa-G~aGl~~A~~L~~~g~~~~~~v~v~E~ 36 (365)
|.+|+|||+ |-.|.++|+.|+..+.. ..+.++|.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~--~elvL~Di 42 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHV--SELSLYDI 42 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCC--CEEEEEec
Confidence 679999999 99999999999976643 67999998
No 466
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.59 E-value=0.38 Score=45.33 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=30.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+.|+|||.|..|..+|..|+..| .+|+++|.+.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G----a~ViV~d~dp 228 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG----ARVIVTEVDP 228 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc----CEEEEEeCCh
Confidence 47999999999999999999997 8999999764
No 467
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=90.59 E-value=0.39 Score=46.76 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=30.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCCCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~~~ 40 (365)
++|+|||||..|+-+|..+.+.| +.+|+++|..++.
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~g---a~~V~vv~~~~~~ 319 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHG---AASVHQFEIMPKP 319 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CCEEEEEEecCCC
Confidence 47999999999999998888887 3589999886544
No 468
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.54 E-value=0.35 Score=43.88 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=28.2
Q ss_pred EEEEccCHHHHHHHHHHHHhcCCCce-eEEEEecCC
Q psy12489 4 VLIVGSGITSALTSYLLRQKLLTDLI-HITIWDKAR 38 (365)
Q Consensus 4 v~IIGaG~aGl~~A~~L~~~g~~~~~-~v~v~E~~~ 38 (365)
|+|||+|..|..+|+.|+..| + +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~----l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKE----LGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCC----CcEEEEEeCCC
Confidence 689999999999999999987 6 999999864
No 469
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.50 E-value=0.34 Score=49.53 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=29.7
Q ss_pred CcEEEEccCHHHHHHHHHHH-HhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLR-QKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~-~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||||..|...|..++ ..| ++|+++|.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G----~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAG----LPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcC----CeEEEEeCCH
Confidence 47999999999999999999 777 9999999864
No 470
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.36 E-value=0.44 Score=43.52 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=29.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.+|+|||+|-.|.++|+.|...+.. -.+.++|.+.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~--~el~L~D~~~ 41 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIA--DELVIIDINK 41 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC--CEEEEEeCCC
Confidence 3799999999999999999999832 2799999754
No 471
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.34 E-value=0.44 Score=43.98 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=29.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
.+|+|||+|-.|..+|..|++.|. -+++|+|..
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D 57 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGV---GKVTIVDRD 57 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC---CeEEEEeCC
Confidence 479999999999999999999983 389999985
No 472
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.20 E-value=0.38 Score=43.44 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=29.4
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|.|||.|..|...|..|.+.| ++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G----~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG----YQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC----CeEEEEcCCH
Confidence 4899999999999999999998 9999998864
No 473
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.15 E-value=0.45 Score=43.92 Aligned_cols=34 Identities=35% Similarity=0.381 Sum_probs=29.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||+|-.|..+|..|++.|. -+++|+|...
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGv---g~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGI---GKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC---CEEEEEcCCc
Confidence 479999999999999999999983 3899999863
No 474
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.13 E-value=0.53 Score=42.83 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=28.8
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|+|||+|-.|.++|+.|..++.. -.+.|+|...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~--~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF--SEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC--CEEEEEeCCc
Confidence 589999999999999999988742 3699999753
No 475
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=90.06 E-value=0.45 Score=44.08 Aligned_cols=34 Identities=29% Similarity=0.250 Sum_probs=29.6
Q ss_pred CCcEEEEcc-CHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 1 MKKVLIVGS-GITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 1 m~~v~IIGa-G~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
|++|+|.|| |+.|..++..|.+.+ |++|+.+.++
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~---~~~V~~~~r~ 35 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETT---DWEVYGMDMQ 35 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCC---CCeEEEEeCc
Confidence 778999998 999999999998863 3899999864
No 476
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.06 E-value=0.41 Score=46.18 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=29.6
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|+|+|+|..|..+|..|.++| ++|+++|++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g----~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGEN----NDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCC----CcEEEEECCH
Confidence 6999999999999999999997 9999999854
No 477
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.06 E-value=1.2 Score=42.19 Aligned_cols=56 Identities=11% Similarity=0.017 Sum_probs=40.0
Q ss_pred HHHHHHHhhCCCceEEEeeeeEEeeecCCCCcEE-EEecCC--CeeecCEEEEcCChhhHHHh
Q psy12489 115 SIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIE-VTSKEG--KKGIFDIVVLSMPAPQVTDL 174 (365)
Q Consensus 115 ~l~~~l~~~~g~~~i~~~~~V~~i~~~~~~~~~~-v~~~~g--~~~~~d~vV~a~p~~~~~~l 174 (365)
.|.+++. +.| +++..+++|.++..++ +++. +.+.++ .++.+|+||+|++......|
T Consensus 268 aL~~~~~-~~G-g~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL 326 (419)
T TIGR03378 268 ALKHRFE-QLG-GVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGL 326 (419)
T ss_pred HHHHHHH-HCC-CEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHH
Confidence 3444443 458 8999999999999877 6655 555555 47899999999885434443
No 478
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=90.05 E-value=0.44 Score=43.46 Aligned_cols=33 Identities=36% Similarity=0.495 Sum_probs=28.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
.+|+|||+|..|..+|..|.+.| +.+|+|++++
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g---~~~V~v~~r~ 211 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKG---VAEITIANRT 211 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcC---CCEEEEEeCC
Confidence 47999999999999999999876 3689998875
No 479
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.04 E-value=0.54 Score=41.73 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=30.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.+|+|||+|-.|..+|..|++.|. -+++|+|...
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GV---g~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGI---GAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCC---CEEEEEeCCE
Confidence 479999999999999999999984 5899999764
No 480
>PRK08017 oxidoreductase; Provisional
Probab=90.02 E-value=0.5 Score=41.40 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=29.2
Q ss_pred CcEEEEcc-CHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGS-GITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGa-G~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+.|+|+|| |..|..+|..|.++| ++|+++.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g----~~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG----YRVLAACRKP 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC----CEEEEEeCCH
Confidence 46999999 999999999999998 8999987753
No 481
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=89.97 E-value=0.56 Score=37.70 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=28.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|+|||+|..|.+.|..|.+.| +.+|.+++++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g---~~~v~v~~r~ 52 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG---AAKIVIVNRT 52 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CCEEEEEcCC
Confidence 47999999999999999999985 2789998875
No 482
>KOG3851|consensus
Probab=89.92 E-value=0.31 Score=43.70 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=28.9
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|+|||||-+|+++|..+.++-+. -+|-|+|-.+
T Consensus 41 kvLVvGGGsgGi~~A~k~~rkl~~--g~vgIvep~e 74 (446)
T KOG3851|consen 41 KVLVVGGGSGGIGMAAKFYRKLGS--GSVGIVEPAE 74 (446)
T ss_pred EEEEEcCCcchhHHHHHHHhhcCC--CceEEecchh
Confidence 699999999999999999887654 5789998754
No 483
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.91 E-value=0.36 Score=46.70 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=29.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||+|.+|+=.|..|++.+ .+|+++.++.
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a----~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVA----KEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhC----CeEEEEEeec
Confidence 57999999999999999999997 8999988753
No 484
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.84 E-value=0.42 Score=46.05 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=29.4
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
-|+|||.|-+|.++|..|+++| ++|.+.|...
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G----~~v~~~D~~~ 39 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG----IPFAVMDSRE 39 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC----CeEEEEeCCC
Confidence 4899999999999999999998 9999999754
No 485
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.73 E-value=0.63 Score=38.51 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=28.4
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
+|+|||+|-.|...|..|++.|. -+++|+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv---g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV---GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC---CeEEEEeCC
Confidence 58999999999999999999983 369999985
No 486
>PLN02256 arogenate dehydrogenase
Probab=89.71 E-value=0.54 Score=42.73 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=29.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|.|||.|..|-+.|..|++.| .+|.+++++.
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G----~~V~~~d~~~ 69 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQG----HTVLATSRSD 69 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCC----CEEEEEECcc
Confidence 47999999999999999999987 8999998763
No 487
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.70 E-value=0.52 Score=38.20 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+.++|+|=|-.|-.+|..|+..| .+|+|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G----a~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG----ARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-----EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCC----CEEEEEECCh
Confidence 57999999999999999999998 9999999864
No 488
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=89.67 E-value=0.55 Score=43.53 Aligned_cols=34 Identities=21% Similarity=0.021 Sum_probs=30.5
Q ss_pred CCcEEEEcc-CHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGS-GITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGa-G~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|++|+|.|| |+.|..++.+|.++| ++|+++++..
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g----~~V~~~d~~~ 49 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLN----QTVIGLDNFS 49 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC----CEEEEEeCCC
Confidence 468999998 999999999999998 9999998753
No 489
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.58 E-value=0.52 Score=45.44 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=31.0
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+++|+|+|+|-.|..+|..|.+.| ++|+++|++.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~----~~v~vid~~~ 264 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG----YSVKLIERDP 264 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC----CeEEEEECCH
Confidence 357999999999999999999997 9999999874
No 490
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.44 E-value=0.67 Score=39.71 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=29.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
.+|+|||+|-.|..+|..|++.|. -+++|+|..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gv---g~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGV---GNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCC---CeEEEEeCC
Confidence 479999999999999999999994 469999885
No 491
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.42 E-value=0.6 Score=39.29 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=28.0
Q ss_pred CcEEEEcc-CHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGS-GITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGa-G~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|+|+|| |..|..+|..|.+.| .+|+++.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g----~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG----ARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC----CEEEEEcCC
Confidence 46999997 999999999999987 899998654
No 492
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.37 E-value=0.7 Score=36.74 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=28.8
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|+|||+|-.|..+|..|.+.|. -+++|+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv---~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV---GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCC
Confidence 58999999999999999999983 3799998763
No 493
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.35 E-value=0.58 Score=41.77 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=28.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
+.|+|+|+|-+|.++|+.|++.| .+|+|+.++
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g----~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD----CNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC----CEEEEEeCC
Confidence 46999999999999999999997 899998764
No 494
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=89.33 E-value=0.63 Score=36.76 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=27.0
Q ss_pred EEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 4 VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 4 v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|+|..+..++..++..| ++|+|+|-..
T Consensus 1 L~I~GaG~va~al~~la~~lg----~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLG----FRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCT----EEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCC----CEEEEEcCCc
Confidence 589999999999999999998 9999999864
No 495
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.33 E-value=0.46 Score=45.95 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=29.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~ 37 (365)
++|.|||.|-+|+++|..|+++| ++|.+.|..
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G----~~v~~~D~~ 41 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGG----AEVIAWDDN 41 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC----CEEEEECCC
Confidence 46999999999999999999998 999999965
No 496
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.08 E-value=0.58 Score=44.42 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=30.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+.|+|||.|..|..+|..|+..| .+|+++|...
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G----a~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG----ARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC----CEEEEEcCCc
Confidence 46999999999999999999998 8999999764
No 497
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=89.02 E-value=0.53 Score=49.64 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=29.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 2 ~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
++|+|||||.+|+-+|..+.+.| .+|+++.+++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~G----a~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLG----GNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC----CEEEEEEecC
Confidence 47999999999999999999998 7899998754
No 498
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.94 E-value=0.53 Score=43.75 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=27.0
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
.|+|+|+|+.||.++..++..| ..+|++.|.++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G---a~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG---ASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CceEEEeCCCH
Confidence 4999999999999988888887 25778877753
No 499
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=88.93 E-value=0.67 Score=43.46 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCcEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 1 m~~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
|+.|.|||||--|.+++..+++.| ++|.+++...
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG----~~v~~~d~~~ 35 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLG----YKVIVLDPDP 35 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC----CEEEEEeCCC
Confidence 678999999999999999999998 9999998764
No 500
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.91 E-value=0.62 Score=42.21 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=29.7
Q ss_pred cEEEEccCHHHHHHHHHHHHhcCCCceeEEEEecCC
Q psy12489 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38 (365)
Q Consensus 3 ~v~IIGaG~aGl~~A~~L~~~g~~~~~~v~v~E~~~ 38 (365)
+|.|||.|..|...|..|.+.| ++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g----~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG----HDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC----CEEEEEECCH
Confidence 6999999999999999999998 9999998864
Done!