RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12489
(365 letters)
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 113 bits (284), Expect = 1e-28
Identities = 80/334 (23%), Positives = 128/334 (38%), Gaps = 40/334 (11%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
M + IVG+GI +Y LR+ +T+++K RG GGR+ T R + D G
Sbjct: 1 MPSIAIVGAGIAGLAAAYALREAGRE----VTVFEKGRGVGGRLATRRL---DGGRFDHG 53
Query: 61 LQYITT-TPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVT----HYVTPQGSSS 115
QY FL + L D+ L++ +T + + YV G S+
Sbjct: 54 AQYFKPRDELFL----RAVEALRDDGLVDVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSA 109
Query: 116 IVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLF 175
+ K+ + T + +A+TD+ + T + FD VVL++PAPQ L
Sbjct: 110 LAKFLATDLT---VVLETRVTEVARTDNDWTLH-TDDGTRHTQFDDVVLAIPAPQTATLL 165
Query: 176 NRSEMMHIALTGA-AQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEIIRYISFDNV 234
L A L DV Y+ ++ + + + +RP+ F D + +++ D
Sbjct: 166 TTDA---DDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWP-GNFVDGHPLAWLARDAS 221
Query: 235 KRNR-PDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSW-----PLPAET 288
K+ PD I V V + + LD VI +R P P +
Sbjct: 222 KKGHVPDGEIWV-VQASPDWSREHLDH-PAEQVIV-----ALRAAAQELDGDRLPEPDWS 274
Query: 289 KLQTWKYSQVVDPHRDKLGFMQFSAKPLVICIGD 322
W+Y+ D PL C GD
Sbjct: 275 DAHRWRYAIPNDAVAGPPLDADREL-PLYAC-GD 306
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 50.5 bits (122), Expect = 1e-08
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 6 IVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQYIT 65
IVG+G++ + +YLL ++ + + +K GG S P + D G
Sbjct: 1 IVGAGLSGLVAAYLLAKRGK----DVLVLEKRDRIGGNA---YSERDPGYRHDYGAHIFH 53
Query: 66 TT 67
T+
Sbjct: 54 TS 55
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 38.7 bits (91), Expect = 0.004
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSR 48
KKV I+G GIT +Y L +K IT+ + + GG++ T R
Sbjct: 1 KKVAIIGGGITGLSAAYRLHKKGPD--ADITLLEASDRLGGKIQTVR 45
Score = 32.9 bits (76), Expect = 0.25
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 123 KSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMH 182
K I T + + K+ E+ G + D V++++P P + LF
Sbjct: 230 KLPAGTIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPHPVLPSLFVAPPAFA 287
Query: 183 IA----LTGAAQVLL 193
+ T A V L
Sbjct: 288 LFKTIPSTSVATVAL 302
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 37.8 bits (88), Expect = 0.007
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 19/101 (18%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGL 61
V+IVG+G+ +Y L++ + I + GGR T+R+ DLG
Sbjct: 8 ADVIIVGAGLAGLSAAYELKK----AGYQVQILEARDRVGGRSLTARAGGEY---TDLGG 60
Query: 62 QYITTTPDFLSNHTDIYQPLLDEK--LLEPF---TANIIGY 97
QYI + D E LEPF N+IGY
Sbjct: 61 QYI-------NPTHDALLAYAKEFGVPLEPFIRDGDNVIGY 94
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 33.7 bits (77), Expect = 0.15
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRS 49
V+I+G GI +Y L ++ +T+ + GG R+
Sbjct: 4 KMDVVIIGGGIVGLSAAYYLAERGAD----VTVLEAGEAGGG--AAGRN 46
>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit;
Provisional.
Length = 410
Score = 33.1 bits (76), Expect = 0.21
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSN 50
M + ++G+GIT T+Y L Q+ +T++D+ R M TS +N
Sbjct: 1 MSHIAVIGAGITGVTTAYALAQRGY----QVTVFDRHRYAA--METSFAN 44
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 32.7 bits (75), Expect = 0.23
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 3 KVLIVGSGITSALTSY-LLRQKLLTDLIHITIWDKARGPGGRMTTSRS 49
V+++G GI T+Y L R+ L +T+ ++ G + R+
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGL-----SVTLLERGDLASG--ASGRN 41
>gnl|CDD|163532 TIGR03820, lys_2_3_AblA, lysine-2,3-aminomutase. This model
describes lysine-2,3-aminomutase as found along with
beta-lysine acetyltransferase in a two-enzyme pathway
for making the compatible solute
N-epsilon-acetyl-beta-lysine. This compatible solute, or
osmolyte, is known to protect a number of methanogenic
archaea against salt stress. The trusted cutoff
distinguishes a tight clade with essentially full-length
homology from additional homologs that are shorter or
highly diverged in the C-terminal region. All members of
this family have the radical SAM motif CXXXCXXC, while
some but not all have a second copy of the motif in the
C-terminal region.
Length = 417
Score = 32.7 bits (75), Expect = 0.28
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 217 IKYFDDNEIIRYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIR 276
I+ D E + I+F +R E + + T YY S +D E RN D I
Sbjct: 18 IRDIDTFEKLLGITFSEEEREELKETLEKFPMSITPYYLSLIDPEDLRN-------DPIF 70
Query: 277 KMFPSWPLPAETKLQTWKYSQVVDP-HRDK 305
S+P PAE + DP D+
Sbjct: 71 MQ--SFPSPAELIVSNHDME---DPLAEDE 95
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 31.5 bits (72), Expect = 0.72
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVV 52
V+I+G GI A T+Y L + + + + +K G +++ S V+
Sbjct: 3 DYDVVIIGGGIMGAATAYELSE--YEPDLSVALLEKEDGVAQESSSNNSGVI 52
>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent.
This enzyme converts malate into oxaloacetate in the
citric acid cycle. The critical residues which
discriminate malate dehydrogenase from lactate
dehydrogenase have been characterized , and have been
used to set the cutoffs for this model. Sequences
showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd
were kept above trusted, while those in which the
capitalized residues in the patterns were found to be
Q, E and E were kept below the noise cutoff. Some
sequences in the grey zone have been annotated as
malate dehydrogenases, but none have been
characterized. Phylogenetically, a clade of sequences
from eukaryotes such as Toxoplasma and Plasmodium which
include a characterized lactate dehydrogenase and show
abiguous critical residue patterns appears to be more
closely related to these bacterial sequences than other
eukaryotic sequences. These are relatively long branch
and have been excluded from the model. All other
sequences falling below trusted appear to be
phylogenetically outside of the clade including the
trusted hits. The annotation of Botryococcus braunii as
lactate dehydrogenase appears top be in error. This was
initially annotated as MDH by Swiss-Prot and then
changed. The rationale for either of these annotations
is not traceable [Energy metabolism, TCA cycle].
Length = 305
Score = 31.0 bits (70), Expect = 0.87
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITI 33
KK+ ++G+G A T++ L +K L DL+ + +
Sbjct: 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 31.0 bits (71), Expect = 0.91
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1 MKKVLIVGSGITSALTSYLLRQK-LLTDLIHI-TIWDK 36
+KKVLIVG GI + LR+ + DL+ I W
Sbjct: 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV 41
>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 31.2 bits (71), Expect = 0.93
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 36/94 (38%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT-TSRSNVVPNCKVDLGL 61
+VLIVGSG+TS +LR+ RG G +T SR +VP
Sbjct: 198 RVLIVGSGLTSIDQVLVLRR---------------RGHKGPITAISRRGLVP-------- 234
Query: 62 QYITTTPDFLSNHTDI-YQPLLDEKLLEPFTANI 94
H + Y+PL D L +P + +
Sbjct: 235 ----------RPHIPVPYEPLGDF-LSDPANSAL 257
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 31.0 bits (71), Expect = 0.99
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 12/47 (25%)
Query: 2 KKVLIVG---SGITSALTSYLLRQKLLTDLIH-ITIWDKARGPGGRM 44
K+V ++G +G+++A Y LR+ + H +TI++ GG M
Sbjct: 138 KRVAVIGGGPAGLSAA---YHLRR-----MGHAVTIFEAGPKLGGMM 176
>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 30.5 bits (69), Expect = 1.1
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 12/79 (15%)
Query: 257 FLDSETPRNVIERELLDLIRKM---------FPSWPLPAETKLQTWKYSQVVDPHRDKLG 307
N E ELL LI+ + PLP + T + +DP++D G
Sbjct: 63 SDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRH--IDTKMVLEAIDPNKDVDG 120
Query: 308 FMQFSAKPLVICIGDSYVP 326
F + L + D +VP
Sbjct: 121 FHPLNIGKLCSQL-DGFVP 138
>gnl|CDD|182134 PRK09897, PRK09897, hypothetical protein; Provisional.
Length = 534
Score = 30.9 bits (70), Expect = 1.2
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 1 MKKVLIVGSGITSALTSY-LLRQKLLTDLIHITIWDKARGPGGRMTTSRSN 50
MKK+ IVG+G T T + LL+Q+ + I+I+++A G M S
Sbjct: 1 MKKIAIVGAGPTGIYTFFSLLQQQ---TPLSISIFEQADEAGVGMPYSDEE 48
>gnl|CDD|226497 COG4009, COG4009, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 88
Score = 28.2 bits (63), Expect = 1.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 232 DNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDL 274
V N DE + T+ YY FL+ +EREL D+
Sbjct: 30 AKVDLNDDDELAIFNIEGTSSYYVVFLEEVESEEEVERELEDM 72
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 30.1 bits (68), Expect = 2.1
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 10/46 (21%)
Query: 2 KKVLIVGSGITSALTS--YLLRQKLLTDLIH-ITIWDKARGPGGRM 44
KKV I+G+G + LT+ YLLR+ H +TI+D GG M
Sbjct: 194 KKVAIIGAG-PAGLTAAYYLLRKG------HDVTIFDANEQAGGMM 232
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 29.7 bits (67), Expect = 2.3
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG-------RMTTSRS 49
V I+G+G + +Y L+Q + D I++K GG S
Sbjct: 8 HTDVAIIGAGQSGLAAAYALKQAGVPD---FVIFEKRDDVGGTWRYNRYPGLRLDS 60
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This enzyme
oxidizes protoporphyrinogen IX to protoporphyrin IX, a
precursor of heme and chlorophyll. Bacillus subtilis
HemY also has coproporphyrinogen III to coproporphyrin
III oxidase activity in a heterologous expression
system, although the role for this activity in vivo is
unclear. This protein is a flavoprotein and has a
beta-alpha-beta dinucleotide binding motif near the
amino end [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 462
Score = 29.8 bits (67), Expect = 2.4
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT-------------- 46
K V+I+G GI+ +Y L +++ + +T+ + + GG++ T
Sbjct: 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDS 61
Query: 47 --SRSNVVPNCKVDLGLQYITTTPDFLSNHTD 76
R P+ DLGL+ +S+ T
Sbjct: 62 FLERKKSAPDLVKDLGLE-----HVLVSDATG 88
>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family
oxidoreductase 2. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp., in Pelotomaculum
thermopropionicum SI (Firmicutes), and in Geobacter
uraniireducens Rf4 (Deltaproteobacteria). The function
of this oxidoreductase is unknown.
Length = 645
Score = 30.0 bits (68), Expect = 2.5
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 2 KKVLIVG---SGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46
K+VL+VG +G+ +A T+ + +T++++ GG++
Sbjct: 380 KRVLVVGGGPAGLEAAATAARRGHR-------VTLFEREDRLGGQVRL 420
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 29.7 bits (67), Expect = 2.9
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 1 MKKVLIVGSGI---TSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46
M V+++G+G+ +A L R L +T+ +K GGR T
Sbjct: 3 MYDVVVIGAGLNGLAAAA--LLARAGL-----KVTVLEKNDRVGGRART 44
>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 281
Score = 29.4 bits (66), Expect = 2.9
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 261 ETPRNVIERELLDLIRKMFPSWP--------LPAETKLQTWKYSQVVDPHRDKLGFMQFS 312
E P + ++E+L+ I M + P LP + T K + +DP +D GF ++
Sbjct: 67 EMPSTISQKEILETI-AMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYN 125
Query: 313 AKPLVICIGDSYVP 326
LV + D +VP
Sbjct: 126 VGRLVTGL-DGFVP 138
>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed.
Length = 307
Score = 28.9 bits (66), Expect = 4.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITI 33
KK+ I+G+G A ++LL K L D++ I
Sbjct: 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDI 34
>gnl|CDD|184677 PRK14431, PRK14431, acylphosphatase; Provisional.
Length = 89
Score = 27.1 bits (60), Expect = 4.3
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 29 IHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQY-ITTTPDFLSNHTDIYQPLLDEKLL 87
IH+ ++ + +G G R T R + + Y I T + ++ +IY D+ L
Sbjct: 4 IHLQVFGRVQGVGFRYFTQR----------IAMNYNIVGTVQNVDDYVEIYA-QGDDADL 52
Query: 88 EPFTANIIGYKSRKKNVTHY 107
E F +I S NVT Y
Sbjct: 53 ERFIQGVIEGASPASNVTSY 72
>gnl|CDD|114112 pfam05370, DUF749, Domain of unknown function (DUF749). Archaeal
domain of unknown function. This domain has been solved
as part of a structural genomics project and comprises
of segregated helical and anti-parallel beta sheet
regions.
Length = 87
Score = 27.0 bits (60), Expect = 5.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 230 SFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIEREL 271
D + + DE + TT Y+ FLDS I++EL
Sbjct: 27 GLDKKELDDDDEIAIFNIEGTTSYHVLFLDSYNSIEEIKKEL 68
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 28.0 bits (63), Expect = 7.6
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 1 MKKVLIVGS---GITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46
+ V+I+G G+T+A+ Y R L + + PGG++T
Sbjct: 3 IYDVIIIGGGPAGLTAAI--YAARAGLKV-----VLILEGGEPGGQLTK 44
>gnl|CDD|111933 pfam03092, BT1, BT1 family. Members of this family are
transmembrane proteins. Several are Leishmania putative
proteins that are thought to be pteridine transporters.
One such protein, previously termed (and is still
annotated as) ORFG, was shown to encode a biopterin
transport protein using null mutants, thus being
subsequently renamed BT1. The significant similarity of
ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative
transmembrane protein and another member of this family)
was previously noted. This family also contains five
putative Arabidopsis thaliana proteins of unknown
function. In addition, it also contains two predicted
prokaryotic proteins (from the cyanobacteria
Synechocystis and Synechococcus).
Length = 425
Score = 28.1 bits (63), Expect = 7.6
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 265 NVIERELLDLIRKMFPSWPLPAETK--LQTWKYSQVVDPHRDKLGFMQFSAKPLVICIGD 322
+ E E+L L R P L + + WK + + L ++ F A PLVI D
Sbjct: 173 VLKEEEVLGLGRPPVPC-LLGLNREVISRNWKAFRYPEILAPTLTWISFWAAPLVIAKAD 231
Query: 323 SYVPQSNFDGCIHSAKQTTGASMV 346
+ Q+N G + + G V
Sbjct: 232 MFYYQTNELGGPNFSYSFYGTVKV 255
>gnl|CDD|193257 pfam12781, AAA_9, ATP-binding dynein motor region D5. The 380
kDa motor unit of dynein belongs to the AAA class of
chaperone-like ATPases. The core of the 380 kDa motor
unit contains a concatenated chain of six AAA modules,
of which four correspond to the ATP binding sites with
P-loop signatures described previously, and two are
modules in which the P loop has been lost in evolution.
This particular family is the D5 ATP-binding region of
the motor, but has lost its P-loop.
Length = 228
Score = 28.0 bits (62), Expect = 7.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 24 LLTDLIHITIWDKARGPGGRMTTSRSNVVPNCK-----VDLGLQYI 64
+LTD + W+ P RM+T + ++ NC+ VD LQ I
Sbjct: 1 MLTDDADVATWNNEGLPSDRMSTENATILGNCERWPLMVDPQLQGI 46
>gnl|CDD|177977 PLN02343, PLN02343, allene oxide cyclase.
Length = 229
Score = 27.8 bits (62), Expect = 7.8
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 255 NSFLDSETPRNVIERELLDLIRKMFPSWPL--PAETKLQTWKYSQVVDPHRDKLGFMQFS 312
++ D + + + L + R +F + P TK+Q ++ + R F++ S
Sbjct: 20 SNGPDFSSRSSFTTSKNLTVTRALFSNKANENPRPTKVQELSVYEINERDRGSPAFLKLS 79
Query: 313 AKPLVICIGDSYVPQSN--FDGCIHS-AKQTTGASMVGKH 349
K + +GD VP +N + G + T G ++ +H
Sbjct: 80 KKSVENALGD-LVPFTNKLYTGDLKKRLGITAGLCVLIQH 118
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 28.1 bits (63), Expect = 8.8
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 206 FFDKQFERPFDIKYFDDNEIIRYISFDNVKRNRPDEPIS------VCVHTTT 251
F + P DIK +D + + + D+++ N P + V +H ++
Sbjct: 48 KFKEAGVDPDDIKTLEDLAKLPFTTKDDLRENYPFGDFAVPKEEIVRIHASS 99
>gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase.
Length = 342
Score = 27.8 bits (61), Expect = 8.8
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 245 VCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPLPAETK 289
V V+ +L +E+ R+ E+++++ K+FP +PLP + K
Sbjct: 236 VLVYEAPSASGRYLLAESARH--RGEVVEILAKLFPEYPLPTKCK 278
>gnl|CDD|217113 pfam02572, CobA_CobO_BtuR, ATP:corrinoid adenosyltransferase
BtuR/CobO/CobP. This family consists of the BtuR, CobO,
CobP proteins all of which are Cob(I)alamin
adenosyltransferase, EC:2.5.1.17, involved in cobalamin
(vitamin B12) biosynthesis. These enzymes catalyze the
adenosylation reaction: ATP + cob(I)alamin + H2O <=>
phosphate + diphosphate + adenosylcobalamin.
Length = 172
Score = 27.4 bits (62), Expect = 9.3
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 171 VTDLFNRSEMMHIALTG--AAQVLLDV 195
+ L NR E H+ LTG A L+++
Sbjct: 120 LELLRNRPEGQHVVLTGRGAPPELIEL 146
>gnl|CDD|216426 pfam01307, Plant_vir_prot, Plant viral movement protein. This
family includes several known plant viral movement
proteins from a number of different ssRNA plant virus
families including potexviruses, hordeiviruses and
carlaviruses.
Length = 98
Score = 26.4 bits (59), Expect = 9.6
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLT---DLIH 30
K L G+ AL + L + L D IH
Sbjct: 9 KPYLAAAIGLGLALVLFTLTRSTLPHVGDNIH 40
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,603,643
Number of extensions: 1771158
Number of successful extensions: 1726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1717
Number of HSP's successfully gapped: 47
Length of query: 365
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 267
Effective length of database: 6,590,910
Effective search space: 1759772970
Effective search space used: 1759772970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)