RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12489
(365 letters)
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 162 bits (410), Expect = 3e-47
Identities = 118/341 (34%), Positives = 177/341 (51%), Gaps = 10/341 (2%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
M +VLIVG+G+T +L + LLR++ L ++ +WDKA GGRMTT+ S P C DLG
Sbjct: 1 MAQVLIVGAGMTGSLCAALLRRQTSGPL-YLAVWDKADDSGGRMTTACSPHNPQCTADLG 59
Query: 61 LQYITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYF 120
QYIT TP + H Y LL +L P ++ I G ++ + ++V PQG SSI+K++
Sbjct: 60 AQYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMVMKEGD-CNFVAPQGISSIIKHY 118
Query: 121 LNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEM 180
L +S E+ + + + D ++ EV+ + G FD++VL+MP P++ L
Sbjct: 119 LKESG-AEVYFRHRVTQINLRD--DKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITT 175
Query: 181 MHIALTGAAQVLLDVEYSSRYAFGMFFDK--QFERPFDIKYFDDNEIIRYISFDNVKRNR 238
+ Q L V YSSRYA G+F++ + + P+ +Y N IR++S DN KRN
Sbjct: 176 LISEC--QRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNI 233
Query: 239 PDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPLPAETKLQTWKYSQV 298
I + T E ++ + + + P P P TK Q W++SQV
Sbjct: 234 ESSEIGPSLVIHTTVPFGVTYLEHSIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQV 293
Query: 299 VDPHRDKLGFMQFSAKPLVICIGDSYVPQSNFDGCIHSAKQ 339
+ + G M KP + C GD + QSNFDGCI SA
Sbjct: 294 TNAAANCPGQMTLHHKPFLACGGDGFT-QSNFDGCITSALC 333
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 130 bits (328), Expect = 3e-35
Identities = 63/342 (18%), Positives = 127/342 (37%), Gaps = 28/342 (8%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
+ I+G+GI + L + ++DK+RG GGRM++ R +D+G
Sbjct: 2 TVPIAIIGTGIAGLSAAQALTAAG----HQVHLFDKSRGSGGRMSSKR---SDAGALDMG 54
Query: 61 LQYITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRK--KNVTHYVTPQGSSSIVK 118
QY T + +Q P N + +V G S+I +
Sbjct: 55 AQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPSPDEQVRWVGKPGMSAITR 114
Query: 119 YFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEG-KKGIFDIVVLSMPAPQVTDLFNR 177
+ ++ + + + + + EG G F V+++ PAPQ + L
Sbjct: 115 AMRGDMP---VSFSCRITEVFRGE--EHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAA 169
Query: 178 SEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEIIRYISFDNVKRN 237
+ + + V+ +A + F+ + P + D+ + +++ + K
Sbjct: 170 APKLASVVA-------GVKMDPTWAVALAFETPLQTPMQGCFVQDS-PLDWLARNRSKPE 221
Query: 238 RPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPLPAETKLQTWKYSQ 297
R D + +H T+Q+ LD + VIE + + P P + W Y++
Sbjct: 222 RDDTLDTWILHATSQWSRQNLD-ASREQVIEHLHGAFAELIDCTMPAPVFSLAHRWLYAR 280
Query: 298 VVDPHRDKLGFMQFSAKPLVICIGDSYVPQSNFDGCIHSAKQ 339
H + G + + + +C GD + +G S ++
Sbjct: 281 PAGAH--EWGALSDADLGIYVC-GD-WCLSGRVEGAWLSGQE 318
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 43.7 bits (103), Expect = 7e-05
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 2 KKVLIVGSGITSALTS-YLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
++ I+G+G + L + L Q D TI ++ GG+ S + ++G
Sbjct: 7 SRIAIIGAGP-AGLAAGMYLEQAGFHD---YTILERTDHVGGKC---HSPNYHGRRYEMG 59
Query: 61 LQYITTT 67
+
Sbjct: 60 AIMGVPS 66
Score = 37.5 bits (87), Expect = 0.005
Identities = 29/200 (14%), Positives = 65/200 (32%), Gaps = 19/200 (9%)
Query: 112 GSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQV 171
G+ ++ ++ N + + + D ++ + + + + D++VL++P +
Sbjct: 204 GTQAMFEHLNATLE-HPAERNVDITRITRED--GKVHIHTTDWDR-ESDVLVLTVPLEKF 259
Query: 172 TDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEII-RYIS 230
D + + + + + E P Y DN R
Sbjct: 260 LDYSDADDD-------EREYFSKIIHQQYMVDACLVK---EYPTISGYVPDNMRPERLGH 309
Query: 231 FDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPLPAETKL 290
D+P + TT N ++ + + +LD + P+ +
Sbjct: 310 VMVYYHRWADDPHQII--TTYLLRNHPDYADKTQEECRQMVLDDMETFGH--PVEKIIEE 365
Query: 291 QTWKYSQVVDPHRDKLGFMQ 310
QTW Y V K G+ +
Sbjct: 366 QTWYYFPHVSSEDYKAGWYE 385
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 41.9 bits (98), Expect = 3e-04
Identities = 33/249 (13%), Positives = 76/249 (30%), Gaps = 37/249 (14%)
Query: 110 PQGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAP 169
G ++V+ + + ++ T + ++ + S + G D V+++ P
Sbjct: 231 STGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYS--LELDNGVTLDADSVIVTAPHK 288
Query: 170 QVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERPFDIKYF-----DDNE 224
+ + A L ++ +S + F + + + +
Sbjct: 289 AAAGMLSELP--------AISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDF 340
Query: 225 IIRYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSE---TPRNVIERELLDLIRKMFPS 281
I ++ N K + Y D N I +L+ ++K+
Sbjct: 341 AITACTWTNKKWPHAAPEGKTLLRA---YVGKAGDESIVDLSDNDIINIVLEDLKKVMNI 397
Query: 282 WPLPAETKLQTWKYS--QVVDPHRDKL----GFMQFSAKPLVICIGDSY----VPQSNFD 331
P T + W S Q H+ ++ + + + + G S+ +P
Sbjct: 398 NGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMT-GASFEGVGIP----- 451
Query: 332 GCIHSAKQT 340
CI K
Sbjct: 452 DCIDQGKAA 460
Score = 41.1 bits (96), Expect = 4e-04
Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 19/108 (17%)
Query: 2 KKVLIVGSGITSALTS-YLLRQKLLTDL--IHITIWDKARGPGGRMTTSRSNVVPNCKVD 58
K V+I+G GI + L + + + +++ + +T+ + + GG++ T + + ++
Sbjct: 6 KHVVIIGGGI-TGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYI---IE 61
Query: 59 LGLQYITTTPDFLSNHTDIYQPLLDE-----KLLEPFTANIIGYKSRK 101
G PD L+ + L+ T +R
Sbjct: 62 RG-------PDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRT 102
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 41.7 bits (97), Expect = 3e-04
Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 20/111 (18%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGL 61
K+V ++G+G++ +Y L+ +++T+++ GG++ + + + D G
Sbjct: 14 KRVAVIGAGVSGLAAAYKLKIH----GLNVTVFEAEGKAGGKLRSVSQDGLI---WDEG- 65
Query: 62 QYITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQG 112
+ ++ L+D L + R Y+ G
Sbjct: 66 ------ANTMTESEGDVTFLIDSLGLREKQQFPLSQNKR------YIARNG 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 4e-04
Identities = 32/264 (12%), Positives = 69/264 (26%), Gaps = 75/264 (28%)
Query: 52 VPNCKVDLGLQYITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTP- 110
+ + + D + +L ++ ++ +II K
Sbjct: 26 EDAFVDNFDCKDV---QDMP-------KSILSKEEID----HIIMSKDAVSGTLRLFWTL 71
Query: 111 -QGSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAP 169
+V+ F+ + I Y FL + KT+ Q S + I L
Sbjct: 72 LSKQEEMVQKFVE--EVLRINYK-FLMSPIKTE-QRQ---PSMMTRMYIEQRDRLYNDNQ 124
Query: 170 QVTDLF-NRSEMMH--------------IALTG---------AAQVLLDVEYSSRYAFGM 205
+R + + + G A V L + + F +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 206 FFDKQFERPFDIKYFDDNEIIRYISFDNVKRNRPDEPI----SVCVHTTTQYYNSFLDSE 261
F +++ N N P+ + + + + S
Sbjct: 185 F---------------------WLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 262 TPRNVIERELLDLIRKMFPSWPLP 285
+ I + +R++ S P
Sbjct: 222 NIKLRIH-SIQAELRRLLKSKPYE 244
Score = 36.4 bits (83), Expect = 0.018
Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 22/125 (17%)
Query: 193 LDVEYSS-RYAFG---MFFDKQFERPFDIKYFDD--NEIIRYISFDNVKRNRPDEPISVC 246
+D E +Y + F+ F FD K D I+ D++ D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDA----- 60
Query: 247 VHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSW---PLPAETK---LQTWKYSQVVD 300
V T + + + L ++++ + +++R + + P+ E + + T Y + D
Sbjct: 61 VSGTLRLFWTLLSK--QEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 301 P-HRD 304
+ D
Sbjct: 118 RLYND 122
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 40.0 bits (93), Expect = 0.001
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 16/88 (18%)
Query: 2 KKVLIVGSGITSALTS-YLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
V +VG GI S L + LR + + + + GG + T V+ G
Sbjct: 17 MNVAVVGGGI-SGLAVAHHLRSR----GTDAVLLESSARLGGAVGTHALAGYL---VEQG 68
Query: 61 LQYITTTPDFLSNHTDIYQPLLDEKLLE 88
P+ + + L LE
Sbjct: 69 -------PNSFLDREPATRALAAALNLE 89
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 40.0 bits (93), Expect = 0.001
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 16/118 (13%)
Query: 2 KKVLIVGSGITSALTS-YLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
K+++IVG GI + L + Y + ++IT+ + GG++ T R + ++ G
Sbjct: 5 KRLVIVGGGI-TGLAAAYYAERAF--PDLNITLLEAGERLGGKVATYREDGFT---IERG 58
Query: 61 LQYITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSR--KKNVTHYVTPQGSSSI 116
PD I L++ L ++ H + I
Sbjct: 59 -------PDSYVARKHILTDLIEAIGLGEKLVRNNTSQAFILDTGGLHPIPKGAVMGI 109
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 39.7 bits (92), Expect = 0.001
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGL 61
+ V+++G GI+ SY L + + + + + GG + + R +LG
Sbjct: 3 RTVVVLGGGISGLAASYHLSRAPCP--PKVVLVESSERLGGWIRSVR--GPNGAIFELGP 58
Query: 62 QYITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSR 100
+ I + + L + + P + ++R
Sbjct: 59 RGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNR 97
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 38.7 bits (89), Expect = 0.003
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSR 48
K++I+G+G T + L + + +++ PGG +
Sbjct: 9 TPKIVIIGAGPTGLGAAVRLTELGYKN---WHLYECNDTPGGLSRSFL 53
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 36.5 bits (84), Expect = 0.012
Identities = 58/343 (16%), Positives = 109/343 (31%), Gaps = 86/343 (25%)
Query: 1 MKKVLIVGSGITSALTS--YLLRQKLLTDLIHITIWDKARGPGG----RMTTSRSNVVPN 54
++K+ I+G+G S L + LL +K +T++++ PGG T S VP+
Sbjct: 6 IRKIAIIGAGP-SGLVTAKALLAEKAFDQ---VTLFERRGSPGGVWNYTSTLSNKLPVPS 61
Query: 55 CKVDLGLQYITTTPDFLSNHTDIYQPL---LDEKLLE----PFTANIIGYKSRKKNVTHY 107
L + I + +Y+ L +L+ F + + +
Sbjct: 62 TNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQF------PHRH 115
Query: 108 VTPQGSSSIVKYFLNKSN--IDEICYNTFLETMAKTDSTNQIEVTSKEGKKG------IF 159
I +Y + + I T + + K D VT K K G IF
Sbjct: 116 T-------IQEYQRIYAQPLLPFIKLATDVLDIEKKD--GSWVVTYKGTKAGSPISKDIF 166
Query: 160 DIVVLS--------MPAPQVTDLFNRS---EMMH--------------IALTGA------ 188
D V + +P + D + ++ ++H + + G
Sbjct: 167 DAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSAND 226
Query: 189 -----AQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEIIRYISFDNVKRNRPDEPI 243
V Y S G ++ ++ +I FD R I K + +
Sbjct: 227 LVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFD--PTTREIYLKGGKVLSNIDRV 284
Query: 244 SVCVHTTTQYYNSFLDSE---TPRNVI---ERELLDLIRKMFP 280
C T Y F +P + + ++ + +F
Sbjct: 285 IYC--TGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFY 325
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 35.3 bits (81), Expect = 0.031
Identities = 33/201 (16%), Positives = 66/201 (32%), Gaps = 36/201 (17%)
Query: 1 MKKVLIVGSGIT--SALTSYLLRQKLLTDLIHITIWDKARGPGGRMT-TSRSNVVPNCKV 57
++ I+G+G + + L ++ Q+ ++ + ++K GG+ T R+ + N +
Sbjct: 2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP 61
Query: 58 DLGLQY---ITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSS 114
Y + P D E F I Y R+ + Y
Sbjct: 62 VHSSMYRYLWSNGPKECLEFADYTFD-------EHFGKPIASYPPREV-LWDY------- 106
Query: 115 SIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKG-----IFDIVVLS---- 165
I I +NT + + + + VT ++ FD VV
Sbjct: 107 -IKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHF 165
Query: 166 ----MPAPQVTDLFNRSEMMH 182
+P + + F ++H
Sbjct: 166 STPYVPEFEGFEKFGG-RILH 185
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 34.9 bits (81), Expect = 0.041
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVD 58
+++G+G + L +L +DKA GPGG T N P D
Sbjct: 10 DAVVIGAGFGGIYAVHKLHHELGLT---TVGFDKADGPGG---TWYWNRYPGALSD 59
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 34.5 bits (78), Expect = 0.046
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 1 MKKVLIVGSG-ITSALTSYLLRQKLLTDLIHITIWD 35
K VL++GSG +T L I +T+
Sbjct: 3 TKSVLMLGSGFVTRPTLDVLTDSG-----IKVTVAC 33
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 34.4 bits (78), Expect = 0.051
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 1 MKKVLIVGSG-ITSALTSYLLRQKLLTDLIHITIWD 35
K VL++GSG + + L D I++T+
Sbjct: 23 GKNVLLLGSGFVAQPVIDTLAA----NDDINVTVAC 54
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 34.1 bits (78), Expect = 0.077
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 2 KKVLIVG---SGITSALTSYLLRQKLLTDLIHITIWDKARG-PGGRMTTSRSNVVPNCKV 57
+V++VG SGI++A L + +TDL+ + +A GGRM + V
Sbjct: 5 PRVIVVGAGMSGISAA---KRLSEAGITDLLIL----EATDHIGGRMHKTNF---AGINV 54
Query: 58 DLGLQYITTTPDFLSN 73
+LG ++ N
Sbjct: 55 ELGANWVEGVNGGKMN 70
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 34.1 bits (77), Expect = 0.077
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 14/89 (15%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGL 61
VL++G+G T + L Q D I D PGG +T V
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQI---DGPSWMIVDSNETPGGLAST---------DVTPEG 58
Query: 62 QYITTTPD-FLSNHTDIYQPLLDEKLLEP 89
S++ LDE L +
Sbjct: 59 FLYDVGGHVIFSHYKYFDD-CLDEALPKE 86
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 33.6 bits (77), Expect = 0.10
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 4 VLIVG---SGITSALTSYLLRQKLLTDLIHITIWDKARG-PGGRMTTSRSNVVPNCKVDL 59
++VG SG+ +A L L+ + GGR + S VP +V++
Sbjct: 4 AIVVGGGFSGLKAA---RDLTNAGKKVLLL-----EGGERLGGRAYSRESRNVPGLRVEI 55
Query: 60 GLQYITTT 67
G Y+
Sbjct: 56 GGAYLHRK 63
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 33.5 bits (77), Expect = 0.11
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37
M KVL++G + +Y L+ +L+ + + +K+
Sbjct: 1 MTKVLVLGGRFGALTAAYTLK-RLVGSKADVKVINKS 36
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 33.1 bits (75), Expect = 0.13
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42
M +IVGSG+ A+ + L++ + + +K GG
Sbjct: 1 MYDYIIVGSGLFGAVCANELKKL----NKKVLVIEKRNHIGG 38
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 33.2 bits (76), Expect = 0.14
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 32/101 (31%)
Query: 2 KKVLIVG---SGITSALTSYLLRQK-----LLTDLIHITIWDKARG-PGGRMTTSRSNVV 52
+ V IVG SG+ +A LR+ ++ +AR GGR T +
Sbjct: 6 RDVAIVGAGPSGLAAA---TALRKAGLSVAVI----------EARDRVGGRTWTDTIDGA 52
Query: 53 PNCKVDLGLQYITTTPDFLSNHTDIYQPLLDEKLLEPFTAN 93
+++G Q+++ T + LLDE L+ F
Sbjct: 53 V---LEIGGQWVSPD------QTALIS-LLDELGLKTFERY 83
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 32.5 bits (75), Expect = 0.21
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 21/89 (23%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQ 62
VL+VG+G + Y LR+ + + + + A GG N P + D
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGRS----VHVIETAGDVGG---VWYWNRYPGARCD---- 66
Query: 63 YITTTPDFLSNHTDIYQPLLDEKLLEPFT 91
+ Y E++L+ +
Sbjct: 67 ----IE----SI--EYCYSFSEEVLQEWN 85
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 32.1 bits (72), Expect = 0.30
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 2 KKVLIVG---SGITSALTSYLLRQKLLTDLIHITIWDKARG-PGGRMTTSRSNVVPNCKV 57
KKV+I+G +G+ +A L Q + D + + +AR GGR+ T K
Sbjct: 9 KKVIIIGAGIAGLKAA---STLHQNGIQDCLVL----EARDRVGGRLQTVTG--YQGRKY 59
Query: 58 DLGLQYITTT 67
D+G + T
Sbjct: 60 DIGASWHHDT 69
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 31.8 bits (73), Expect = 0.39
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVD 58
+++G+G+T ++L+ Q + + + GG T N P C++D
Sbjct: 11 DAVVIGAGVTGIYQAFLINQAGMK----VLGIEAGEDVGG---TWYWNRYPGCRLD 59
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 31.4 bits (71), Expect = 0.48
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 15/73 (20%)
Query: 2 KKVLIVG---SGITSALTSYLLRQKLLTDL-IHITIWDKARG-PGGRMTTSRSNVVPNCK 56
K V+IVG +G+++A +L +T+ + A PGGR+ T R+
Sbjct: 34 KHVVIVGAGMAGLSAA--------YVLAGAGHQVTVLE-ASERPGGRVRTYRNE-EAGWY 83
Query: 57 VDLGLQYITTTPD 69
+LG +
Sbjct: 84 ANLGPMRLPEKHR 96
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 30.8 bits (69), Expect = 0.74
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNV 51
KK+LIVG+G + A+ L +K + I D+ GG +R +
Sbjct: 3 SKKILIVGAGFSGAVIGRQLAEK----GHQVHIIDQRDHIGGNSYDARDSE 49
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 30.7 bits (68), Expect = 0.80
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARG-PGGRMTTSR-SNVVPNCKVDL 59
K++LIVG+GI + LL + +TI + GGR+ T P+ D
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRA----GHDVTILEANANRVGGRIKTFHAKKGEPSPFADP 100
Query: 60 GL 61
Sbjct: 101 AQ 102
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 30.3 bits (67), Expect = 1.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 1 MKKVLIVGSGITSALTSYLLRQK 23
K++ IVG+G LRQ
Sbjct: 22 KKRIGIVGAGTAGLHLGLFLRQH 44
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 29.9 bits (67), Expect = 1.3
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 17/73 (23%)
Query: 2 KKVLIVG---SGITSALTSYLLRQKLLTDL-IHITIWDKARG-PGGRMTTSRSNVVPNCK 56
V+++G +G+ SA L +T+ + AR PGGR+ T+R
Sbjct: 12 HSVVVLGGGPAGLCSA--------FELQKAGYKVTVLE-ARTRPGGRVWTARGGSEE--- 59
Query: 57 VDLGLQYITTTPD 69
DL + T
Sbjct: 60 TDLSGETQKCTFS 72
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 29.7 bits (66), Expect = 1.7
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKAR 38
K+L++G+G + + L K L I I +K
Sbjct: 2 KILVIGAGPAGLVFASQL--KQARPLWAIDIVEKND 35
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 29.9 bits (68), Expect = 1.7
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVD 58
V++VG+GI + R + LT + ++ A G GG N P + D
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLT----VRAFEAASGVGG---VWYWNRYPGARCD 71
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 28.2 bits (63), Expect = 1.8
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWD 35
+ +VG+G + + LL+ + +T+ D
Sbjct: 5 RWNICVVGAGKIGQMIAALLKT---SSNYSVTVAD 36
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 28.9 bits (65), Expect = 2.5
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37
K V+++G G+ T+Y LR L+ DL IT+
Sbjct: 2 AKHVVVIGGGVGGIATAYNLR-NLMPDL-KITLISDR 36
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 29.0 bits (65), Expect = 2.6
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 19/129 (14%)
Query: 236 RNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPLPAE-------- 287
++ P S T + N F + ++ + S AE
Sbjct: 44 KHWPK---STRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANH 100
Query: 288 TKLQTWKYSQVVDPHRDKLGFM------QFSAKPLVICIGDSYVPQS-NFDGCIHSAKQT 340
+L ++ + V + D + + A + + GD P+ G IH ++
Sbjct: 101 YELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNFPKKPFKYG-IHYSEIE 159
Query: 341 TGASMVGKH 349
+
Sbjct: 160 DFDNFNKGQ 168
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 28.8 bits (65), Expect = 2.6
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 269 RELLDLIRKMFPSWPLPAETKLQTWKYSQV-VDPHRDKLGFMQFSA-KPLVICIGDS 323
+L RK++PS PA+ Q S+ P + L + + + I D
Sbjct: 280 NTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDL 336
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 28.9 bits (63), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITI 33
++ V+IVG G +T+ L+ D I +T+
Sbjct: 2 IRSVVIVGGGTAGWMTASYLK-AAFDDRIDVTL 33
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 28.8 bits (64), Expect = 3.2
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 1 MKKVLIVGSG-ITSALTSYLLRQKLLTDLIHITIWD 35
KVLI+G+G I A+ L + + I D
Sbjct: 16 HMKVLILGAGNIGRAIAWDLKDE------FDVYIGD 45
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 28.5 bits (64), Expect = 4.0
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46
+ ++VG+G+ L L + I + +K+ GGR T
Sbjct: 2 RAVVVGAGLGGLLAGAFLARN----GHEIIVLEKSAMIGGRFTN 41
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 28.6 bits (62), Expect = 4.2
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITI 33
+ K+LIVG G + + L K L IT+
Sbjct: 25 IDKILIVGGGTAGWMAASYLG-KALQGTADITL 56
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 28.5 bits (62), Expect = 4.6
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGP 40
+K ++IVG G + + L + L +IT+ + A P
Sbjct: 5 IKNIVIVGGGTAGWMAASYLV-RALQQQANITLIESAAIP 43
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 28.2 bits (63), Expect = 4.6
Identities = 7/79 (8%), Positives = 17/79 (21%), Gaps = 2/79 (2%)
Query: 203 FGMFFDKQFER-PFDIKYFDDNEIIRYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSE 261
GM K + + RY + + + +
Sbjct: 315 LGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWG 374
Query: 262 TPRNVIERE-LLDLIRKMF 279
+ LD +++
Sbjct: 375 NALKGCDDPLFLDFLKQCL 393
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 27.5 bits (62), Expect = 5.0
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 13/49 (26%)
Query: 1 MKKVLIVGSG---ITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46
M V++VG G +++AL +L R L ++ G ++
Sbjct: 1 MWDVIVVGGGPSGLSAAL--FLARAGLKVLVL--------DGGRSKVKG 39
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide
binding, FAD, flavoprotein, oxidoreductase; HET: FAD;
1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 27.9 bits (63), Expect = 5.1
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 12/47 (25%)
Query: 3 KVLIVGSG---ITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46
V+IVG G +AL Y R L T +I PGG++T
Sbjct: 17 DVIIVGLGPAAYGAAL--YSARYMLKTLVI-------GETPGGQLTE 54
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 27.8 bits (62), Expect = 5.6
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKA 37
V+I+G+G +Y +++ L + +T+
Sbjct: 5 AHVVILGAGTGGMPAAYEMKEALGSGH-EVTLISAN 39
>2qkp_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 1.75A {Streptococcus
mutans}
Length = 151
Score = 27.0 bits (60), Expect = 6.1
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 214 PFDIKYFDDNEIIRYIS 230
P +I + + ++I +Y +
Sbjct: 29 PLEITFVNKDDIFQYYN 45
>1iqo_A Hypothetical protein MTH1880; beta-alpha, anti-parallel, calcium
binding, structural genomics, metal binding protein; NMR
{Methanothermobacter} SCOP: d.214.1.1 PDB: 1iqs_A
Length = 88
Score = 26.1 bits (57), Expect = 6.1
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 230 SFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDL 274
+ K + DE + + T + FL S + I +EL +
Sbjct: 28 GLEKKKLSDDDEIAIISIKGTQSNHVLFLSSYNSVDEIRKELEEA 72
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 27.9 bits (61), Expect = 6.8
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 43 RMTTSRSNVVPNCKVDLGLQYITTTPDFLSNHTDIYQPLLDE 84
R+ N + L +Q + P+ +S L+ +
Sbjct: 425 RLDAMSINTLFELCERLDMQLLIAAPENISPERGTTYKLVRK 466
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase,
NADP+ B reduced izoalloxazine bending, oxidoreductase;
HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 27.5 bits (62), Expect = 6.9
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 1 MKKVLIVGSG---ITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46
M I+G G +++ L Y R + ++ PGG++T
Sbjct: 1 MIDCAIIGGGPAGLSAGL--YATRGGVKNAVL-FE----KGMPGGQITG 42
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid,
thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A
{Campylobacter jejuni}
Length = 315
Score = 27.5 bits (62), Expect = 6.9
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 1 MKKVLIVGSG---ITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46
M V I+G G +++ L Y R L ++ + PGG++T+
Sbjct: 4 MLDVAIIGGGPAGLSAGL--YATRGGLKNVVMF-----EKGMPGGQITS 45
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 27.6 bits (62), Expect = 7.7
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 1 MKKVLIVGSGIT-SALTSYLLRQKLLTDLIHITIWDKARG 39
+ K+ +VG G A T + + + L+ + + + +G
Sbjct: 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKG 53
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate
cyclohydrolase...; THF, bifunctional, oxidoreductase;
HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2
PDB: 1dia_A* 1dib_A* 1dig_A*
Length = 301
Score = 27.1 bits (61), Expect = 8.4
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 263 PRNVIERELLDLIRKM--FPSW-------PLPAETKLQTWKYSQVVDPHRDKLGF 308
PR E E++ I + + PL +E + T + + P +D G
Sbjct: 73 PRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGL 127
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown
function, PSI-2, protein struct initiative; 2.43A
{Pyrococcus furiosus dsm 3638}
Length = 369
Score = 27.4 bits (60), Expect = 8.8
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 214 PFDIKYFDDNEIIRYIS 230
P D+ + D ++ +R+ S
Sbjct: 249 PVDVTFIDKDDRVRFFS 265
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 27.2 bits (61), Expect = 9.3
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 269 RELLDLIRKMFPSWPLPAETKLQTWKYSQVVDPHRDK---LGF 308
E+ L+ +P + + +L+ K +++ D + K GF
Sbjct: 257 EEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGF 299
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,591,701
Number of extensions: 329009
Number of successful extensions: 972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 959
Number of HSP's successfully gapped: 61
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.8 bits)