RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12489
(365 letters)
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 58.6 bits (140), Expect = 3e-10
Identities = 35/352 (9%), Positives = 84/352 (23%), Gaps = 26/352 (7%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQ 62
V +VG GI+ ++ LR + + + + GG + T + V+ G
Sbjct: 2 NVAVVGGGISGLAVAHHLRSRGT----DAVLLESSARLGGAVGTHA---LAGYLVEQGPN 54
Query: 63 YITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLN 122
+ +P Y + P +S +
Sbjct: 55 SFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGA 114
Query: 123 KSNIDEIC---------YNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTD 173
+ + + + +V + GI+ V +
Sbjct: 115 RLRVAGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFP 174
Query: 174 LFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEIIRYISFDN 233
+ + E H +L A + + G +I ++
Sbjct: 175 MLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQ--VLIDALAASL 232
Query: 234 VKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELL-----DLIRKMFPSWPLPAET 288
+ + + + +++ K+
Sbjct: 233 GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAA 292
Query: 289 KLQTWKYSQVVDPHRDKLGFMQFSAKPLVICIGDSYVPQSNFDGCIHSAKQT 340
+ ++ + P + IG++Y + CI +A Q
Sbjct: 293 LVAGIYNLGHLERVAAIDAAL--QRLPGLHLIGNAYKGVG-LNDCIRNAAQL 341
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 50.3 bits (118), Expect = 2e-07
Identities = 40/340 (11%), Positives = 91/340 (26%), Gaps = 19/340 (5%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQ 62
+V++VG+G++ + L + +TD + I + GGRM + V+LG
Sbjct: 2 RVIVVGAGMSGISAAKRLSEAGITD---LLILEATDHIGGRMHKTN---FAGINVELGAN 55
Query: 63 YITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFLN 122
++ N + + + K++ Y I
Sbjct: 56 WVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSV 115
Query: 123 KSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMMH 182
+ +++ + + + ++ + +
Sbjct: 116 EEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTS 175
Query: 183 IALTGAAQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEIIRYISFDNVKRNRPDE- 241
+ T D + + +Y ++ I ++ N+
Sbjct: 176 LQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVRE 235
Query: 242 ----PISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPLPAETKLQTWKYSQ 297
P V V T S + L + + P P + +
Sbjct: 236 IKYSPGGVTVKTEDNSVYSA--DYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVG 293
Query: 298 VVDPHRDKLGFMQFSAKPLVICIGDSYVPQSNFDGCIHSA 337
V D+L + V G+ ++G +H A
Sbjct: 294 VNRYEYDQL----RAPVGRVYFTGEHTSEH--YNGYVHGA 327
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 49.1 bits (115), Expect = 4e-07
Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGL 61
K+V ++G+G++ +Y L+ L ++T+++ GG++ + D G
Sbjct: 2 KRVAVIGAGVSGLAAAYKLKIHGL----NVTVFEAEGKAGGKLRSVS---QDGLIWDEGA 54
Query: 62 QYITTTPDFL 71
+T + +
Sbjct: 55 NTMTESEGDV 64
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 43.2 bits (100), Expect = 3e-05
Identities = 45/348 (12%), Positives = 100/348 (28%), Gaps = 21/348 (6%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGL 61
K V+IVG+G+ +Y+L +T+ + + PGGR+ T R+ +LG
Sbjct: 31 KHVVIVGAGMAGLSAAYVLAGAGH----QVTVLEASERPGGRVRTYRNE-EAGWYANLGP 85
Query: 62 QYITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYFL 121
+ + + + L+E E A RKK + ++KY +
Sbjct: 86 MRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKK----VGEVKKDPGLLKYPV 141
Query: 122 NKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVLSMPAPQVTDLFNRSEMM 181
S + + E++ K +E + I + + + S
Sbjct: 142 KPSEAGKSAGQLYEESLGKV-----VEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGA 196
Query: 182 HIALTGAAQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEIIRYISFDNVKRNRPDE 241
+ S + +E+ FD +++ + D + +
Sbjct: 197 VDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNA 256
Query: 242 PISVCVHTTTQYYNSFLDSETPRNVIEREL------LDLIRKMFPSWPLPAETKLQTWKY 295
+ + + + + +R + + PL + K +
Sbjct: 257 QVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPK-KAHALRS 315
Query: 296 SQVVDPHRDKLGFMQFSAKPLVICIGDSYVPQSNFDGCIHSAKQTTGA 343
+ + S + + D I S +
Sbjct: 316 VFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARD 363
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 42.5 bits (99), Expect = 4e-05
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
KK+LIVG+G + A+ L +K + I D+ GG +R + G
Sbjct: 2 SKKILIVGAGFSGAVIGRQLAEK----GHQVHIIDQRDHIGGNSYDARDSETNVMVHVYG 57
Query: 61 LQYITTTPDFLSNHTDIYQPLL 82
T + + N+ + + ++
Sbjct: 58 PHIFHTDNETVWNYVNKHAEMM 79
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 449
Score = 41.5 bits (95), Expect = 1e-04
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGL 61
KV+I+GSG++ + L+ + +T+ + GGR+ T R N DLG
Sbjct: 6 GKVIIIGSGVSGLAAARQLQSFGM----DVTLLEARDRVGGRVATFR---KGNYVADLGA 58
Query: 62 QYIT 65
+T
Sbjct: 59 MVVT 62
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase
SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 335
Score = 41.2 bits (95), Expect = 1e-04
Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 6/161 (3%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
++K+ I+G+G + +T+ L + D +T++++ PGG + + V
Sbjct: 4 IRKIAIIGAGPSGLVTAKALLAEKAFD--QVTLFERRGSPGGVWNYTS-TLSNKLPVPST 60
Query: 61 LQYITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYF 120
+TT P +Y L L ++GY + P +I +Y
Sbjct: 61 NPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHR-HTIQEYQ 119
Query: 121 LN--KSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIF 159
+ + I T + + K D + + + I
Sbjct: 120 RIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS 160
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 298
Score = 39.8 bits (92), Expect = 3e-04
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
M +IVGSG+ A+ + L++ + + +K GG T + G
Sbjct: 1 MYDYIIVGSGLFGAVCANELKKL----NKKVLVIEKRNHIGGNAYTEDCEGIQIH--KYG 54
Query: 61 LQYITTTPDF 70
T +
Sbjct: 55 AHIFHTNDKY 64
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 38.9 bits (89), Expect = 8e-04
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 4 VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQY 63
V++VG GI+ + LL L ++ + + GGR T R VDLG Y
Sbjct: 2 VVVVGGGISGMAAAKLLHDSGL----NVVVLEARDRVGGRTYTLR--NQKVKYVDLGGSY 55
Query: 64 ITTT 67
+ T
Sbjct: 56 VGPT 59
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 305
Score = 35.5 bits (80), Expect = 0.008
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRS 49
+++I+G+GI + L + + IT+ D+ +TS +
Sbjct: 3 RIVIIGAGIVGTNLADELVTRGWNN---ITVLDQGPLNMPGGSTSHA 46
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 33.5 bits (75), Expect = 0.022
Identities = 28/178 (15%), Positives = 53/178 (29%), Gaps = 19/178 (10%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
K VL++GSG + L I +T+ R S + +
Sbjct: 2 TKSVLMLGSG----FVTRPTLDVLTDSGIKVTVAC-------RTLESAKKLSAGVQHSTP 50
Query: 61 LQYITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVKYF 120
+ L + ++ L P+T + KS + H VT S +
Sbjct: 51 ISLDVNDDAALDAEVAKHDLVIS---LIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMEL 107
Query: 121 LNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFD--IVVLSMPAPQVTDLFN 176
+ T + + + + V K + D I + AP + + +
Sbjct: 108 DQAAKDA---GITVMNEIGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKIND 162
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 265
Score = 33.6 bits (75), Expect = 0.030
Identities = 6/43 (13%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43
++ +VG I+ + +LR + + +++++ P
Sbjct: 4 TDRIAVVGGSISGLTAALMLRDA----GVDVDVYERSPQPLSG 42
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 288
Score = 33.2 bits (74), Expect = 0.036
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43
+LI G+GI + L Q + +T+ + +
Sbjct: 3 DILIAGAGIGGLSCALALHQA---GIGKVTLLESSSEIRPL 40
>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase
FprA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 239
Score = 33.1 bits (74), Expect = 0.037
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDL---IHITIWDKARGPGGRMTTSRSNVVPNCKVD 58
+ IVGSG ++ + L + T + + + + P G + RS V P+
Sbjct: 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV---RSGVAPDHPKI 59
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 32.3 bits (72), Expect = 0.069
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 1 MKKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGG 42
K+V+++GSG+ ++ +L +K + I +
Sbjct: 6 QKRVVVLGSGVIGLSSALILARKGY----SVHILARDLPEDV 43
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 32.3 bits (72), Expect = 0.070
Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 18/218 (8%)
Query: 4 VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQY 63
V+++G G + + + ++ ++ + DK G ++ S +
Sbjct: 5 VIVIGGGPSGLMAAIGAAEEGA----NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEI 60
Query: 64 ITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSI-VKYFLN 122
+ P + +E ++ F + K V+ + S +
Sbjct: 61 VKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRL 120
Query: 123 KSNIDEICYNTFLETMAKTDSTNQIEVTSKEGKKGIFDIVVL-----SMPAPQVT-DLFN 176
K +I NT +ET+ + + + G+ + VV+ S+P T D +
Sbjct: 121 KDLGVKIRTNTPVETIEYENGQTKAVILQ-TGEVLETNHVVIAVGGKSVPQTGSTGDGYA 179
Query: 177 RSEMMHIALTGAAQVLLD------VEYSSRYAFGMFFD 208
+E +T + E SS++ G++F
Sbjct: 180 WAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFC 217
>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of
mitochondrial p450 systems {Cow (Bos taurus) [TaxId:
9913]}
Length = 230
Score = 31.8 bits (71), Expect = 0.081
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT 45
++ +VGSG T+ L + H+ I++K P G +
Sbjct: 2 PQICVVGSGPAGFYTAQHLLKHHSR--AHVDIYEKQLVPFGLVR 43
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 32.1 bits (72), Expect = 0.081
Identities = 7/55 (12%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLI--HITIWDKARGPGGRMTTSRSNVVPNC 55
+V+++G+G+ T+ + ++ + L + ++ P + P
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYT 56
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase
{Soil-living yeast (Trichosporon cutaneum) [TaxId:
5554]}
Length = 360
Score = 32.0 bits (71), Expect = 0.099
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 4 VLIVGSGITSALTSYLLRQKLLTDL-IHITIWDKARGP 40
VLIVG+G + + +L + + + + I DK
Sbjct: 10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 311
Score = 31.8 bits (71), Expect = 0.11
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46
V+IVG+G + +Y++ + + + I + + PGG
Sbjct: 51 SDVIIVGAGSSGLSAAYVIAKNRPD--LKVCIIESSVAPGGGSWL 93
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 150
Score = 30.8 bits (69), Expect = 0.12
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
K+++VGSG+ + + L+ QK L D++ I K G + TS +NV+ +
Sbjct: 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDI-VKNMPHGKALDTSHTNVMAYSNCKVS 61
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 142
Score = 30.4 bits (68), Expect = 0.15
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITI 33
KK+ I+G+G + T++ L K L D++ + I
Sbjct: 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDI 33
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate
hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}
Length = 292
Score = 31.5 bits (70), Expect = 0.16
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 1 MK-KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGR 43
MK +V I+G+G + L LL + I I ++
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKA----GIDNVILERQTPDYVL 40
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO
{Bacillus sp. [TaxId: 1409]}
Length = 276
Score = 30.9 bits (68), Expect = 0.21
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 1 MKK---VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRS 49
MK+ +++G GI + +Y L ++ +++ G TTS +
Sbjct: 1 MKRHYEAVVIGGGIIGSAIAYYLAKENKN----TALFESGTMGGR--TTSAA 46
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 298
Score = 29.8 bits (66), Expect = 0.44
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 3 KVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVD 58
VL+VG+G + Y LR+ + + + + A GG N P + D
Sbjct: 9 DVLVVGAGFSGLYALYRLRELGRS----VHVIETAGDVGG---VWYWNRYPGARCD 57
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 29.6 bits (65), Expect = 0.51
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 4/90 (4%)
Query: 4 VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQY 63
V++VGSG + + + +K GG + + +
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAK----VILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKK 74
Query: 64 ITTTPDFLSNHTDIYQPLLDEKLLEPFTAN 93
IT +P+ + T +++ L ++
Sbjct: 75 ITDSPELMFEDTMKGGQNINDPALVKVLSS 104
>d1iqoa_ d.214.1.1 (A:) Hypothetical protein MTH1880 {Archaeon
Methanothermobacter thermautotrophicus [TaxId: 145262]}
Length = 88
Score = 27.8 bits (62), Expect = 0.52
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 230 SFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDL 274
+ K + DE + + T + FL S + I +EL +
Sbjct: 28 GLEKKKLSDDDEIAIISIKGTQSNHVLFLSSYNSVDEIRKELEEA 72
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 297
Score = 29.4 bits (64), Expect = 0.66
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 4 VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46
V+++G+GIT + S LL + DK GG +
Sbjct: 8 VIVLGTGITECILSGLLSVDGKK----VLHIDKQDHYGGEAAS 46
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 29.3 bits (64), Expect = 0.76
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 4 VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVV 52
V++VG+G Y L ++ + + D P + +
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVK----TLLVDAFDPPHTNGSHHGDTRI 50
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 29.2 bits (64), Expect = 0.80
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 4/75 (5%)
Query: 4 VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGLQY 63
V+I+GSG + R + + +K PGG + +
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGA----KVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLG 81
Query: 64 ITTTPDFLSNHTDIY 78
I + + T
Sbjct: 82 IEDKKQIMIDDTMKG 96
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 29.0 bits (63), Expect = 0.91
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 4 VLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTT 46
V+++G+G+T + S ++ + D+ GG ++
Sbjct: 9 VIVLGTGLTECILSGIMSVNGKK----VLHMDRNPYYGGESSS 47
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma
gondii [TaxId: 5811]}
Length = 154
Score = 27.7 bits (61), Expect = 1.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITI 33
KKV ++GSG+ YL + L D++ +
Sbjct: 8 KKVAMIGSGMIGGTMGYLCALRELADVVLYDV 39
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 27.7 bits (61), Expect = 1.5
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLG 60
+V+++G+G A + L + + D I + ++++ G M + V VD+
Sbjct: 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65
>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4
{Thale cress(Arabidopsis thaliana) [TaxId: 3702]}
Length = 278
Score = 27.9 bits (61), Expect = 1.7
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVDLGL 61
V++VG+G +Y + + + I +++ PGG + V
Sbjct: 34 TDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQSVSPGG-GAWLGGQLFSAMIVRKPA 89
Query: 62 QYI 64
Sbjct: 90 HLF 92
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 192
Score = 27.2 bits (59), Expect = 2.6
Identities = 26/164 (15%), Positives = 46/164 (28%), Gaps = 17/164 (10%)
Query: 2 KKVLIVGSG---ITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCKVD 58
++ IVGSG T+A+ Y R +L L + + G TT+ +
Sbjct: 6 TRLCIVGSGPAAHTAAI--YAARAELKPLLFEGWMANDIAPGGQLTTTTD------VENF 57
Query: 59 LGLQYITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQGSSSIVK 118
G + + E T + K T + I+
Sbjct: 58 PGFPEGILGVELTDKFRKQSERFGTTIFTETVT-KVDFSSKPFKLFTDSKAILADAVILA 116
Query: 119 YFLNKSNIDEICYNTFLETMAKTDSTNQIEVTSKEGK---KGIF 159
+ FL+ + DS + + G+F
Sbjct: 117 IGAVAKGHEPATK--FLDGGVELDSDGYVVTKPGTTQTSVPGVF 158
>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase,
middle domain {Escherichia coli [TaxId: 562]}
Length = 179
Score = 26.7 bits (58), Expect = 3.7
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMT 45
K + +VG+G + + +T++D GG+
Sbjct: 44 KNLAVVGAGPAGLAFAINAAARGH----QVTLFDAHSEIGGQFN 83
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase,
L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Length = 146
Score = 26.2 bits (57), Expect = 3.8
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 2 KKVLIVGSG-ITSALTSYLLRQKLLTDLIHITI 33
+K+ I+G G + +A+ L+ Q + D + I
Sbjct: 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDA 34
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine
dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId:
9823]}
Length = 196
Score = 26.3 bits (56), Expect = 5.4
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 2 KKVLIVGSGITSALT--SYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVPNCK 56
K+ ++G+G ++++ S+L R ITI++K GG T+
Sbjct: 5 AKIALLGAGP-ASISCASFLARLGYSD----ITIFEKQEYVGGLSTSEIPQFRLPYD 56
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 205
Score = 26.1 bits (56), Expect = 5.9
Identities = 4/24 (16%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 1 MKKVLIVGS--GITSALTSYLLRQ 22
+KK+ I G+ + ++
Sbjct: 3 VKKIAIFGATGQTGLTTLAQAVQA 26
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 142
Score = 25.3 bits (55), Expect = 7.4
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHITIWDKARGPGGRMTTSRSNVVP 53
KV I+G+G A ++ + + + + + D + ++ +P
Sbjct: 2 SKVAIIGAGFVGASAAFTMALRQTAN--ELVLIDVFKEKAIGEAMDINHGLP 51
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 26.1 bits (56), Expect = 7.9
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 1 MKKVLIVGSG--ITSALTSYLLRQKLLTDLIHITIWDK 36
K +++ G I S Y+ +H+T+ DK
Sbjct: 2 FKNIIVTGGAGFIGSNFVHYVYNNH---PDVHVTVLDK 36
>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease
{Human immunodeficiency virus type 1 [TaxId: 11676]}
Length = 203
Score = 25.7 bits (57), Expect = 8.3
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 225 IIRYISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIR 276
I+ +D + I +C H + L TP N+I R LL I
Sbjct: 53 FIKVRQYDQI-------LIEICGHKAI---GTVLVGPTPVNIIGRNLLTQIG 94
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 146
Score = 25.0 bits (54), Expect = 9.6
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 2 KKVLIVGSGITSALTSYLLRQKLLTDLIHI 31
+KV++VG G + ++ + Q+ + + I
Sbjct: 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVI 35
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
salmonicolor [TaxId: 5005]}
Length = 342
Score = 25.9 bits (55), Expect = 9.8
Identities = 41/327 (12%), Positives = 87/327 (26%), Gaps = 26/327 (7%)
Query: 2 KKVLIVG-SG-ITSALTSYLLRQKL--------LTDLIHITIWDKARGPGGRMTTSRSNV 51
VL+ G +G + S + LL + L ++ A+ PG T ++
Sbjct: 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDM 71
Query: 52 VPNCKVDLGLQYITTTPDFLSNHTDIYQPLLDEKLLEPFTANIIGYKSRKKNVTHYVTPQ 111
+ D ++ S + + T N + + +V +V
Sbjct: 72 LKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131
Query: 112 GSSSIVKYFLNKSNIDEICYNTFLETMAKTDSTNQIEVT---SKEGKKGIFDIVVLSMPA 168
+ S + N I + LE++ K + + + +
Sbjct: 132 STVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFM 191
Query: 169 PQVTDLFNRSEMMHIALTGAAQVLLDVEYSSRYAFGMFFDKQFERPFDIKYFDDNEIIRY 228
+ F + ++ G S+ F+ + +
Sbjct: 192 DENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVD 251
Query: 229 ISFDNVKRNRPDEPISVCVHTTTQYYNSFLDSETPRNVIERELLDLIRKMFPSWPLPAET 288
I C+ + + +L RK++PS PA+
Sbjct: 252 IG----------LLHLGCLVLPQIERRRVYGTAGTFDW--NTVLATFRKLYPSKTFPADF 299
Query: 289 KLQTWKYSQV-VDPHRDKLGFMQFSAK 314
Q S+ P + L +
Sbjct: 300 PDQGQDLSKFDTAPSLEILKSLGRPGW 326
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0396 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,388,372
Number of extensions: 64380
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 52
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.1 bits)