Query psy1249
Match_columns 64
No_of_seqs 111 out of 420
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 20:39:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fqi_A RGS9, regulator of G-pr 99.4 9.6E-14 3.3E-18 88.3 2.9 45 1-45 102-146 (147)
2 2dlr_A RGS10, regulator of G-p 99.4 1.6E-13 5.6E-18 87.2 3.9 43 2-44 97-139 (149)
3 2jm5_A RGS18, regulator of G-p 99.4 7.1E-14 2.4E-18 89.2 2.0 42 1-42 93-134 (151)
4 2jnu_A RGS14, regulator of G-p 99.4 4E-14 1.4E-18 90.7 0.1 48 2-49 95-144 (154)
5 2ebz_A RGS12, regulator of G-p 99.4 4.8E-13 1.6E-17 85.7 4.8 45 2-46 99-145 (155)
6 2dlv_A RGS18, regulator of G-p 99.3 2.4E-13 8.1E-18 85.2 2.0 41 2-42 98-138 (140)
7 2a72_A Regulator of G-protein 99.3 1.4E-13 4.9E-18 87.3 1.0 42 2-43 95-136 (146)
8 1dk8_A Axin; alpha-helix, PI-h 99.3 3.2E-13 1.1E-17 85.2 1.8 41 3-43 103-143 (147)
9 1zv4_X RGS17, regulator of G-p 99.3 5.6E-13 1.9E-17 86.2 2.9 42 1-42 115-156 (158)
10 2oj4_A RGS3, regulator of G-pr 99.3 1.9E-13 6.6E-18 84.1 0.4 38 1-38 89-126 (127)
11 2crp_A RGS5, regulator of G-pr 99.3 5.7E-13 2E-17 84.8 2.4 42 1-42 107-148 (150)
12 2bv1_A Regulator of G-protein 99.3 5.2E-13 1.8E-17 84.6 2.0 39 2-40 104-142 (145)
13 1cmz_A Protein (GAIP (G-alpha 99.3 2.3E-13 7.8E-18 86.6 0.1 43 1-43 102-144 (152)
14 2af0_A Regulator of G-protein 99.3 9.3E-13 3.2E-17 83.3 1.1 39 2-40 106-144 (146)
15 2ihd_A RGS8, regulator of G-pr 99.2 9.2E-13 3.2E-17 84.8 0.8 39 1-39 117-155 (155)
16 3c7l_A Regulator of G-protein 99.2 4.8E-13 1.6E-17 84.2 -0.6 37 2-38 101-137 (137)
17 2ihb_B Regulator of G-protein 99.2 6.4E-13 2.2E-17 84.9 -0.2 39 2-40 113-151 (153)
18 2pbi_A Regulator of G-protein 99.2 8.3E-12 2.8E-16 92.9 3.2 45 1-45 379-423 (424)
19 1agr_E RGS4; GI-alpha-1, hydro 99.2 3.6E-12 1.2E-16 86.4 0.5 42 1-42 141-182 (205)
20 3v6i_A V-type ATP synthase sub 44.7 9.6 0.00033 24.2 1.5 33 6-38 80-112 (187)
21 1r6n_A HPV11 E2 TAD, HPV11 reg 29.6 34 0.0012 23.4 2.4 19 7-25 12-30 (211)
22 2nnu_A Regulatory protein E2; 29.1 35 0.0012 23.2 2.4 19 7-25 10-28 (205)
23 2jex_A Regulatory protein E2; 28.5 36 0.0012 23.2 2.4 19 7-25 6-24 (209)
24 1tue_B Regulatory protein E2; 27.6 38 0.0013 23.3 2.4 19 7-25 13-31 (218)
25 3v5w_A G-protein coupled recep 22.3 35 0.0012 26.6 1.5 37 3-39 140-176 (689)
No 1
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Probab=99.40 E-value=9.6e-14 Score=88.32 Aligned_cols=45 Identities=36% Similarity=0.677 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCCCC
Q psy1249 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPG 45 (64)
Q Consensus 1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~~~ 45 (64)
|..|++++||+||.+|+.+|+.|+|||||+|+.|.++++....|.
T Consensus 102 l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~~p~ 146 (147)
T 1fqi_A 102 LKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEPQ 146 (147)
T ss_dssp TTSCCTTTTHHHHHHHHHHHHHHTHHHHHTSHHHHHHHHHSCCC-
T ss_pred hcCCCHHHHHHHHHHHHHHHhhCcHHHHhcCHHHHHHHHHhhCCC
Confidence 357899999999999999999999999999999999999776553
No 2
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.6e-13 Score=87.23 Aligned_cols=43 Identities=30% Similarity=0.526 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCCC
Q psy1249 2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSP 44 (64)
Q Consensus 2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~~ 44 (64)
.+|++++||+||.+|+.+|+.|+|||||+|+.|.++++..+.+
T Consensus 97 ~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~~~ 139 (149)
T 2dlr_A 97 EEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKHKRTEEEE 139 (149)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHTTHHHHHHSHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHChHHHHhcCHHHHHHHHhhccc
Confidence 3689999999999999999999999999999999999965443
No 3
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Probab=99.39 E-value=7.1e-14 Score=89.25 Aligned_cols=42 Identities=40% Similarity=0.764 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcC
Q psy1249 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS 42 (64)
Q Consensus 1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~ 42 (64)
|+.|++++||+||.+|+.+|+.|+||||++|+.|.++++..+
T Consensus 93 l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~ 134 (151)
T 2jm5_A 93 ITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMEGRP 134 (151)
T ss_dssp TTSCCTTTTHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTSCC
T ss_pred HhCCCHHHHHHHHHHHHHHHhhChhHhHhcCHHHHHHHHHhc
Confidence 457999999999999999999999999999999999998654
No 4
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.38 E-value=4e-14 Score=90.65 Aligned_cols=48 Identities=35% Similarity=0.625 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHH--hcCCCCCCCC
Q psy1249 2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ--LDSSPGDTGG 49 (64)
Q Consensus 2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~--~~~~~~~~~~ 49 (64)
.+|++++||+||.+|+.+|+.|+||||++|+.|.++|. .++.+....+
T Consensus 95 ~~p~~~~Fd~aq~~V~~lm~~d~~~rFl~S~~y~~~l~~~~e~~p~~~~~ 144 (154)
T 2jnu_A 95 AEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYRECLLAEAEGRPLREPG 144 (154)
T ss_dssp HSCCTTTTHHHHHHHHHHHHTTHHHHHTTSTTHHHHHCSSCC--------
T ss_pred cCCCHHHHHHHHHHHHHHHHhChhHhhccCHHHHHHHHHHhcCCCCCCCc
Confidence 36899999999999999999999999999999999997 4444443333
No 5
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=4.8e-13 Score=85.69 Aligned_cols=45 Identities=36% Similarity=0.609 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHH--hcCCCCC
Q psy1249 2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ--LDSSPGD 46 (64)
Q Consensus 2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~--~~~~~~~ 46 (64)
.+|++++||+||.+|+.+|+.|+||||++|+.|.++|. .++.+..
T Consensus 99 ~~p~~~~Fd~aq~~V~~lm~~d~~~rFl~S~~y~~~l~~~~e~~~~~ 145 (155)
T 2ebz_A 99 RAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQECILAEVEGRALP 145 (155)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHHHHHTCCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHChhHHHhhCHHHHHHHHHHhcCCCCC
Confidence 36899999999999999999999999999999999988 4455443
No 6
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.4e-13 Score=85.21 Aligned_cols=41 Identities=44% Similarity=0.762 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcC
Q psy1249 2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS 42 (64)
Q Consensus 2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~ 42 (64)
+.|++++||+||.+|+.+|+.|+||||++|+.|.++++..+
T Consensus 98 ~~p~~~~F~~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~ 138 (140)
T 2dlv_A 98 TQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMSGPS 138 (140)
T ss_dssp GSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHHHCCSS
T ss_pred cCCCHHHHHHHHHHHHHHHhhCcchhhccCHHHHHHHHhcc
Confidence 46899999999999999999999999999999999998543
No 7
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A
Probab=99.34 E-value=1.4e-13 Score=87.26 Aligned_cols=42 Identities=48% Similarity=0.807 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCC
Q psy1249 2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS 43 (64)
Q Consensus 2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~ 43 (64)
.+|++++||+||.+|+.+|+.|+||||++|+.|.++++..+.
T Consensus 95 ~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~~ 136 (146)
T 2a72_A 95 KEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKK 136 (146)
T ss_dssp HSTTTTTTHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHC---
T ss_pred cCCCHHHHHHHHHHHHHHHHhChhHhHhcCHHHHHHHHHhhc
Confidence 368999999999999999999999999999999999996543
No 8
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Probab=99.32 E-value=3.2e-13 Score=85.16 Aligned_cols=41 Identities=29% Similarity=0.526 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCC
Q psy1249 3 SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS 43 (64)
Q Consensus 3 ~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~ 43 (64)
.|++++||+||.+|+.+|+.|+|||||+|+.|.++++..+.
T Consensus 103 ~~~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~~ 143 (147)
T 1dk8_A 103 LIDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTRTGSE 143 (147)
T ss_dssp CCCTTTTHHHHHHHHHHHHHTHHHHHTTSHHHHTTTTSCCC
T ss_pred CCCHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHhccc
Confidence 58899999999999999999999999999999999985543
No 9
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens}
Probab=99.32 E-value=5.6e-13 Score=86.23 Aligned_cols=42 Identities=52% Similarity=1.038 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcC
Q psy1249 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS 42 (64)
Q Consensus 1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~ 42 (64)
|.+|++++||+||.+|+.+|+.|+||||++|+.|.++++..+
T Consensus 115 l~~p~~~~Fd~aq~~V~~lm~~d~fprFl~S~~y~~~l~~~~ 156 (158)
T 1zv4_X 115 LLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSFVESTA 156 (158)
T ss_dssp TSSCCTTTTHHHHHHHHHHHHHTTHHHHTTSHHHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHHHHHHHHHChHHhHhcCHHHHHHHHHhc
Confidence 457999999999999999999999999999999999998543
No 10
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}
Probab=99.31 E-value=1.9e-13 Score=84.08 Aligned_cols=38 Identities=45% Similarity=0.748 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHH
Q psy1249 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 38 (64)
Q Consensus 1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll 38 (64)
|.+|++++||+||.+|+.+|+.|+||||++|+.|.++|
T Consensus 89 l~~~~~~~F~~aq~~v~~~m~~d~~~rFl~S~~y~~~l 126 (127)
T 2oj4_A 89 LQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLI 126 (127)
T ss_dssp TSSCCTTTTHHHHHHHHHHHHHTHHHHHHHSHHHHTTT
T ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhhhccCHHHHHHh
Confidence 35699999999999999999999999999999999876
No 11
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=5.7e-13 Score=84.78 Aligned_cols=42 Identities=45% Similarity=0.681 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcC
Q psy1249 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS 42 (64)
Q Consensus 1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~ 42 (64)
|+.|++++||+||.+|+.+|+.|+||||++|+.|.++++..+
T Consensus 107 l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~ 148 (150)
T 2crp_A 107 LVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQELISGPS 148 (150)
T ss_dssp TSSCSSGGGHHHHHHHHHHHHHTHHHHHHHSHHHHHHHSSSS
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHcc
Confidence 357999999999999999999999999999999999998543
No 12
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Probab=99.31 E-value=5.2e-13 Score=84.57 Aligned_cols=39 Identities=51% Similarity=0.838 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHh
Q psy1249 2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQL 40 (64)
Q Consensus 2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~ 40 (64)
.+|++++||+||.+|+.+|+.|+||||++|+.|.++++.
T Consensus 104 ~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~ 142 (145)
T 2bv1_A 104 KAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNLLND 142 (145)
T ss_dssp TSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhhhccCHHHHHHHHH
Confidence 468999999999999999999999999999999999984
No 13
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1
Probab=99.30 E-value=2.3e-13 Score=86.62 Aligned_cols=43 Identities=65% Similarity=1.026 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCC
Q psy1249 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS 43 (64)
Q Consensus 1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~ 43 (64)
|..|++++||+||.+|+.+|+.|+||||++|+.|.++++..+.
T Consensus 102 l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~~ 144 (152)
T 1cmz_A 102 MQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRALLPWVDS 144 (152)
T ss_dssp SSSCCTTSTHHHHHHHHHHHHHHTHHHHTTCHHHHTTC-----
T ss_pred hcCCchHHHHHHHHHHHHHHHHChHHhHhcCHHHHHHHHHhCC
Confidence 4579999999999999999999999999999999999985443
No 14
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B*
Probab=99.25 E-value=9.3e-13 Score=83.31 Aligned_cols=39 Identities=36% Similarity=0.716 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHh
Q psy1249 2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQL 40 (64)
Q Consensus 2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~ 40 (64)
+.|++++|++||.+|+.+|+.|+||||++|+.|.++++.
T Consensus 106 ~~~~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~ 144 (146)
T 2af0_A 106 QEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLCKK 144 (146)
T ss_dssp GGCCTTTTHHHHHHHHHHHHHTHHHHHHHSHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHHHhhChHHhHccCHHHHHHHhc
Confidence 468999999999999999999999999999999999874
No 15
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A
Probab=99.25 E-value=9.2e-13 Score=84.83 Aligned_cols=39 Identities=44% Similarity=0.748 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHH
Q psy1249 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39 (64)
Q Consensus 1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~ 39 (64)
|+.|++++||+||.+|+.+|+.|+||||++|+.|.++|+
T Consensus 117 l~~p~~~~Fd~aq~~V~~~m~~d~f~rFl~S~~y~~~l~ 155 (155)
T 2ihd_A 117 LQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLS 155 (155)
T ss_dssp TTSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHTTC-
T ss_pred HcCCCHHHHHHHHHHHHHHHhhChhHhhccCHHHHHHHC
Confidence 357999999999999999999999999999999998763
No 16
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=99.24 E-value=4.8e-13 Score=84.23 Aligned_cols=37 Identities=46% Similarity=0.743 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHH
Q psy1249 2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 38 (64)
Q Consensus 2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll 38 (64)
+.|++++||+||.+|+.+|+.|+||||++|+.|.++|
T Consensus 101 ~~~~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l 137 (137)
T 3c7l_A 101 QAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDLA 137 (137)
T ss_dssp HTTCTTTTHHHHHHHHHHHHTTHHHHHHTSHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHHHHHChhHhhCcCHHHHHhC
Confidence 3689999999999999999999999999999998764
No 17
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A
Probab=99.24 E-value=6.4e-13 Score=84.94 Aligned_cols=39 Identities=33% Similarity=0.557 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHh
Q psy1249 2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQL 40 (64)
Q Consensus 2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~ 40 (64)
.+|++++||+||.+|+.+|+.|+||||++|+.|.++++.
T Consensus 113 ~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~ 151 (153)
T 2ihb_B 113 EEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKHKRT 151 (153)
T ss_dssp --CCTTTTHHHHHHHHHHHHHTHHHHHTTSTTTC-----
T ss_pred cCCCHHHHHHHHHHHHHHHHHChHHhhccCHHHHHHHhc
Confidence 468999999999999999999999999999999999874
No 18
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.18 E-value=8.3e-12 Score=92.86 Aligned_cols=45 Identities=36% Similarity=0.675 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCCCC
Q psy1249 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPG 45 (64)
Q Consensus 1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~~~ 45 (64)
|.+|++++||+||.+||.||+.|+|||||+|+.|+++|+....|.
T Consensus 379 l~~P~~~lFd~AQ~~V~~lM~~DsyprFl~S~~Y~~~Lq~~~~p~ 423 (424)
T 2pbi_A 379 LRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEPQ 423 (424)
T ss_dssp TTSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHHHHHCBCCC
T ss_pred HhCCCHHHHHHHHHHHHHHHhhCchHhHhcCHHHHHHHHHccCCC
Confidence 457999999999999999999999999999999999999766553
No 19
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A
Probab=99.16 E-value=3.6e-12 Score=86.42 Aligned_cols=42 Identities=45% Similarity=0.763 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcC
Q psy1249 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS 42 (64)
Q Consensus 1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~ 42 (64)
|++|++++||+||.+|+.+|+.|+||||++|+.|.++++..+
T Consensus 141 l~~p~~~lFd~aq~~V~~lM~~d~fprFl~S~~Y~~~l~~~~ 182 (205)
T 1agr_E 141 MLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLTNPSS 182 (205)
T ss_dssp TTSCCTTTTHHHHHHHHHHHHHTHHHHHTTSHHHHTCC----
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhhHHHHhcCHHHHHHHHhhc
Confidence 457999999999999999999999999999999999998543
No 20
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=44.65 E-value=9.6 Score=24.24 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhCcccchhccHHHHHHH
Q psy1249 6 NHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 38 (64)
Q Consensus 6 ~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll 38 (64)
..+|+.|...+..++..+.|+.||..-+-.-+.
T Consensus 80 ~~v~~~a~~~L~~~~~~~~Y~~~L~~Li~ea~~ 112 (187)
T 3v6i_A 80 EEVRRRVREALEALPQKPEWPEVVRKLALEALE 112 (187)
T ss_dssp HHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHH
Confidence 368999999999999766799999886555443
No 21
>1r6n_A HPV11 E2 TAD, HPV11 regulatory protein E2, E2 protein; , transcription, replication, transcription, replication; HET: 434; 2.40A {Human papillomavirus type 11} SCOP: b.91.1.1 PDB: 1r6k_A
Probab=29.57 E-value=34 Score=23.42 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhCcc
Q psy1249 7 HTFDEAQLQIYTLMHRDSY 25 (64)
Q Consensus 7 ~~Fd~AQ~~Iy~LMe~DSY 25 (64)
.-||..|.+|..|.|+||=
T Consensus 12 ~RldalQe~ll~lyE~dS~ 30 (211)
T 1r6n_A 12 KRLDACQDQLLELYEENSI 30 (211)
T ss_dssp HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 4699999999999999963
No 22
>2nnu_A Regulatory protein E2; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Human papillomavirus type 16} SCOP: b.91.1.1 PDB: 1dto_A
Probab=29.13 E-value=35 Score=23.23 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhCcc
Q psy1249 7 HTFDEAQLQIYTLMHRDSY 25 (64)
Q Consensus 7 ~~Fd~AQ~~Iy~LMe~DSY 25 (64)
.-||..|.+|..|.|+||=
T Consensus 10 ~RldalQe~ll~lyE~ds~ 28 (205)
T 2nnu_A 10 QRLNVCQDKILTHYENDST 28 (205)
T ss_dssp HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 4589999999999999963
No 23
>2jex_A Regulatory protein E2; nuclear protein, DNA replication, phosphorylation, transcrip regulation, viral transcription factor; 2.35A {Bovine papillomavirus type 1} PDB: 2jeu_A
Probab=28.47 E-value=36 Score=23.23 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhCcc
Q psy1249 7 HTFDEAQLQIYTLMHRDSY 25 (64)
Q Consensus 7 ~~Fd~AQ~~Iy~LMe~DSY 25 (64)
.-||..|.+|..|.|+||=
T Consensus 6 ~RldalQe~ll~lyE~ds~ 24 (209)
T 2jex_A 6 ERLHVAQETQMQLIEKSSD 24 (209)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 4689999999999999963
No 24
>1tue_B Regulatory protein E2; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: b.91.1.1
Probab=27.63 E-value=38 Score=23.27 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhCcc
Q psy1249 7 HTFDEAQLQIYTLMHRDSY 25 (64)
Q Consensus 7 ~~Fd~AQ~~Iy~LMe~DSY 25 (64)
.-||..|.+|..|.|+||=
T Consensus 13 ~RldalQe~ll~lyE~dS~ 31 (218)
T 1tue_B 13 ERLSALQDKIIDHYENDSK 31 (218)
T ss_dssp HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 4599999999999999963
No 25
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=22.33 E-value=35 Score=26.64 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHH
Q psy1249 3 SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39 (64)
Q Consensus 3 ~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~ 39 (64)
.+..++|....+.|..-+..+-+..|+.|..|...++
T Consensus 140 ~~~~~lf~~~~~~~~~~l~~~~f~~~~~s~~~~r~~q 176 (689)
T 3v5w_A 140 QVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTRFCQ 176 (689)
T ss_dssp CCCTTTTHHHHHHHHHHHTTHHHHHHHHSHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHhccCcccccccChhHHHHHh
Confidence 4567899999999999999999999999999888776
Done!