RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1249
(64 letters)
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase
activating protein, heterotrimeric G-protein,
lipoprotein, palmitate, phosphoprotein; 1.89A {Mus
musculus} PDB: 3c7k_B* 2ik8_B*
Length = 137
Score = 58.9 bits (142), Expect = 2e-13
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 38
+ + + FD AQ + TLM +DSYPRF+ S Y+ LA
Sbjct: 100 LQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDLA 137
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain,
signaling protein inhibitor; 2.30A {Homo sapiens}
Length = 127
Score = 58.0 bits (140), Expect = 4e-13
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
+ S + FD AQ +I+ LM +DSYPRF+ S +Y L
Sbjct: 89 LQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDL 125
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics,
structural genomics consortium, SGC, signaling protein;
2.30A {Homo sapiens} PDB: 2v4z_B*
Length = 146
Score = 58.1 bits (140), Expect = 6e-13
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
+ ++ F AQ ++Y+LM +SYPRF+ S Y+ L +
Sbjct: 105 IQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLCK 143
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 140
Score = 57.3 bits (138), Expect = 9e-13
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS 43
+ P+ H+FD AQ ++Y LM +DSY RF+ S +Y L SS
Sbjct: 97 ITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMSGPSS 139
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 150
Score = 56.6 bits (136), Expect = 2e-12
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS 43
+V PS +FD AQ +I+ LM +DS PRF+ S Y++L SS
Sbjct: 107 LVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQELISGPSS 149
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD,
GAP, signaling protein; 1.94A {Bos taurus} SCOP:
a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Length = 147
Score = 56.6 bits (136), Expect = 2e-12
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSP 44
+ P + D AQ IY LM +DSY R++ S +YK++ P
Sbjct: 102 LKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEP 145
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural
genomics, struct genomics consortium, B-cell activation,
phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Length = 145
Score = 56.5 bits (136), Expect = 2e-12
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
+ +P+ FDEAQ IYTLM +DSYPRF+ S +Y L
Sbjct: 103 IKAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNLLN 141
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal
transduction/regulator), GTP-binding, GTPase activating
protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP:
a.91.1.1 PDB: 1ezt_A 1ezy_A
Length = 205
Score = 57.5 bits (138), Expect = 2e-12
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSSTP 56
M+ P+ FDEAQ +I+ LM +DSY RF+ S Y L S + + SS
Sbjct: 141 MLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLTNPSSCGAEKQKGAKSSAD 196
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of
G-protein signaling 7, GTPase-activ proteins (GAP),
structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A
2es0_A
Length = 146
Score = 55.4 bits (133), Expect = 6e-12
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDS 53
+ P +TF++AQ IY LM DSYPRFI S+ Y++L Q G++ S
Sbjct: 94 VKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKSGNSMDRRTS 146
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding
protein G(K) subunit A; RGS, heterotrimeric G protein,
signall complex; HET: GDP; 2.71A {Homo sapiens} PDB:
2i59_A
Length = 153
Score = 55.4 bits (133), Expect = 7e-12
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
+ P F + Q QI+ LM DSY RF+ S ++ + +
Sbjct: 112 LEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKHKR 150
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human
RGS17(Z2), regulator of G-protein signali opioid
receptor interacting protein; 2.40A {Homo sapiens}
Length = 158
Score = 55.4 bits (133), Expect = 7e-12
Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
++ P+ H +++AQLQIYTLMHRDS+PRF+NS +YK +
Sbjct: 115 LLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSFVE 153
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein
signalling domain, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 154
Score = 55.4 bits (133), Expect = 8e-12
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL--AQLDSSPGDTGGNSDSSTP 56
+ P F QLQI+ LM DSY RF+ S +Y++ A+ + P G+S +P
Sbjct: 94 LAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYRECLLAEAEGRPLREPGSSRLGSP 151
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein,
structural genomics, structura genomics consortium, SGC,
signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B*
2bt2_A
Length = 155
Score = 55.4 bits (133), Expect = 9e-12
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
+ PS FD+AQ ++++LM +DSYPRF+ S +Y L
Sbjct: 117 LQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDL 153
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP
domain, DHEX domain, GGL domain, propeller, signaling
protein; 1.95A {Mus musculus}
Length = 424
Score = 56.7 bits (136), Expect = 9e-12
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSP 44
+ P + D AQ IY LM +DSY R++ S +YK++ P
Sbjct: 379 LRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEP 422
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 149
Score = 55.0 bits (132), Expect = 1e-11
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS 43
+ P F + Q QI+ LM DSY RF+ S ++ + + +
Sbjct: 96 LEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKHKRTEEE 138
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G
protein, signaling protein regulation; NMR {Homo
sapiens} SCOP: a.91.1.1
Length = 152
Score = 54.3 bits (130), Expect = 2e-11
Identities = 30/45 (66%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ-LAQLDSSP 44
M PS HTFD+AQLQIYTLMHRDSYPRF++S Y+ L +DSS
Sbjct: 102 MQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRALLPWVDSSS 146
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein,
structural genomics, structural genomics consortium,
SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Length = 151
Score = 53.5 bits (128), Expect = 4e-11
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ-LDSSPGDTGGNSDSSTP 56
+ P+ H+FD AQ ++Y LM +DSY RF+ S +Y L + P + S S T
Sbjct: 93 ITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMEGRPQRPTNLRRRSRSFTC 149
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A
{Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Length = 147
Score = 52.0 bits (124), Expect = 1e-10
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 4 PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ-LAQLDSSP 44
FD+AQ +I M ++YP F+ S +Y + SP
Sbjct: 104 IDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTRTGSESP 145
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 155
Score = 51.6 bits (123), Expect = 2e-10
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ-LAQLDSSPGDTGGNSDSSTPA 57
+ +P F E QLQI+ LM DSY RF+ S +Y++ + S+PA
Sbjct: 98 LRAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQECILAEVEGRALPDSQQVPSSPA 155
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 3e-04
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 11 EAQLQIYTLMHRDSYPRF-INSTV 33
+A L++Y DS P I +T+
Sbjct: 26 QASLKLYA---DDSAPALAIKATM 46
Score = 30.7 bits (68), Expect = 0.013
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 15/36 (41%)
Query: 35 KQ-LAQLDSS-----PGDTGGNSDSSTPARKSSNAT 64
KQ L +L +S DS+ PA + AT
Sbjct: 19 KQALKKLQASLKLYAD-------DSA-PAL-AIKAT 45
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase
family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A
{Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A*
2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Length = 744
Score = 25.0 bits (55), Expect = 2.0
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 8/50 (16%)
Query: 12 AQLQIYTLMHRDSYPRFINSTV--YKQLAQLD--SSPGDT----GGNSDS 53
+ LM+ + Y + +SPG G NS S
Sbjct: 333 CLFPLLNLMYPSVNKEMQEGLINTYLESGFFPEWASPGHRGCMVGNNSAS 382
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Length = 565
Score = 24.7 bits (54), Expect = 2.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 37 LAQLDSSPGDTGGNSD 52
LAQL+ + GD GN
Sbjct: 11 LAQLNVTVGDFAGNVA 26
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 23.9 bits (52), Expect = 4.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 37 LAQLDSSPGDTGGNSD 52
L Q+DS+ GD GN++
Sbjct: 9 LNQIDSTVGDIAGNAE 24
>2ww2_A Mannosidase, alpha-1,2-mannosidase; hydrolase, glycoside hydrolase
family 92, BT2199; HET: SWA; 1.90A {Bacteroides
thetaiotaomicron} PDB: 2wvy_A*
Length = 737
Score = 23.4 bits (51), Expect = 5.8
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 12 AQLQIYTLMHRDSYPRFINSTV--YKQLAQLD--SSPGDTG 48
A ++TL++ + R S + Y + + +SPG G
Sbjct: 337 AVHPLFTLLYPEVSERVTQSIINAYNESGFMPEWASPGHRG 377
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.122 0.339
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 841,679
Number of extensions: 31946
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 25
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.6 bits)