RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1249
         (64 letters)



>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 128

 Score = 56.5 bits (136), Expect = 6e-13
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           M+ P+   FDEAQ +I+ LM +DSY RF+ S  Y  L
Sbjct: 91  MLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL 127


>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 128

 Score = 55.8 bits (134), Expect = 1e-12
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           M  PS HTFD+AQLQIYTLMHRDSYPRF++S  Y+ L
Sbjct: 91  MQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRAL 127


>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18,
           RGS18 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 132

 Score = 55.8 bits (134), Expect = 1e-12
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
           +  P+ H+FD AQ ++Y LM +DSY RF+ S +Y  L +
Sbjct: 91  ITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLME 129


>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16,
           RGS16 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 116

 Score = 55.4 bits (133), Expect = 1e-12
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           + + +   FD AQ +  TLM +DSYPRF+ S  Y+ L
Sbjct: 80  LQTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRDL 116


>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 138

 Score = 55.4 bits (133), Expect = 2e-12
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSP 44
           +  P  +  D AQ  IY LM +DSY R++ S +YK++      P
Sbjct: 95  LKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEP 138


>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2,
           N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 157

 Score = 54.6 bits (131), Expect = 5e-12
 Identities = 7/39 (17%), Positives = 13/39 (33%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
                   F     +I   +  D + +FI S  + +  Q
Sbjct: 110 KKQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTRFCQ 148


>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 147

 Score = 50.4 bits (120), Expect = 2e-10
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
                FD+AQ +I   M  ++YP F+ S +Y +  +
Sbjct: 104 IDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTR 139


>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB,
          C-terminal domain {Archaeon Pyrococcus furiosus [TaxId:
          2261]}
          Length = 84

 Score = 23.5 bits (51), Expect = 1.3
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 19 LMHRDSYPR 27
           M RD YP+
Sbjct: 75 FMPRDWYPK 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.122    0.339 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 202,709
Number of extensions: 6152
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 8
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.2 bits)