BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy125
         (385 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
 pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
 pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
          Length = 221

 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/198 (90%), Positives = 185/198 (93%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 135 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 194

Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 195 DPALAAQYEHDLEVAQTT 212



 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/207 (68%), Positives = 149/207 (71%), Gaps = 45/207 (21%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 135 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 194

Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 195 DPALAAQYEHDLEVAQTTALPDEDDDL 221


>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
 pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
 pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
 pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
 pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
 pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
 pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
 pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
 pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
 pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
 pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
           Crm1-ran-ranbp1
 pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
           Crm1-Ran-Ranbp1
 pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1- Ran-ranbp1
 pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
           With Crm1- Ran-ranbp1
 pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
           Complex With Crm1-ran-ranbp1
 pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(k548a)-ran-ranbp1
 pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
           With Crm1(k579a)-ran-ranbp1
 pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(k548e,k579q)-ran-ranbp1
 pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
 pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With
           Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
 pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
 pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
           Excess Crm1 Inhibitor Leptomycin B
 pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
          Length = 216

 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/198 (90%), Positives = 185/198 (93%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 190 DPALAAQYEHDLEVAQTT 207



 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/207 (68%), Positives = 149/207 (71%), Gaps = 45/207 (21%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216


>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
 pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
          Length = 204

 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/198 (90%), Positives = 185/198 (93%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 123 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 182

Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 183 DPALAAQYEHDLEVAQTT 200



 Score =  272 bits (696), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 139/202 (68%), Positives = 144/202 (71%), Gaps = 45/202 (22%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 123 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 182

Query: 359 DPQWQSRIEQDLKEAQETALPD 380
           DP   ++ E DL+ AQ TALPD
Sbjct: 183 DPALAAQYEHDLEVAQTTALPD 204


>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
 pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
          Length = 216

 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 185/198 (93%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EK+GGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 190 DPALAAQYEHDLEVAQTT 207



 Score =  278 bits (712), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 149/207 (71%), Gaps = 45/207 (21%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EK+GGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216


>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
          Length = 216

 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 184/198 (92%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGL DGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 190 DPALAAQYEHDLEVAQTT 207



 Score =  277 bits (709), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 148/207 (71%), Gaps = 45/207 (21%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGL DGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216


>pdb|1BYU|A Chain A, Canine Gdp-Ran
 pdb|1BYU|B Chain B, Canine Gdp-Ran
          Length = 216

 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 184/198 (92%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYV TLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 190 DPALAAQYEHDLEVAQTT 207



 Score =  277 bits (709), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 148/207 (71%), Gaps = 45/207 (21%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYV TLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216


>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
           The Gtp- Bound Conformation: Implications For Nuclear
           Import Complex Assembly Dynamics
 pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
           The Gtp- Bound Conformation: Implications For Nuclear
           Import Complex Assembly Dynamics
          Length = 216

 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 184/198 (92%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP L PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAPPEVVM 189

Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 190 DPALAAQYEHDLEVAQTT 207



 Score =  278 bits (710), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 148/207 (71%), Gaps = 45/207 (21%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP L PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAPPEVVM 189

Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216


>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
 pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
 pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
 pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
 pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
 pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
 pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
 pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
 pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
          Length = 221

 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/197 (90%), Positives = 184/197 (93%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VLVGDGGTGKTTFVKRHLTGE EKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           KFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135

Query: 130 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMD 189
           VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV MD
Sbjct: 136 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 195

Query: 190 PQWQSRIEQDLKEAQET 206
           P   ++ E DL+ AQ T
Sbjct: 196 PALAAQYEHDLEVAQTT 212



 Score =  277 bits (708), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 141/206 (68%), Positives = 148/206 (71%), Gaps = 45/206 (21%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VLVGDGGTGKTTFVKRHLTGE EKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           KFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                              
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135

Query: 315 ---------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMD 359
                          YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV MD
Sbjct: 136 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 195

Query: 360 PQWQSRIEQDLKEAQETALPDDDEDL 385
           P   ++ E DL+ AQ TALPD+D+DL
Sbjct: 196 PALAAQYEHDLEVAQTTALPDEDDDL 221


>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
 pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
 pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
 pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
 pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
           Snurportin1-Rangtp
 pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
           Snurportin1-Rangtp
          Length = 216

 Score =  377 bits (968), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 184/198 (92%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAG 
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 190 DPALAAQYEHDLEVAQTT 207



 Score =  276 bits (707), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 148/207 (71%), Gaps = 45/207 (21%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAG 
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216


>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
           Transport Complex
          Length = 216

 Score =  372 bits (955), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/207 (86%), Positives = 187/207 (90%), Gaps = 1/207 (0%)

Query: 1   MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
           FNVWDTAGQEKFGGLRDGYYIQ QCAII FDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120

Query: 120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
           GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA P
Sbjct: 121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXP 180

Query: 180 ALLPPEVTMDPQWQSRIEQDLKEAQET 206
           AL PPEV  DP   ++ E DL+ AQ T
Sbjct: 181 ALAPPEVVXDPALAAQYEHDLEVAQTT 207



 Score =  272 bits (695), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 139/207 (67%), Positives = 146/207 (70%), Gaps = 45/207 (21%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAII FDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA PAL PPEV  
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAPPEVVX 189

Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216


>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
          Length = 182

 Score =  346 bits (887), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 167/180 (92%), Positives = 171/180 (95%), Gaps = 1/180 (0%)

Query: 1   MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct: 3   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
           FNVWDTAG EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct: 63  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 122

Query: 120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
           GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct: 123 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182



 Score =  230 bits (587), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 119/170 (70%), Positives = 121/170 (71%), Gaps = 45/170 (26%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           KFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                              
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 132

Query: 315 ---------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 349
                          YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct: 133 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182


>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
           Export Complex
 pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
           Export Complex
 pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
           Export Complex (Crystal I)
 pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
           Export Complex (Crystal I)
 pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
           Export Complex (Crystal Ii)
 pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
           Export Complex (Crystal Ii)
          Length = 176

 Score =  345 bits (884), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 164/171 (95%), Positives = 166/171 (97%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAG 
Sbjct: 6   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 125

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct: 126 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176



 Score =  230 bits (586), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/171 (69%), Positives = 121/171 (70%), Gaps = 45/171 (26%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAG 
Sbjct: 6   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 125

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 349
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct: 126 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176


>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
           Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
          Length = 219

 Score =  344 bits (882), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 161/190 (84%), Positives = 174/190 (91%)

Query: 2   AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 61
           AA  ++P+FK VLVGDGGTGKTTFVKRHLTGEFEKKY+AT+GVEVHPL F+TN G I+F+
Sbjct: 5   AANGEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD 64

Query: 62  VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 121
           VWDTAG EKFGGLRDGYYI  QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN
Sbjct: 65  VWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 124

Query: 122 KVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 181
           KVD+K+RKVKAK+I FHRKKNLQYYDISAKSNYNFEKPFLWLARKL G+P LEFVA PAL
Sbjct: 125 KVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL 184

Query: 182 LPPEVTMDPQ 191
            PPEV +D Q
Sbjct: 185 APPEVQVDEQ 194



 Score =  234 bits (596), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 126/208 (60%), Positives = 140/208 (67%), Gaps = 46/208 (22%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           +FK VLVGDGGTGKTTFVKRHLTGEFEKKY+AT+GVEVHPL F+TN G I+F+VWDTAG 
Sbjct: 12  TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 71

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYI  QCAIIMFDVTSRITYKN                             
Sbjct: 72  EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKER 131

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKL G+P LEFVA PAL PPEV +
Sbjct: 132 KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQV 191

Query: 359 DPQWQSRIEQDLKEAQETALPD-DDEDL 385
           D Q   + +Q++++A    LPD DD DL
Sbjct: 192 DEQLMQQYQQEMEQATALPLPDEDDADL 219


>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
           Cargo (Kap60p) And Rangtp
          Length = 176

 Score =  340 bits (873), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 164/176 (93%), Positives = 168/176 (95%), Gaps = 1/176 (0%)

Query: 1   MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
           FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120

Query: 120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 175
           GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF
Sbjct: 121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 176



 Score =  225 bits (573), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 116/167 (69%), Positives = 118/167 (70%), Gaps = 45/167 (26%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEF 345
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEF
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 176


>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
 pdb|2BKU|C Chain C, Kap95p:rangtp Complex
          Length = 177

 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 164/177 (92%), Positives = 168/177 (94%), Gaps = 1/177 (0%)

Query: 1   MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYV TLGVEVHPLVFHTNRG I+
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
           FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120

Query: 120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 176
           GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV
Sbjct: 121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 177



 Score =  224 bits (571), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 116/168 (69%), Positives = 118/168 (70%), Gaps = 45/168 (26%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYV TLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 346
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFV
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 177


>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
 pdb|3ICQ|C Chain C, Karyopherin Nuclear State
          Length = 171

 Score =  320 bits (820), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 149/171 (87%), Positives = 161/171 (94%)

Query: 6   DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
           ++P+FK VLVGDGGTGKTTFVKRHLTGEFEKKY+AT+GVEVHPL F+TN G I+F+VWDT
Sbjct: 1   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60

Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDI 125
           AG EKFGGLRDGYYI  QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD+
Sbjct: 61  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 120

Query: 126 KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 176
           K+RKVKAK+I FHRKKNLQYYDISAKSNYNFEKPFLWLARKL G+P LEFV
Sbjct: 121 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 171



 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 114/168 (67%), Gaps = 45/168 (26%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           +FK VLVGDGGTGKTTFVKRHLTGEFEKKY+AT+GVEVHPL F+TN G I+F+VWDTAG 
Sbjct: 4   TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 63

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYI  QCAIIMFDVTSRITYKN                             
Sbjct: 64  EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKER 123

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 346
                           YYDISAKSNYNFEKPFLWLARKL G+P LEFV
Sbjct: 124 KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 171


>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
          Length = 172

 Score =  320 bits (819), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 149/171 (87%), Positives = 161/171 (94%)

Query: 6   DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
           ++P+FK VLVGDGGTGKTTFVKRHLTGEFEKKY+AT+GVEVHPL F+TN G I+F+VWDT
Sbjct: 2   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 61

Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDI 125
           AG EKFGGLRDGYYI  QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD+
Sbjct: 62  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 121

Query: 126 KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 176
           K+RKVKAK+I FHRKKNLQYYDISAKSNYNFEKPFLWLARKL G+P LEFV
Sbjct: 122 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 172



 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 114/168 (67%), Gaps = 45/168 (26%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           +FK VLVGDGGTGKTTFVKRHLTGEFEKKY+AT+GVEVHPL F+TN G I+F+VWDTAG 
Sbjct: 5   TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 64

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYI  QCAIIMFDVTSRITYKN                             
Sbjct: 65  EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKER 124

Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 346
                           YYDISAKSNYNFEKPFLWLARKL G+P LEFV
Sbjct: 125 KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 172


>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
           Encephalitozoon Cuniculi Bound To Gdp-Mg2+
 pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
           Encephalitozoon Cuniculi Bound To Gdp-Mg2+
          Length = 218

 Score =  174 bits (441), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 122/185 (65%), Gaps = 4/185 (2%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAG 67
           ++K  L+GDGG GKTT++ R L G FEK Y AT+G   HP+ F  ++G  I+FNVWDTAG
Sbjct: 11  TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70

Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK 126
           QEK   L+D YYI    AI+ FDVTSRIT +N+  W ++   V  N  PIV+C NK+DIK
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130

Query: 127 DRKVKAKSIVFH--RKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPP 184
           +R+  +K +V    + KN +Y++ISAK+ +NF  PFL LAR   G P+L FV+   L P 
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPT 190

Query: 185 EVTMD 189
           EV  D
Sbjct: 191 EVNYD 195



 Score =  124 bits (311), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 94/185 (50%), Gaps = 49/185 (26%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAG 282
           ++K  L+GDGG GKTT++ R L G FEK Y AT+G   HP+ F  ++G  I+FNVWDTAG
Sbjct: 11  TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70

Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------- 314
           QEK   L+D YYI    AI+ FDVTSRIT +N                            
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130

Query: 315 --------------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPP 354
                               Y++ISAK+ +NF  PFL LAR   G P+L FV+   L P 
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPT 190

Query: 355 EVTMD 359
           EV  D
Sbjct: 191 EVNYD 195


>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
          Length = 201

 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 3/165 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+ G GKT  V+R   G F     AT+GV+        N   ++  +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKDR 128
           +F  +   YY      I+ +D+T   +++ +P W R++ +   N +  VL GNK+D+ +R
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146

Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 171
           +   + ++  F   +++ Y + SAK + N EK FL LA +LI + 
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191



 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+ G GKT  V+R   G F     AT+GV+        N   ++  +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  +   YY      I+ +D+T   +++
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFR 115


>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
           With Monoprenylated Rab7 Protein
 pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
 pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
 pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
 pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
          Length = 207

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 7/166 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-----RVCENIPIVLCGNKVD 124
           +F  L   +Y    C +++FDVT+  T+K + +W  + +     R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128

Query: 125 IKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +++R+V  K      + K N+ Y++ SAK   N E+ F  +AR  +
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174



 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  L   +Y    C +++FDVT+  T+K
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFK 97


>pdb|1VG1|A Chain A, Gdp-bound Rab7
 pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
 pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
 pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
 pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
          Length = 185

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 7/166 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-----RVCENIPIVLCGNKVD 124
           +F  L   +Y    C +++FDVT+  T+K + +W  + +     R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128

Query: 125 IKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +++R+V  K      + K N+ Y++ SAK   N E+ F  +AR  +
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174



 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  L   +Y    C +++FDVT+  T+K
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFK 97


>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
 pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
 pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
 pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
 pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
          Length = 207

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-----RVCENIPIVLCGNKVD 124
           +F  L   +Y    C +++FDVT+  T+K + +W  + +     R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128

Query: 125 IKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            ++R+V  K      + K N+ Y++ SAK   N E+ F  +AR  +
Sbjct: 129 FENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174



 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  L   +Y    C +++FDVT+  T+K
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFK 97


>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
          Length = 179

 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 7/167 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLCGNKVD 124
           +F  LR  +Y    C ++ F V    +++N+ NW ++      V+  E+ P V+ GNK D
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131

Query: 125 IKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIG 169
           IK+R+V  +      K N    Y++ SAK + N    F    R+++ 
Sbjct: 132 IKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILA 178



 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLA 334
           +F  LR  +Y    C ++ F V    +++N          N++K F++ A
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL--------SNWKKEFIYYA 113


>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
 pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
 pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
 pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
 pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
          Length = 207

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAG E
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-----RVCENIPIVLCGNKVD 124
           +F  L   +Y    C +++FDVT+  T+K + +W  + +     R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128

Query: 125 IKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +++R+V  K      + K N+ Y++ SAK   N E+ F  +AR  +
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174



 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAG E
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  L   +Y    C +++FDVT+  T+K
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFK 97


>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
           Novel Antiviral Drug Target
 pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
           Novel Antiviral Drug Target
          Length = 177

 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLCGNKVD 124
           +F  LR  +Y    C ++ F V    +++N+ NW ++      V+  E+ P V+ GNK+D
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127

Query: 125 IKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIG 169
           I +R+V  +      + N    Y++ SAK   N    F    R+++ 
Sbjct: 128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174



 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLA 334
           +F  LR  +Y    C ++ F V    +++N          N++K F++ A
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL--------SNWKKEFIYYA 109


>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
 pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
 pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
 pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
 pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
          Length = 186

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI-KD 127
           +F  +   YY     A++++D+TSR TY  + NW  D  +   +NI I+LCGNK D+  D
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 128 RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R+V   ++  F ++  L + + SA +  N E+ F+  ARK++
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172



 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY     A++++D+TSR TY
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETY 98


>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
           With An Active Conformation Of Switch Ii
 pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
           With An Active Conformation Of Switch Ii
          Length = 177

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLCGNKVD 124
           +F  LR  +Y    C ++ F V    +++N+ NW ++      V+  E+ P V+ GNK+D
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129

Query: 125 IKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIG 169
           I +R+V  +      + N    Y++ SAK   N    F    R+++ 
Sbjct: 130 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 176



 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLA 334
           +F  LR  +Y    C ++ F V    +++N          N++K F++ A
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL--------SNWKKEFIYYA 111


>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
 pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
          Length = 201

 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 18/170 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VLVGD   GKT  V+R  TG F ++  +T+GV+            ++  +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           +F  +   YY     AI+ +D+T R ++ +VP+W  D+ +    NI  +L GNK D+ + 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149

Query: 129 K----VKAKSIVFHRKKNLQYYDI------SAKSNYNFEKPFLWLARKLI 168
           +     +A+S+  H       YDI      SAK + N E+ FL +A +LI
Sbjct: 150 REVSLAEAQSLAEH-------YDILCAIETSAKDSSNVEEAFLRVATELI 192



 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VLVGD   GKT  V+R  TG F ++  +T+GV+            ++  +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY     AI+ +D+T R ++
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSF 117


>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
          Length = 175

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 94/162 (58%), Gaps = 3/162 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAGQE
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI-KD 127
           +F  +   YY     A++++D+TSR TY  + NW  D  +   +NI I+LCGNK D+  D
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 131

Query: 128 RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R+V   ++  F ++  L + + SA +  + E+ F+  ARK++
Sbjct: 132 REVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 173



 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAGQE
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY     A++++D+TSR TY
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETY 99


>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
           Analogue
          Length = 180

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 8   LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLCGNKVD 124
           +F  LR  +Y    C ++ F V  R +++N+ NW ++      V+  E+ P V+ GNKVD
Sbjct: 68  RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127

Query: 125 IKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIG 169
            +DR+V  +       +N    Y + SAK + N    F    R+++ 
Sbjct: 128 KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLA 174



 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 10/117 (8%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 8   LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDP 341
           +F  LR  +Y    C ++ F V  R +++N          N++K F++ A   + DP
Sbjct: 68  RFKSLRTPFYRGADCCLLTFSVDDRQSFENL--------GNWQKEFIYYAD--VKDP 114


>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
           (Mouse)
          Length = 164

 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  T+    NW ++L R    NI I L GNK D+  +
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123

Query: 129 KVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     ++  +    +L + + SAK+  N  + F+ +A+KL
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164



 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  T+
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTF 91


>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
           C-Terminal Domain
 pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
           C-Terminal Domain
 pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
           C-Terminal Domain
 pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
           C-Terminal Domain
 pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
           C-Terminal Domain
          Length = 171

 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 128 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168



 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESF 95


>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
 pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
           Resolution
          Length = 170

 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167



 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESF 94


>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
 pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
 pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
 pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
          Length = 181

 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 3/170 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 176
           KV   +    F     + + + SAK+  N E+ F+ +A ++     LE +
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVL 179



 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + +Y N
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYAN 99


>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
 pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
           Group
          Length = 168

 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 2/160 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + K V+VG+G  GK++ ++R+  G F K Y  T+GV+        N   +R  +WDTAGQ
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           E+F  +   YY   Q  +++F  T R +++ + +W   +V    +IP  L  NK+D+ D 
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166
                 ++    ++  L++Y  S K + N  + F +LA K
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164



 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + K V+VG+G  GK++ ++R+  G F K Y  T+GV+        N   +R  +WDTAGQ
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           E+F  +   YY   Q  +++F  T R +++
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFE 94


>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
 pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
          Length = 181

 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA + D   FK +++GD G GK++ + R     F   Y+ T+GV+        N   ++ 
Sbjct: 2   MARDYDHL-FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKL 60

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
            +WDTAGQE+F  +   YY      I+++DVTS  ++ NV  W  ++ + C+++  +L G
Sbjct: 61  QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVG 120

Query: 121 NKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           NK D  +RKV     +  F  +  +Q ++ SAK N N E+ F
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162



 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK++ + R     F   Y+ T+GV+        N   ++  +WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPN 342
           +F  +   YY      I+++DVTS  ++ N      + N N +     + R L+G+ N
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD----VCRILVGNKN 123


>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
 pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
          Length = 200

 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 92/162 (56%), Gaps = 3/162 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G  GTGK+  + + +  +F++    T+GVE    V +     ++  +WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-D 127
           +F  +   YY     A++++D+TSR TY ++  W  D   +   NI ++LCGNK D+  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 128 RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R+V   ++  F ++  L + + SA +  N E+ FL  AR ++
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187



 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G  GTGK+  + + +  +F++    T+GVE    V +     ++  +WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY     A++++D+TSR TY +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNS 115


>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
           Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
 pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
           Y77
 pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
           Y77
 pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
           Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
 pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
           Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
 pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
           Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
 pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
           Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
 pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
           Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
          Length = 175

 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170



 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + +Y N
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYAN 99


>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
 pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
 pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
 pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
          Length = 170

 Score = 97.8 bits (242), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 7/165 (4%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN--VWDTA 66
           SFK VL+G+G  GKT+ V R+   +F  K++ TLG     L    N G  R N  +WDTA
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASF--LTKKLNIGGKRVNLAIWDTA 63

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDI 125
           GQE+F  L   YY     AI+++D+T   +++ V NW ++L ++  N I + + GNK+D+
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123

Query: 126 -KDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            K+R V  +    +      ++Y  SAK N   E+ FL L +++I
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168



 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN--VWDTA 281
           SFK VL+G+G  GKT+ V R+   +F  K++ TLG     L    N G  R N  +WDTA
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASF--LTKKLNIGGKRVNLAIWDTA 63

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           GQE+F  L   YY     AI+++D+T   +++
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQ 95


>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
           Gppnhp
          Length = 170

 Score = 97.8 bits (242), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167



 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESF 94


>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
 pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
          Length = 199

 Score = 97.8 bits (242), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 3/154 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L    + NI I+L GNK D++  
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K NL + + SA  + N E+ F
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 159



 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYEN 95


>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
           Gppnhp
          Length = 170

 Score = 97.8 bits (242), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167



 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESF 94


>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
           Gdp
 pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
           Gdp And Aluminum Fluoride
 pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
           Gtp
          Length = 170

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167



 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESF 94


>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
 pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
 pdb|2EFD|B Chain B, Ara7ATVPS9A
 pdb|2EFD|D Chain D, Ara7ATVPS9A
 pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
 pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
 pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
 pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
 pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
          Length = 181

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 3/160 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K VL+GD G GK++ V R +  +F +   +T+G          N   ++F +WDTAGQE+
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-R 128
           +  L   YY     AII+FDVT++ +++    W ++L  +   N+ + L GNK D+ D R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133

Query: 129 KVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 167
           KV A+    + ++N L + + SAK+  N ++ F  +AR+L
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173



 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K VL+GD G GK++ V R +  +F +   +T+G          N   ++F +WDTAGQE+
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +  L   YY     AII+FDVT++ +++
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFE 101


>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
           Gppnhp
          Length = 170

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167



 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESF 94


>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
 pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
 pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
 pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
          Length = 171

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 7/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F  +A+KL
Sbjct: 128 RAVDFQEAQS--YADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168



 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESF 95


>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
           Gppnhp
          Length = 170

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167



 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESF 94


>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
           Central Rab Binding Domain Of Rabenosyn-5
 pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
           Central Rab Binding Domain Of Rabenosyn-5
          Length = 172

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 93/162 (57%), Gaps = 3/162 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAG E
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI-KD 127
           +F  +   YY     A++++D+TSR TY  + NW  D  +   +NI I+LCGNK D+  D
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 128

Query: 128 RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R+V   ++  F ++  L + + SA +  + E+ F+  ARK++
Sbjct: 129 REVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 170



 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 51/88 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAG E
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY     A++++D+TSR TY
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETY 96


>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
           The Coiled- Coil Domain Of Lida From Legionella
           Pneumophila
          Length = 196

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177



 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 106


>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
 pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
          Length = 179

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T++ T+     W ++L R    +I I L GNK D+ ++
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++    ++  +    +L + + SAK+  N    FL +A+KL
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169



 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T++ T+
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETF 96


>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
 pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
 pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
          Length = 171

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167



 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 96


>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
 pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
          Length = 167

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  T+    NW ++L R    NI I L GNK D+  +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125

Query: 129 KVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     ++  +    +L + + SAK+  N  + F+ +A+KL
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  T+
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTF 93


>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
          Length = 166

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+           +   ++F +WDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  T+    NW ++L R    NI I L GNK D+  +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125

Query: 129 KVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     ++  +    +L + + SAK+  N  + F+ +A+KL
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+           +   ++F +WDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  T+
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTF 93


>pdb|4FMC|B Chain B, Espg-Rab1 Complex
 pdb|4FMC|D Chain D, Espg-Rab1 Complex
 pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
 pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
 pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
 pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
          Length = 171

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167



 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 96


>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
          Length = 195

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 3/170 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           + + K +++G+ G GK++ + R     F+ +  AT+GV+        +    +  +WDTA
Sbjct: 13  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV--LCGNKVD 124
           GQE+F  L   YY   Q  I+++DVT R T+  + NW  +L   C    IV  L GNK+D
Sbjct: 73  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132

Query: 125 IKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 173
            ++R+V + + + F RK +  + + SAK+    +  F  L  K+I  P L
Sbjct: 133 KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182



 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + K +++G+ G GK++ + R     F+ +  AT+GV+        +    +  +WDTAGQ
Sbjct: 15  TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           E+F  L   YY   Q  I+++DVT R T+
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTF 103


>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
          Length = 191

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 146 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186



 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 115


>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
           Zinc Finger Of Eea1
 pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
           Zinc Finger Of Eea1
          Length = 168

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 91/163 (55%), Gaps = 7/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 126 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166



 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 50/88 (56%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESF 93


>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
           With Gdp
 pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
           With Gdp
          Length = 191

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 3/154 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L    + NI I+L GNK D++  
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K  L + + SA  + N E  F
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183



 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 119


>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
           Complex With The Coiled-Coil Domain Of Lida From
           Legionella Pneumophila
          Length = 181

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK   + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177



 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK   + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 106


>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
          Length = 184

 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 3/154 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L      NI I+L GNK D++  
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K  L + + SA  + N E  F
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174



 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 110


>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
 pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
          Length = 184

 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 7/165 (4%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN--VWDTA 66
           SFK VL+G+G  GKT+ V R+   +F  K++ TL  +   L    N G  R N  +WDTA
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--QASFLTKKLNIGGKRVNLAIWDTA 77

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDI 125
           GQE+F  L   YY     AI+++D+T   +++ V NW ++L ++  N I + + GNK+D+
Sbjct: 78  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 137

Query: 126 -KDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            K+R V  +    +      ++Y  SAK N   E+ FL L +++I
Sbjct: 138 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 182



 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN--VWDTA 281
           SFK VL+G+G  GKT+ V R+   +F  K++ TL  +   L    N G  R N  +WDTA
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--QASFLTKKLNIGGKRVNLAIWDTA 77

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           GQE+F  L   YY     AI+++D+T   +++
Sbjct: 78  GQERFHALGPIYYRDSNGAILVYDITDEDSFQ 109


>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
 pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
 pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
 pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
           Nucleotide Free Rab21
          Length = 170

 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 7/165 (4%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN--VWDTA 66
           SFK VL+G+G  GKT+ V R+   +F  K++ TL  +   L    N G  R N  +WDTA
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--QASFLTKKLNIGGKRVNLAIWDTA 63

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDI 125
           GQE+F  L   YY     AI+++D+T   +++ V NW ++L ++  N I + + GNK+D+
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123

Query: 126 -KDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            K+R V  +    +      ++Y  SAK N   E+ FL L +++I
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN--VWDTA 281
           SFK VL+G+G  GKT+ V R+   +F  K++ TL  +   L    N G  R N  +WDTA
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--QASFLTKKLNIGGKRVNLAIWDTA 63

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           GQE+F  L   YY     AI+++D+T   +++
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQ 95


>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
           Rab1a
          Length = 175

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     +   Y++T+GV+            ++  +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      II++DVT R ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164
           +V    +         +++ + SAK+ YN E+ F  +A
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMA 167



 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     +   Y++T+GV+            ++  +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      II++DVT R ++ N
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDN 99


>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
          Length = 164

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 3/160 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE+
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRK 129
           F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +K
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120

Query: 130 VKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           V   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160



 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE+
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           F  +   YY      I+++DVT + ++ N
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNN 89


>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
 pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
          Length = 183

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GKT  + R     F   +++T+G++        +   I+  +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      ++++D+T+  ++ N+ NW R++      ++  ++ GNK D+ D+
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128

Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +   K +         +++ + SAK+N N E  F  LAR +
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169



 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GKT  + R     F   +++T+G++        +   I+  +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      ++++D+T+  ++ N
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDN 98


>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
 pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
          Length = 199

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F   A ++
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194



 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 123


>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
           With Gtpgammas
 pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
           With Gdp And Pi
          Length = 191

 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 3/154 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L    + NI I+L GNK D++  
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K  L + + SA  + N E  F
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183



 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 119


>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
           (Gtpase Domain) Complex
          Length = 175

 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L G K D+  +
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 129 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169



 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 98


>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
           Rab8a:gppnhp
 pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
           Rab8a:gppnhp
 pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
           Rab8a:gppnhp
 pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
           Rab8a:gppnhp
 pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
          Length = 174

 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GKT  + R     F   +++T+G++        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      ++++D+T+  ++ N+ NW R++      ++  ++ GNK D+ D+
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +   K +         +++ + SAK+N N E  F  LAR +
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167



 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GKT  + R     F   +++T+G++        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      ++++D+T+  ++ N
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDN 96


>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
 pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
 pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
          Length = 172

 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 3/154 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L    + NI I+L GNK D++  
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K  L + + SA  + N E  F
Sbjct: 129 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162



 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 98


>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
           With Gdp
          Length = 162

 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           +K V +G+   GKT+ + R     F+  Y +T+G++      + + G +R  +WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 127
           +F  L   Y      AI+++D+T+R +++N   W +D++    +++ I L GNK D+ D 
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121

Query: 128 RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           RKV   +     ++ N  +++ SAK+ +N +  F   A KL
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162



 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V +G+   GKT+ + R     F+  Y +T+G++      + + G +R  +WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  L   Y      AI+++D+T+R +++N
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFEN 91


>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
 pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
 pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
           Interacting Protein 2
          Length = 173

 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L    + NI I L GNK D++  
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K  L + + SA  + N E  F
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165



 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 101


>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
           Binding Domain
 pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
           Binding Domain
          Length = 167

 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L    + NI I L GNK D++  
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K  L + + SA  + N E  F
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159



 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 95


>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
          Length = 185

 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++  +WDTAGQE
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI-VLCGNKVDIKDR 128
           +F  +   YY      II++DVT + ++  V  W +++ R   +  + +L GNK D+KD+
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 141

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +V    +   F     + + + SA  + N E  FL +AR++
Sbjct: 142 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182



 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++  +WDTAGQE
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY      II++DVT + ++
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESF 109


>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Monoclinic Space Group
 pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Monoclinic Space Group
          Length = 200

 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 60
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVL 118
            +WDTAG E+F  L   ++      ++MFD+TS+ ++ NV NW   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132

Query: 119 CGNKVDIKD-RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKP 159
            GNK D+ D R+V  +       K  + Y++ SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175



 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 275
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAG E+F  L   ++      ++MFD+TS+ ++ N
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN 111


>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
           Prenylated Ypt1 Gtpase
 pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
          Length = 206

 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 4/170 (2%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           M +E D   FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++ 
Sbjct: 1   MNSEYDYL-FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKL 59

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI-VLC 119
            +WDTAGQE+F  +   YY      II++DVT + ++  V  W +++ R   +  + +L 
Sbjct: 60  QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV 119

Query: 120 GNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           GNK D+KD++V    +   F     + + + SA  + N E  FL +AR++
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169



 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++  +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY      II++DVT + ++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESF 96


>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
 pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
          Length = 217

 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 14/162 (8%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLVFHTNRG---------AIRF 60
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +G          +  
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVL 118
            +WDTAGQE+F  L   ++      ++MFD+TS+ ++ NV NW   L     CEN  IVL
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146

Query: 119 CGNKVDIKD-RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEK 158
            GNK D+ D R+V  +       K  + Y++ SA +  N EK
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188



 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLVFHTNRG---------AIRF 275
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +G          +  
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAGQE+F  L   ++      ++MFD+TS+ ++ N
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN 125


>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
          Length = 206

 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 4/170 (2%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           M +E D   FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++ 
Sbjct: 1   MNSEYDYL-FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKL 59

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI-VLC 119
            +WDTAGQE+F  +   YY      II++DVT + ++  V  W +++ R   +  + +L 
Sbjct: 60  QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV 119

Query: 120 GNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           GNK D+KD++V    +   F     + + + SA  + N E  FL +AR++
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169



 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++  +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY      II++DVT + ++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESF 96


>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
          Length = 170

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 6/167 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           + S K VL+G+   GK++ V R ++ +F +    T+G          N   ++F +WDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI 125
           GQE+F  L   YY   Q A++++DVT   ++    +W ++L  +  ++I I L GNK+D 
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120

Query: 126 ----KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                +RKV + +      +K L +++ SAK+  N    FL +  K+
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167



 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           S K VL+G+   GK++ V R ++ +F +    T+G          N   ++F +WDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVT 307
           E+F  L   YY   Q A++++DVT
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVT 86


>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Monoclinic Space Group
 pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Monoclinic Space Group
 pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Monoclinic Space Group
 pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Monoclinic Space Group
          Length = 220

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 14/163 (8%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 60
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVL 118
            +WDTAG E+F  L   ++      ++MFD+TS+ ++ NV NW   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132

Query: 119 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP 159
            GNK D+ D++   + ++     K  + Y++ SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175



 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 275
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAG E+F  L   ++      ++MFD+TS+ ++ N
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN 111


>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
 pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
 pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
 pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
          Length = 174

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +   I+  +WDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
            F  +   YY     A++++D+T R T+ ++  W  D  +    N+ I+L GNK D++ R
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130

Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +   K +   F R+  L + + SAK+  N E+ F+  A+++
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171



 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +   I+  +WDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            F  +   YY     A++++D+T R T+ +
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNH 100


>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
          Length = 170

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 15/172 (8%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +  FK V +G+   GKT+ + R +   F+  Y AT+G++      +     IR  +WDTA
Sbjct: 4   LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 63

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI 125
           GQE+F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+
Sbjct: 64  GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 123

Query: 126 KDRKV--------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
            D++         KAK +      N+ + + SAK+ YN ++ F  +A  L G
Sbjct: 124 ADKRQVSIEEGERKAKEL------NVMFIETSAKAGYNVKQLFRRVAAALPG 169



 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     IR  +WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITN 90


>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
          Length = 179

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     ++  F  +  L + + SAK+  N E  FL  A+K+
Sbjct: 136 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176



 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 17/154 (11%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLE 344
           +F  +   YY     A++++D+T R            S YN    +L  AR L  +PN  
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRR------------STYNHLSSWLTDARNLT-NPNTV 122

Query: 345 FVAMPALLPPEVTMDPQWQSRIEQDLKEAQETAL 378
            +    L+  +  ++ Q     E+  + A+E  L
Sbjct: 123 II----LIGNKADLEAQRDVTYEEAKQFAEENGL 152


>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
          Length = 191

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +     F+  +  T+GVE    + + +   I+  +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D++ R
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141

Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +   + +   F R+  L + + SAK+  N E+ F+  A+++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182



 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +     F+  +  T+GVE    + + +   I+  +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            F  +   YY     A++++D+T R T+ +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNH 111


>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
          Length = 223

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 15/196 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF     +T+GVE            I+  +WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY     A+I++D++   +Y+N  +W  +L     +N+ + L GNK D+   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------IGDPNLEFV 176
           +     +S  F ++  L + + SA ++ N +K F  L   +          +GD +    
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGN 193

Query: 177 AMPALLP--PEVTMDP 190
           A  A  P  P +++ P
Sbjct: 194 ANGASAPNGPTISLTP 209



 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF     +T+GVE            I+  +WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A+I++D++   +Y+N
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYEN 103


>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
           Complex With Gdp
 pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
           Complex With Gdp
 pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
           Complex With Gdp
 pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
           Complex With Gdp
 pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
           Complex With Gdp
          Length = 181

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 4/155 (2%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH-TNRGAIRFNVWDTAGQ 68
           FK VL+GD G GK+  + R    EF  +  +T+GVE         N   I+  +WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD 127
           E++  +   YY     A++++D+T + +++N+  W ++L    + NI I+L GNK D+K 
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127

Query: 128 RKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
            +V     +  + +K+ L + + SA    N E  F
Sbjct: 128 LRVINDNDATQYAKKEKLAFIETSALEATNVELAF 162



 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH-TNRGAIRFNVWDTAGQ 283
           FK VL+GD G GK+  + R    EF  +  +T+GVE         N   I+  +WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E++  +   YY     A++++D+T + +++N
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFEN 98


>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
           Gmppnp
 pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
           Gmppnp
          Length = 179

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +  FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTA
Sbjct: 12  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI 125
           GQE+F  L   Y      A++++D+T+  ++     W  D+      ++ I+L GNK D+
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 131

Query: 126 KDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKLIG 169
            D++  +      + K  N+ + + SAK+ YN ++ F  +A  L G
Sbjct: 132 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177



 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITN 98


>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
           Inactive Gdp-Bound Form
 pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
           Active Gtpgs-Bound Form
 pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
 pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
 pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
          Length = 171

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 3/162 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 128
           +F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+ D+
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122

Query: 129 KVKAKSIVFHRKKNLQ--YYDISAKSNYNFEKPFLWLARKLI 168
           +         R K L   + + SAK+ YN ++ F  +A  L+
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALL 164



 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITN 86


>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
          Length = 169

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 7/156 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY      I+M+D+T+  ++  V +W   +     +N  ++L GNK D++D 
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +V    + + +  H     ++++ SAK N N ++ F
Sbjct: 126 RVVSSERGRQLADHL--GFEFFEASAKDNINVKQTF 159



 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 54/97 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAK 321
           ++  +   YY      I+M+D+T+  ++    D S +
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ 102


>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
           Analogue
          Length = 180

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG 67
           +FK +LVGD G GKT  + R   G F    +++T+G++    V   +   ++  +WDTAG
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69

Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK 126
           QE+F  +   YY      ++++DVT++ ++ N+  W  ++    + ++ ++L GNKVD  
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129

Query: 127 DRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
             +V  +       ++  L + + SAK+  N +  F  +A++L
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172



 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG 282
           +FK +LVGD G GKT  + R   G F    +++T+G++    V   +   ++  +WDTAG
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69

Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           QE+F  +   YY      ++++DVT++ ++ N
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDN 101


>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Hexagonal Space Group
 pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Hexagonal Space Group
          Length = 195

 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 60
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVL 118
            +WDTAG E+F  L   ++      ++ FD+TS+ ++ NV NW   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132

Query: 119 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP 159
            GNK D+ D++   + ++     K  + Y++ SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175



 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 10/99 (10%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 275
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAG E+F  L   ++      ++ FD+TS+ ++ N
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLN 111


>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
           Bound Form At 1.8 Resolution
 pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
           Bound Form At 1.8 Resolution
 pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
           Bound Form At 1.8 Resolution
 pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
           Bound Form At 1.8 Resolution
          Length = 162

 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 15/167 (8%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 128
           +F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+ D+
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121

Query: 129 KV--------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +         KAK +      N+ + + SAK+ YN ++ F  +A  L
Sbjct: 122 RQVSIEEGERKAKEL------NVMFIETSAKAGYNVKQLFRRVAAAL 162



 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITN 85


>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
           With The Slp Homology Domain Of Slac2-AMELANOPHILIN
 pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
           With The Slp Homology Domain Of Slac2-AMELANOPHILIN
          Length = 203

 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 14/163 (8%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 60
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVL 118
            +WDTAG E+F  L   ++      ++ FD+TS+ ++ NV NW   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132

Query: 119 CGNKVDIKD-RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKP 159
            GNK D+ D R+V  +       K  + Y++ SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 10/99 (10%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 275
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAG E+F  L   ++      ++ FD+TS+ ++ N
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLN 111


>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
 pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
          Length = 216

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 29/208 (13%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +  FK V +G+   GKT+ + R +   F+  Y AT+G++      +     IR  +WDTA
Sbjct: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI 125
           G E+F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+
Sbjct: 71  GLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query: 126 KDRKV--------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 177
            D++         KAK +      N+ + + SAK+ YN ++ F  +A            A
Sbjct: 131 ADKRQVSIEEGERKAKEL------NVMFIETSAKAGYNVKQLFRRVA-----------AA 173

Query: 178 MPALLPPEVTMDPQWQSRIEQDLKEAQE 205
           +P +   E T D   +  I+  L++ QE
Sbjct: 174 LPGM---ESTQDRSREDMIDIKLEKPQE 198



 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     IR  +WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITN 97


>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
          Length = 196

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQ 
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ +
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 150

Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     ++  F  +  L + + SAK+  N E  FL  A+K+
Sbjct: 151 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191



 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQ 
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLE 344
           +F  +   YY     A++++D+T R            S YN    +L  AR L  +PN  
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRR------------STYNHLSSWLTDARNLT-NPNTV 137

Query: 345 FVAMPALLPPEVTMDPQWQSRIEQDLKEAQETAL 378
            +    L+  +  ++ Q     E+  + A+E  L
Sbjct: 138 II----LIGNKADLEAQRDVTYEEAKQFAEENGL 167


>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
 pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
 pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
          Length = 211

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 17/202 (8%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +  FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTA
Sbjct: 14  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI 125
           G E+F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+
Sbjct: 74  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 133

Query: 126 KDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLP 183
            D++  +      + K  N+ + + SAK+ YN ++ F  +A            A+P +  
Sbjct: 134 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA-----------AALPGM-- 180

Query: 184 PEVTMDPQWQSRIEQDLKEAQE 205
            E T D   +  I+  L++ QE
Sbjct: 181 -ESTQDRSREDMIDIKLEKPQE 201



 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITN 100


>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
          Length = 188

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 15/172 (8%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +  FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTA
Sbjct: 4   LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI 125
           G E+F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+
Sbjct: 64  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 123

Query: 126 KDRKV--------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
            D++         KAK +      N+ + + SAK+ YN ++ F  +A  L G
Sbjct: 124 ADKRQVSIEEGERKAKEL------NVMFIETSAKAGYNVKQLFRRVAAALPG 169



 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITN 90


>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
          Length = 193

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 3/154 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+ G GKT  + R    EF      T+GVE           A++  +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDI-KD 127
           ++  +   YY     A+++FD+T   TY  V  W ++L    E  I ++L GNK D+ + 
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145

Query: 128 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           R+V   ++ +F     L + + SA  + N E  F
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAF 179



 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+ G GKT  + R    EF      T+GVE           A++  +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  +   YY     A+++FD+T   TY
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTY 113


>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
           Complex With Fip2
 pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
           Complex With Fip2
          Length = 178

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 3/154 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+ G GKT  + R    EF      T+GVE           A++  +WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDI-KD 127
           ++  +   YY     A+++FD+T   TY  V  W ++L    E  I ++L GNK D+ + 
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130

Query: 128 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           R+V   ++ +F     L + + SA  + N E  F
Sbjct: 131 REVPTEEARMFAENNGLLFLETSALDSTNVELAF 164



 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+ G GKT  + R    EF      T+GVE           A++  +WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  +   YY     A+++FD+T   TY
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTY 98


>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
 pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
          Length = 199

 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           ++K VL GD   GK++F+ R    EF +   ATLGV+        +       +WDTAGQ
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 126
           E+F  +   Y+ +    ++++DVT   ++ N+  W  D++     E +PI+L GNK DI+
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW-VDMIEDAAHETVPIMLVGNKADIR 146

Query: 127 DRKVK--AKSIVFHRKKNLQ------YYDISAKSNYNFEKPFLWLARKL 167
           D       K +  H  + L       + + SAK   N  +  L LAR++
Sbjct: 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195



 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           ++K VL GD   GK++F+ R    EF +   ATLGV+        +       +WDTAGQ
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E+F  +   Y+ +    ++++DVT   ++ N
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLN 118


>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
           With Gdp
          Length = 192

 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 91/163 (55%), Gaps = 4/163 (2%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G  G GKT+ ++R     F +   +T+GV+            IR  +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIK-D 127
           +F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + D
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146

Query: 128 RKV-KAKSIVFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R++ + +   F ++   +++ + SAK N+N ++ FL L   ++
Sbjct: 147 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189



 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G  G GKT+ ++R     F +   +T+GV+            IR  +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY   +  I+++D+T + T+ +
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDD 116


>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
 pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
          Length = 182

 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 67
            K +++GD G GKT+ + R++  ++ ++Y AT+G +     +    ++ A    VWDTAG
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT-MQVWDTAG 67

Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLCGNK 122
           QE+F  L   +Y    C ++++DVT+  +++N+ +W  +      V   E  P V+ GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127

Query: 123 VDIKDRK--VKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKLI 168
           +D ++ K  V  KS     K   ++  +  SAK+  N +  F  +AR  +
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177



 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 9/131 (6%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 282
            K +++GD G GKT+ + R++  ++ ++Y AT+G +     +    ++ A    VWDTAG
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT-MQVWDTAG 67

Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNY------YDISAKSNYNFEKPFLWLARK 336
           QE+F  L   +Y    C ++++DVT+  +++N       + + A  N     PF+ L  K
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127

Query: 337 LIGDPNLEFVA 347
           +  + + + V+
Sbjct: 128 IDAEESKKIVS 138


>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
          Length = 191

 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 82/154 (53%), Gaps = 3/154 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + +   ++  +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY      I+M+D+T+  ++  V +W   +     +N  ++L GNK D+++ 
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +V    K  +   +    +++ SAK N +  + F
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177



 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 52/93 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + +   ++  +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           ++  +   YY      I+M+D+T+  ++    D
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQD 116


>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
           Imidotriphosphate
 pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
           Imidotriphosphate
          Length = 170

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 2/158 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++D+T   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123

Query: 129 KVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
            V A +     ++  + + + SAK++ N  + F  LA+
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161



 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++D+T   T+ N
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTN 93


>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
           Domain, And Phosphate Complex
          Length = 174

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 2/158 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 127

Query: 129 KVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
            V A +     ++  + + + SAK++ N  + F  LA+
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 165



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT   T+ N
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTN 97


>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
 pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
 pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
          Length = 185

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 11/164 (6%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R  T EF  +  +T+GVE            I+  +WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY     A+I++D++   +Y+N  +W  +L     +N+ + L GNK D+   
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +     +AK+  F  +  + + + SA ++ N +K F    R+LI
Sbjct: 131 RAVPTDEAKN--FAMENQMLFTETSALNSDNVDKAF----RELI 168



 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R  T EF  +  +T+GVE            I+  +WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A+I++D++   +Y+N
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYEN 100


>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
          Length = 189

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 3/154 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+G+   GKT+F+ R+    F   +V+T+G++      + +   I+  +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY      ++M+D+ ++ ++  V +W   +     +N  ++L GNK D++D 
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142

Query: 129 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPF 160
           +V           +L  ++++ SAK N N ++ F
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176



 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 52/93 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+G+   GKT+F+ R+    F   +V+T+G++      + +   I+  +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           ++  +   YY      ++M+D+ ++ ++    D
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQD 115


>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
          Length = 213

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 2/158 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 140

Query: 129 KVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
            V A +     ++  + + + SAK++ N  + F  LA+
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178



 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT   T+ N
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTN 110


>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
           Structure Of The Small G Protein Rab3a Complexed With
           The Effector Domain Of Rabphilin-3a
          Length = 203

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 82/156 (52%), Gaps = 7/156 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY      I+ +D+T+  ++  V +W   +     +N  ++L GNK D +D 
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +V    + + +  H     ++++ SAK N N ++ F
Sbjct: 129 RVVSSERGRQLADHL--GFEFFEASAKDNINVKQTF 162



 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 52/97 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAK 321
           ++  +   YY      I+ +D+T+  ++    D S +
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQ 105


>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
 pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
 pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
 pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
          Length = 170

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK 129
           F  +   YY      I+++D+T   T+ N+  W + +     +   ++L GNK D + R 
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124

Query: 130 VKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           V A +     ++  + + + SAK++ N  + F  LA+
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           F  +   YY      I+++D+T   T+ N
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTN 93


>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
 pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
          Length = 195

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 14/159 (8%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP--LVFHTN-------RGA-IRF 60
           K + +GD G GKT+ + ++  G+F  K++ T+G++     +V+  N       RG  I  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVL 118
            +WDTAG E+F  L   ++      +++FD+T+  ++ NV NW   L      EN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132

Query: 119 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYN 155
           CGNK D++D++   + ++     K  + Y++ SA +  N
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN 171



 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP--LVFHTN-------RGA-IRF 275
           K + +GD G GKT+ + ++  G+F  K++ T+G++     +V+  N       RG  I  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAG E+F  L   ++      +++FD+T+  ++ N
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLN 111


>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
           Gtpase Sec4p
          Length = 170

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK 129
           F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D + R 
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124

Query: 130 VKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           V A +     ++  + + + SAK++ N  + F  LA+
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           F  +   YY      I+++DVT   T+ N
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTN 93


>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
           Novel Type Of Action Of A Bacterial Exoenzyme
 pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
           Novel Type Of Action Of A Bacterial Exoenzyme
          Length = 187

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 5/161 (3%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 78

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDR 128
           +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D++D+
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138

Query: 129 KVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKL 167
           +  +     +R +  N+ Y + SAK+  N +K F  L R++
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179



 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 78

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD-----ISAKSNYNFEKPFLWLARK 336
           +  +RD Y+  G+  + +F +T   ++    D     +  K + N   PFL +  K
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLVGNK 132


>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
           Domain Complex
 pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
           Domain Complex
          Length = 175

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 5/161 (3%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 66

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDR 128
           +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D++D+
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126

Query: 129 KVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKL 167
           +  +     +R +  N+ Y + SAK+  N +K F  L R++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167



 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 66

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD-----ISAKSNYNFEKPFLWLARK 336
           +  +RD Y+  G+  + +F +T   ++    D     +  K + N   PFL +  K
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLVGNK 120


>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
 pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
 pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
 pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
 pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
          Length = 188

 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 5   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 63

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q   ++I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 64  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 123

Query: 126 KDRK 129
           +D K
Sbjct: 124 RDDK 127



 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 7   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 65

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q   ++I F + S  +++N
Sbjct: 66  EDYDRLRPLSYPQTDVSLICFSLVSPASFEN 96


>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
           And Gtpase Activating Protein Sptp Bound To Rac1
          Length = 184

 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q   ++I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119

Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123



 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q   ++I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFEN 92


>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
           Botulinum C3 Exoenzyme By Rala Gtpase
          Length = 206

 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 5/161 (3%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 74

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDR 128
           +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D++D+
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134

Query: 129 KVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKL 167
           +  +     +R +  N+ Y + SAK+  N +K F  L R++
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 74

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD-----ISAKSNYNFEKPFLWLARK 336
           +  +RD Y+  G+  + +F +T   ++    D     +  K + N   PFL +  K
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLVGNK 128


>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
           Novel Binding Sites That Are Also Present In Ras And Rap
 pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
           Novel Binding Sites That Are Also Present In Ras And Rap
 pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
           Novel Binding Sites That Are Also Present In Ras And Rap
 pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
           Novel Binding Sites That Are Also Present In Ras And Rap
 pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
           Novel Binding Sites That Are Also Present In Ras And Rap
 pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
           Novel Binding Sites That Are Also Present In Ras And Rap
          Length = 168

 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 64

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDR 128
           +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D++D+
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 129 KVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKL 167
           +  +     +R    N+ Y + SAK+  N +K F  L R++
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165



 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 64

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD-----ISAKSNYNFEKPFLWLARK 336
           +  +RD Y+  G+  + +F +T   ++    D     +  K + N   PFL +  K
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLVGNK 118


>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
           Rhod
          Length = 214

 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 9/146 (6%)

Query: 1   MAAEMDMP---SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA 57
           MA E   P   S K VLVGDGG GKT+ +     G F + Y  T+  E + +        
Sbjct: 23  MAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKP 81

Query: 58  IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPI 116
           +  ++WDTAGQ+ +  LR  +Y      ++ FDVTS  ++ N+ N W+ ++   C+ +PI
Sbjct: 82  VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPI 141

Query: 117 VLCGNKVDIKDRKVKAKSIVFHRKKN 142
           ++ G K D++    K KS+V   ++N
Sbjct: 142 IVVGCKTDLR----KDKSLVNKLRRN 163



 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           S K VLVGDGG GKT+ +     G F + Y  T+  E + +        +  ++WDTAGQ
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           + +  LR  +Y      ++ FDVTS  ++ N ++
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFN 126


>pdb|1MH1|A Chain A, Small G-Protein
          Length = 186

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q   ++I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 128 RK 129
            K
Sbjct: 124 DK 125



 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q   ++I F + S  +++N
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFEN 94


>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
           2
          Length = 178

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119

Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123



 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92


>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
 pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
          Length = 192

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q   ++I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query: 128 RK 129
            K
Sbjct: 122 DK 123



 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q   ++I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFEN 92


>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
           Vav1 Exchange Factor
          Length = 184

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119

Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92


>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
 pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
          Length = 196

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 20  MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 78

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 79  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 138

Query: 126 KDRK 129
           +D K
Sbjct: 139 RDDK 142



 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 22  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 80

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 111


>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
           Nucleotide Exchange Region Of Tiam1
 pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
           Nucleotide Exchange Region Of Tiam1
 pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
           Nucleotide Exchange Region Of Tiam1
 pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
           Nucleotide Exchange Region Of Tiam1
 pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
           Nucleotide- Free Rac1
 pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
           Exchange By The T-Cell Essential Vav1
 pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
           Exchange By The T-Cell Essential Vav1
          Length = 177

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119

Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123



 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92


>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
           In Complex With Rac1
 pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
           In Complex With Rac1
 pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
           In Complex With Rac1
 pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
           Plexin-B1 In Complex With Rac1
          Length = 184

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119

Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123



 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92


>pdb|4FMC|F Chain F, Espg-Rab1 Complex
          Length = 117

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE+F 
Sbjct: 2   LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61

Query: 73  GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 125
            +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+
Sbjct: 62  TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115



 Score = 63.9 bits (154), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 48/87 (55%)

Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
           +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE+F 
Sbjct: 2   LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61

Query: 288 GLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +   YY      I+++DVT + ++ N
Sbjct: 62  TITSSYYRGAHGIIVVYDVTDQESFNN 88


>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
           Arfaptin (P21)
 pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
           Arfaptin (P41)
          Length = 192

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119

Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92


>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
          Length = 192

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +Y+NV   W  ++   C + PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 119

Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123



 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +Y+N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYEN 92


>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
 pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
          Length = 167

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 6/166 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V++G GG GK+    + + G F +KY  T+       V   +       + DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           G E+F  +RD Y   GQ   +++ +T++ T+ ++ +    ++RV   +++P++L GNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 119

Query: 125 IKDRKVKAKSI---VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++D +V  K     +  +  N  + + SAKS  N  + F  L R++
Sbjct: 120 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V++G GG GK+    + + G F +KY  T+       V   +       + DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTE 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           +F  +RD Y   GQ   +++ +T++ T+ +  D+
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96


>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
           Complex With The Active Rala
 pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
           Complex With The Active Rala
 pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
           Complex With The Active Rala
 pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
           Complex With The Active Rala
          Length = 175

 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLED 66

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDR 128
           +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D++D+
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126

Query: 129 KVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKL 167
           +  +     +R +  N+ Y + SAK+  N +K F  L R++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167



 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLED 66

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD-----ISAKSNYNFEKPFLWLARK 336
           +  +RD Y+  G+  + +F +T   ++    D     +  K + N   PFL +  K
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLVGNK 120


>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
           Binding-Domain Of C-Raf1 Kinase (Rafrbd)
          Length = 167

 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 6/166 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V++G GG GK+    + + G F +KY  T+       V   +       + DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           G E+F  +RD Y   GQ   +++ +T++ T+ ++ +    ++RV   E++P++L GNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119

Query: 125 IKDRKVKAKSIVFHRKK---NLQYYDISAKSNYNFEKPFLWLARKL 167
           ++D +V  K    +  +   N  + + SAKS  N  + F  L R++
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165



 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V++G GG GK+    + + G F +KY  T+       V   +       + DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTE 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           +F  +RD Y   GQ   +++ +T++ T+ +  D+
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96


>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
           The Pseudomonas Aeruginosa Exos Toxin And Human Rac
 pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
           The Pseudomonas Aeruginosa Exos Toxin And Human Rac
          Length = 176

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query: 128 RK 129
            K
Sbjct: 122 DK 123



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92


>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
 pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
 pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
          Length = 187

 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 13  AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 71

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 131

Query: 128 RK 129
            K
Sbjct: 132 DK 133



 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 13  AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 71

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 102


>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
 pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
          Length = 204

 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148

Query: 128 RK 129
            K
Sbjct: 149 DK 150



 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 119


>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
          Length = 169

 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +   K  L+GD G GK++ V R +   F+     T+G               +F +WDTA
Sbjct: 3   LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDI 125
           GQE+F  L   YY     AII++D+T   T+  + NW R+L +    +I + + GNK D+
Sbjct: 63  GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122

Query: 126 KD-RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
            D R+V  +    +    +  + + SAK+  N  + F+ ++R++
Sbjct: 123 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166



 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K  L+GD G GK++ V R +   F+     T+G               +F +WDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  L   YY     AII++D+T   T+ 
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFS 94


>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
           With Rac1 (T17n Mutant)
 pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
           With Rac1 (T17n Mutant)
          Length = 184

 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GK   +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 8   MQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 66

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 67  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 126

Query: 126 KDRK 129
           +D K
Sbjct: 127 RDDK 130



 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GK   +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 10  AIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 68

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 99


>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
          Length = 180

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 4   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 62

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           G E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 63  GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 122

Query: 126 KDRK 129
           +D K
Sbjct: 123 RDDK 126



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG 
Sbjct: 6   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 64

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 95


>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
           Gdp And Chloride
 pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
           Gdp And Chloride
 pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
           Domain Of Human P21-Activated Kinase 1 (Pak1)
          Length = 179

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 2   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 60

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C + PI+L G K+D+
Sbjct: 61  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL 120

Query: 126 KDRK 129
           +D K
Sbjct: 121 RDDK 124



 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 62

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 93


>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
           Complexed With Gppnhp And The Ras-Binding-Domain Of
           Human C-Raf1, Residues 51-131
 pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
          Length = 167

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V++G GG GK+    + + G F  +Y  T+       V   +       + DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           G E+F  +RD Y   GQ   +++ +T++ T+ ++ +    ++RV   E++P++L GNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119

Query: 125 IKDRKVKAKSIVFHRKK---NLQYYDISAKSNYNFEKPFLWLARKL 167
           ++D +V  K    +  +   N  + + SAKS  N  + F  L R++
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165



 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V++G GG GK+    + + G F  +Y  T+       V   +       + DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTE 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           +F  +RD Y   GQ   +++ +T++ T+ +  D+
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96


>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
           Arfaptin
 pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
          Length = 192

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           G E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119

Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123



 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92


>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
           Gpp(Nh)p.
 pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
           Gpp(Nh)p
          Length = 180

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 2   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 60

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C + PI+L G K+D+
Sbjct: 61  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL 120

Query: 126 KDRK 129
           +D K
Sbjct: 121 RDDK 124



 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 62

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 93


>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
 pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
          Length = 192

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C + PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL 119

Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123



 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92


>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
          Length = 189

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 8/166 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD   GKT    R   G F  +  AT+GV+        +   I+  +WDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 70  KF-GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 126
           +F   +   YY      + ++D+T+  ++ ++P W  +  +  +  +IP +L GNK D++
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140

Query: 127 DRKVKAKSIV--FHRKKNLQYYDISAKS---NYNFEKPFLWLARKL 167
                   +   F    ++  ++ SAK+   N + E  F+ LA KL
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186



 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD   GKT    R   G F  +  AT+GV+        +   I+  +WDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 285 KF-GGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F   +   YY      + ++D+T+  ++ +
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHS 111


>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
 pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
          Length = 204

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T     +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148

Query: 128 RK 129
            K
Sbjct: 149 DK 150



 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T     +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 119


>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
           Analogue
          Length = 192

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K  L+GD G GK++ V R +   F+     T+G               +F +WDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD- 127
           +F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK D+ D 
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143

Query: 128 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R+V  K    +         + SAK+  N E+ F  ++R++
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K  L+GD G GK++ V R +   F+     T+G               +F +WDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  L   YY     A+I++D+T + ++
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSF 111


>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
          Length = 192

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 61

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query: 128 RK 129
            K
Sbjct: 122 DK 123



 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92


>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
          Length = 169

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V++G  G GK+    + + G F +KY  T+       V   +       + DTA
Sbjct: 3   MREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTA 61

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           G E+F  +RD Y   GQ   +++ +T++ T+ ++ +    ++RV   +++P++L GNK D
Sbjct: 62  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 121

Query: 125 IKDRKVKAKSI---VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++D +V  K     +  +  N  + + SAKS  N  + F  L R++
Sbjct: 122 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167



 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V++G  G GK+    + + G F +KY  T+       V   +       + DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTE 64

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           +F  +RD Y   GQ   +++ +T++ T+ +  D+
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 98


>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
 pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
 pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
 pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
          Length = 184

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGD   GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 8   MQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTA 66

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +Y+NV   W  ++   C + PI+L G K+D+
Sbjct: 67  GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 126

Query: 126 KDRK 129
           +D K
Sbjct: 127 RDDK 130



 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGD   GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 10  AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 68

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +Y+N
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASYEN 99


>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
 pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
          Length = 204

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG 
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 88

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148

Query: 128 RK 129
            K
Sbjct: 149 DK 150



 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG 
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 88

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 119


>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
          Length = 182

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQE 67

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 128
            +  LR   Y      I+ F + S+ +Y+NV   W  +L      +PIVL G K+D++D 
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127

Query: 129 K 129
           K
Sbjct: 128 K 128



 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQE 67

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARKL-IGDP 341
            +  LR   Y      I+ F + S+ +Y+N     I    +Y    P + +  KL + D 
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127

Query: 342 NLEFVAMPALLP 353
              F+  P  +P
Sbjct: 128 KQFFIDHPGAVP 139


>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
           The Minimal Rab Binding Domain Of Rabenosyn-5
          Length = 170

 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K  L+GD G GK++ + R +   F+     T+G               +F +WDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD- 127
           +F  L   YY     AII++D+T   T+  + NW R+L +    +I + + GNK D+ D 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 128 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R+V  +    +    +  + + SAK+  N  + F+ ++R++
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167



 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K  L+GD G GK++ + R +   F+     T+G               +F +WDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  L   YY     AII++D+T   T+ 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFS 95


>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
 pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
 pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
          Length = 185

 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGD   GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 9   AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 67

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +Y+NV   W  ++   C + PI+L G K+D++D
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 127

Query: 128 RK 129
            K
Sbjct: 128 DK 129



 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGD   GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 9   AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 67

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +Y+N
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYEN 98


>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
           The First Ras Superfamily Gtpase From The Plant Kingdom
 pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
           The First Ras Superfamily Gtpase From The Plant Kingdom
 pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
           The First Ras Superfamily Gtpase From The Plant Kingdom
 pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
           The First Ras Superfamily Gtpase From The Plant Kingdom
          Length = 212

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 3/130 (2%)

Query: 2   AAEMDMPSF-KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
            + M +  F KCV VGDG  GKT  +  + + +F   Y+ T+       V   +   +  
Sbjct: 1   GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNL 59

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLC 119
            +WDTAGQE +  LR   Y      ++ F + S+ +Y+NV   W  +L R   N+PIVL 
Sbjct: 60  GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLV 119

Query: 120 GNKVDIKDRK 129
           G K+D++D K
Sbjct: 120 GTKLDLRDDK 129



 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +  LR   Y      ++ F + S+ +Y+N
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYEN 98


>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
           Gtpase Bound To Gdp And Alf3
          Length = 198

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 8/166 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD   GKT    R   G F  +  AT+GV+        +   I+  +WDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89

Query: 70  KF-GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 126
           +F   +   YY      + ++D T+  ++ ++P W  +  +  +  +IP +L GNK D++
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149

Query: 127 DRKVKAKSIV--FHRKKNLQYYDISAKS---NYNFEKPFLWLARKL 167
                   +   F    +   ++ SAK+   N + E  F  LA KL
Sbjct: 150 SAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195



 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD   GKT    R   G F  +  AT+GV+        +   I+  +WDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89

Query: 285 KF-GGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F   +   YY      + ++D T+  ++ +
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHS 120


>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
          Length = 178

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLED 67

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKD 127
           +  +RD Y+  G+  +++F +T   ++     +   ++RV    + IP+++ GNK D+++
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127

Query: 128 RKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R+     +A+S     +  +QY + SAK+  N +K F  L R++
Sbjct: 128 RRQVPVEEARSKA--EEWGVQYVETSAKTRANVDKVFFDLMREI 169



 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLED 67

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +  +RD Y+  G+  +++F +T   ++
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESF 94


>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
           Transforming And A Nontransforming Gly-12 Mutant Of
           P21-H-Ras
          Length = 166

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 4/164 (2%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTA
Sbjct: 1   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+VL GNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119

Query: 125 IKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQE 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
           ++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
           In Its Active Conformation: Significance For Effector
           Protein Binding
          Length = 174

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLED 63

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKD 127
           +  +RD Y+  G+  +++F +T   ++     +   ++RV    + IP+++ GNK D+++
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123

Query: 128 RKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R+     +A+S     +  +QY + SAK+  N +K F  L R++
Sbjct: 124 RRQVPVEEARSKA--EEWGVQYVETSAKTRANVDKVFFDLMREI 165



 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLED 63

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +  +RD Y+  G+  +++F +T   ++
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESF 90


>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
           Gtp
 pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
           Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
           Manganese
 pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
           Laue Method: Improvement Of Crystal Quality And
           Monitoring Of The Gtpase Reaction At Different Time
           Points
 pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
           Laue Method: Improvement Of Crystal Quality And
           Monitoring Of The Gtpase Reaction At Different Time
           Points
 pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
           Transforming And A Nontransforming Glycine-12 Mutant Of
           P21h-Ras
          Length = 166

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 4/164 (2%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+VL GNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119

Query: 125 IKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQE 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
           ++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
           Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
           Magnesium
 pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
           Laue Method: Improvement Of Crystal Quality And
           Monitoring Of The Gtpase Reaction At Different Time
           Points
          Length = 166

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 4/164 (2%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+VL GNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119

Query: 125 IKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 120 LAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQE 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
           ++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
 pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
          Length = 180

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 128
            +  LR   Y      I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125

Query: 129 K 129
           K
Sbjct: 126 K 126



 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARKL-IGDP 341
            +  LR   Y      I+ F + S+ +Y+N     I    +Y    P + +  KL + D 
Sbjct: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125

Query: 342 NLEFVAMPALLP 353
              F+  P  +P
Sbjct: 126 KQFFIDHPGAVP 137


>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
           C450m Mutant
          Length = 332

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 128
            +  LR   Y Q    +I F + S  ++ +V   W+ ++   C N PI+L G K+D++D 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274

Query: 129 K 129
           K
Sbjct: 275 K 275



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +  LR   Y Q    +I F + S  ++ +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHH 244


>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
           Molecular Basis For Their Inability To Function As
           Signal Switch Molecules
          Length = 166

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 4/164 (2%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTA
Sbjct: 1   MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+VL GNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119

Query: 125 IKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQE 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
           ++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
           C450a Mutant
          Length = 332

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 128
            +  LR   Y Q    +I F + S  ++ +V   W+ ++   C N PI+L G K+D++D 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274

Query: 129 K 129
           K
Sbjct: 275 K 275



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +  LR   Y Q    +I F + S  ++ +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHH 244


>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
           Wildtype
          Length = 332

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 128
            +  LR   Y Q    +I F + S  ++ +V   W+ ++   C N PI+L G K+D++D 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274

Query: 129 K 129
           K
Sbjct: 275 K 275



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +  LR   Y Q    +I F + S  ++ +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHH 244


>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
           Sopb In Complex With Cdc42
          Length = 193

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 11  MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 69

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 70  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 129

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 130 RDDPSTIEKLAKNKQKPI 147



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 13  TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 71

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 72  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 131

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 132 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 163


>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
           Complex With The Placental Isoform Of Human Cdc42
 pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
           Complex With The Placental Isoform Of Human Cdc42
 pdb|1KZG|B Chain B, Dbscdc42(Y889f)
 pdb|1KZG|D Chain D, Dbscdc42(Y889f)
 pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
           Complex With Cdc42
 pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
           Complex With Cdc42
          Length = 188

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
           Binding Domain Of Wasp
          Length = 179

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
          Length = 194

 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 8   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 66

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 67  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 126

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 127 RDDPSTIEKLAKNKQKPI 144



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 10  TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 68

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 128

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 129 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 160


>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
 pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
           Comparisons Of The High Resolution Structures For Cdc42
           Bound To The Active And Catalytically Compromised Forms
           Of The Cdc42-gap.
 pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
           Adenylylated Cdc42
 pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
           Adenylylated Cdc42
          Length = 191

 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
           Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
          Length = 192

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 2   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 60

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 61  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 120

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 121 RDDPSTIEKLAKNKQKPI 138



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 4   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 62

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 63  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 122

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 123 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 154


>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
           Required
 pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
           Required
          Length = 189

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
           Complex With The Multifunctional Regulator Rhogdi
          Length = 191

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 4   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 62

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 63  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 122

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 123 RDDPSTIEKLAKNKQKPI 140



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 6   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 64

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 125 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 156


>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
           Derived From P-21 Activated Kinase, Nmr, 20 Structures
          Length = 178

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
           The Salmonella Typhimurium Sope Toxin And Human Cdc42
 pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
           The Salmonella Typhimurium Sope Toxin And Human Cdc42
          Length = 180

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 3   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 61

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 62  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 121

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 122 RDDPSTIEKLAKNKQKPI 139



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 5   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 63

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 124 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 155


>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
 pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
 pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
          Length = 190

 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 3   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 61

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 62  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 121

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 122 RDDPSTIEKLAKNKQKPI 139



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 5   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 63

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 124 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 155


>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
           Cdc42-Gmppnp
 pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
           Cdc42-Gmppnp
          Length = 178

 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
           Inhibit Sos- Mediated Activation
          Length = 170

 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTA
Sbjct: 2   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTA 60

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  +++++ ++   + RV   E++P+VL GNK D
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD 120

Query: 125 IKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +  R V  K      R   + + + SAK+    +  F  L R++
Sbjct: 121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQE 63

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
           ++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 95


>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
 pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
          Length = 194

 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 4   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 62

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 63  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 122

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 123 RDDPSTIEKLAKNKQKPI 140



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 6   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 64

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 125 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 156


>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
 pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
          Length = 180

 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 15/165 (9%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV VGDG  GKT  +  +    F   YV T+       V   +   +   +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 128
            +  LR   Y      ++ F + S+ +Y+N+   W  +L      IPIVL G K+D++D 
Sbjct: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDD 125

Query: 129 KV------KAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
           K        A SI   + + L       +Y + S+K+  N +  F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170



 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV VGDG  GKT  +  +    F   YV T+       V   +   +   +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            +  LR   Y      ++ F + S+ +Y+N +
Sbjct: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENIH 97


>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
           Pfb0500c
          Length = 208

 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 39/198 (19%)

Query: 8   PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV----------------- 50
            S+K VL+G+   GK++ V R     F +    T+G      V                 
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65

Query: 51  --------------------FHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90
                               ++ N   I+F++WDTAGQE++  +   YY    CAI++FD
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125

Query: 91  VTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDIS 149
           +++  T      W   L ++  N  I+L  NK+D    +V    +  + +  NL +   S
Sbjct: 126 ISNSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTS 184

Query: 150 AKSNYNFEKPFLWLARKL 167
           AK+  N +  F  LA ++
Sbjct: 185 AKTGTNIKNIFYMLAEEI 202



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 37/125 (29%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV------------------ 265
           S+K VL+G+   GK++ V R     F +    T+G      V                  
Sbjct: 7   SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66

Query: 266 -------------------FHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 306
                              ++ N   I+F++WDTAGQE++  +   YY    CAI++FD+
Sbjct: 67  NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126

Query: 307 TSRIT 311
           ++  T
Sbjct: 127 SNSNT 131


>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
          Length = 201

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           KCVLVGDG  GKT+ V  + T  +  +Y+ T   +    V   +   +R  + DTAGQ++
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK-DR 128
           F  LR   Y      ++ F V S  +++NV   W  ++   C   PI+L G + D++ D 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140

Query: 129 KV--------------KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           KV              +A  ++    K   Y + SA +  N ++ F
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           KCVLVGDG  GKT+ V  + T  +  +Y+ T   +    V   +   +R  + DTAGQ++
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           F  LR   Y      ++ F V S  +++N
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQN 109


>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
          Length = 182

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 65

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D++D
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125

Query: 128 RKVKAKSIVFHRKKNL 143
                + +  +++K +
Sbjct: 126 DPSTIEKLAKNKQKPI 141



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 65

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 126 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 157


>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
 pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
 pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
          Length = 177

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D++D
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 128 RKVKAKSIVFHRKKNL 143
                + +  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
 pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
          Length = 190

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAGQ 61

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D++D
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 128 RKVKAKSIVFHRKKNL 143
                + +  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
           And Nucleotide Exchange Domains Of Intersectin
 pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
           And Nucleotide Exchange Domains Of Intersectin
          Length = 178

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            + DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137



 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            + DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
           Domain Of Arhgap20
          Length = 180

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123



 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 94


>pdb|2KB0|A Chain A, Cdc42(T35a)
          Length = 178

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV  +  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137



 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV  +  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
           Saccharomyces Cerevisiae
 pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
           Saccharomyces Cerevisiae
 pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
           Saccharomyces Cerevisiae
          Length = 188

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 17/171 (9%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +  G+F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD-- 127
           +  LR   Y      +I F +    + +NV   W  +++  C+ +PI+L G KVD+++  
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDP 130

Query: 128 ------RKVKAKSIVFHRKKNLQ-------YYDISAKSNYNFEKPFLWLAR 165
                 R+   + +     +++        YY+ SAK+ Y   + F    R
Sbjct: 131 QTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181



 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +  G+F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70

Query: 286 FGGLRDGYYIQGQCAIIMFDV 306
           +  LR   Y      +I F +
Sbjct: 71  YDRLRPLSYPDSNVVLICFSI 91


>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
           Fragment Of Pdzrhogef
 pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
           Fragment Of Pdzrhogef
 pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
           N-Terminal Regulatory Elements In Complex With Human
           Rhoa
 pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
           N-Terminal Regulatory Elements In Complex With Human
           Rhoa
          Length = 178

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 121



 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 92


>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
          Length = 177

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 121



 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 92


>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
           With Cdc42 (T17n Mutant)
          Length = 195

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GK   +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 8   MQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 66

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 67  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 126

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 127 RDDPSTIEKLAKNKQKPI 144



 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GK   +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 10  TIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 68

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 128

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 129 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 160


>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
          Length = 178

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +   +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137



 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +   +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
           Self-Activating Gtpase
 pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
           Self-Activating Gtpase
 pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
           Self-Activating Gtpase
 pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
           Self-Activating Gtpase
          Length = 203

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 21/143 (14%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 3   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 61

Query: 67  GQEKFGGLRDGYYIQ-------------------GQCAIIMFDVTSRITYKNV-PNWHRD 106
           GQE +  LR   Y Q                       +I F + S  +++NV   W+ +
Sbjct: 62  GQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPE 121

Query: 107 LVRVCENIPIVLCGNKVDIKDRK 129
           +   C N PI+L G K+D++D K
Sbjct: 122 VRHHCPNTPIILVGTKLDLRDDK 144



 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           E +  LR   Y Q        D+TSR   K   D+
Sbjct: 64  EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADV 98


>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
 pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
           Activated Kinase
          Length = 184

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           G E +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137



 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAG 
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGL 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
           And Inhibit Sos-Mediated Nucleotide Exchange Activity
 pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
           And Inhibit Sos-Mediated Nucleotide Exchange Activity
 pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
           And Inhibit Sos-Mediated Nucleotide Exchange Activity
 pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
           And Inhibit Sos-Mediated Nucleotide Exchange Activity
          Length = 189

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 4/161 (2%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQE 63

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 127
           ++  +RD Y   G+  + +F + +  +++++ ++   + RV   E++P+VL GNK D+  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

Query: 128 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R V  K      R   + + + SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQE 63

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
           ++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 95


>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
 pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
          Length = 190

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123



 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 94


>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
 pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
          Length = 193

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123



 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 94


>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
           And Rho-Binding Domain Of Human Rocki
 pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
           And Rho-Binding Domain Of Human Rocki
          Length = 183

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 125



 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 96


>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
           (Complex A)
 pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
           (Complex A)
 pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
           (Complex A)
 pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
           (Complex A)
 pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
           (Complex B)
 pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
           (Complex B)
 pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
           C)
          Length = 185

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 127



 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 98


>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
           DOMAINS WITH GTP- Gamma-S Activated Rhoa
 pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
           DOMAINS WITH GTP- Gamma-S Activated Rhoa
          Length = 182

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 124



 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 95


>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
           Gmppnp
 pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
           Gmppnp
          Length = 193

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIK 126
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122



 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 94


>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
           (Rras2) In The Gdp Bound State
 pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
           (Rras2) In The Gdp Bound State
          Length = 172

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 4/113 (3%)

Query: 57  AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENI 114
           A R ++ DTAGQE+FG +R+ Y   G+  +++F VT R +++ +  + R ++RV   +  
Sbjct: 52  AARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEF 111

Query: 115 PIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           P++L GNK D+  ++   + +     R+  + Y + SAK   N ++ F  L R
Sbjct: 112 PMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR 164



 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%)

Query: 272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
           A R ++ DTAGQE+FG +R+ Y   G+  +++F VT R +++  Y
Sbjct: 52  AARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIY 96


>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
           Domain Of The Cell Polarity Protein, Par6
 pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
           Domain Of The Cell Polarity Protein, Par6
          Length = 195

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 5   MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWD 64
           M + + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++D
Sbjct: 3   MGIQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 61

Query: 65  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKV 123
           TAG E +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++
Sbjct: 62  TAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 121

Query: 124 DIKDRKVKAKSIVFHRKKNL 143
           D++D     + +  +++K +
Sbjct: 122 DLRDDPSTIEKLAKNKQKPI 141



 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAG 
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGL 65

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 126 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 157


>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
           Domains Of Dbs In Complex With Rhoa
 pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
           Domains Of Dbs In Complex With Rhoa
 pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
           Domains Of Dbs In Complex With Rhoa
 pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
           Domains Of Dbs In Complex With Rhoa
          Length = 192

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 125



 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 96


>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
 pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
          Length = 193

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123



 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 94


>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
           Form
 pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
           Form
          Length = 191

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGD   GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119

Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137



 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGD   GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153


>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
           LEUKEMIA-Associated Rhogef In Complex With Rhoa
 pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
           LEUKEMIA-Associated Rhogef In Complex With Rhoa
 pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
           LEUKEMIA-Associated Rhogef In Complex With Rhoa
 pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
           LEUKEMIA-Associated Rhogef In Complex With Rhoa
 pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
           Rhoa
 pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
           Rhoa
          Length = 196

 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126



 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 97


>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
           With Rhogdi In Its Active Gppnhp-Bound Form
          Length = 195

 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 125



 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 96


>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
 pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
 pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
          Length = 201

 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 126
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142



 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 114


>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
          Length = 207

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      EF + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 126
           +  LR   Y      ++ F V S  + +N+P  W  ++   C N+PI+L  NK D++
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142



 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      EF + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F V S  + +N
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLEN 114


>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
           In The Gdp- Bound State
          Length = 181

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 64/113 (56%), Gaps = 4/113 (3%)

Query: 59  RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPI 116
           R ++ DTAGQE+FG +R+ Y   G   +++F +  R ++  V      ++RV   ++ P+
Sbjct: 58  RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV 117

Query: 117 VLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           VL GNK D++ ++   ++++  F    ++ Y++ SAK   N ++ F  L R +
Sbjct: 118 VLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170



 Score = 38.1 bits (87), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 25/39 (64%)

Query: 274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           R ++ DTAGQE+FG +R+ Y   G   +++F +  R ++
Sbjct: 58  RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSF 96


>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
           Mutant (Q63l)
          Length = 184

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126



 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 97


>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
           Effector Domain Of The Protein Kinase PknPRK1
 pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
          Length = 182

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 124



 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGD   GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 95


>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
           (Gdp-3'p- Bound) Form
 pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
           (Gppnhp-Bound) Form
          Length = 178

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 89/171 (52%), Gaps = 9/171 (5%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWD 64
           M   K V++GDG +GKT+         F K+Y  T+G++  +  +    N   +   +WD
Sbjct: 4   MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLN-VTLQIWD 62

Query: 65  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENI---PIV-LCG 120
             GQ   G + D Y    Q  ++++D+T+  +++N+ +W+  + +V E     P+V L G
Sbjct: 63  IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG 122

Query: 121 NKVDIKD-RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
           NK+D++  R +K  K + F ++     + +SAK+  +    F  +A +++G
Sbjct: 123 NKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173



 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 282
            K V++GDG +GKT+         F K+Y  T+G++  +  +    N   +   +WD  G
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLN-VTLQIWDIGG 65

Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           Q   G + D Y    Q  ++++D+T+  +++N  D
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED 100


>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
 pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
          Length = 194

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 4/120 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQ 68
            KCV+VGDG  GKT  +  +    F ++YV T  V  H  V  T  G      ++DTAGQ
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT--VFDHYAVSVTVGGKQYLLGLYDTAGQ 76

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y      +I F V +  +++NV   W  +L     N+P +L G ++D++D
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136



 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQ 283
            KCV+VGDG  GKT  +  +    F ++YV T  V  H  V  T  G      ++DTAGQ
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT--VFDHYAVSVTVGGKQYLLGLYDTAGQ 76

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARKL 337
           E +  LR   Y      +I F V +  +++N  +  +     Y    PFL +  ++
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQI 132


>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
           Gdp
          Length = 180

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +      +F   YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRK 129
           +   R   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++ +
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125

Query: 130 VKAKSIVFHRKKNLQ 144
             A+ +   +++ ++
Sbjct: 126 HTARELAKMKQEPVK 140



 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGD   GKT  +      +F   YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +   R   Y      ++ F + S  + +N
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLEN 94


>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
           Inorganic Phosphate
 pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
           Inorganic Phosphate
          Length = 172

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           ++  + G GG GK++ V R + G F + Y+ T+  + +  V   ++      + DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIK 126
           +F  ++     +G   I+++ +TSR + + +   +  +  +    E+IPI+L GNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 127 -DRKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163
             R+V+ +++    R     + + SAK N+N ++ F  L
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161



 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           ++  + G GG GK++ V R + G F + Y+ T+  + +  V   ++      + DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           +F  ++     +G   I+++ +TSR
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSR 87


>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
          Length = 201

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 126
           +  LR   Y      ++ F + S  + +N+P  W  ++     N+PI+L GNK D++
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLR 142



 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 114


>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
 pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
          Length = 173

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 60  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 119

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 120 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 60  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 101


>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
           (State 1)
          Length = 171

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 58  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 118 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 58  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 99


>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
           (State 1)
          Length = 171

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 58  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 118 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 58  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 99


>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
 pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
 pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
           Protein
          Length = 172

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 59  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 118

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 119 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169



 Score = 31.2 bits (69), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 59  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 100


>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
           Molecular Basis For Their Inability To Function As
           Signal Switch Molecules
          Length = 166

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
 pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
 pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
 pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
          Length = 166

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
 pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
 pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
 pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
 pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
 pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-specific Nucleotide Exchange Factor Sos
 pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-specific Nucleotide Exchange Factor Sos
 pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-specific Nucleotide Exchange Factor Sos
 pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
 pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
 pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
 pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
 pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
 pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
           C- Terminal Verkuerzten Menschlichen Krebsproteins
           P21-H-Ras
 pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
           Determined By Heteronuclear Three And Four Dimensional
           Nmr Spectroscopy
 pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
           Determined By Heteronuclear Three And Four Dimensional
           Nmr Spectroscopy
 pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
           Determined By Heteronuclear Three And Four Dimensional
           Nmr Spectroscopy
 pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
           Of The Oncogene Product P21h-Ras Complexed With Caged
           Gtp And Mant Dgppnhp
 pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
           Of The Oncogene Product P21h-Ras Complexed With Caged
           Gtp And Mant Dgppnhp
 pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
           Of The Oncogene Product P21h-Ras Complexed With Caged
           Gtp And Mant Dgppnhp
 pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
           Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
           For The Mechanism Of Gtp Hydrolysis
 pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
 pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
 pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
 pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
           A
 pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
 pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
 pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
 pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
 pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
           Of 10 In Mscs Set
 pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
 pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
 pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
           Mscs Set
 pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
 pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
 pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
 pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
 pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
           Set
 pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
 pdb|3TGP|A Chain A, Room Temperature H-Ras
 pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
 pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
 pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
 pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
          Length = 166

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
           Gtp
 pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
 pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
 pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
           Free Mutant) Complex
 pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
 pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
          Length = 166

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
 pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
 pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
 pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
 pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
 pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
          Length = 166

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
          Length = 166

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 25/40 (62%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92


>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
           Isoleucine
          Length = 166

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
           (T35s) Complexed With Guanosine-5'-[b,G-Imido]
           Triphosphate
 pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
           (T35s) Complexed With Guanosine-5'-[b,G-Imido]
           Triphosphate
 pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
           (T35s) Complexed With Guanosine-5'-[b,G-Imido]
           Triphosphate
          Length = 166

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With Gdp (2)
          Length = 166

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
           Differences Between Active And Inactive Forms Of
           Protooncogenic Ras Proteins
          Length = 189

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.6 bits (70), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With Gppnhp
 pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With S-Caged Gtp
 pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With Gtp
 pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With Gtp (2)
 pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With R-Caged Gtp
 pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With Gdp
          Length = 166

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
           Ras
 pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
           Ras
 pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
           Ras
          Length = 166

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
           Differences Between Active And Inactive Forms Of
           Protooncogenic Ras Proteins
 pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
           Differences Between Active And Inactive Forms Of
           Protooncogenic Ras Proteins
 pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
           Differences Between Active And Inactive Forms Of
           Protooncogenic Ras Proteins
 pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
           Differences Between Active And Inactive Forms Of
           Protooncogenic Ras Proteins
 pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
           Cell-Free Synthesis
 pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
           Structure
 pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
           Catalytic Domains Of Normal Ras Protein And An Oncogenic
           Mutant Complexed With Gsp
          Length = 171

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
           Catalytic Domains Of Normal Ras Protein And An Oncogenic
           Mutant Complexed With Gsp
          Length = 171

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
 pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
 pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
          Length = 183

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 6/165 (3%)

Query: 6   DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
           ++P++K V+VGDGG GK+    +     F  +Y  T+           N+ AI  +V DT
Sbjct: 15  NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAI-LDVLDT 73

Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKV 123
           AGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ ++RV   E+ P++L  NKV
Sbjct: 74  AGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 133

Query: 124 DIKD-RKV-KAKSIVFHRKKNLQYYDISAKS-NYNFEKPFLWLAR 165
           D+   RKV + +      K N+ Y + SAK    N +K F  L R
Sbjct: 134 DLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178



 Score = 37.0 bits (84), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 269 NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           N+ AI  +V DTAGQE+F  +R+ Y   G   +I++ VT + ++++
Sbjct: 63  NQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107


>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
           The Ras-interacting Domain Of Ralgds
 pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
           The Ras-interacting Domain Of Ralgds
          Length = 167

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
           (Type 1)
 pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
           (Type 2)
          Length = 183

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 54  NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-- 111
           N+ AI  +V DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ ++RV   
Sbjct: 63  NQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 121

Query: 112 ENIPIVLCGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKS-NYNFEKPFLWLAR 165
           E+ P++L  NKVD+   RKV + +      K N+ Y + SAK    N +K F  L R
Sbjct: 122 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178



 Score = 37.0 bits (84), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 269 NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           N+ AI  +V DTAGQE+F  +R+ Y   G   +I++ VT + ++++
Sbjct: 63  NQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107


>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
           Costello Syndrome, Bound To Mg-Gdp
          Length = 166

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R+ 
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREF 163



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 25/40 (62%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92


>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
 pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
          Length = 183

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 54  NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-- 111
           N+ AI  +V DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ ++RV   
Sbjct: 63  NQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 121

Query: 112 ENIPIVLCGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKS-NYNFEKPFLWLAR 165
           E+ P++L  NKVD+   RKV + +      K N+ Y + SAK    N +K F  L R
Sbjct: 122 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178



 Score = 37.0 bits (84), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 269 NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           N+ AI  +V DTAGQE+F  +R+ Y   G   +I++ VT + ++++
Sbjct: 63  NQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107


>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
 pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
          Length = 178

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 54  NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-- 111
           N+ AI  +V DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ ++RV   
Sbjct: 58  NQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 116

Query: 112 ENIPIVLCGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKS-NYNFEKPFLWLAR 165
           E+ P++L  NKVD+   RKV + +      K N+ Y + SAK    N +K F  L R
Sbjct: 117 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173



 Score = 37.0 bits (84), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 269 NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           N+ AI  +V DTAGQE+F  +R+ Y   G   +I++ VT + ++++
Sbjct: 58  NQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 102


>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
 pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
 pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
           Magnesium
 pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
           Magnesium
          Length = 194

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + K V+VGDG  GKT  +     GE    YV T+      ++ + N   I  ++WDTAGQ
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQ 81

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 126
           E++  LR   Y      ++ F V +R ++ N+   W  ++    +    VL G KVD++
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140



 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + K V+VGDG  GKT  +     GE    YV T+      ++ + N   I  ++WDTAGQ
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQ 81

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E++  LR   Y      ++ F V +R ++ N
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDN 112


>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
           Costello Syndrome, Bound To Mg-Gdp
          Length = 166

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GN+ D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNRCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
           Ehrho1-Gtpgammas
          Length = 188

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + K V+VGDG  GKT  +     GE    YV T+      ++ + N   I  ++WDTAGQ
Sbjct: 22  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQ 80

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 126
           E++  LR   Y      ++ F V +R ++ N+   W  ++    +    VL G KVD++
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 139



 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + K V+VGDG  GKT  +     GE    YV T+      ++ + N   I  ++WDTAGQ
Sbjct: 22  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQ 80

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E++  LR   Y      ++ F V +R ++ N
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDN 111


>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
           Inhibit Sos- Mediated Activation
 pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
           Inhibit Sos- Mediated Activation
          Length = 170

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++ ++   + RV   E++P+V
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V  K      R   + + + SAK+    +  F  L R++
Sbjct: 114 LVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164



 Score = 31.6 bits (70), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 95


>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
           Inhibit Sos- Mediated Activation
 pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
           Inhibit Sos- Mediated Activation
 pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
           Inhibit Sos- Mediated Activation
          Length = 170

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++ ++   + RV   E++P+V
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V  K      R   + + + SAK+    +  F  L R++
Sbjct: 114 LVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164



 Score = 31.6 bits (70), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 95


>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
           Molecular Basis For Their Inability To Function As
           Signal Switch Molecules
          Length = 166

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DT GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 25/42 (59%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DT GQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
 pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
 pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-Specific Nucleotide Exchange Factor Sos
 pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-Specific Nucleotide Exchange Factor Sos
 pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-Specific Nucleotide Exchange Factor Sos
 pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-Specific Nucleotide Exchange Factor Sos
          Length = 166

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DT GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 25/42 (59%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DT GQE++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-specific Nucleotide Exchange Factor Sos
 pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
          Length = 166

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE+   +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 25/42 (59%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAGQE+   +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
          Length = 166

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG+E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 26/42 (61%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAG+E++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
           Mutant
          Length = 166

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTA QE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/40 (25%), Positives = 24/40 (60%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            ++ DTA QE++  +RD Y   G+  + +F + +  ++++
Sbjct: 53  LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92


>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
           Molecular Basis For Their Inability To Function As
           Signal Switch Molecules
          Length = 166

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 29.3 bits (64), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 25/42 (59%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAG E++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
          Length = 167

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTA QE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/40 (25%), Positives = 24/40 (60%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            ++ DTA QE++  +RD Y   G+  + +F + +  ++++
Sbjct: 53  LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92


>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
           (State 1)
          Length = 171

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 58  LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 118 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168



 Score = 28.1 bits (61), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 25/42 (59%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAG E++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 58  LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 99


>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
          Length = 166

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 28.1 bits (61), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 10/40 (25%), Positives = 24/40 (60%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            ++ DTAG E++  +RD Y   G+  + +F + +  ++++
Sbjct: 53  LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92


>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
           Molecular Basis For Their Inability To Function As
           Signal Switch Molecules
 pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
 pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
          Length = 166

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 28.1 bits (61), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 25/42 (59%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAG E++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
          Length = 166

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 28.1 bits (61), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 25/42 (59%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAG E++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
          Length = 166

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163



 Score = 28.1 bits (61), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 25/42 (59%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAG E++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 53  LDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94


>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
 pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
 pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
 pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
 pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
 pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
          Length = 187

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++ ++   + RV   E++P+V
Sbjct: 71  LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 130

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V  K      R   + + + SAK+    +  F  L R++
Sbjct: 131 LVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181



 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 25/42 (59%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            ++ DTAG E++  +RD Y   G+  + +F + +  ++++ +
Sbjct: 71  LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 112


>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
 pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
           Form
          Length = 166

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163


>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
           Inactive Gdp Bound State
 pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
           Inactive Gdp Bound State
 pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
           Inactive Gdp Bound State
 pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
           Inactive Gdp Bound State
          Length = 199

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 22  KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ 81
           K++ V R + G F   Y+ T+  + +  V   ++      + DT G  +F  ++     +
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79

Query: 82  GQCAIIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKVKAKSI-VF 137
           G   I++F VTS+ + + +   ++ +V++    E+IP++L GNK D   R+V  +     
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV 139

Query: 138 HRKKNLQYYDISAKSNYNFEKPFLWL 163
            ++    + + SAK NYN ++ F  L
Sbjct: 140 AQEWKCAFMETSAKMNYNVKELFQEL 165



 Score = 35.0 bits (79), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 237 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ 296
           K++ V R + G F   Y+ T+  + +  V   ++      + DT G  +F  ++     +
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79

Query: 297 GQCAIIMFDVTSR 309
           G   I++F VTS+
Sbjct: 80  GHAFILVFSVTSK 92


>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
          Length = 190

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++ ++  +   + RV   +++P+V
Sbjct: 71  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130

Query: 118 LCGNKVDIKDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V  K      +   + + + SAK+    E  F  L R++
Sbjct: 131 LVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181



 Score = 31.2 bits (69), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDIS 319
            ++ DTAGQE++  +RD Y   G+  + +F + +    K++ DI+
Sbjct: 71  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNS---KSFADIN 112


>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
           Complex Structure
 pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
           Complex Structure
          Length = 200

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 143

Query: 130 VKAKSIVFHRKKNLQY 145
                +  HR+  + Y
Sbjct: 144 STLVELSNHRQTPVSY 159



 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83

Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      +I FD++
Sbjct: 84  YDNVRPLSYPDSDAVLICFDIS 105


>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
           Constitutively Activated Small G Protein
 pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
           Constitutively Activated Small G Protein
          Length = 205

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148

Query: 130 VKAKSIVFHRKKNLQY 145
                +  HR+  + Y
Sbjct: 149 STLVELSNHRQTPVSY 164



 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88

Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      +I FD++
Sbjct: 89  YDNVRPLSYPDSDAVLICFDIS 110


>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
          Length = 184

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127

Query: 130 VKAKSIVFHRKKNLQY 145
                +  HR+  + Y
Sbjct: 128 STLVELSNHRQTPVSY 143



 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      +I FD++
Sbjct: 68  YDNVRPLSYPDSDAVLICFDIS 89


>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
           Gtp
 pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
           Gtp
 pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
 pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
          Length = 167

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 22  KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ 81
           K+    + +TG F +KY  T+  + +      +       + DTAG E+F  +RD Y   
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74

Query: 82  GQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDI 125
           GQ  I+++ + ++ +++++      ++RV   E +P++L GNKVD+
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120



 Score = 35.8 bits (81), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 237 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ 296
           K+    + +TG F +KY  T+  + +      +       + DTAG E+F  +RD Y   
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74

Query: 297 GQCAIIMFDVTSRITYKN 314
           GQ  I+++ + ++ ++++
Sbjct: 75  GQGFILVYSLVNQQSFQD 92


>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
           Complex To Mg.Gdp
          Length = 192

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 18/176 (10%)

Query: 4   EMDMPSFKCVLVGDGGTGKTT----FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           E  M  ++ VL+G+ G GK+T    F   H + + + + +     E   +V   +   I 
Sbjct: 1   EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL--VRVCENIPIV 117
            ++W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118

Query: 118 LCGNKVD-IKDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D ++ R+V     +A ++VF    + ++ + SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170



 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 225 FKCVLVGDGGTGKTT----FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 280
           ++ VL+G+ G GK+T    F   H + + + + +     E   +V   +   I  ++W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66

Query: 281 AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
            G+ ++  L D     G   +I++ +T R +++
Sbjct: 67  KGENEW--LHDHXMQVGDAYLIVYSITDRASFE 97


>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
           Complex To Mg.Gdp
          Length = 192

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 4   EMDMPSFKCVLVGDGGTGKTT----FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           E  M  ++ VL+G+ G GK+T    F   H + + + + +     E   +V   +   I 
Sbjct: 1   EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL--VRVCENIPIV 117
            ++W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118

Query: 118 LCGNKVD-IKDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D ++ R+V     +A ++VF  K    + + SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXK----FIETSAAVQHNVKELFEGIVRQV 170



 Score = 28.9 bits (63), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 225 FKCVLVGDGGTGKTT----FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 280
           ++ VL+G+ G GK+T    F   H + + + + +     E   +V   +   I  ++W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66

Query: 281 AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
            G+ ++  L D     G   +I++ +T R +++
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFE 97


>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
          Length = 186

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 13/162 (8%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            +  LVG   +GKTTFV    +G+F +  + T+G  +  +     +G +   +WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTIKIWDIGGQP 78

Query: 70  KFGGLRDGYYIQGQCAII-MFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 126
           +F  + +  Y +G  AI+ M D   R   +   N   +L+     + IP+++ GNK D+ 
Sbjct: 79  RFRSMWE-RYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLP 137

Query: 127 D-----RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163
           +     + ++  ++   + + +  Y IS K   N +    WL
Sbjct: 138 NALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179



 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            +  LVG   +GKTTFV    +G+F +  + T+G  +  +     +G +   +WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTIKIWDIGGQP 78

Query: 285 KFGGLRDGYYIQGQCAII-MFDVTSR 309
           +F  + +  Y +G  AI+ M D   R
Sbjct: 79  RFRSMWE-RYCRGVNAIVYMIDAADR 103


>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
          Length = 188

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 13/162 (8%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            +  LVG   +GKTTFV    +G+F +  + T+G  +  +     +G +   +WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQP 78

Query: 70  KFGGLRDGYYIQGQCAII-MFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 126
           +F  + +  Y +G  AI+ M D   +   +   N   +L+     + IP+++ GNK D+ 
Sbjct: 79  RFRSMWE-RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137

Query: 127 ---DRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163
              D K  ++  ++   + + +  Y IS K   N +    WL
Sbjct: 138 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179



 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            +  LVG   +GKTTFV    +G+F +  + T+G  +  +     +G +   +WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQP 78

Query: 285 KFGGLRDGYYIQGQCAII 302
           +F  + +  Y +G  AI+
Sbjct: 79  RFRSMWE-RYCRGVSAIV 95


>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
           (Arl10b)
          Length = 193

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 13/164 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            +  LVG   +GKTTFV    +G+F +  + T+G  +  +     +G +   +WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQP 87

Query: 70  KFGGLRDGYYIQGQCAII-MFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 126
           +F  + +  Y +G  AI+ M D   +   +   N   +L+     + IP+++ GNK D+ 
Sbjct: 88  RFRSMWE-RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 146

Query: 127 ---DRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
              D K  ++  ++   + + +  Y IS K   N +    WL +
Sbjct: 147 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190



 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            +  LVG   +GKTTFV    +G+F +  + T+G  +  +     +G +   +WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQP 87

Query: 285 KFGGLRDGYYIQGQCAII 302
           +F  + +  Y +G  AI+
Sbjct: 88  RFRSMWE-RYCRGVSAIV 104


>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
           Active Gtp Bound State
 pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
           Active Gtp Bound State
          Length = 198

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIK 126
           +  +R   Y      ++ FD++   T  + +  W  +++  C +  ++L G K D++
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 128



 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71

Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      ++ FD++
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDIS 93


>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
          Length = 214

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIK 126
           +  +R   Y      ++ FD++   T  + +  W  +++  C +  ++L G K D++
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144



 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87

Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      ++ FD++
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDIS 109


>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
           With Rnd1 Gtpase
 pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
           With Rnd1 Gtpase
          Length = 197

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIK 126
           +  +R   Y      ++ FD++   T  + +  W  +++  C +  ++L G K D++
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 127



 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70

Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      ++ FD++
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDIS 92


>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
          Length = 211

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 88/179 (49%), Gaps = 18/179 (10%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTT----FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 56
           +++E     ++ VL+G+ G GK+T    F   H + + + + +     E   +V   +  
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88

Query: 57  AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL--VRVCENI 114
            I  ++W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+I
Sbjct: 89  IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDI 146

Query: 115 PIVLCGNKVD-IKDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           PI+L GNK D ++ R+V     +A ++VF    + ++ + SA   +N ++ F  + R++
Sbjct: 147 PIILVGNKSDLVRCREVSVSEGRACAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 201



 Score = 28.1 bits (61), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 225 FKCVLVGDGGTGKTT----FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 280
           ++ VL+G+ G GK+T    F   H + + + + +     E   +V   +   I  ++W+ 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97

Query: 281 AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
            G+ ++  L D     G   +I++ +T R +++
Sbjct: 98  KGENEW--LHDHCMQVGDAYLIVYSITDRASFE 128


>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
 pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
          Length = 174

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 18/170 (10%)

Query: 10  FKCVLVGDGGTGKTT----FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
           ++ VL+G+ G GK+T    F   H + + + + +     E   +V   +   I  ++W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66

Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL--VRVCENIPIVLCGNKV 123
            G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+L GNK 
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124

Query: 124 D-IKDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           D ++ R+V     +A ++VF    + ++ + SA   +N ++ F  + R++
Sbjct: 125 DLVRCREVSVSEGRACAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170


>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
 pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
 pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
 pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
          Length = 208

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 11  KCVLVGDGGTGKTTFVKRHLT--GEFEKKYVATLGVEV--HPLVFHTNRGAIRFNVWDTA 66
           K  +VG+   GK+  +    +   +F K Y  T GVEV   P+       ++   + DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL--VRVCENIPI--VLCGNK 122
           G + +      Y+     AI++FDV+S  ++++   W   L   R     P+  VL  NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141

Query: 123 VDIKDRKVKAKSIV---FHRKKNLQYYDISAK-SNYNFEKPFLWLA 164
            D+  ++ + +  +   +     L ++D+SA     + + PFL +A
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187



 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%)

Query: 226 KCVLVGDGGTGKTTFVKRHLT--GEFEKKYVATLGVEV--HPLVFHTNRGAIRFNVWDTA 281
           K  +VG+   GK+  +    +   +F K Y  T GVEV   P+       ++   + DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITY---KNYYDISAKSNYNFEKPF 330
           G + +      Y+     AI++FDV+S  ++   K ++++   +  + E+P 
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL 133


>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
          Length = 201

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V++G    GKT+   + + GEF + Y  T+    +  +    +     ++ DTAGQ++
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE-NTYSKIVTLGKDEFHLHLVDTAGQDE 84

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIK-D 127
           +  L   + I     ++++ VTS  +++ + + ++ L        +P+VL GNK D+  +
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144

Query: 128 RKVKA 132
           R+V+A
Sbjct: 145 REVQA 149



 Score = 32.7 bits (73), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V++G    GKT+   + + GEF + Y  T+    +  +    +     ++ DTAGQ++
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE-NTYSKIVTLGKDEFHLHLVDTAGQDE 84

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +  L   + I     ++++ VTS  +++
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQ 112


>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
 pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
 pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
 pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
          Length = 175

 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 23/168 (13%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  ++ VL+GD G GKT+       G+ E+     LG +V+      +       V DT 
Sbjct: 2   MALYRVVLLGDPGVGKTSLASL-FAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTW 60

Query: 67  GQEKFGGLRDGYYIQGQCA------IIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVL 118
             EK     D  + Q  C       +I++ +  R ++++       L R    +++PI+L
Sbjct: 61  EAEKL----DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL 116

Query: 119 CGNKVDI-KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
            GNK D+ + R+V     +A ++VF    + ++ + SA   +N  + F
Sbjct: 117 VGNKADLARCREVSVEEGRACAVVF----DCKFIETSATLQHNVAELF 160


>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
           Disease-associated Leucine-rich Repeat Kinase 2 Reveals
           A Dimeric Gtpase
 pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
           Disease-associated Leucine-rich Repeat Kinase 2 Reveals
           A Dimeric Gtpase
          Length = 184

 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 11/176 (6%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVH--PLVFHTNRGA-IRFNVWDT 65
           K  +VG+ G+GKTT +++    +        AT+G++V   P+     R   +  NVWD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63

Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTS-RITYKNVPNWHRDLVRVCENIPIVLCGNKVD 124
           AG+E+F      +  Q    + ++D++  +        W  ++     + P++L G  +D
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHLD 123

Query: 125 IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNF-----EKPFLWLARKLIGDPNLEF 175
           + D K +        K+ L      A  +Y+F     E   L   RK I + +L F
Sbjct: 124 VSDEKQRKACXSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179



 Score = 36.2 bits (82), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVH--PLVFHTNRGA-IRFNVWDT 280
           K  +VG+ G+GKTT +++    +        AT+G++V   P+     R   +  NVWD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63

Query: 281 AGQEKFGGLRDGYYIQGQCAIIMFDVT 307
           AG+E+F      +  Q    + ++D++
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLS 90


>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
          Length = 196

 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL-GVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           K  + G  G GK+  V R LT  F  +Y  TL     H          +   + DTAGQE
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDE--VVSMEILDTAGQE 87

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHR--DLVRVCENIPIVLCGNKVDI 125
                R+G+   G+  ++++D+T R +++ V       D ++  +N+ ++L GNK D+
Sbjct: 88  DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144



 Score = 34.3 bits (77), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL-GVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           K  + G  G GK+  V R LT  F  +Y  TL     H          +   + DTAGQE
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDE--VVSMEILDTAGQE 87

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
                R+G+   G+  ++++D+T R +++
Sbjct: 88  DTIQ-REGHMRWGEGFVLVYDITDRGSFE 115


>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
          Length = 195

 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 13/167 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +LVG+ G GK+T        + +  +      + +      ++  +   V+D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83

Query: 70  KFGG-LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVLCGNKVDIK 126
             GG LRD     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 142

Query: 127 DRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWLARKL 167
               +++ +     ++L      ++ + SA  ++N  + F    R++
Sbjct: 143 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186



 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +LVG+ G GK+T        + +  +      + +      ++  +   V+D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83

Query: 285 KFGG-LRDGYYIQGQCAIIMFDVTSRITYK 313
             GG LRD     G   +I+F VT R ++ 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFS 113


>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
 pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
           Gppnhp
 pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
          Length = 177

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 3/124 (2%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           S K  ++G    GK++   + + G+F   Y  T+      L+   N       + DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI-TVNGQEYHLQLVDTAGQ 64

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIK 126
           +++      Y I     I+++ VTS  +++ +   H  L+ +     IPI+L GNK D+ 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124

Query: 127 DRKV 130
             +V
Sbjct: 125 MERV 128



 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           S K  ++G    GK++   + + G+F   Y  T+      L+   N       + DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI-TVNGQEYHLQLVDTAGQ 64

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTS 308
           +++      Y I     I+++ VTS
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTS 89


>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
           Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
           A Dimeric Gtpase
          Length = 171

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 6/152 (3%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVH--PLVFHTNRGA-IRFNVWDT 65
           K  +VG+ G+GKTT +++    +        AT+G++V   P+     R   +  NVWD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61

Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTS-RITYKNVPNWHRDLVRVCENIPIVLCGNKVD 124
           AG+E+F      +  Q    + ++D++  +        W  ++     + P++L G  +D
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHLD 121

Query: 125 IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNF 156
           + D K +        K+ L      A  +Y+F
Sbjct: 122 VSDEKQRKACXSKITKELLNKRGFPAIRDYHF 153



 Score = 36.2 bits (82), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVH--PLVFHTNRGA-IRFNVWDT 280
           K  +VG+ G+GKTT +++    +        AT+G++V   P+     R   +  NVWD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61

Query: 281 AGQEKFGGLRDGYYIQGQCAIIMFDVT 307
           AG+E+F      +  Q    + ++D++
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLS 88


>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
          Length = 169

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 3/124 (2%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           S K  ++G    GK++   + + G+F   Y  T+      L+   N       + DTAGQ
Sbjct: 1   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI-TVNGQEYHLQLVDTAGQ 59

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIK 126
           +++      Y I     I+++ VTS  +++ +   H  L+ +     IPI+L GNK D+ 
Sbjct: 60  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 119

Query: 127 DRKV 130
             +V
Sbjct: 120 MERV 123



 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           S K  ++G    GK++   + + G+F   Y  T+      L+   N       + DTAGQ
Sbjct: 1   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI-TVNGQEYHLQLVDTAGQ 59

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTS 308
           +++      Y I     I+++ VTS
Sbjct: 60  DEYSIFPQTYSIDINGYILVYSVTS 84


>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
           With Pde6d
          Length = 181

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 3/124 (2%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           S K  ++G    GK++   + + G+F   Y  T+      L+   N       + DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI-TVNGQEYHLQLVDTAGQ 64

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIK 126
           +++      Y I     I+++ VTS  +++ +   H  L+ +     IPI+L GNK D+ 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124

Query: 127 DRKV 130
             +V
Sbjct: 125 MERV 128



 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           S K  ++G    GK++   + + G+F   Y  T+      L+   N       + DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI-TVNGQEYHLQLVDTAGQ 64

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTS 308
           +++      Y I     I+++ VTS
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTS 89


>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
 pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
          Length = 169

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 31/176 (17%)

Query: 10  FKCVLVGDGGTGKTTFV---------KRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           FK +LVG+ G GK+T             H     E  Y   + V+   +        I +
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTL------IVY 56

Query: 61  NVWDTAGQEKFGG-LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIV 117
           ++W+   Q   GG L+D     G   +I+F VT R ++  VP     L   R   ++P++
Sbjct: 57  DIWE---QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 113

Query: 118 LCGNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+     +++ +     ++L      ++ + SA  ++N  + F    R++
Sbjct: 114 LVGNKSDL----ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165


>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
           To Gdp
 pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
           To Gdp
          Length = 180

 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 13/167 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+G+ G GK+T        + +  +      + +      ++  +   V+D   Q 
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72

Query: 70  KFGG-LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVLCGNKVDIK 126
             GG L+D     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 73  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 131

Query: 127 DRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWLARKL 167
               +++ +     ++L      ++ + SA  ++N  + F    R++
Sbjct: 132 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175


>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
 pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
 pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
          Length = 190

 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 23/133 (17%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVA-TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 71
           + +G   +GKTT + +      + + +  T+G  +          ++ F V+D +GQ ++
Sbjct: 25  LCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKF----KSSSLSFTVFDMSGQGRY 80

Query: 72  GGLRDGYYIQGQCAIIMFDVTSRI----------TYKNVPNW-HRDLVRVCENIPIVLCG 120
             L + YY +GQ  I + D + R+          T  N P+  HR        IPI+   
Sbjct: 81  RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHR-------RIPILFFA 133

Query: 121 NKVDIKDRKVKAK 133
           NK+D++D     K
Sbjct: 134 NKMDLRDAVTSVK 146



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 20/147 (13%)

Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVA-TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 286
           + +G   +GKTT + +      + + +  T+G  +          ++ F V+D +GQ ++
Sbjct: 25  LCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKF----KSSSLSFTVFDMSGQGRY 80

Query: 287 GGLRDGYYIQGQCAIIMFDVTSRI----------TYKNYYDISAKSNYNFEKPFLWLARK 336
             L + YY +GQ  I + D + R+          T  N+ DI  +       P L+ A K
Sbjct: 81  RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHR-----RIPILFFANK 135

Query: 337 LIGDPNLEFVAMPALLPPEVTMDPQWQ 363
           +     +  V +  LL  E   D  W 
Sbjct: 136 MDLRDAVTSVKVSQLLCLENIKDKPWH 162


>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
 pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
          Length = 535

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 11/130 (8%)

Query: 3   AEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG------ 56
           A + +   K  L+GDG  GKT+ +K+ +   F+ K   T G+ V        +G      
Sbjct: 35  ALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDE 94

Query: 57  --AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENI 114
                F+ WD  GQE        +  +    +++ D  SR T  N   W R + +     
Sbjct: 95  LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD--SR-TDSNKHYWLRHIEKYGGKS 151

Query: 115 PIVLCGNKVD 124
           P+++  NK+D
Sbjct: 152 PVIVVMNKID 161



 Score = 37.0 bits (84), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 10/126 (7%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--------AIRFN 276
            K  L+GDG  GKT+ +K+ +   F+ K   T G+ V        +G           F+
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARK 336
            WD  GQE        +  +    +++ D  SR     +Y +     Y  + P + +  K
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD--SRTDSNKHYWLRHIEKYGGKSPVIVVMNK 159

Query: 337 LIGDPN 342
           +  +P+
Sbjct: 160 IDENPS 165


>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
           Forms
 pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
           Forms
          Length = 167

 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           S K  ++G    GK++   + + G+F      T+      L+   N       + DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLI-TVNGQEYHLQLVDTAGQ 62

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIK 126
           +++      Y I     I+++ VTS  +++ +   H  L+ +     IPI+L GNK D+ 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 127 DRKV 130
             +V
Sbjct: 123 MERV 126


>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
 pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
          Length = 160

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGQD 55

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 124
           K   L   YY   Q  I + D   R     +    ++L R+       +  I++  NK D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 112

Query: 125 IKD 127
           + D
Sbjct: 113 LPD 115



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGQD 55

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   YY   Q  I + D   R
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADR 80


>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
           Trans State
 pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
           Trans State Soaked With Calcium
          Length = 497

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGQD 377

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 124
           K   L   YY   Q  I + D   R     +    ++L R+       +  I++  NK D
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 434

Query: 125 IKD 127
           + D
Sbjct: 435 LPD 437



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGQD 377

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   YY   Q  I + D   R
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADR 402


>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
 pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
          Length = 162

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGQD 55

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 124
           K   L   YY   Q  I + D   R     +    ++L R+       +  I++  NK D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 112

Query: 125 IKD 127
           + D
Sbjct: 113 LPD 115



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGQD 55

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   YY   Q  I + D   R
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADR 80


>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
           Brucei With Bound Nucleotide Analogue Gppnp
          Length = 199

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYV-ATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            + V+ G   +GKTT + +    +   K++ AT+G  V        +G + F V+D  G 
Sbjct: 18  LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGA 73

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNW------HRDLVRVCEN---IPIVLC 119
           +KF GL + YY      I + D +  +    V +       H D+ R       +P +  
Sbjct: 74  KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFF 133

Query: 120 GNKVDIKDRKVKAKSI 135
            NK+D    K  A+ +
Sbjct: 134 ANKMDAAGAKTAAELV 149



 Score = 37.4 bits (85), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 15/124 (12%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYV-ATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            + V+ G   +GKTT + +    +   K++ AT+G  V        +G + F V+D  G 
Sbjct: 18  LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGA 73

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRI----------TYKNYYDISAKSNYNFEKPFLWL 333
           +KF GL + YY      I + D +  +              + DI  +       PFL+ 
Sbjct: 74  KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFF 133

Query: 334 ARKL 337
           A K+
Sbjct: 134 ANKM 137


>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
 pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
          Length = 176

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 79/186 (42%), Gaps = 46/186 (24%)

Query: 6   DMPSFKCVLVGDGGTGKTTFVK----------RHLTGEFEKKYVATLGVEVHPLVFHTNR 55
           D   +K +L+G  G GK+   +              G    + +   G E   +V+    
Sbjct: 4   DESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVY---- 59

Query: 56  GAIRFNVWDTAGQEKFGGLRDGYYIQGQCA------IIMFDVTSRITYKNVPNWHRDL-- 107
                ++W+  G         G ++ G C       +I++ VT + +++        L  
Sbjct: 60  -----DIWEQDG---------GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRR 105

Query: 108 VRVCENIPIVLCGNKVD-IKDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161
            R  +++PI+L GNK D ++ R+V     +A ++VF    + ++ + SA  ++N +  F 
Sbjct: 106 ARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF----DCKFIETSAALHHNVQALFE 161

Query: 162 WLARKL 167
            + R++
Sbjct: 162 GVVRQI 167


>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
           Human Arf6-Gtp
 pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
           Its Human Protein Activator, Arf6
 pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
           Gtpgammas
 pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
           Gtpgammas
          Length = 175

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGQD 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 124
           K   L   YY   Q  I + D   R     +    ++L R+       +  I++  NK D
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 125

Query: 125 IKD 127
           + D
Sbjct: 126 LPD 128



 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGQD 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   YY   Q  I + D   R
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADR 93


>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
          Length = 174

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGQD 67

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 124
           K   L   YY   Q  I + D   R     +    ++L R+       +  I++  NK D
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 124

Query: 125 IKD 127
           + D
Sbjct: 125 LPD 127



 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGQD 67

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   YY   Q  I + D   R
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADR 92


>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
 pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
          Length = 174

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 79/186 (42%), Gaps = 46/186 (24%)

Query: 6   DMPSFKCVLVGDGGTGKTTFVK----------RHLTGEFEKKYVATLGVEVHPLVFHTNR 55
           D   +K +L+G  G GK+   +              G    + +   G E   +V+    
Sbjct: 4   DESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVY---- 59

Query: 56  GAIRFNVWDTAGQEKFGGLRDGYYIQGQCA------IIMFDVTSRITYKNVPNWHRDL-- 107
                ++W+  G         G ++ G C       +I++ VT + +++        L  
Sbjct: 60  -----DIWEQDG---------GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRR 105

Query: 108 VRVCENIPIVLCGNKVD-IKDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161
            R  +++PI+L GNK D ++ R+V     +A ++VF    + ++ + SA  ++N +  F 
Sbjct: 106 ARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF----DCKFIETSAALHHNVQALFE 161

Query: 162 WLARKL 167
            + R++
Sbjct: 162 GVVRQI 167


>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
          (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
          Length = 181

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           + ++VG  G GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKN----ISFTVWDVGGQD 72

Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSR 94
          +   L   YY   +  I + D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDR 97



 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + ++VG  G GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKN----ISFTVWDVGGQD 72

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           +   L   YY   +  I + D   R
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDR 97


>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
 pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
          Length = 179

 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG    GKTT + +    E       T+G  V  +V +  R    F +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTR----FLMWDIGGQES 72

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR----ITYKNYYDISAKSNYNFEKPFLWLARKLIGDP 341
                + YY   +  I++ D T R    +T +  Y + A  +   +   L  A K     
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR-KAGLLIFANKQDVKE 131

Query: 342 NLEFVAMPALLPPEVTMDPQWQ 363
            +    +   L      D QW 
Sbjct: 132 CMTVAEISQFLKLTSIKDHQWH 153



 Score = 38.1 bits (87), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 19/125 (15%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG    GKTT + +    E       T+G  V  +V +  R    F +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTR----FLMWDIGGQES 72

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSR----IT----YKNVPNWHRDLVRVCENIPIVLCGNK 122
                + YY   +  I++ D T R    +T    YK +   H DL +      +++  NK
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLLIFANK 126

Query: 123 VDIKD 127
            D+K+
Sbjct: 127 QDVKE 131


>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
          Length = 187

 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG    GKTT + +    E       T+G  V  +V +  R    F +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTR----FLMWDIGGQES 72

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR----ITYKNYYDISAKSNYNFEKPFLWLARKLIGDP 341
                + YY   +  I++ D T R    +T +  Y + A  +   +   L  A K     
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR-KAGLLIFANKQDVKE 131

Query: 342 NLEFVAMPALLPPEVTMDPQWQ 363
            +    +   L      D QW 
Sbjct: 132 CMTVAEISQFLKLTSIKDHQWH 153



 Score = 38.1 bits (87), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 19/125 (15%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG    GKTT + +    E       T+G  V  +V +  R    F +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTR----FLMWDIGGQES 72

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSR----IT----YKNVPNWHRDLVRVCENIPIVLCGNK 122
                + YY   +  I++ D T R    +T    YK +   H DL +      +++  NK
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLLIFANK 126

Query: 123 VDIKD 127
            D+K+
Sbjct: 127 QDVKE 131


>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
          Core Complex
 pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
          Core Complex
          Length = 164

 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           + ++VG  G GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 1  MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKN----ISFTVWDVGGQD 55

Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSR 94
          +   L   YY   +  I + D   R
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDR 80



 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + ++VG  G GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKN----ISFTVWDVGGQD 55

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           +   L   YY   +  I + D   R
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDR 80


>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
 pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
 pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
 pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
          Length = 183

 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG    GKTT + +    E       T+G  V  +V +  R    F +WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTR----FLMWDIGGQES 78

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR----ITYKNYYDISAKSNYNFEKPFLWLARKLIGDP 341
                + YY   +  I++ D T R    +T +  Y + A  +   +   L  A K     
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR-KAGLLIFANKQDVKE 137

Query: 342 NLEFVAMPALLPPEVTMDPQWQ 363
            +    +   L      D QW 
Sbjct: 138 CMTVAEISQFLKLTSIKDHQWH 159



 Score = 37.7 bits (86), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 19/125 (15%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG    GKTT + +    E       T+G  V  +V +  R    F +WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTR----FLMWDIGGQES 78

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSR----IT----YKNVPNWHRDLVRVCENIPIVLCGNK 122
                + YY   +  I++ D T R    +T    YK +   H DL +      +++  NK
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLLIFANK 132

Query: 123 VDIKD 127
            D+K+
Sbjct: 133 QDVKE 137


>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
           (Casp Target)
          Length = 181

 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG    GKTT + +    E       T+G  V  +V +  R    F +WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTR----FLMWDIGGQES 77

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR----ITYKNYYDISAKSNYNFEKPFLWLARKLIGDP 341
                + YY   +  I++ D T R    +T +  Y + A  +   +   L  A K     
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR-KAGLLIFANKQDVKE 136

Query: 342 NLEFVAMPALLPPEVTMDPQWQ 363
            +    +   L      D QW 
Sbjct: 137 CMTVAEISQFLKLTSIKDHQWH 158



 Score = 37.7 bits (86), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 19/125 (15%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG    GKTT + +    E       T+G  V  +V +  R    F +WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTR----FLMWDIGGQES 77

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSR----IT----YKNVPNWHRDLVRVCENIPIVLCGNK 122
                + YY   +  I++ D T R    +T    YK +   H DL +      +++  NK
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLLIFANK 131

Query: 123 VDIKD 127
            D+K+
Sbjct: 132 QDVKE 136


>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
          Gdp- Bound
          Length = 181

 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           + ++VG  G GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKN----ISFTVWDVGGQD 72

Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSR 94
          +   L   YY   +  I + D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDR 97



 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + ++VG  G GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKN----ISFTVWDVGGQD 72

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           +   L   YY   +  I + D   R
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDR 97


>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
 pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
 pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
 pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
 pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
 pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
          Length = 166

 Score = 38.5 bits (88), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 78/182 (42%), Gaps = 46/182 (25%)

Query: 10  FKCVLVGDGGTGKTTFVK----------RHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           +K +L+G  G GK+   +              G    + +   G E   +V+        
Sbjct: 3   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVY-------- 54

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCA------IIMFDVTSRITYKNVPNWHRDL--VRVC 111
            ++W+  G         G ++ G C       +I++ VT + +++        L   R  
Sbjct: 55  -DIWEQDG---------GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT 104

Query: 112 ENIPIVLCGNKVD-IKDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           +++PI+L GNK D ++ R+V     +A ++VF    + ++ + SA  ++N +  F  + R
Sbjct: 105 DDVPIILVGNKSDLVRSREVSVDEGRACAVVF----DCKFIETSAALHHNVQALFEGVVR 160

Query: 166 KL 167
           ++
Sbjct: 161 QI 162


>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
          Histolytica Hm- 1:imss Bound To Mg-Gdp
 pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
          Histolytica Hm- 1:imss Bound To Mg-Gdp
          Length = 178

 Score = 38.1 bits (87), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           + ++VG    GKT+ + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 72

Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSR 94
          K   L   YY   Q  I + D   R
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDR 97



 Score = 38.1 bits (87), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + ++VG    GKT+ + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 72

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   YY   Q  I + D   R
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDR 97


>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
          Length = 162

 Score = 38.1 bits (87), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           + + +G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  GQ+K
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGQDK 56

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDI 125
              L   YY   Q  I + D   R     +    ++L R+       +  I++  NK D+
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREXRDAIILIFANKQDL 113

Query: 126 KD 127
            D
Sbjct: 114 PD 115



 Score = 37.7 bits (86), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           + + +G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  GQ+K
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGQDK 56

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR 309
              L   YY   Q  I + D   R
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADR 80


>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
 pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
          Length = 180

 Score = 38.1 bits (87), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ICFTVWDVGGQD 72

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDI 125
           +   L   Y+   Q  I + D   R   + V +  + ++ V E  +  ++L  NK D+
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDL 130



 Score = 35.0 bits (79), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ICFTVWDVGGQD 72

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           +   L   Y+   Q  I + D   R
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDR 97


>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
          Conformation
          Length = 181

 Score = 37.7 bits (86), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           + ++VG  G GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVECVQYCN----ISFTVWDVGGQD 72

Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSR 94
          +   L   YY   +  I + D   R
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDR 97



 Score = 37.7 bits (86), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + ++VG  G GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVECVQYCN----ISFTVWDVGGQD 72

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           +   L   YY   +  I + D   R
Sbjct: 73  RIRSLWRHYYCNTEGVIFVVDSNDR 97


>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed
          With Brefeldin A
 pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain
          Carrying The Mutation Of The Catalytic Glutamate To
          Lysine
 pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And
          A Sec7 Domain
 pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
          Gdp
          Length = 164

 Score = 37.4 bits (85), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 1  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 55

Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSR 94
          K   L   Y+   Q  I + D   R
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDR 80



 Score = 37.4 bits (85), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 55

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   Y+   Q  I + D   R
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDR 80


>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
          Adp-Ribosylation Factor 1
          Length = 181

 Score = 37.4 bits (85), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
          + ++VG    GKTT + +   GE     + T+G  V  + F      I F VWD  GQ+K
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTT-IPTIGFNVETVEFRN----ISFTVWDVGGQDK 73

Query: 71 FGGLRDGYYIQGQCAIIMFDVTSR 94
             L   YY      I + D   R
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDR 97



 Score = 37.4 bits (85), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           + ++VG    GKTT + +   GE     + T+G  V  + F      I F VWD  GQ+K
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVVTT-IPTIGFNVETVEFRN----ISFTVWDVGGQDK 73

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR 309
              L   YY      I + D   R
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDR 97


>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
           Specific Effector, Jip4
 pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
           Specific Effector, Jip4
 pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
           Specific Effector, Jip4
          Length = 165

 Score = 37.4 bits (85), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 13/123 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  G +
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGLD 58

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 124
           K   L   YY   Q  I + D   R     +    ++L R+       +  I++  NK D
Sbjct: 59  KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 115

Query: 125 IKD 127
           + D
Sbjct: 116 LPD 118



 Score = 37.0 bits (84), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  G +
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGLD 58

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   YY   Q  I + D   R
Sbjct: 59  KIRPLWRHYYTGTQGLIFVVDCADR 83


>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
           Protein 1) Complex
 pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
           Protein 1) Complex
 pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
           Protein 1) Complex
 pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
           Protein 1) Complex
          Length = 172

 Score = 37.4 bits (85), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 13/123 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  G +
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGLD 57

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 124
           K   L   YY   Q  I + D   R     +    ++L R+       +  I++  NK D
Sbjct: 58  KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 114

Query: 125 IKD 127
           + D
Sbjct: 115 LPD 117



 Score = 37.0 bits (84), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  G +
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGLD 57

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   YY   Q  I + D   R
Sbjct: 58  KIRPLWRHYYTGTQGLIFVVDCADR 82


>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
 pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
          Length = 329

 Score = 37.0 bits (84), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 220

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSR 94
           K   L   Y+   Q  I + D   R
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDR 245



 Score = 37.0 bits (84), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 220

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   Y+   Q  I + D   R
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDR 245


>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
          Length = 175

 Score = 37.0 bits (84), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 13/123 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  G +
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGLD 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 124
           K   L   YY   Q  I + D   R     +    ++L R+       +  I++  NK D
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 125

Query: 125 IKD 127
           + D
Sbjct: 126 LPD 128



 Score = 36.6 bits (83), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT + +   G+     + T+G  V  + +      ++FNVWD  G +
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKN----VKFNVWDVGGLD 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   YY   Q  I + D   R
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADR 93


>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
          Complexed With Gdp, Dimeric Crystal Form
 pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
          Complexed With Gdp, Dimeric Crystal Form
 pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
          A Sec7 Domain
 pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
          A Sec7 Domain
 pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
          Complexed With Gdp, Monomeric Crystal Form
          Length = 181

 Score = 37.0 bits (84), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 72

Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSR 94
          K   L   Y+   Q  I + D   R
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDR 97



 Score = 37.0 bits (84), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 72

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   Y+   Q  I + D   R
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDR 97


>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
          Length Non-Myristoylated
 pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
          Length Non-Myristoylated
          Length = 180

 Score = 36.6 bits (83), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 71

Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSR 94
          K   L   Y+   Q  I + D   R
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDR 96



 Score = 36.6 bits (83), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 71

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   Y+   Q  I + D   R
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDR 96


>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
           Disturbance By Agrobacterium Protein 6b
 pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
           Disturbance By Agrobacterium Protein 6b
          Length = 184

 Score = 36.6 bits (83), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 75

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSR 94
           K   L   Y+   Q  I + D   R
Sbjct: 76  KIRPLWRHYFQNTQGLIFVVDSNDR 100



 Score = 36.6 bits (83), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 75

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   Y+   Q  I + D   R
Sbjct: 76  KIRPLWRHYFQNTQGLIFVVDSNDR 100


>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
           Like Protein 1 (Arl1) And Grip Domain Of Golgin245
           Complex
 pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
           Like Protein 1 (Arl1) And Grip Domain Of Golgin245
           Complex
 pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
           Like Protein 1 (Arl1) And Grip Domain Of Golgin245
           Complex
 pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
           Like Protein 1 (Arl1) And Grip Domain Of Golgin245
           Complex
          Length = 165

 Score = 36.6 bits (83), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G  G GKTT + R   GE     + T+G  V  + +      ++F VWD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKN----LKFQVWDLGGQT 57

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
                   YY      I + D   R     +     +LV + E        +V+  NK D
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 114

Query: 125 IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++          A  +   + +  Q +  SA      ++   WL   L
Sbjct: 115 MEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 162



 Score = 35.4 bits (80), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G  G GKTT + R   GE     + T+G  V  + +      ++F VWD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKN----LKFQVWDLGGQT 57

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
                   YY      I + D   R
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDR 82


>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
          Cerevisiae
 pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
          Cerevisiae
          Length = 183

 Score = 36.2 bits (82), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           + +++G  G GKTT + R   GE       T+G  V  L +      ++ NVWD  GQ 
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVETLSYKN----LKLNVWDLGGQT 73

Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSR 94
                  YY      I + D T +
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDK 98



 Score = 36.2 bits (82), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G  G GKTT + R   GE       T+G  V  L +      ++ NVWD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVETLSYKN----LKLNVWDLGGQT 73

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
                   YY      I + D T +
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDK 98


>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
          Length = 192

 Score = 35.4 bits (80), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ICFTVWDVGGQD 84

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSR 94
           K   L   Y+   Q  I + D   R
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDR 109



 Score = 35.4 bits (80), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ICFTVWDVGGQD 84

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K   L   Y+   Q  I + D   R
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDR 109


>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
           Gtp-Gdp
          Length = 310

 Score = 34.7 bits (78), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 11  KCVLVGDGGTGKTTF---VKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG 67
           K +L+G  G+GK++    +  + +    ++  AT+ VE   L F    G +  N+WD  G
Sbjct: 8   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDCGG 64

Query: 68  QE-----KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL 107
           Q+      F   +D  +   Q  I +FDV S    K++  + + L
Sbjct: 65  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKAL 109



 Score = 33.5 bits (75), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 226 KCVLVGDGGTGKTTF---VKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG 282
           K +L+G  G+GK++    +  + +    ++  AT+ VE   L F    G +  N+WD  G
Sbjct: 8   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDCGG 64

Query: 283 QE-----KFGGLRDGYYIQGQCAIIMFDVTS 308
           Q+      F   +D  +   Q  I +FDV S
Sbjct: 65  QDVFMENYFTKQKDHIFQMVQVLIHVFDVES 95


>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
          Length = 179

 Score = 33.9 bits (76), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 19/124 (15%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG    GKTT + + L  E       T+G  V  +V         F +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVVKNTH----FLMWDIGGQES 72

Query: 71  FGGLRDGYYIQGQCAIIMFD--------VTSRITYKNVPNWHRDLVRVCENIPIVLCGNK 122
                + YY   +  I++ D        +T    Y+ +   H DL +      +++  NK
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLA--HEDLRKA----AVLIFANK 126

Query: 123 VDIK 126
            D+K
Sbjct: 127 QDMK 130



 Score = 33.9 bits (76), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG    GKTT + + L  E       T+G  V  +V         F +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVVKNTH----FLMWDIGGQES 72

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR----ITYKNYYDISA 320
                + YY   +  I++ D   R    IT +  Y + A
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLA 111


>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
           Of Sec31
          Length = 167

 Score = 33.5 bits (75), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K + +G    GKTT +  H+    +   +ATL    HP       G I+F  +D  G  +
Sbjct: 3   KLLFLGLDNAGKTTLL--HM---LKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 57

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDR 128
              L   Y+ +    + + D      +         L  + E  ++P V+ GNK+D  + 
Sbjct: 58  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 117

Query: 129 KVKAK 133
             +A+
Sbjct: 118 VSEAE 122


>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
 pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
          Length = 190

 Score = 33.1 bits (74), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K + +G    GKTT +  H+    +   +ATL    HP       G I+F  +D  G  +
Sbjct: 25  KLLFLGLDNAGKTTLL--HM---LKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 79

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDR 128
              L   Y+ +    + + D      +         L  + E  ++P V+ GNK+D  + 
Sbjct: 80  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 139

Query: 129 KVKAK 133
             +A+
Sbjct: 140 VSEAE 144


>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
           Complex With Arl1
 pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
           Complex With Arl1
          Length = 166

 Score = 32.7 bits (73), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G  G GKTT + R   GE     + T+G  V  + +      ++F VWD  G  
Sbjct: 5   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKN----LKFQVWDLGGLT 59

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
                   YY      I + D   R     +     +LV + E        +V+  NK D
Sbjct: 60  SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 116

Query: 125 IKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++     ++      +   + +  Q +  SA      ++   WL   L
Sbjct: 117 MEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 164



 Score = 32.3 bits (72), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G  G GKTT + R   GE     + T+G  V  + +      ++F VWD  G  
Sbjct: 5   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKN----LKFQVWDLGGLT 59

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
                   YY      I + D   R
Sbjct: 60  SIRPYWRCYYSNTDAVIYVVDSCDR 84


>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
          Length = 186

 Score = 32.0 bits (71), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           + +++G    GKTT +K+   GE       TLG  +  L    +RG  + N+WD  GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKK-FNGEDVDTISPTLGFNIKTL---EHRG-FKLNIWDVGGQK 73

Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSR 94
                  Y+      I + D   R
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADR 98



 Score = 32.0 bits (71), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT +K+   GE       TLG  +  L    +RG  + N+WD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKK-FNGEDVDTISPTLGFNIKTL---EHRG-FKLNIWDVGGQK 73

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
                   Y+      I + D   R
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADR 98


>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
          Length = 186

 Score = 32.0 bits (71), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           + +++G    GKTT +K+   GE       TLG  +  L    +RG  + N+WD  GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKK-FNGEDVDTISPTLGFNIKTL---EHRG-FKLNIWDVGGQK 73

Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSR 94
                  Y+      I + D   R
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADR 98



 Score = 32.0 bits (71), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT +K+   GE       TLG  +  L    +RG  + N+WD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKK-FNGEDVDTISPTLGFNIKTL---EHRG-FKLNIWDVGGQK 73

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
                   Y+      I + D   R
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADR 98


>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
 pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
          Length = 192

 Score = 32.0 bits (71), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           + +++G    GKTT +K+   GE       TLG  +  L    +RG  + N+WD  GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKK-FNGEDIDTISPTLGFNIKTL---EHRG-FKLNIWDVGGQK 71

Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSR 94
                  Y+      I + D   R
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADR 96



 Score = 32.0 bits (71), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT +K+   GE       TLG  +  L    +RG  + N+WD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKK-FNGEDIDTISPTLGFNIKTL---EHRG-FKLNIWDVGGQK 71

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
                   Y+      I + D   R
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADR 96


>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
          Length = 178

 Score = 31.6 bits (70), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 34/184 (18%), Positives = 73/184 (39%), Gaps = 40/184 (21%)

Query: 6   DMPSFKCVLVGDGGTGKTTFVKRHLTGEFE-------KKYVATLGV--EVHPLVFHTNRG 56
            +P  +  ++GD  +GK++ + R LTG ++       ++Y   + V  + H ++     G
Sbjct: 4   SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63

Query: 57  A--IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV---- 110
           A   +F+ W  A                   I +F +    +++ V   H  L  +    
Sbjct: 64  APDAKFSGWADA------------------VIFVFSLEDENSFQAVSRLHGQLSSLRGEG 105

Query: 111 CENIPIVLCGNKVDIKDRK------VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164
              + + L G +  I           +A+++    K+   YY+  A    N ++ F  +A
Sbjct: 106 RGGLALALVGTQDRISASSPRVVGDARARALXADMKR-CSYYETXATYGLNVDRVFQEVA 164

Query: 165 RKLI 168
           +K++
Sbjct: 165 QKVV 168


>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
          Length = 178

 Score = 31.6 bits (70), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 34/184 (18%), Positives = 73/184 (39%), Gaps = 40/184 (21%)

Query: 6   DMPSFKCVLVGDGGTGKTTFVKRHLTGEFE-------KKYVATLGV--EVHPLVFHTNRG 56
            +P  +  ++GD  +GK++ + R LTG ++       ++Y   + V  + H ++     G
Sbjct: 4   SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63

Query: 57  A--IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV---- 110
           A   +F+ W  A                   I +F +    +++ V   H  L  +    
Sbjct: 64  APDAKFSGWADA------------------VIFVFSLEDENSFQAVSRLHGQLSSLRGEG 105

Query: 111 CENIPIVLCGNKVDIKDRK------VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164
              + + L G +  I           +A+++    K+   YY+  A    N ++ F  +A
Sbjct: 106 RGGLALALVGTQDRISASSPRVVGDARARALCADMKR-CSYYETCATYGLNVDRVFQEVA 164

Query: 165 RKLI 168
           +K++
Sbjct: 165 QKVV 168


>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
          With Arl1
 pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
          With Arl1
 pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
          With Arl1
 pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
          With Arl1
          Length = 171

 Score = 31.6 bits (70), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
          + +++G  G GKTT + R   GE     + T+G  V  + +      ++F VWD  G   
Sbjct: 9  RILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKN----LKFQVWDLGGLTS 63

Query: 71 FGGLRDGYYIQGQCAIIMFDVTSR 94
                 YY      I + D   R
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDR 87



 Score = 31.6 bits (70), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           + +++G  G GKTT + R   GE     + T+G  V  + +      ++F VWD  G   
Sbjct: 9   RILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKN----LKFQVWDLGGLTS 63

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR 309
                  YY      I + D   R
Sbjct: 64  IRPYWRCYYSNTDAVIYVVDSCDR 87


>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
 pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
          Length = 208

 Score = 31.2 bits (69), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           S K V +G    GKTT +   L  +   ++V TL    HP         + F  +D  G 
Sbjct: 35  SGKLVFLGLDNAGKTTLL-HMLKDDRLGQHVPTL----HPTSEELTIAGMTFTTFDLGGH 89

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVT--SRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 126
           E+   +   Y       + + D    SR+    V            N+PI++ GNK+D  
Sbjct: 90  EQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRT 149

Query: 127 D 127
           D
Sbjct: 150 D 150


>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
          Dimerization Deficient Mutant R130a
          Length = 262

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 6  DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
          DM S   +++G GG GK++ V   L GE   +        + P++     G    N+ DT
Sbjct: 33 DMNSMTVLVLGKGGVGKSSTVN-SLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDT 91

Query: 66 AGQEKFG 72
           G  + G
Sbjct: 92 PGLVEAG 98


>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
          Complex With Mg2+ And Gmppnp
          Length = 262

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 6  DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
          DM S   +++G GG GK++ V   L GE   +        + P++     G    N+ DT
Sbjct: 33 DMNSMTVLVLGKGGVGKSSTVN-SLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDT 91

Query: 66 AG 67
           G
Sbjct: 92 PG 93


>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
          Complex With Gdp And Mg2+
          Length = 262

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 6  DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
          DM S   +++G GG GK++ V   L GE   +        + P++     G    N+ DT
Sbjct: 33 DMNSMTVLVLGKGGVGKSSTVN-SLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDT 91

Query: 66 AG 67
           G
Sbjct: 92 PG 93


>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
          Chloroplast Translocon Components Attoc33 And Pstoc159
          Length = 249

 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 4  EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 63
          + DM S   +++G GG GK++ V   L GE   +        + P++     G    N+ 
Sbjct: 30 QKDMNSMTVLVLGKGGVGKSSTVN-SLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINII 88

Query: 64 DTAG 67
          DT G
Sbjct: 89 DTPG 92


>pdb|4FH3|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
           The Mechanism For Utp Selectivity
 pdb|4FH5|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
           The Mechanism For Utp Selectivity - Mgutp Bound
 pdb|4FHP|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
           The Mechanism For Utp Selectivity - Cautp Bound
 pdb|4FHV|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
           The Mechanism For Utp Selectivity - Mgctp Bound
 pdb|4FHW|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
           The Mechanism For Utp Selectivity - Mggtp Bound
 pdb|4FHY|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
           The Mechanism For Utp Selectivity - Mg 3'-Datp Bound
          Length = 349

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 93  SRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK 133
           S ++Y+ VPN H++  + C  +      N++ I D++ K K
Sbjct: 2   SHMSYQKVPNSHKEFTKFCYEV-----YNEIKISDKEFKEK 37


>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In
          Complex With Unc119a
 pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In
          Complex With Unc119a
          Length = 189

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
          + +L+G    GKTT +K  L  E       T G  +  +         + NVWD  GQ K
Sbjct: 19 RILLLGLDNAGKTTLLK-QLASEDISHITPTQGFNIKSV----QSQGFKLNVWDIGGQRK 73

Query: 71 FGGLRDGYYIQGQCAIIMFDVTSR 94
                 Y+      I + D   R
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADR 97



 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           + +L+G    GKTT +K  L  E       T G  +  +         + NVWD  GQ K
Sbjct: 19  RILLLGLDNAGKTTLLK-QLASEDISHITPTQGFNIKSV----QSQGFKLNVWDIGGQRK 73

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR 309
                  Y+      I + D   R
Sbjct: 74  IRPYWRSYFENTDILIYVIDSADR 97


>pdb|4FHX|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
           The Mechanism For Utp Selectivity - H336n Mutant Bound
           To Mgatp
          Length = 349

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 93  SRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK 133
           S ++Y+ VPN H++  + C  +      N++ I D++ K K
Sbjct: 2   SHMSYQKVPNSHKEFTKFCYEV-----YNEIKISDKEFKEK 37


>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
          Length = 181

 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
          + +L+G    GKTT +K  L  E       T G  +  +         + NVWD  GQ K
Sbjct: 18 RILLLGLDNAGKTTLLK-QLASEDISHITPTQGFNIKSV----QSQGFKLNVWDIGGQRK 72

Query: 71 FGGLRDGYYIQGQCAIIMFDVTSR 94
                 Y+      I + D   R
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADR 96



 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           + +L+G    GKTT +K  L  E       T G  +  +         + NVWD  GQ K
Sbjct: 18  RILLLGLDNAGKTTLLK-QLASEDISHITPTQGFNIKSV----QSQGFKLNVWDIGGQRK 72

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR 309
                  Y+      I + D   R
Sbjct: 73  IRPYWRSYFENTDILIYVIDSADR 96


>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
          Length = 186

 Score = 29.3 bits (64), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 21 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI 80
          GKTT +K+   GE       TLG  +  L    +RG  + N+WD  GQ+        Y+ 
Sbjct: 30 GKTTILKK-FNGEDVDTISPTLGFNIKTL---EHRG-FKLNIWDVGGQKSLRSYWRNYFE 84

Query: 81 QGQCAIIMFDVTSR 94
               I + D   R
Sbjct: 85 STDGLIWVVDSADR 98



 Score = 29.3 bits (64), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 236 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI 295
           GKTT +K+   GE       TLG  +  L    +RG  + N+WD  GQ+        Y+ 
Sbjct: 30  GKTTILKK-FNGEDVDTISPTLGFNIKTL---EHRG-FKLNIWDVGGQKSLRSYWRNYFE 84

Query: 296 QGQCAIIMFDVTSR 309
                I + D   R
Sbjct: 85  STDGLIWVVDSADR 98


>pdb|4GP7|A Chain A, Polynucleotide Kinase
 pdb|4GP7|B Chain B, Polynucleotide Kinase
          Length = 171

 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 13 VLVGDGGTGKTTFVKRHL 30
          VL+G  G+GK+TF K+H 
Sbjct: 13 VLIGSSGSGKSTFAKKHF 30



 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 228 VLVGDGGTGKTTFVKRHL 245
           VL+G  G+GK+TF K+H 
Sbjct: 13  VLIGSSGSGKSTFAKKHF 30


>pdb|4GP6|A Chain A, Polynucleotide Kinase
 pdb|4GP6|B Chain B, Polynucleotide Kinase
          Length = 171

 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 13 VLVGDGGTGKTTFVKRHL 30
          VL+G  G+GK+TF K+H 
Sbjct: 13 VLIGSSGSGKSTFAKKHF 30



 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 228 VLVGDGGTGKTTFVKRHL 245
           VL+G  G+GK+TF K+H 
Sbjct: 13  VLIGSSGSGKSTFAKKHF 30


>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
           (P190rhogap)
          Length = 255

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 98  KNVPNWHRDLVRVCENIPIVL--CGNKVD--IKDRKVKAKSIVFHRKKNLQYYDISAKSN 153
           K V N +  L +  + I +VL  C   V+  I+D    A S     KKNLQ  + SA+SN
Sbjct: 185 KFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS-----KKNLQVVETSARSN 239

Query: 154 YNFEKPFLWLAR 165
            N +  F  L +
Sbjct: 240 VNVDLAFSTLVQ 251


>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
          Gdp-Alf4
          Length = 164

 Score = 28.5 bits (62), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
          + +L+G    GKTT +K+ L  E       T G  +  +         + NVWD  GQ K
Sbjct: 6  RILLLGLDNAGKTTLLKQ-LASEDISHITPTQGFNIKSV----QSQGFKLNVWDIGGQRK 60

Query: 71 FGGLRDGYYIQGQCAIIMFDVTSR 94
                 Y+      I + D   R
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADR 84



 Score = 28.5 bits (62), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           + +L+G    GKTT +K+ L  E       T G  +  +         + NVWD  GQ K
Sbjct: 6   RILLLGLDNAGKTTLLKQ-LASEDISHITPTQGFNIKSV----QSQGFKLNVWDIGGQRK 60

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR 309
                  Y+      I + D   R
Sbjct: 61  IRPYWRSYFENTDILIYVIDSADR 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,179,931
Number of Sequences: 62578
Number of extensions: 515851
Number of successful extensions: 2620
Number of sequences better than 100.0: 352
Number of HSP's better than 100.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1303
Number of HSP's gapped (non-prelim): 737
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)