Query psy125
Match_columns 385
No_of_seqs 426 out of 4384
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 20:52:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1160 Predicted GTPases [Gen 100.0 6.2E-38 1.3E-42 282.7 23.7 279 10-338 4-351 (444)
2 PRK03003 GTP-binding protein D 100.0 1.7E-37 3.7E-42 296.6 23.8 277 10-339 39-383 (472)
3 TIGR03594 GTPase_EngA ribosome 100.0 1.8E-35 4E-40 281.8 25.1 278 11-339 1-345 (429)
4 PRK00093 GTP-binding protein D 100.0 1.4E-33 3.1E-38 269.0 26.1 277 10-338 2-344 (435)
5 PRK09518 bifunctional cytidyla 100.0 3.4E-33 7.3E-38 278.9 23.9 280 9-339 275-622 (712)
6 KOG0084|consensus 100.0 1.8E-32 3.9E-37 218.6 12.4 126 223-348 8-182 (205)
7 KOG0080|consensus 100.0 1.4E-31 3E-36 204.9 11.8 123 224-346 11-182 (209)
8 KOG0092|consensus 100.0 1.6E-31 3.6E-36 212.2 12.4 122 223-344 4-173 (200)
9 PTZ00132 GTP-binding nuclear p 100.0 3.2E-29 7E-34 216.4 24.8 205 1-210 1-210 (215)
10 KOG0084|consensus 100.0 5E-30 1.1E-34 204.6 17.8 166 7-172 7-176 (205)
11 PLN03071 GTP-binding nuclear p 100.0 1.8E-28 4E-33 211.4 24.6 205 6-210 10-214 (219)
12 KOG0094|consensus 100.0 4.2E-30 9.1E-35 204.0 11.9 121 223-343 21-190 (221)
13 KOG0080|consensus 100.0 7.7E-29 1.7E-33 189.9 16.7 168 8-175 10-181 (209)
14 KOG0098|consensus 100.0 3.1E-30 6.7E-35 203.0 9.1 125 223-347 5-177 (216)
15 KOG0092|consensus 100.0 9.2E-29 2E-33 196.6 16.9 166 5-170 1-169 (200)
16 KOG0098|consensus 100.0 1.3E-28 2.9E-33 193.8 15.3 163 7-169 4-169 (216)
17 KOG0078|consensus 100.0 2.6E-29 5.6E-34 203.8 10.9 121 223-343 11-179 (207)
18 KOG0078|consensus 100.0 5.4E-28 1.2E-32 196.2 18.2 169 2-170 5-176 (207)
19 KOG0394|consensus 100.0 2.9E-29 6.2E-34 197.2 9.6 122 222-343 7-183 (210)
20 KOG0079|consensus 100.0 1E-29 2.2E-34 192.0 6.1 117 225-341 9-172 (198)
21 KOG0094|consensus 100.0 9.6E-28 2.1E-32 190.6 17.6 164 7-170 20-187 (221)
22 KOG0086|consensus 100.0 8.2E-29 1.8E-33 188.0 8.4 119 224-342 9-175 (214)
23 cd00877 Ran Ran (Ras-related n 100.0 1.1E-26 2.4E-31 192.2 21.1 164 10-173 1-164 (166)
24 KOG0394|consensus 100.0 2.5E-27 5.5E-32 186.3 15.9 170 1-170 1-180 (210)
25 smart00176 RAN Ran (Ras-relate 100.0 1.8E-26 4E-31 195.2 22.5 189 15-203 1-189 (200)
26 cd04121 Rab40 Rab40 subfamily. 100.0 9.8E-27 2.1E-31 195.4 20.2 163 8-170 5-169 (189)
27 cd04133 Rop_like Rop subfamily 100.0 1.4E-26 3E-31 192.3 20.3 159 10-169 2-174 (176)
28 KOG0079|consensus 100.0 8.6E-28 1.9E-32 181.5 11.4 168 1-169 1-170 (198)
29 KOG0087|consensus 100.0 6.5E-28 1.4E-32 194.5 10.6 120 223-342 13-180 (222)
30 cd04120 Rab12 Rab12 subfamily. 99.9 2.9E-26 6.2E-31 194.4 20.2 161 10-170 1-165 (202)
31 KOG0091|consensus 99.9 1.6E-28 3.4E-33 188.7 5.0 119 224-342 8-177 (213)
32 KOG0088|consensus 99.9 3.6E-28 7.8E-33 185.7 6.9 132 223-354 12-192 (218)
33 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 6.3E-26 1.4E-30 189.6 19.6 160 8-168 4-180 (182)
34 cd01875 RhoG RhoG subfamily. 99.9 7.6E-26 1.6E-30 191.4 20.3 162 7-169 1-178 (191)
35 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.4E-25 3E-30 191.7 20.9 163 10-172 1-172 (201)
36 KOG0087|consensus 99.9 3.4E-26 7.3E-31 184.6 15.5 163 7-169 12-177 (222)
37 cd04120 Rab12 Rab12 subfamily. 99.9 9.7E-27 2.1E-31 197.2 13.1 117 225-341 1-166 (202)
38 PLN03071 GTP-binding nuclear p 99.9 4.8E-26 1E-30 196.4 17.6 163 222-384 11-218 (219)
39 cd04131 Rnd Rnd subfamily. Th 99.9 1.4E-25 2.9E-30 187.3 19.6 159 9-168 1-176 (178)
40 KOG0086|consensus 99.9 1.7E-26 3.7E-31 175.5 12.7 167 7-173 7-176 (214)
41 cd04122 Rab14 Rab14 subfamily. 99.9 2.6E-25 5.6E-30 184.3 19.9 160 9-168 2-164 (166)
42 KOG0095|consensus 99.9 6E-27 1.3E-31 177.2 9.1 116 224-339 7-170 (213)
43 cd04124 RabL2 RabL2 subfamily. 99.9 5E-25 1.1E-29 181.5 20.8 159 10-169 1-159 (161)
44 cd04128 Spg1 Spg1p. Spg1p (se 99.9 4.1E-25 9E-30 185.1 20.5 160 10-170 1-168 (182)
45 KOG0096|consensus 99.9 3.8E-26 8.3E-31 180.4 13.2 206 7-212 8-213 (216)
46 KOG0093|consensus 99.9 1.6E-26 3.5E-31 174.5 10.1 120 224-343 21-188 (193)
47 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 3.5E-25 7.5E-30 190.8 19.8 161 8-169 12-189 (232)
48 cd01865 Rab3 Rab3 subfamily. 99.9 6.6E-25 1.4E-29 181.6 20.2 159 10-168 2-163 (165)
49 cd01867 Rab8_Rab10_Rab13_like 99.9 8E-25 1.7E-29 181.5 20.3 162 8-169 2-166 (167)
50 cd04117 Rab15 Rab15 subfamily. 99.9 6.8E-25 1.5E-29 180.6 19.5 157 10-166 1-160 (161)
51 PTZ00369 Ras-like protein; Pro 99.9 9.4E-25 2E-29 184.6 20.2 164 5-169 1-168 (189)
52 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 8E-25 1.7E-29 182.0 19.2 160 9-169 2-165 (172)
53 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.5E-24 3.2E-29 179.7 20.3 160 9-168 2-164 (166)
54 cd04110 Rab35 Rab35 subfamily. 99.9 1.3E-24 2.9E-29 185.1 20.3 163 8-170 5-169 (199)
55 KOG0097|consensus 99.9 2.6E-26 5.5E-31 172.2 8.2 123 224-346 11-181 (215)
56 cd04119 RJL RJL (RabJ-Like) su 99.9 1.3E-24 2.8E-29 180.3 19.4 159 10-168 1-167 (168)
57 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.5E-24 3.3E-29 180.8 19.6 157 10-167 2-174 (175)
58 cd04127 Rab27A Rab27a subfamil 99.9 1.3E-24 2.8E-29 182.6 19.2 162 8-169 3-178 (180)
59 cd04106 Rab23_lke Rab23-like s 99.9 1.4E-24 3.1E-29 179.1 18.8 157 10-166 1-161 (162)
60 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 2.4E-24 5.3E-29 178.7 19.9 159 11-169 2-166 (170)
61 cd04136 Rap_like Rap-like subf 99.9 2E-24 4.3E-29 178.4 19.3 158 9-167 1-162 (163)
62 cd04175 Rap1 Rap1 subgroup. T 99.9 2.4E-24 5.3E-29 178.1 19.7 158 9-167 1-162 (164)
63 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 2.3E-24 4.9E-29 184.8 19.7 161 9-170 1-178 (222)
64 cd01866 Rab2 Rab2 subfamily. 99.9 4E-24 8.7E-29 177.4 20.4 161 8-168 3-166 (168)
65 cd04121 Rab40 Rab40 subfamily. 99.9 3.1E-25 6.8E-30 186.3 13.5 120 223-342 5-171 (189)
66 smart00176 RAN Ran (Ras-relate 99.9 5.9E-25 1.3E-29 186.0 14.9 126 230-355 1-171 (200)
67 cd04134 Rho3 Rho3 subfamily. 99.9 3.7E-24 8.1E-29 180.9 19.8 158 11-169 2-175 (189)
68 cd01868 Rab11_like Rab11-like. 99.9 4.2E-24 9.2E-29 176.8 19.7 159 9-167 3-164 (165)
69 cd04138 H_N_K_Ras_like H-Ras/N 99.9 4.5E-24 9.7E-29 176.0 19.6 158 9-167 1-161 (162)
70 cd01871 Rac1_like Rac1-like su 99.9 4.1E-24 8.8E-29 178.0 19.3 156 10-166 2-173 (174)
71 cd04176 Rap2 Rap2 subgroup. T 99.9 4.7E-24 1E-28 176.2 19.4 158 9-167 1-162 (163)
72 PF00071 Ras: Ras family; Int 99.9 6.1E-24 1.3E-28 175.3 19.8 158 11-168 1-161 (162)
73 cd04109 Rab28 Rab28 subfamily. 99.9 4.7E-24 1E-28 184.0 19.7 160 10-169 1-167 (215)
74 cd04113 Rab4 Rab4 subfamily. 99.9 5.5E-24 1.2E-28 175.4 19.0 157 10-166 1-160 (161)
75 cd04140 ARHI_like ARHI subfami 99.9 6.5E-24 1.4E-28 175.6 19.2 156 10-166 2-163 (165)
76 cd04125 RabA_like RabA-like su 99.9 9.3E-24 2E-28 178.5 20.4 161 10-170 1-164 (188)
77 KOG0093|consensus 99.9 1.7E-24 3.7E-29 163.5 13.9 161 9-169 21-184 (193)
78 cd04116 Rab9 Rab9 subfamily. 99.9 8.2E-24 1.8E-28 176.0 19.5 159 8-166 4-169 (170)
79 cd01864 Rab19 Rab19 subfamily. 99.9 8.2E-24 1.8E-28 175.1 19.4 159 8-166 2-164 (165)
80 KOG0095|consensus 99.9 1.3E-24 2.8E-29 164.6 13.1 162 9-170 7-171 (213)
81 cd04112 Rab26 Rab26 subfamily. 99.9 7.7E-24 1.7E-28 179.4 19.5 161 10-170 1-165 (191)
82 PLN03110 Rab GTPase; Provision 99.9 9.8E-24 2.1E-28 181.8 20.4 162 8-169 11-175 (216)
83 KOG0096|consensus 99.9 8E-25 1.7E-29 173.0 12.3 163 223-385 9-216 (216)
84 cd04118 Rab24 Rab24 subfamily. 99.9 1.1E-23 2.4E-28 178.9 20.4 161 10-170 1-168 (193)
85 cd04133 Rop_like Rop subfamily 99.9 1.2E-24 2.6E-29 180.7 13.7 114 225-339 2-174 (176)
86 KOG0083|consensus 99.9 2E-26 4.3E-31 171.1 2.7 113 228-340 1-162 (192)
87 cd04132 Rho4_like Rho4-like su 99.9 8.4E-24 1.8E-28 178.8 19.0 161 10-170 1-169 (187)
88 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.6E-23 3.4E-28 173.2 19.8 159 8-167 1-163 (164)
89 cd04144 Ras2 Ras2 subfamily. 99.9 8.3E-24 1.8E-28 179.0 18.0 158 11-169 1-164 (190)
90 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2E-23 4.3E-28 173.6 19.7 159 9-167 2-168 (170)
91 cd04111 Rab39 Rab39 subfamily. 99.9 1.7E-23 3.6E-28 179.6 19.6 162 9-170 2-168 (211)
92 smart00173 RAS Ras subfamily o 99.9 1.9E-23 4E-28 172.8 19.1 158 10-168 1-162 (164)
93 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.8E-24 4E-29 180.8 12.9 116 223-339 4-181 (182)
94 COG1159 Era GTPase [General fu 99.9 1.3E-23 2.8E-28 180.2 18.2 219 5-235 2-250 (298)
95 cd01861 Rab6 Rab6 subfamily. 99.9 2E-23 4.3E-28 172.0 18.8 157 10-166 1-160 (161)
96 TIGR00436 era GTP-binding prot 99.9 2.4E-23 5.2E-28 185.5 20.5 194 11-217 2-205 (270)
97 cd04101 RabL4 RabL4 (Rab-like4 99.9 2.5E-23 5.4E-28 172.0 19.3 158 10-167 1-163 (164)
98 cd01860 Rab5_related Rab5-rela 99.9 3.1E-23 6.7E-28 171.3 19.8 159 9-167 1-162 (163)
99 cd01862 Rab7 Rab7 subfamily. 99.9 3E-23 6.4E-28 172.9 19.8 161 10-170 1-169 (172)
100 smart00175 RAB Rab subfamily o 99.9 3.1E-23 6.6E-28 171.4 19.6 159 10-168 1-162 (164)
101 PLN03108 Rab family protein; P 99.9 2.6E-23 5.7E-28 178.4 19.7 162 8-169 5-169 (210)
102 cd04142 RRP22 RRP22 subfamily. 99.9 3.6E-23 7.8E-28 175.5 20.2 161 10-170 1-176 (198)
103 cd01875 RhoG RhoG subfamily. 99.9 3.4E-24 7.3E-29 181.3 13.8 116 224-340 3-179 (191)
104 cd04126 Rab20 Rab20 subfamily. 99.9 2.8E-23 6E-28 178.1 19.3 155 10-169 1-191 (220)
105 PRK15494 era GTPase Era; Provi 99.9 2.6E-23 5.7E-28 190.1 20.3 197 7-217 50-257 (339)
106 smart00174 RHO Rho (Ras homolo 99.9 3.5E-23 7.6E-28 172.9 19.2 157 12-169 1-173 (174)
107 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 3.8E-24 8.2E-29 184.4 12.6 117 223-340 12-190 (232)
108 cd01892 Miro2 Miro2 subfamily. 99.9 4.1E-23 8.8E-28 171.3 18.3 161 7-168 2-166 (169)
109 cd01863 Rab18 Rab18 subfamily. 99.9 8E-23 1.7E-27 168.4 19.8 157 10-166 1-160 (161)
110 cd04128 Spg1 Spg1p. Spg1p (se 99.9 7.1E-24 1.5E-28 177.7 13.2 117 225-341 1-169 (182)
111 PLN03118 Rab family protein; P 99.9 1.2E-22 2.5E-27 174.9 20.9 165 7-172 12-181 (211)
112 cd04131 Rnd Rnd subfamily. Th 99.9 8.4E-24 1.8E-28 176.5 13.2 113 225-338 2-176 (178)
113 cd01873 RhoBTB RhoBTB subfamil 99.9 6.6E-23 1.4E-27 173.2 18.8 156 9-166 2-194 (195)
114 KOG1707|consensus 99.9 7.5E-23 1.6E-27 188.3 20.4 182 1-184 1-191 (625)
115 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1E-22 2.2E-27 169.8 19.3 155 10-165 1-171 (173)
116 cd04103 Centaurin_gamma Centau 99.9 8.2E-23 1.8E-27 167.2 18.3 150 10-166 1-157 (158)
117 cd04143 Rhes_like Rhes_like su 99.9 1E-22 2.2E-27 178.0 19.7 157 10-167 1-170 (247)
118 KOG0091|consensus 99.9 1.4E-23 3.1E-28 161.5 12.3 162 8-169 7-174 (213)
119 cd04149 Arf6 Arf6 subfamily. 99.9 4.7E-23 1E-27 170.7 16.4 156 5-165 5-167 (168)
120 cd04122 Rab14 Rab14 subfamily. 99.9 1E-23 2.2E-28 174.6 12.4 115 225-339 3-165 (166)
121 cd04148 RGK RGK subfamily. Th 99.9 3.1E-22 6.7E-27 172.9 21.9 159 10-170 1-165 (221)
122 cd00877 Ran Ran (Ras-related n 99.9 2.1E-23 4.7E-28 172.5 14.0 120 225-344 1-165 (166)
123 KOG0088|consensus 99.9 6.6E-24 1.4E-28 162.4 9.9 163 8-170 12-177 (218)
124 cd04177 RSR1 RSR1 subgroup. R 99.9 2E-22 4.3E-27 167.2 19.8 158 9-167 1-163 (168)
125 PTZ00132 GTP-binding nuclear p 99.9 7.3E-23 1.6E-27 176.7 17.4 164 222-385 7-215 (215)
126 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.4E-23 3E-28 174.6 12.1 116 224-340 2-166 (172)
127 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.4E-23 3E-28 179.3 12.4 117 225-341 1-171 (201)
128 PLN00223 ADP-ribosylation fact 99.9 9.9E-23 2.1E-27 170.7 17.2 159 7-170 15-180 (181)
129 cd04158 ARD1 ARD1 subfamily. 99.9 1.1E-22 2.4E-27 168.9 17.3 158 11-173 1-166 (169)
130 cd04135 Tc10 TC10 subfamily. 99.9 2.6E-22 5.7E-27 167.6 19.5 157 10-167 1-173 (174)
131 cd04123 Rab21 Rab21 subfamily. 99.9 3E-22 6.4E-27 165.1 19.6 158 10-167 1-161 (162)
132 cd04146 RERG_RasL11_like RERG/ 99.9 2.1E-22 4.6E-27 166.6 17.9 156 11-167 1-163 (165)
133 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 2.6E-23 5.6E-28 178.3 12.5 117 225-342 2-180 (222)
134 cd00154 Rab Rab family. Rab G 99.9 2.9E-22 6.3E-27 164.3 18.3 155 10-164 1-158 (159)
135 smart00177 ARF ARF-like small 99.9 2.3E-22 5.1E-27 167.7 17.7 156 7-167 11-173 (175)
136 cd01870 RhoA_like RhoA-like su 99.9 4.8E-22 1E-26 166.1 19.6 157 10-167 2-174 (175)
137 cd04114 Rab30 Rab30 subfamily. 99.9 7.4E-22 1.6E-26 164.0 20.5 160 8-167 6-168 (169)
138 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.3E-22 4.9E-27 165.1 16.3 151 10-165 1-158 (159)
139 cd04117 Rab15 Rab15 subfamily. 99.9 4.8E-23 1E-27 169.6 12.1 112 225-336 1-160 (161)
140 cd01874 Cdc42 Cdc42 subfamily. 99.9 7.2E-23 1.5E-27 170.7 13.3 112 225-337 2-174 (175)
141 cd04139 RalA_RalB RalA/RalB su 99.9 7.8E-22 1.7E-26 162.9 19.4 158 10-168 1-162 (164)
142 cd04154 Arl2 Arl2 subfamily. 99.9 2.7E-22 5.8E-27 167.3 16.2 155 5-164 10-171 (173)
143 PTZ00133 ADP-ribosylation fact 99.9 4.6E-22 9.9E-27 166.9 17.3 158 7-169 15-179 (182)
144 cd04134 Rho3 Rho3 subfamily. 99.9 1.3E-22 2.9E-27 171.4 14.1 116 226-342 2-178 (189)
145 KOG0097|consensus 99.9 1.9E-22 4.1E-27 151.4 13.0 163 8-170 10-175 (215)
146 cd01871 Rac1_like Rac1-like su 99.9 1E-22 2.2E-27 169.7 12.7 111 225-336 2-173 (174)
147 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 5.9E-22 1.3E-26 166.6 16.9 162 8-170 2-172 (183)
148 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2E-22 4.4E-27 166.3 13.7 149 12-164 2-162 (164)
149 KOG0081|consensus 99.9 1.4E-23 2.9E-28 160.8 6.1 162 8-169 8-182 (219)
150 PTZ00369 Ras-like protein; Pro 99.9 1.2E-22 2.6E-27 171.7 12.5 117 223-340 4-169 (189)
151 cd01893 Miro1 Miro1 subfamily. 99.9 1.6E-21 3.4E-26 161.5 18.3 158 10-169 1-165 (166)
152 cd01867 Rab8_Rab10_Rab13_like 99.9 1.5E-22 3.3E-27 167.7 12.1 116 224-339 3-166 (167)
153 cd04136 Rap_like Rap-like subf 99.9 1.3E-22 2.9E-27 167.4 11.5 112 225-337 2-162 (163)
154 cd00157 Rho Rho (Ras homology) 99.9 2.5E-21 5.4E-26 161.1 18.8 155 10-165 1-170 (171)
155 cd04129 Rho2 Rho2 subfamily. 99.9 3.4E-21 7.4E-26 162.6 19.8 159 10-169 2-174 (187)
156 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 2.6E-22 5.7E-27 166.6 12.3 114 226-339 2-166 (170)
157 cd01865 Rab3 Rab3 subfamily. 99.9 3.1E-22 6.6E-27 165.6 12.7 115 225-339 2-164 (165)
158 cd04109 Rab28 Rab28 subfamily. 99.9 2.6E-22 5.7E-27 173.1 12.5 116 225-340 1-168 (215)
159 cd04157 Arl6 Arl6 subfamily. 99.9 7.4E-22 1.6E-26 162.8 14.8 151 11-165 1-161 (162)
160 PRK00089 era GTPase Era; Revie 99.9 4.4E-21 9.6E-26 173.4 21.1 201 5-217 1-212 (292)
161 cd04176 Rap2 Rap2 subgroup. T 99.9 2.4E-22 5.3E-27 165.9 11.9 113 224-337 1-162 (163)
162 cd04175 Rap1 Rap1 subgroup. T 99.9 2.7E-22 6E-27 165.8 12.0 114 224-338 1-163 (164)
163 cd04110 Rab35 Rab35 subfamily. 99.9 3.6E-22 7.8E-27 170.2 12.8 118 224-341 6-170 (199)
164 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 3.8E-22 8.2E-27 165.3 12.5 116 224-339 2-165 (166)
165 KOG0395|consensus 99.9 2.1E-21 4.6E-26 162.9 16.5 161 8-169 2-166 (196)
166 cd04127 Rab27A Rab27a subfamil 99.9 3.4E-22 7.3E-27 167.9 11.7 116 224-339 4-178 (180)
167 cd04147 Ras_dva Ras-dva subfam 99.9 4.7E-21 1E-25 163.2 18.8 157 11-168 1-163 (198)
168 cd04111 Rab39 Rab39 subfamily. 99.9 3.9E-22 8.4E-27 171.1 12.1 117 224-340 2-168 (211)
169 cd04124 RabL2 RabL2 subfamily. 99.9 7.9E-22 1.7E-26 162.4 13.3 116 225-340 1-160 (161)
170 KOG0083|consensus 99.9 4.2E-23 9.1E-28 153.4 5.0 156 14-169 2-161 (192)
171 cd04102 RabL3 RabL3 (Rab-like3 99.9 3.1E-21 6.8E-26 163.1 17.1 144 10-153 1-175 (202)
172 cd04119 RJL RJL (RabJ-Like) su 99.9 5.3E-22 1.2E-26 164.6 12.1 115 225-339 1-168 (168)
173 cd00876 Ras Ras family. The R 99.9 4.5E-21 9.8E-26 157.7 17.5 155 11-166 1-159 (160)
174 cd04125 RabA_like RabA-like su 99.9 9.3E-22 2E-26 166.3 13.0 116 225-340 1-164 (188)
175 cd04138 H_N_K_Ras_like H-Ras/N 99.9 6.7E-22 1.4E-26 163.0 11.9 112 225-337 2-161 (162)
176 cd04116 Rab9 Rab9 subfamily. 99.9 8E-22 1.7E-26 164.0 12.0 115 223-337 4-170 (170)
177 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 4.4E-21 9.6E-26 160.0 16.3 153 8-165 14-173 (174)
178 PF00071 Ras: Ras family; Int 99.9 7.9E-22 1.7E-26 162.6 11.6 113 226-338 1-161 (162)
179 cd04144 Ras2 Ras2 subfamily. 99.9 6.8E-22 1.5E-26 167.3 11.4 117 226-343 1-168 (190)
180 KOG0395|consensus 99.9 5.5E-22 1.2E-26 166.4 10.1 117 224-341 3-168 (196)
181 cd00879 Sar1 Sar1 subfamily. 99.9 5.1E-21 1.1E-25 162.2 15.9 155 7-166 17-189 (190)
182 cd04137 RheB Rheb (Ras Homolog 99.9 1.6E-20 3.4E-25 157.7 18.6 160 10-170 2-165 (180)
183 PLN03110 Rab GTPase; Provision 99.9 1.6E-21 3.4E-26 168.1 12.8 119 223-341 11-177 (216)
184 KOG0393|consensus 99.9 3.5E-22 7.5E-27 163.4 7.8 118 224-342 4-183 (198)
185 cd04132 Rho4_like Rho4-like su 99.9 1.7E-21 3.8E-26 164.6 12.1 116 225-341 1-170 (187)
186 cd04103 Centaurin_gamma Centau 99.9 2.1E-21 4.6E-26 158.9 12.0 106 225-337 1-158 (158)
187 cd01864 Rab19 Rab19 subfamily. 99.9 1.7E-21 3.8E-26 161.1 11.6 114 224-337 3-165 (165)
188 KOG0393|consensus 99.9 2.5E-21 5.5E-26 158.3 12.1 164 7-171 2-182 (198)
189 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.7E-21 5.8E-26 160.8 12.6 114 224-337 2-168 (170)
190 cd01866 Rab2 Rab2 subfamily. 99.9 2.7E-21 6E-26 160.4 12.5 116 224-339 4-167 (168)
191 cd04140 ARHI_like ARHI subfami 99.9 2.2E-21 4.8E-26 160.5 11.8 110 225-335 2-162 (165)
192 cd04156 ARLTS1 ARLTS1 subfamil 99.9 8.6E-21 1.9E-25 156.1 15.3 151 11-165 1-159 (160)
193 cd01892 Miro2 Miro2 subfamily. 99.9 4.7E-21 1E-25 159.0 13.8 118 222-339 2-167 (169)
194 PLN03108 Rab family protein; P 99.9 2.3E-21 4.9E-26 166.5 12.2 119 224-342 6-172 (210)
195 cd01868 Rab11_like Rab11-like. 99.9 2.7E-21 5.8E-26 160.0 11.8 114 224-337 3-164 (165)
196 cd04118 Rab24 Rab24 subfamily. 99.9 5.6E-21 1.2E-25 162.3 14.0 118 225-342 1-170 (193)
197 cd01897 NOG NOG1 is a nucleola 99.9 1.9E-20 4E-25 155.4 16.8 156 10-167 1-167 (168)
198 PLN03118 Rab family protein; P 99.9 3.6E-21 7.8E-26 165.6 12.9 120 223-343 13-182 (211)
199 cd04151 Arl1 Arl1 subfamily. 99.9 1.2E-20 2.7E-25 154.8 15.4 150 11-165 1-157 (158)
200 cd04106 Rab23_lke Rab23-like s 99.9 2.7E-21 5.9E-26 159.4 11.5 112 225-336 1-161 (162)
201 cd04112 Rab26 Rab26 subfamily. 99.9 3.8E-21 8.3E-26 162.8 12.6 118 225-342 1-167 (191)
202 cd04113 Rab4 Rab4 subfamily. 99.9 3.1E-21 6.8E-26 158.9 11.8 113 225-337 1-161 (161)
203 smart00174 RHO Rho (Ras homolo 99.9 4.8E-21 1E-25 159.9 12.9 112 227-339 1-173 (174)
204 cd04160 Arfrp1 Arfrp1 subfamil 99.9 8.3E-21 1.8E-25 157.4 14.1 151 11-165 1-166 (167)
205 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.1E-20 2.4E-25 156.5 14.7 150 11-165 1-166 (167)
206 cd04126 Rab20 Rab20 subfamily. 99.9 3.8E-21 8.2E-26 164.9 12.0 85 225-314 1-85 (220)
207 smart00173 RAS Ras subfamily o 99.9 4E-21 8.8E-26 158.7 11.6 113 225-338 1-162 (164)
208 PLN00223 ADP-ribosylation fact 99.9 2.7E-21 5.9E-26 161.9 10.3 113 223-340 16-180 (181)
209 cd04145 M_R_Ras_like M-Ras/R-R 99.9 6.1E-21 1.3E-25 157.6 12.2 113 224-337 2-163 (164)
210 cd04130 Wrch_1 Wrch-1 subfamil 99.9 8.9E-21 1.9E-25 158.1 13.2 110 225-335 1-171 (173)
211 PLN00023 GTP-binding protein; 99.9 3.2E-20 6.9E-25 164.1 17.2 139 5-143 17-189 (334)
212 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3E-20 6.6E-25 152.5 16.0 150 11-165 1-157 (158)
213 cd04177 RSR1 RSR1 subgroup. R 99.9 7.7E-21 1.7E-25 157.7 12.4 114 225-339 2-165 (168)
214 cd04142 RRP22 RRP22 subfamily. 99.9 9.6E-21 2.1E-25 160.7 13.0 117 225-341 1-177 (198)
215 smart00178 SAR Sar1p-like memb 99.8 3E-20 6.6E-25 156.2 15.9 155 7-166 15-183 (184)
216 cd04135 Tc10 TC10 subfamily. 99.8 1.5E-20 3.2E-25 157.0 13.4 112 225-337 1-173 (174)
217 KOG0081|consensus 99.8 9.2E-23 2E-27 156.3 -0.0 117 225-341 10-184 (219)
218 PF00025 Arf: ADP-ribosylation 99.8 5.8E-20 1.3E-24 153.0 16.7 156 7-167 12-175 (175)
219 cd04143 Rhes_like Rhes_like su 99.8 6.4E-21 1.4E-25 166.7 11.4 112 225-337 1-170 (247)
220 cd01890 LepA LepA subfamily. 99.8 5.6E-20 1.2E-24 154.2 16.3 154 11-167 2-176 (179)
221 cd01860 Rab5_related Rab5-rela 99.8 1.3E-20 2.7E-25 155.6 11.9 113 225-337 2-162 (163)
222 cd01873 RhoBTB RhoBTB subfamil 99.8 1.1E-20 2.5E-25 159.6 11.7 111 224-336 2-194 (195)
223 cd04149 Arf6 Arf6 subfamily. 99.8 4.9E-21 1.1E-25 158.6 9.3 109 222-335 7-167 (168)
224 cd04159 Arl10_like Arl10-like 99.8 7.1E-20 1.5E-24 150.1 16.1 150 12-165 2-158 (159)
225 PTZ00133 ADP-ribosylation fact 99.8 1E-20 2.2E-25 158.7 10.7 113 223-340 16-180 (182)
226 cd01898 Obg Obg subfamily. Th 99.8 5.8E-20 1.3E-24 152.8 15.0 154 11-166 2-169 (170)
227 PF02421 FeoB_N: Ferrous iron 99.8 2.5E-20 5.4E-25 148.9 11.9 147 10-163 1-156 (156)
228 cd04158 ARD1 ARD1 subfamily. 99.8 1.6E-20 3.6E-25 155.8 11.2 114 226-344 1-167 (169)
229 cd04150 Arf1_5_like Arf1-Arf5- 99.8 9.9E-21 2.1E-25 155.4 9.4 106 225-335 1-158 (159)
230 cd01861 Rab6 Rab6 subfamily. 99.8 2.5E-20 5.4E-25 153.5 11.6 112 225-336 1-160 (161)
231 KOG4252|consensus 99.8 2E-22 4.2E-27 157.7 -1.3 116 224-339 20-182 (246)
232 smart00177 ARF ARF-like small 99.8 2.1E-20 4.6E-25 155.9 10.9 110 223-337 12-173 (175)
233 cd01870 RhoA_like RhoA-like su 99.8 4.2E-20 9E-25 154.4 12.6 112 225-337 2-174 (175)
234 cd04155 Arl3 Arl3 subfamily. 99.8 2.2E-19 4.7E-24 149.8 16.5 154 7-165 12-172 (173)
235 cd04101 RabL4 RabL4 (Rab-like4 99.8 3.4E-20 7.5E-25 153.2 11.5 113 225-337 1-163 (164)
236 KOG0073|consensus 99.8 2.9E-19 6.3E-24 138.2 15.5 158 7-169 14-179 (185)
237 cd04148 RGK RGK subfamily. Th 99.8 4.7E-20 1E-24 159.3 12.5 117 225-343 1-168 (221)
238 cd01863 Rab18 Rab18 subfamily. 99.8 6.6E-20 1.4E-24 151.0 12.3 113 225-337 1-161 (161)
239 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 4.8E-20 1E-24 155.0 11.5 114 224-338 3-170 (183)
240 KOG1423|consensus 99.8 1.1E-18 2.4E-23 148.9 19.3 226 7-243 70-357 (379)
241 PRK12298 obgE GTPase CgtA; Rev 99.8 4.5E-19 9.7E-24 164.2 18.0 185 11-205 161-362 (390)
242 cd01862 Rab7 Rab7 subfamily. 99.8 1.1E-19 2.4E-24 151.3 12.3 116 225-340 1-169 (172)
243 smart00175 RAB Rab subfamily o 99.8 1.2E-19 2.6E-24 149.9 12.2 115 225-339 1-163 (164)
244 KOG4252|consensus 99.8 7.9E-21 1.7E-25 148.7 4.0 162 8-169 19-182 (246)
245 TIGR00231 small_GTP small GTP- 99.8 2.5E-18 5.5E-23 140.7 18.0 155 9-163 1-159 (161)
246 cd04171 SelB SelB subfamily. 99.8 1E-18 2.3E-23 144.2 15.7 154 10-165 1-163 (164)
247 cd04146 RERG_RasL11_like RERG/ 99.8 1.5E-19 3.2E-24 149.5 10.6 112 226-338 1-164 (165)
248 cd04114 Rab30 Rab30 subfamily. 99.8 3.5E-19 7.5E-24 147.9 12.4 114 224-337 7-168 (169)
249 PRK12299 obgE GTPase CgtA; Rev 99.8 1.1E-18 2.3E-23 158.6 16.2 157 11-169 160-329 (335)
250 cd04147 Ras_dva Ras-dva subfam 99.8 1.8E-19 3.9E-24 153.4 10.4 113 226-339 1-164 (198)
251 cd04123 Rab21 Rab21 subfamily. 99.8 4.2E-19 9.2E-24 146.2 11.9 113 225-337 1-161 (162)
252 cd04129 Rho2 Rho2 subfamily. 99.8 9.6E-19 2.1E-23 147.6 13.8 118 225-343 2-178 (187)
253 cd01878 HflX HflX subfamily. 99.8 2.1E-18 4.6E-23 147.7 15.8 154 8-166 40-203 (204)
254 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 2E-19 4.4E-24 148.4 8.3 84 227-314 2-85 (164)
255 KOG0070|consensus 99.8 1.9E-18 4.1E-23 137.7 13.4 158 7-169 15-179 (181)
256 TIGR02528 EutP ethanolamine ut 99.8 1.1E-18 2.4E-23 140.5 12.5 133 11-164 2-141 (142)
257 cd01891 TypA_BipA TypA (tyrosi 99.8 2.2E-18 4.9E-23 146.2 14.4 144 11-157 4-171 (194)
258 cd04157 Arl6 Arl6 subfamily. 99.8 3.1E-19 6.6E-24 147.1 8.6 107 226-336 1-162 (162)
259 cd04154 Arl2 Arl2 subfamily. 99.8 4.4E-19 9.6E-24 147.8 9.5 108 223-335 13-172 (173)
260 cd04139 RalA_RalB RalA/RalB su 99.8 1.1E-18 2.4E-23 144.0 11.6 114 225-339 1-163 (164)
261 PTZ00099 rab6; Provisional 99.8 1.1E-17 2.4E-22 138.9 17.3 140 32-171 3-145 (176)
262 PRK04213 GTP-binding protein; 99.8 2.5E-18 5.5E-23 146.9 13.9 159 1-169 1-193 (201)
263 cd04164 trmE TrmE (MnmE, ThdF, 99.8 5.8E-18 1.3E-22 138.6 14.7 147 10-167 2-156 (157)
264 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 8.1E-19 1.8E-23 146.3 9.7 107 224-335 15-173 (174)
265 TIGR00157 ribosome small subun 99.8 5.4E-18 1.2E-22 148.0 15.1 154 69-287 24-185 (245)
266 cd01893 Miro1 Miro1 subfamily. 99.8 1.8E-18 3.8E-23 143.2 11.3 113 225-339 1-165 (166)
267 COG1100 GTPase SAR1 and relate 99.8 1.4E-17 3.1E-22 144.3 17.5 164 7-170 3-187 (219)
268 cd00157 Rho Rho (Ras homology) 99.8 3.6E-18 7.7E-23 142.1 13.2 110 225-335 1-170 (171)
269 cd01881 Obg_like The Obg-like 99.8 3.3E-18 7.2E-23 142.9 12.8 151 14-166 1-175 (176)
270 TIGR00450 mnmE_trmE_thdF tRNA 99.8 7.9E-18 1.7E-22 158.6 16.4 152 8-169 202-361 (442)
271 TIGR03156 GTP_HflX GTP-binding 99.8 5.3E-18 1.1E-22 155.4 14.2 152 9-166 189-350 (351)
272 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.3E-18 2.9E-23 144.0 9.0 105 226-335 1-166 (167)
273 cd01879 FeoB Ferrous iron tran 99.8 1.2E-17 2.5E-22 137.0 14.5 147 14-167 1-156 (158)
274 TIGR02729 Obg_CgtA Obg family 99.8 1.1E-17 2.5E-22 151.8 15.7 156 10-167 158-328 (329)
275 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.6E-17 5.6E-22 136.4 16.3 152 11-167 2-165 (168)
276 KOG0071|consensus 99.8 1.4E-17 2.9E-22 125.3 12.9 156 7-167 15-177 (180)
277 KOG0075|consensus 99.8 3.7E-18 8.1E-23 129.4 9.8 155 9-167 20-181 (186)
278 PF08477 Miro: Miro-like prote 99.8 1E-17 2.3E-22 130.5 12.7 114 11-124 1-119 (119)
279 cd01894 EngA1 EngA1 subfamily. 99.8 1.3E-17 2.8E-22 136.5 13.9 148 13-166 1-156 (157)
280 cd04137 RheB Rheb (Ras Homolog 99.8 5.8E-18 1.3E-22 142.1 11.6 117 225-342 2-167 (180)
281 PRK05291 trmE tRNA modificatio 99.8 1E-17 2.2E-22 158.9 14.4 150 8-169 214-371 (449)
282 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2.8E-18 6.1E-23 141.1 9.3 106 226-335 1-159 (160)
283 PRK12297 obgE GTPase CgtA; Rev 99.8 3.9E-17 8.4E-22 152.0 17.7 158 11-172 160-331 (424)
284 cd00154 Rab Rab family. Rab G 99.8 6E-18 1.3E-22 138.6 10.7 111 225-335 1-159 (159)
285 cd04102 RabL3 RabL3 (Rab-like3 99.8 4.2E-18 9E-23 144.1 9.9 90 225-314 1-95 (202)
286 PF00025 Arf: ADP-ribosylation 99.7 1.2E-17 2.6E-22 139.1 12.0 111 222-337 12-175 (175)
287 PTZ00099 rab6; Provisional 99.7 6.2E-18 1.3E-22 140.5 10.1 97 247-343 3-147 (176)
288 cd04151 Arl1 Arl1 subfamily. 99.7 4.1E-18 8.8E-23 139.8 8.9 105 226-335 1-157 (158)
289 cd00881 GTP_translation_factor 99.7 3.2E-17 7E-22 138.6 14.5 154 11-167 1-186 (189)
290 cd00879 Sar1 Sar1 subfamily. 99.7 6.3E-18 1.4E-22 143.1 9.7 110 223-337 18-190 (190)
291 cd00882 Ras_like_GTPase Ras-li 99.7 7.2E-17 1.6E-21 130.9 15.7 150 14-164 1-156 (157)
292 cd00876 Ras Ras family. The R 99.7 7.7E-18 1.7E-22 138.3 9.7 111 226-337 1-160 (160)
293 PRK00454 engB GTP-binding prot 99.7 1E-16 2.2E-21 136.5 16.9 155 7-167 22-193 (196)
294 cd04163 Era Era subfamily. Er 99.7 1.3E-16 2.8E-21 131.8 16.9 155 8-166 2-167 (168)
295 PRK03003 GTP-binding protein D 99.7 4.4E-17 9.6E-22 156.3 15.9 158 8-169 210-383 (472)
296 cd01888 eIF2_gamma eIF2-gamma 99.7 8.1E-17 1.8E-21 137.4 15.9 159 10-169 1-200 (203)
297 PRK12296 obgE GTPase CgtA; Rev 99.7 8.2E-17 1.8E-21 151.6 17.1 158 10-169 160-341 (500)
298 COG0486 ThdF Predicted GTPase 99.7 3.7E-17 8E-22 149.0 14.2 155 8-170 216-378 (454)
299 cd01889 SelB_euk SelB subfamil 99.7 5.3E-17 1.1E-21 137.6 14.2 156 10-168 1-186 (192)
300 TIGR01393 lepA GTP-binding pro 99.7 6.7E-17 1.5E-21 157.7 16.8 155 10-167 4-179 (595)
301 cd01895 EngA2 EngA2 subfamily. 99.7 1.3E-16 2.8E-21 132.8 16.2 154 9-166 2-173 (174)
302 KOG0073|consensus 99.7 2E-17 4.2E-22 128.2 10.0 112 223-339 15-179 (185)
303 PLN00023 GTP-binding protein; 99.7 1.8E-17 3.8E-22 146.8 11.0 94 221-314 18-124 (334)
304 smart00178 SAR Sar1p-like memb 99.7 1.5E-17 3.3E-22 139.9 9.8 110 223-337 16-184 (184)
305 TIGR03594 GTPase_EngA ribosome 99.7 1.5E-16 3.2E-21 151.9 17.8 158 8-169 171-345 (429)
306 PRK11058 GTPase HflX; Provisio 99.7 8.3E-17 1.8E-21 150.8 15.4 155 10-169 198-363 (426)
307 cd01859 MJ1464 MJ1464. This f 99.7 3.1E-16 6.7E-21 128.2 16.9 153 73-283 4-156 (156)
308 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.6E-17 3.5E-22 136.2 9.3 105 226-335 1-157 (158)
309 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.3E-17 2.9E-22 138.1 8.3 106 226-335 1-166 (167)
310 PRK15467 ethanolamine utilizat 99.7 1.2E-16 2.5E-21 130.7 13.7 139 11-168 3-147 (158)
311 TIGR03598 GTPase_YsxC ribosome 99.7 1.2E-16 2.6E-21 133.8 14.1 144 7-156 16-178 (179)
312 PF00009 GTP_EFTU: Elongation 99.7 8.2E-17 1.8E-21 135.8 12.3 158 8-168 2-187 (188)
313 cd01890 LepA LepA subfamily. 99.7 2.7E-17 5.9E-22 137.9 8.8 112 226-337 2-176 (179)
314 PRK09554 feoB ferrous iron tra 99.7 3.9E-16 8.4E-21 155.9 17.9 154 7-167 1-167 (772)
315 KOG1673|consensus 99.7 2.4E-16 5.3E-21 120.7 12.1 162 8-169 19-187 (205)
316 COG1100 GTPase SAR1 and relate 99.7 8.5E-17 1.8E-21 139.4 10.8 118 224-341 5-188 (219)
317 PRK12289 GTPase RsgA; Reviewed 99.7 4.1E-16 9E-21 142.0 15.5 151 73-288 81-239 (352)
318 COG1160 Predicted GTPases [Gen 99.7 6E-16 1.3E-20 140.7 15.9 157 8-168 177-351 (444)
319 PRK00093 GTP-binding protein D 99.7 1E-15 2.2E-20 146.3 18.4 157 8-168 172-344 (435)
320 cd04155 Arl3 Arl3 subfamily. 99.7 7.3E-17 1.6E-21 134.5 9.2 109 223-336 13-173 (173)
321 cd04159 Arl10_like Arl10-like 99.7 1.1E-16 2.4E-21 131.1 9.4 105 227-335 2-158 (159)
322 cd01855 YqeH YqeH. YqeH is an 99.7 6.3E-16 1.4E-20 130.7 14.2 151 71-283 24-190 (190)
323 TIGR00487 IF-2 translation ini 99.7 1.5E-15 3.3E-20 147.5 18.2 153 7-165 85-247 (587)
324 KOG0070|consensus 99.7 1.5E-16 3.3E-21 126.9 8.5 116 220-340 13-180 (181)
325 KOG0074|consensus 99.7 4.4E-16 9.5E-21 117.4 10.5 158 5-166 13-177 (185)
326 PRK05306 infB translation init 99.7 1.2E-15 2.7E-20 151.5 16.7 154 7-165 288-449 (787)
327 cd01858 NGP_1 NGP-1. Autoanti 99.7 5.4E-15 1.2E-19 120.9 17.8 153 77-283 4-157 (157)
328 cd01856 YlqF YlqF. Proteins o 99.7 1.4E-15 3.1E-20 126.1 14.4 160 73-283 11-170 (171)
329 cd01857 HSR1_MMR1 HSR1/MMR1. 99.7 2.3E-15 5E-20 120.7 14.9 133 76-283 6-138 (141)
330 PRK12288 GTPase RsgA; Reviewed 99.7 2.4E-15 5.2E-20 137.1 16.8 146 78-287 117-271 (347)
331 PRK05433 GTP-binding protein L 99.7 1.9E-15 4.2E-20 147.7 16.7 156 10-168 8-184 (600)
332 PRK09518 bifunctional cytidyla 99.7 1.2E-15 2.6E-20 153.1 15.7 158 8-169 449-622 (712)
333 PRK12317 elongation factor 1-a 99.7 1.5E-15 3.2E-20 144.3 15.2 154 7-160 4-197 (425)
334 CHL00189 infB translation init 99.7 2.3E-15 4.9E-20 148.3 15.7 156 7-167 242-409 (742)
335 TIGR00437 feoB ferrous iron tr 99.7 2.4E-15 5.3E-20 146.9 15.7 145 16-167 1-154 (591)
336 cd01896 DRG The developmentall 99.7 3.7E-15 8.1E-20 129.4 15.2 150 11-167 2-225 (233)
337 cd00880 Era_like Era (E. coli 99.6 2.9E-15 6.2E-20 122.6 13.7 149 14-166 1-162 (163)
338 cd04166 CysN_ATPS CysN_ATPS su 99.6 9.9E-16 2.2E-20 131.2 11.3 146 11-158 1-184 (208)
339 COG0218 Predicted GTPase [Gene 99.6 1.2E-14 2.7E-19 118.6 16.4 155 8-168 23-197 (200)
340 KOG3883|consensus 99.6 1.4E-14 3.1E-19 110.9 15.5 162 8-169 8-176 (198)
341 PF10662 PduV-EutP: Ethanolami 99.6 2.5E-15 5.5E-20 117.3 11.7 134 11-164 3-142 (143)
342 TIGR02528 EutP ethanolamine ut 99.6 2.4E-16 5.1E-21 126.9 6.1 94 226-334 2-141 (142)
343 KOG0075|consensus 99.6 1.5E-16 3.2E-21 120.8 4.1 110 224-337 20-181 (186)
344 KOG0076|consensus 99.6 7.8E-16 1.7E-20 120.6 8.2 158 8-170 16-189 (197)
345 COG0370 FeoB Fe2+ transport sy 99.6 3.4E-15 7.4E-20 142.0 14.2 158 7-171 1-167 (653)
346 cd04105 SR_beta Signal recogni 99.6 3.2E-15 6.9E-20 127.4 12.7 118 11-129 2-125 (203)
347 TIGR00475 selB selenocysteine- 99.6 7.1E-15 1.5E-19 143.5 16.8 155 10-169 1-167 (581)
348 TIGR03596 GTPase_YlqF ribosome 99.6 9.8E-15 2.1E-19 130.3 15.4 161 73-283 13-173 (276)
349 cd01884 EF_Tu EF-Tu subfamily. 99.6 1.7E-14 3.7E-19 121.6 15.9 146 8-156 1-171 (195)
350 cd01876 YihA_EngB The YihA (En 99.6 1.3E-14 2.8E-19 120.1 15.1 150 11-166 1-169 (170)
351 cd04171 SelB SelB subfamily. 99.6 1.6E-15 3.4E-20 125.1 9.2 109 226-335 2-163 (164)
352 KOG4423|consensus 99.6 1.2E-17 2.5E-22 132.1 -3.6 118 224-341 25-197 (229)
353 cd01854 YjeQ_engC YjeQ/EngC. 99.6 1E-14 2.3E-19 130.5 14.8 148 76-287 73-227 (287)
354 PRK15494 era GTPase Era; Provi 99.6 2E-15 4.4E-20 138.2 10.3 120 223-345 51-223 (339)
355 PRK10218 GTP-binding protein; 99.6 2.4E-14 5.2E-19 139.3 18.2 156 9-167 5-194 (607)
356 TIGR00483 EF-1_alpha translati 99.6 1.1E-14 2.4E-19 138.3 15.3 155 6-160 4-199 (426)
357 KOG1673|consensus 99.6 2.1E-15 4.5E-20 115.7 8.2 118 223-340 19-188 (205)
358 PRK09563 rbgA GTPase YlqF; Rev 99.6 2.2E-14 4.7E-19 128.7 15.1 162 73-284 16-177 (287)
359 cd01897 NOG NOG1 is a nucleola 99.6 5.3E-15 1.1E-19 122.6 10.4 111 226-338 2-168 (168)
360 COG2229 Predicted GTPase [Gene 99.6 4.3E-14 9.3E-19 112.7 14.5 160 5-166 6-176 (187)
361 cd01849 YlqF_related_GTPase Yl 99.6 1.5E-13 3.2E-18 112.1 17.8 153 83-283 1-155 (155)
362 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 4.8E-14 1E-18 119.8 15.3 159 10-170 1-186 (196)
363 PRK00098 GTPase RsgA; Reviewed 99.6 4.1E-14 8.8E-19 127.4 14.6 144 78-286 77-229 (298)
364 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 9E-15 1.9E-19 121.1 9.5 112 226-337 2-165 (168)
365 TIGR01394 TypA_BipA GTP-bindin 99.6 3.6E-14 7.9E-19 138.3 15.0 154 11-167 3-190 (594)
366 TIGR00231 small_GTP small GTP- 99.6 1.5E-14 3.3E-19 118.1 10.7 109 225-333 2-159 (161)
367 COG1084 Predicted GTPase [Gene 99.6 9.5E-14 2.1E-18 120.8 15.5 157 8-167 167-335 (346)
368 TIGR00491 aIF-2 translation in 99.6 5.8E-14 1.3E-18 136.3 15.7 156 8-166 3-214 (590)
369 KOG0076|consensus 99.6 2.5E-15 5.5E-20 117.7 4.9 111 225-340 18-189 (197)
370 TIGR03597 GTPase_YqeH ribosome 99.6 6.2E-14 1.3E-18 129.5 14.7 155 69-286 51-217 (360)
371 KOG0074|consensus 99.6 1.4E-14 3.1E-19 109.3 8.4 111 222-336 15-177 (185)
372 cd01883 EF1_alpha Eukaryotic e 99.6 2.9E-14 6.4E-19 123.1 11.6 146 11-157 1-194 (219)
373 TIGR03680 eif2g_arch translati 99.6 6.5E-14 1.4E-18 131.8 14.8 159 7-167 2-195 (406)
374 TIGR00436 era GTP-binding prot 99.6 1.4E-14 3.1E-19 129.1 9.7 115 226-341 2-167 (270)
375 cd01898 Obg Obg subfamily. Th 99.6 1E-14 2.2E-19 121.1 7.8 108 226-336 2-169 (170)
376 KOG1191|consensus 99.5 3.9E-14 8.5E-19 129.0 11.6 161 8-169 267-451 (531)
377 cd04104 p47_IIGP_like p47 (47- 99.5 2.2E-13 4.8E-18 115.6 15.6 154 9-169 1-185 (197)
378 PRK05291 trmE tRNA modificatio 99.5 4.6E-14 9.9E-19 134.1 12.3 116 223-339 214-371 (449)
379 cd01878 HflX HflX subfamily. 99.5 2.8E-14 6.1E-19 122.2 9.7 113 222-337 39-204 (204)
380 cd04165 GTPBP1_like GTPBP1-lik 99.5 2.2E-13 4.7E-18 117.4 15.1 152 11-165 1-220 (224)
381 PRK04004 translation initiatio 99.5 2.6E-13 5.5E-18 132.4 17.1 155 5-165 2-215 (586)
382 PRK04000 translation initiatio 99.5 1.6E-13 3.4E-18 129.1 15.1 164 1-167 1-200 (411)
383 cd01891 TypA_BipA TypA (tyrosi 99.5 1.2E-14 2.7E-19 123.3 7.0 85 225-309 3-101 (194)
384 cd04168 TetM_like Tet(M)-like 99.5 1.2E-13 2.5E-18 120.2 12.8 135 11-148 1-151 (237)
385 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 5.9E-15 1.3E-19 126.2 4.5 157 11-206 32-188 (254)
386 PRK12735 elongation factor Tu; 99.5 2.5E-13 5.4E-18 127.4 15.8 157 7-166 10-201 (396)
387 PRK10512 selenocysteinyl-tRNA- 99.5 3.6E-13 7.9E-18 132.0 16.9 155 10-167 1-165 (614)
388 KOG1489|consensus 99.5 2.7E-13 6E-18 116.9 13.8 152 11-165 198-364 (366)
389 KOG0072|consensus 99.5 5.6E-14 1.2E-18 106.5 8.3 157 8-169 17-180 (182)
390 COG1162 Predicted GTPases [Gen 99.5 4E-13 8.6E-18 117.2 14.8 150 74-287 72-230 (301)
391 KOG3883|consensus 99.5 1.3E-13 2.9E-18 105.6 10.2 120 223-343 8-180 (198)
392 TIGR01393 lepA GTP-binding pro 99.5 3.6E-14 7.8E-19 138.7 9.1 115 225-339 4-181 (595)
393 KOG0071|consensus 99.5 8.2E-14 1.8E-18 105.1 8.8 114 219-337 12-177 (180)
394 PRK12736 elongation factor Tu; 99.5 4.8E-13 1E-17 125.4 16.1 158 7-167 10-200 (394)
395 cd01894 EngA1 EngA1 subfamily. 99.5 3.5E-14 7.5E-19 116.1 7.2 109 228-337 1-157 (157)
396 KOG0462|consensus 99.5 4.7E-13 1E-17 123.2 14.8 177 10-203 61-256 (650)
397 cd04178 Nucleostemin_like Nucl 99.5 1.2E-12 2.5E-17 107.9 15.8 172 83-283 1-172 (172)
398 PRK13796 GTPase YqeH; Provisio 99.5 4.5E-13 9.8E-18 123.9 14.8 143 80-285 67-222 (365)
399 cd04169 RF3 RF3 subfamily. Pe 99.5 5.5E-13 1.2E-17 118.0 14.5 117 10-129 3-139 (267)
400 TIGR00485 EF-Tu translation el 99.5 6.1E-13 1.3E-17 124.9 15.6 146 6-154 9-179 (394)
401 cd01879 FeoB Ferrous iron tran 99.5 1.2E-13 2.6E-18 113.1 9.5 106 229-336 1-155 (158)
402 PF08477 Miro: Miro-like prote 99.5 7.7E-14 1.7E-18 108.5 8.0 89 226-314 1-91 (119)
403 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.2E-13 2.5E-18 130.5 10.7 116 223-340 202-362 (442)
404 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.7E-13 3.7E-18 111.9 10.3 112 225-337 2-156 (157)
405 CHL00071 tufA elongation facto 99.5 8E-13 1.7E-17 124.6 16.1 146 7-155 10-180 (409)
406 PRK00454 engB GTP-binding prot 99.5 1.1E-13 2.3E-18 117.8 9.3 112 223-337 23-193 (196)
407 cd01899 Ygr210 Ygr210 subfamil 99.5 8.3E-13 1.8E-17 119.1 14.9 62 113-175 214-276 (318)
408 cd01886 EF-G Elongation factor 99.5 5.2E-13 1.1E-17 118.2 12.9 114 11-127 1-130 (270)
409 cd04167 Snu114p Snu114p subfam 99.5 1E-12 2.2E-17 113.1 14.4 113 11-126 2-136 (213)
410 PRK04213 GTP-binding protein; 99.5 6.2E-14 1.4E-18 119.7 6.7 112 223-341 8-195 (201)
411 PF01926 MMR_HSR1: 50S ribosom 99.5 3.1E-13 6.6E-18 104.6 9.9 107 11-122 1-116 (116)
412 TIGR03156 GTP_HflX GTP-binding 99.5 1.5E-13 3.2E-18 126.1 8.7 110 223-336 188-350 (351)
413 cd00881 GTP_translation_factor 99.5 1.3E-13 2.9E-18 116.4 7.8 113 226-338 1-187 (189)
414 COG1126 GlnQ ABC-type polar am 99.5 9.2E-14 2E-18 114.0 6.5 52 150-206 134-185 (240)
415 PRK09602 translation-associate 99.5 5.8E-12 1.3E-16 117.1 18.4 178 10-201 2-294 (396)
416 COG1161 Predicted GTPases [Gen 99.5 1.3E-12 2.7E-17 118.6 13.6 170 65-284 17-188 (322)
417 COG0486 ThdF Predicted GTPase 99.4 7.6E-13 1.6E-17 121.0 12.0 118 222-340 215-378 (454)
418 PRK15467 ethanolamine utilizat 99.4 1E-13 2.3E-18 113.2 5.9 100 226-338 3-147 (158)
419 TIGR02034 CysN sulfate adenyly 99.4 1.3E-12 2.7E-17 123.0 13.8 147 10-158 1-187 (406)
420 PRK05124 cysN sulfate adenylyl 99.4 1.1E-12 2.4E-17 125.2 13.6 151 7-159 25-216 (474)
421 KOG4423|consensus 99.4 1.1E-14 2.4E-19 115.3 -0.0 163 9-171 25-197 (229)
422 COG3638 ABC-type phosphate/pho 99.4 2E-13 4.2E-18 113.6 7.1 60 143-207 138-197 (258)
423 cd04170 EF-G_bact Elongation f 99.4 1.4E-12 2.9E-17 116.4 12.8 146 11-159 1-164 (268)
424 cd00882 Ras_like_GTPase Ras-li 99.4 4E-13 8.6E-18 108.7 8.4 106 229-335 1-157 (157)
425 KOG0077|consensus 99.4 3.9E-13 8.5E-18 104.7 7.8 151 8-163 19-188 (193)
426 TIGR03598 GTPase_YsxC ribosome 99.4 2.7E-13 5.8E-18 113.5 7.5 90 222-314 16-118 (179)
427 KOG1191|consensus 99.4 6.6E-13 1.4E-17 121.1 10.3 119 223-342 267-454 (531)
428 COG1116 TauB ABC-type nitrate/ 99.4 2.4E-13 5.1E-18 114.9 6.9 53 150-207 128-180 (248)
429 PRK00049 elongation factor Tu; 99.4 4.8E-12 1E-16 118.7 16.6 146 6-154 9-179 (396)
430 COG2262 HflX GTPases [General 99.4 4.3E-12 9.3E-17 114.1 15.0 157 9-170 192-358 (411)
431 TIGR00487 IF-2 translation ini 99.4 9.5E-13 2.1E-17 128.1 11.5 112 223-335 86-247 (587)
432 PRK12299 obgE GTPase CgtA; Rev 99.4 4.5E-13 9.8E-18 121.9 8.7 115 225-341 159-331 (335)
433 PLN03126 Elongation factor Tu; 99.4 3.6E-12 7.7E-17 121.3 15.0 147 6-155 78-249 (478)
434 cd01889 SelB_euk SelB subfamil 99.4 3.6E-13 7.9E-18 114.0 7.4 114 225-338 1-186 (192)
435 PRK05506 bifunctional sulfate 99.4 1.8E-12 3.9E-17 128.9 13.5 150 7-158 22-211 (632)
436 COG1120 FepC ABC-type cobalami 99.4 1.5E-13 3.3E-18 118.3 4.5 154 11-206 30-187 (258)
437 cd01885 EF2 EF2 (for archaea a 99.4 1.2E-12 2.5E-17 112.4 9.8 113 11-126 2-138 (222)
438 PLN00043 elongation factor 1-a 99.4 4.2E-12 9.1E-17 120.3 14.6 152 5-158 3-203 (447)
439 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 7.4E-12 1.6E-16 107.3 14.6 158 11-170 1-178 (232)
440 cd01850 CDC_Septin CDC/Septin. 99.4 6.4E-12 1.4E-16 111.8 14.7 138 9-150 4-184 (276)
441 PLN03127 Elongation factor Tu; 99.4 1.2E-11 2.7E-16 117.0 17.0 119 6-127 58-191 (447)
442 cd04105 SR_beta Signal recogni 99.4 1.3E-12 2.8E-17 111.4 9.2 88 226-314 2-91 (203)
443 COG1159 Era GTPase [General fu 99.4 1.5E-12 3.2E-17 112.5 9.4 125 223-348 5-182 (298)
444 PRK00089 era GTPase Era; Revie 99.4 2.3E-12 5E-17 116.5 11.2 117 223-340 4-173 (292)
445 cd01895 EngA2 EngA2 subfamily. 99.4 1.6E-12 3.4E-17 108.1 9.3 111 224-335 2-172 (174)
446 PF02421 FeoB_N: Ferrous iron 99.4 1.4E-12 3.1E-17 104.4 8.3 107 225-333 1-156 (156)
447 PRK13351 elongation factor G; 99.4 7.8E-12 1.7E-16 125.8 14.9 117 8-127 7-139 (687)
448 PRK11058 GTPase HflX; Provisio 99.4 1.1E-12 2.3E-17 123.3 8.1 113 225-340 198-364 (426)
449 PF09439 SRPRB: Signal recogni 99.4 2.4E-12 5.2E-17 105.4 9.0 119 9-130 3-129 (181)
450 PTZ00141 elongation factor 1- 99.4 1.4E-11 3E-16 116.9 15.5 151 6-158 4-203 (446)
451 COG1136 SalX ABC-type antimicr 99.4 1.8E-12 3.9E-17 109.4 8.4 51 151-206 141-191 (226)
452 PF04548 AIG1: AIG1 family; I 99.4 3.7E-12 7.9E-17 109.3 10.5 161 10-170 1-188 (212)
453 TIGR00484 EF-G translation elo 99.4 1E-11 2.2E-16 124.7 14.4 118 8-128 9-142 (689)
454 PRK05306 infB translation init 99.4 4.2E-12 9.2E-17 126.6 11.3 112 222-335 288-449 (787)
455 cd01881 Obg_like The Obg-like 99.4 1.6E-12 3.4E-17 108.4 7.0 106 229-336 1-175 (176)
456 COG1163 DRG Predicted GTPase [ 99.3 2.1E-11 4.5E-16 106.0 13.7 153 9-168 63-289 (365)
457 cd04163 Era Era subfamily. Er 99.3 5.7E-12 1.2E-16 103.9 10.0 112 224-336 3-167 (168)
458 COG0536 Obg Predicted GTPase [ 99.3 1.8E-11 3.8E-16 107.3 13.0 158 11-170 161-335 (369)
459 PRK00741 prfC peptide chain re 99.3 1.3E-11 2.7E-16 119.1 12.9 119 8-129 9-147 (526)
460 CHL00189 infB translation init 99.3 3E-12 6.4E-17 126.5 8.6 114 223-336 243-408 (742)
461 TIGR02729 Obg_CgtA Obg family 99.3 4.1E-12 8.9E-17 115.6 8.4 110 225-337 158-328 (329)
462 PRK12739 elongation factor G; 99.3 2.3E-11 5E-16 122.0 14.6 117 8-127 7-139 (691)
463 COG3596 Predicted GTPase [Gene 99.3 2.1E-11 4.6E-16 103.8 11.9 161 7-170 37-224 (296)
464 PRK05433 GTP-binding protein L 99.3 4.2E-12 9E-17 124.4 8.6 115 225-339 8-185 (600)
465 COG5256 TEF1 Translation elong 99.3 2.9E-11 6.2E-16 108.7 13.1 152 7-158 5-201 (428)
466 COG0481 LepA Membrane GTPase L 99.3 2.9E-11 6.3E-16 109.8 12.9 155 10-167 10-185 (603)
467 cd01896 DRG The developmentall 99.3 1.3E-11 2.8E-16 107.3 10.4 84 226-311 2-92 (233)
468 TIGR00503 prfC peptide chain r 99.3 2.4E-11 5.2E-16 117.2 13.3 117 8-127 10-146 (527)
469 KOG0072|consensus 99.3 1.2E-12 2.7E-17 99.3 3.4 113 223-340 17-181 (182)
470 PRK09866 hypothetical protein; 99.3 1.3E-10 2.9E-15 110.7 17.8 108 58-166 230-351 (741)
471 COG4917 EutP Ethanolamine util 99.3 9.9E-12 2.2E-16 92.3 8.0 134 11-166 3-144 (148)
472 TIGR00475 selB selenocysteine- 99.3 1.1E-11 2.3E-16 121.4 10.5 112 226-339 2-167 (581)
473 COG2884 FtsE Predicted ATPase 99.3 6E-12 1.3E-16 101.1 6.8 154 12-206 31-186 (223)
474 COG1125 OpuBA ABC-type proline 99.3 2.2E-12 4.7E-17 108.4 4.4 153 11-207 29-185 (309)
475 PRK00007 elongation factor G; 99.3 3.7E-11 8.1E-16 120.5 13.7 119 8-129 9-143 (693)
476 COG1131 CcmA ABC-type multidru 99.3 2.1E-11 4.6E-16 109.4 10.6 152 11-206 33-185 (293)
477 PRK12297 obgE GTPase CgtA; Rev 99.3 1.7E-11 3.6E-16 114.6 10.2 116 225-342 159-331 (424)
478 COG1137 YhbG ABC-type (unclass 99.3 1.2E-12 2.6E-17 106.0 2.0 154 11-206 32-188 (243)
479 PTZ00327 eukaryotic translatio 99.3 8.2E-11 1.8E-15 111.3 14.5 159 7-167 32-232 (460)
480 TIGR00437 feoB ferrous iron tr 99.3 2E-11 4.3E-16 119.6 9.8 105 231-337 1-154 (591)
481 COG0532 InfB Translation initi 99.3 1.5E-10 3.2E-15 107.7 14.9 155 7-166 3-168 (509)
482 cd01888 eIF2_gamma eIF2-gamma 99.3 1.9E-11 4.1E-16 104.3 8.5 67 273-339 83-200 (203)
483 KOG1424|consensus 99.3 1.1E-10 2.4E-15 107.3 13.5 193 77-284 170-370 (562)
484 KOG1423|consensus 99.3 4.4E-11 9.6E-16 102.9 10.2 127 220-347 68-280 (379)
485 cd01853 Toc34_like Toc34-like 99.2 1E-10 2.2E-15 102.1 12.3 119 7-127 29-163 (249)
486 TIGR00991 3a0901s02IAP34 GTP-b 99.2 1.2E-10 2.6E-15 103.0 12.3 120 6-126 35-166 (313)
487 COG1135 AbcC ABC-type metal io 99.2 1.9E-10 4.1E-15 99.8 12.7 154 11-206 34-190 (339)
488 cd00880 Era_like Era (E. coli 99.2 3.5E-11 7.7E-16 98.2 7.8 108 229-337 1-163 (163)
489 PRK10218 GTP-binding protein; 99.2 6E-11 1.3E-15 115.8 10.5 117 224-340 5-197 (607)
490 cd01876 YihA_EngB The YihA (En 99.2 3.8E-11 8.3E-16 99.1 7.7 108 226-336 1-169 (170)
491 PRK13537 nodulation ABC transp 99.2 2.2E-11 4.7E-16 110.4 6.6 54 147-205 133-186 (306)
492 COG1124 DppF ABC-type dipeptid 99.2 9.6E-11 2.1E-15 98.4 9.8 53 150-207 139-191 (252)
493 COG3839 MalK ABC-type sugar tr 99.2 8.8E-11 1.9E-15 105.3 10.2 151 11-206 31-182 (338)
494 TIGR00491 aIF-2 translation in 99.2 2.8E-11 6.1E-16 117.7 7.4 115 225-339 5-173 (590)
495 COG0410 LivF ABC-type branched 99.2 1.3E-10 2.9E-15 96.8 10.2 153 11-206 31-185 (237)
496 PRK13536 nodulation factor exp 99.2 2.6E-11 5.6E-16 111.1 6.7 54 147-205 167-220 (340)
497 KOG2484|consensus 99.2 1.2E-10 2.6E-15 103.8 10.5 167 76-283 141-307 (435)
498 COG4555 NatA ABC-type Na+ tran 99.2 8.8E-11 1.9E-15 95.4 8.7 147 11-206 30-182 (245)
499 PRK09554 feoB ferrous iron tra 99.2 1.3E-10 2.8E-15 116.6 11.9 112 224-337 3-167 (772)
500 PRK01889 GTPase RsgA; Reviewed 99.2 4E-10 8.6E-15 103.9 13.6 144 78-286 109-260 (356)
No 1
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=6.2e-38 Score=282.69 Aligned_cols=279 Identities=19% Similarity=0.170 Sum_probs=225.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc--c-------chhhhhc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG--G-------LRDGYYI 80 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~--~-------~~~~~~~ 80 (385)
..|+|+|+||||||||+|+ +.+...+.+..++|+|+++.+....+.+..|.++||+|.+... . .....+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNR-L~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNR-LTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHH-HhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 6899999999999999999 6677788999999999999999999999999999999987433 1 2234557
Q ss_pred cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
.+|++|||+|.....+.. +..+..++. ..++|+++|+||+|.. .......+++..+...++.+||.||.|+.+++
T Consensus 83 eADvilfvVD~~~Git~~--D~~ia~~Lr-~~~kpviLvvNK~D~~--~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 83 EADVILFVVDGREGITPA--DEEIAKILR-RSKKPVILVVNKIDNL--KAEELAYEFYSLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred hCCEEEEEEeCCCCCCHH--HHHHHHHHH-hcCCCEEEEEEcccCc--hhhhhHHHHHhcCCCCceEeehhhccCHHHHH
Confidence 899999999998765443 334444443 3679999999999975 33445567888888999999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHH
Q psy125 161 LWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTF 240 (385)
Q Consensus 161 ~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~ 240 (385)
+.+...+. .+.-.. .. .....+|++++|.||||||||
T Consensus 158 d~v~~~l~-~~e~~~-----~~-------------------------------------~~~~~ikiaiiGrPNvGKSsL 194 (444)
T COG1160 158 DAVLELLP-PDEEEE-----EE-------------------------------------EETDPIKIAIIGRPNVGKSSL 194 (444)
T ss_pred HHHHhhcC-Cccccc-----cc-------------------------------------ccCCceEEEEEeCCCCCchHH
Confidence 99998863 211100 00 002358999999999999999
Q ss_pred HHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc-----------ccccCcEEEEEEeCCCh
Q psy125 241 VKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG-----------YYIQGQCAIIMFDVTSR 309 (385)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----------~~~~~~~~ilv~d~~~~ 309 (385)
+|.++ ++-+...++..|+|++.+...+...+.++.++||||..+...+... .+..++++++|.|.+++
T Consensus 195 iN~il-geeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~ 273 (444)
T COG1160 195 INAIL-GEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG 273 (444)
T ss_pred HHHhc-cCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCC
Confidence 99966 5667788999999999999888877778899999999876666553 35699999999999999
Q ss_pred hhhhh-------------------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125 310 ITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLARKLI 338 (385)
Q Consensus 310 ~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~ 338 (385)
.+-++ .+.+||++|.++.++|.++.+..-
T Consensus 274 ~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 274 ISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred chHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 99888 688999999999999998876443
No 2
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1.7e-37 Score=296.60 Aligned_cols=277 Identities=21% Similarity=0.233 Sum_probs=201.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc--------cccchhhhhcc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK--------FGGLRDGYYIQ 81 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~--------~~~~~~~~~~~ 81 (385)
++|+|+|++|||||||+|+|+++. ...+.+++|+|++........++..+.+|||||.+. +......++.+
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~-~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRR-EAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcC-cccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 699999999999999999977654 345667889999888877776777899999999763 12233456789
Q ss_pred CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125 82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (385)
+|++|+|+|+++..++.. ..+...+.. .+.|+++|+||+|+..... +...++......++++||++|.|+++++.
T Consensus 118 aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~~~g~~~~~~iSA~~g~gi~eL~~ 192 (472)
T PRK03003 118 ADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEA--DAAALWSLGLGEPHPVSALHGRGVGDLLD 192 (472)
T ss_pred CCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHHhcCCCCeEEEEcCCCCCcHHHHH
Confidence 999999999998765432 233333332 5799999999999864321 22233333444567999999999999999
Q ss_pred HHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHHH
Q psy125 162 WLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFV 241 (385)
Q Consensus 162 ~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~~ 241 (385)
.|+..+...... . .......+++++|.+|||||||+
T Consensus 193 ~i~~~l~~~~~~--------------------------------~------------~~~~~~~kI~iiG~~nvGKSSLi 228 (472)
T PRK03003 193 AVLAALPEVPRV--------------------------------G------------SASGGPRRVALVGKPNVGKSSLL 228 (472)
T ss_pred HHHhhccccccc--------------------------------c------------cccccceEEEEECCCCCCHHHHH
Confidence 998876321000 0 00012379999999999999999
Q ss_pred HHHhcCccccccccceeeEEEEE--EEEeCCeeEEEEEeeCCCcccc----------Cccc-ccccccCcEEEEEEeCCC
Q psy125 242 KRHLTGEFEKKYVATLGVEVHPL--VFHTNRGAIRFNVWDTAGQEKF----------GGLR-DGYYIQGQCAIIMFDVTS 308 (385)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~----------~~~~-~~~~~~~~~~ilv~d~~~ 308 (385)
++++...+. ...+.+|++.... .+..++ ..+.+|||||+.+. ..+. ..+++++|++|+|||+++
T Consensus 229 n~l~~~~~~-~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~ 305 (472)
T PRK03003 229 NKLAGEERS-VVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASE 305 (472)
T ss_pred HHHhCCCcc-cccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence 998876542 3344555655433 344444 34689999997432 2222 135789999999999999
Q ss_pred hhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHHHhc
Q psy125 309 RITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 309 ~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~ 339 (385)
+.++++ +++|||++|.||+++|..+++.+..
T Consensus 306 ~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 306 PISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 988876 6889999999999999999987754
No 3
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=1.8e-35 Score=281.78 Aligned_cols=278 Identities=19% Similarity=0.179 Sum_probs=204.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc--------cccchhhhhccC
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK--------FGGLRDGYYIQG 82 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~--------~~~~~~~~~~~~ 82 (385)
+|+|+|++|||||||+|+|++.. ...+.+.+|+|+++......+++..+.+|||||... +......++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 58999999999999999976654 556677889999988887777788899999999732 223345567889
Q ss_pred cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 83 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 83 d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
|++++|+|+.+...... ..+...+.+ .++|+++|+||+|+...... ..+++......++.+||.++.|+.+++..
T Consensus 80 d~vl~vvD~~~~~~~~d-~~i~~~l~~--~~~piilVvNK~D~~~~~~~--~~~~~~lg~~~~~~vSa~~g~gv~~ll~~ 154 (429)
T TIGR03594 80 DVILFVVDGREGLTPED-EEIAKWLRK--SGKPVILVANKIDGKKEDAV--AAEFYSLGFGEPIPISAEHGRGIGDLLDA 154 (429)
T ss_pred CEEEEEEeCCCCCCHHH-HHHHHHHHH--hCCCEEEEEECccCCccccc--HHHHHhcCCCCeEEEeCCcCCChHHHHHH
Confidence 99999999987544332 122233322 47899999999998654322 23344455558999999999999999999
Q ss_pred HHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHHHH
Q psy125 163 LARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVK 242 (385)
Q Consensus 163 i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~~~ 242 (385)
+...+...... .......++++++|.+|+|||+|++
T Consensus 155 i~~~l~~~~~~--------------------------------------------~~~~~~~~~v~ivG~~~~GKSsLin 190 (429)
T TIGR03594 155 ILELLPEEEEE--------------------------------------------EEEEDGPIKIAIIGRPNVGKSTLVN 190 (429)
T ss_pred HHHhcCccccc--------------------------------------------ccccCCceEEEEECCCCCCHHHHHH
Confidence 88775321000 0001134799999999999999999
Q ss_pred HHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc-----------ccccccCcEEEEEEeCCChhh
Q psy125 243 RHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR-----------DGYYIQGQCAIIMFDVTSRIT 311 (385)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----------~~~~~~~~~~ilv~d~~~~~s 311 (385)
+++.... ....+..|++.......+...+..+.+|||||+.++..+. ..+++.+|++|+|||++++.+
T Consensus 191 ~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~ 269 (429)
T TIGR03594 191 ALLGEER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT 269 (429)
T ss_pred HHHCCCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCcc
Confidence 9886543 2234455666665544443334468999999987766543 126789999999999999888
Q ss_pred hhh------------------------------------------------hheeccccCCCchHHHHHHHHHHhc
Q psy125 312 YKN------------------------------------------------YYDISAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 312 ~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~ 339 (385)
+++ +++|||++|.||+++|.++.+....
T Consensus 270 ~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 270 EQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred HHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 876 7899999999999999999886543
No 4
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1.4e-33 Score=268.97 Aligned_cols=277 Identities=19% Similarity=0.186 Sum_probs=199.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc--------ccchhhhhcc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF--------GGLRDGYYIQ 81 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~--------~~~~~~~~~~ 81 (385)
++|+|+|.+|||||||+|+|++.. ...+...+|+|++.........+..+.+|||||+... ......++.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~-~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKR-DAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-ceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 589999999999999999976654 3445667888888777666666789999999998761 1223446789
Q ss_pred CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125 82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (385)
+|++|+|+|+.+...... .++..+.+. .+.|+++|+||+|+.... ....+++......++++||+++.|+.+++.
T Consensus 81 ad~il~vvd~~~~~~~~~--~~~~~~l~~-~~~piilv~NK~D~~~~~--~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~ 155 (435)
T PRK00093 81 ADVILFVVDGRAGLTPAD--EEIAKILRK-SNKPVILVVNKVDGPDEE--ADAYEFYSLGLGEPYPISAEHGRGIGDLLD 155 (435)
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH-cCCcEEEEEECccCccch--hhHHHHHhcCCCCCEEEEeeCCCCHHHHHH
Confidence 999999999987543321 222222222 378999999999975422 222334443334689999999999999998
Q ss_pred HHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHHH
Q psy125 162 WLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFV 241 (385)
Q Consensus 162 ~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~~ 241 (385)
.+....... .+. ......++++++|.+|+||||++
T Consensus 156 ~I~~~~~~~-----------~~~----------------------------------~~~~~~~~v~ivG~~n~GKStli 190 (435)
T PRK00093 156 AILEELPEE-----------EEE----------------------------------DEEDEPIKIAIIGRPNVGKSSLI 190 (435)
T ss_pred HHHhhCCcc-----------ccc----------------------------------cccccceEEEEECCCCCCHHHHH
Confidence 887732110 000 00113489999999999999999
Q ss_pred HHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc-----------ccccccCcEEEEEEeCCChh
Q psy125 242 KRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR-----------DGYYIQGQCAIIMFDVTSRI 310 (385)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----------~~~~~~~~~~ilv~d~~~~~ 310 (385)
++++... .....+..|++.......+...+..+.+|||||..+...+. -.+++.+|++|+|+|++++.
T Consensus 191 n~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~ 269 (435)
T PRK00093 191 NALLGEE-RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGI 269 (435)
T ss_pred HHHhCCC-ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCC
Confidence 9988543 22334556677776655554445668899999976544332 12578999999999999988
Q ss_pred hhhh-----------------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125 311 TYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARKLI 338 (385)
Q Consensus 311 s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~ 338 (385)
++++ ++++||++|.||+++|..+.+...
T Consensus 270 ~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 270 TEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8776 789999999999999999887543
No 5
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=3.4e-33 Score=278.94 Aligned_cols=280 Identities=20% Similarity=0.198 Sum_probs=199.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc--------ccchhhhhc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF--------GGLRDGYYI 80 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~--------~~~~~~~~~ 80 (385)
..+|+|+|++|||||||+|+|++. ....+.+++|+|+++......+++..+.+|||||.... ......++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 468999999999999999997654 34566778999999988777777788999999997632 122344678
Q ss_pred cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
.+|++|+|+|+++...... ..|...+.. .+.|+++|+||+|+.... .....++.......+++||+++.|+.+++
T Consensus 354 ~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~~~~--~~~~~~~~lg~~~~~~iSA~~g~GI~eLl 428 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQASE--YDAAEFWKLGLGEPYPISAMHGRGVGDLL 428 (712)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccccch--hhHHHHHHcCCCCeEEEECCCCCCchHHH
Confidence 9999999999986432221 134444433 589999999999985432 12233444444467899999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHH
Q psy125 161 LWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTF 240 (385)
Q Consensus 161 ~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~ 240 (385)
..|+..+..... . ...+. .....+++++|.+|||||||
T Consensus 429 ~~i~~~l~~~~~------------~-------------------~~a~~-----------~~~~~kI~ivG~~nvGKSSL 466 (712)
T PRK09518 429 DEALDSLKVAEK------------T-------------------SGFLT-----------PSGLRRVALVGRPNVGKSSL 466 (712)
T ss_pred HHHHHhcccccc------------c-------------------ccccC-----------CCCCcEEEEECCCCCCHHHH
Confidence 999887532100 0 00000 01236899999999999999
Q ss_pred HHHHhcCccccccccceeeEEEEEE--EEeCCeeEEEEEeeCCCccccCc----------cc-ccccccCcEEEEEEeCC
Q psy125 241 VKRHLTGEFEKKYVATLGVEVHPLV--FHTNRGAIRFNVWDTAGQEKFGG----------LR-DGYYIQGQCAIIMFDVT 307 (385)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~----------~~-~~~~~~~~~~ilv~d~~ 307 (385)
+++++...+. .....+|++..... +..++. .+.+|||||+.+... +. ..+++.+|++|+|+|++
T Consensus 467 in~l~~~~~~-~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat 543 (712)
T PRK09518 467 LNQLTHEERA-VVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDAS 543 (712)
T ss_pred HHHHhCcccc-ccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECC
Confidence 9998866531 22334455544433 334443 467999999753211 11 12468999999999999
Q ss_pred Chhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHHHhc
Q psy125 308 SRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 308 ~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~ 339 (385)
++.++++ .+.+||++|.||+++|..+++....
T Consensus 544 ~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 544 QPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9988876 2679999999999999999997765
No 6
>KOG0084|consensus
Probab=100.00 E-value=1.8e-32 Score=218.55 Aligned_cols=126 Identities=33% Similarity=0.595 Sum_probs=120.1
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|++|||||+|+.||..+.|.+.|.+|+|+++..+.+.++++.++++|||||||+||+.+...|||+|||+|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|||+|++.||++ |+|||||++.||+++|..|
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~l 167 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTL 167 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHH
Confidence 999999999999 8999999999999999999
Q ss_pred HHHHhcCCCcccccC
Q psy125 334 ARKLIGDPNLEFVAM 348 (385)
Q Consensus 334 ~~~i~~~~~~~~~~~ 348 (385)
+..+...........
T Consensus 168 a~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 168 AKELKQRKGLHVKWS 182 (205)
T ss_pred HHHHHHhcccCCCCC
Confidence 999988776655554
No 7
>KOG0080|consensus
Probab=99.97 E-value=1.4e-31 Score=204.94 Aligned_cols=123 Identities=34% Similarity=0.588 Sum_probs=119.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|.+|||||+|+.+|..+.|......|+|+++..+.+.+++..+++.|||||||++|+.+.+.|||+|.|+|+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV 90 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV 90 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence 58999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
||+|.|++|.+ |+|||||+.+||+..|..++
T Consensus 91 YDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feelv 170 (209)
T KOG0080|consen 91 YDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELV 170 (209)
T ss_pred EEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHH
Confidence 99999999988 99999999999999999999
Q ss_pred HHHhcCCCcccc
Q psy125 335 RKLIGDPNLEFV 346 (385)
Q Consensus 335 ~~i~~~~~~~~~ 346 (385)
.+|++.+.++..
T Consensus 171 eKIi~tp~l~~~ 182 (209)
T KOG0080|consen 171 EKIIETPSLWEE 182 (209)
T ss_pred HHHhcCcchhhc
Confidence 999999987754
No 8
>KOG0092|consensus
Probab=99.97 E-value=1.6e-31 Score=212.24 Aligned_cols=122 Identities=32% Similarity=0.603 Sum_probs=116.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+|++++|+.+||||+++.||..++|.+...+|+|..|.++.+.++...+++.||||+||++|.++.++|||+|+++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||+|+.+||+. |+|||||+|.||+++|..|+
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia 163 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA 163 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence 999999999998 99999999999999999999
Q ss_pred HHHhcCCCcc
Q psy125 335 RKLIGDPNLE 344 (385)
Q Consensus 335 ~~i~~~~~~~ 344 (385)
+.++......
T Consensus 164 ~~lp~~~~~~ 173 (200)
T KOG0092|consen 164 EKLPCSDPQE 173 (200)
T ss_pred HhccCccccc
Confidence 9998865443
No 9
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=3.2e-29 Score=216.41 Aligned_cols=205 Identities=76% Similarity=1.265 Sum_probs=180.8
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc
Q psy125 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI 80 (385)
Q Consensus 1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~ 80 (385)
|+....+..+||+++|++|||||||+++++.+.+...+.++.+.++.......+.+.+.+.+|||+|++.+...+..++.
T Consensus 1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~ 80 (215)
T PTZ00132 1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI 80 (215)
T ss_pred CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence 56666688899999999999999999988998888889999999888887778889999999999999888888888999
Q ss_pred cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
+++++++|||+++..++..+..|+..+.....+.|+++++||+|+.......+...+....+..++++|++++.|++++|
T Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999998899988877667899999999999865444344445666777899999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCC-----CCCChhhhhhhHHhHHHHHHhcCCC
Q psy125 161 LWLARKLIGDPNLEFVAMPALLPPE-----VTMDPQWQSRIEQDLKEAQETALPD 210 (385)
Q Consensus 161 ~~i~~~l~~~~~~~~~~~~~~~ep~-----~~~d~~~~~~~~~~l~~~~~~~~~~ 210 (385)
.+|++++..+|.+++ +|||+ .++|+..+..+.+.+++...-.+++
T Consensus 161 ~~ia~~l~~~p~~~~-----ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~ 210 (215)
T PTZ00132 161 LWLARRLTNDPNLVF-----VGAPALAPEEIQIDPELVAQAEKELQAAANVPLPD 210 (215)
T ss_pred HHHHHHHhhccccee-----cCCcccCCCccccCHHHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999 99999 9999999999999999876554444
No 10
>KOG0084|consensus
Probab=99.97 E-value=5e-30 Score=204.62 Aligned_cols=166 Identities=32% Similarity=0.620 Sum_probs=152.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
...+||+|+|++|||||+|+.+|..+.|...+..|+|+++.......+++.+++++|||+|+++++.+...|++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCe-EEEEcCCCCCChHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~ 162 (385)
+|||+++.++|.++..|+.++.+.. .+.|.++|+||+|+.+.+. ..+...++...+.+ ++++||++..++++.|..
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT 166 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence 9999999999999999999998854 5679999999999977654 44566788888888 999999999999999999
Q ss_pred HHHHHhcCCC
Q psy125 163 LARKLIGDPN 172 (385)
Q Consensus 163 i~~~l~~~~~ 172 (385)
|+..+.....
T Consensus 167 la~~lk~~~~ 176 (205)
T KOG0084|consen 167 LAKELKQRKG 176 (205)
T ss_pred HHHHHHHhcc
Confidence 9998866533
No 11
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.8e-28 Score=211.44 Aligned_cols=205 Identities=78% Similarity=1.274 Sum_probs=177.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
+++.+||+++|.+|||||||+++++.+.+...+.++.|.++.........+.+.+.+|||+|++.+..++..++++++++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 36789999999999999999999999999899999999888877777777889999999999999988888999999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
|+|||++++.+++.+..|+..+.....+.|+++|+||+|+.......+...+....+..++++||+++.|++++|.+|++
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~ 169 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999888777789999999999986543333333566677789999999999999999999999
Q ss_pred HHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCC
Q psy125 166 KLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPD 210 (385)
Q Consensus 166 ~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~ 210 (385)
.+.......+...+.++.+....+......+...+++.....+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (219)
T PLN03071 170 KLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPD 214 (219)
T ss_pred HHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 998877776767778888888889988888888888877665443
No 12
>KOG0094|consensus
Probab=99.97 E-value=4.2e-30 Score=204.00 Aligned_cols=121 Identities=32% Similarity=0.604 Sum_probs=116.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+|++++|+.+||||+++.||+.+.|...|.+|+|.++..+.+.+.+..+.|++||||||++|+.+.+.|+|++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|||++|+.||++ |+|+|||.|.||.++|..|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 999999999999 9999999999999999999
Q ss_pred HHHHhcCCCc
Q psy125 334 ARKLIGDPNL 343 (385)
Q Consensus 334 ~~~i~~~~~~ 343 (385)
+..++.....
T Consensus 181 aa~l~~~~~~ 190 (221)
T KOG0094|consen 181 AAALPGMEVL 190 (221)
T ss_pred HHhccCcccc
Confidence 9998877553
No 13
>KOG0080|consensus
Probab=99.96 E-value=7.7e-29 Score=189.88 Aligned_cols=168 Identities=32% Similarity=0.565 Sum_probs=153.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
-.+||+|||.+|||||+|+.+|..+.+.+....++|+++..+.+.+++..+++.+|||+|+++++.+...|++++.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
|||++.+.+|.+++.|..++.-+.. ++-.++|+||+|...++. ..+...+++....-++++||++..|++..|..+
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feel 169 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEEL 169 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHH
Confidence 9999999999999999999876544 444579999999875444 567778999999999999999999999999999
Q ss_pred HHHHhcCCCccc
Q psy125 164 ARKLIGDPNLEF 175 (385)
Q Consensus 164 ~~~l~~~~~~~~ 175 (385)
+..+++.|.+..
T Consensus 170 veKIi~tp~l~~ 181 (209)
T KOG0080|consen 170 VEKIIETPSLWE 181 (209)
T ss_pred HHHHhcCcchhh
Confidence 999999877754
No 14
>KOG0098|consensus
Probab=99.96 E-value=3.1e-30 Score=203.02 Aligned_cols=125 Identities=28% Similarity=0.517 Sum_probs=119.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+|++++|+.|||||+|+.||..+.|...++.|+|+++..+.+.++++.++|+||||+||+.|+++...||++|.|+||
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||+++++||+. |+|||||++.||+|+|...+
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence 999999999988 99999999999999999999
Q ss_pred HHHhcCCCccccc
Q psy125 335 RKLIGDPNLEFVA 347 (385)
Q Consensus 335 ~~i~~~~~~~~~~ 347 (385)
+.|+.+.+.....
T Consensus 165 ~~Iy~~~q~g~~~ 177 (216)
T KOG0098|consen 165 KEIYRKIQDGVFD 177 (216)
T ss_pred HHHHHHHHhcccc
Confidence 9999877655443
No 15
>KOG0092|consensus
Probab=99.96 E-value=9.2e-29 Score=196.63 Aligned_cols=166 Identities=32% Similarity=0.599 Sum_probs=150.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
|....+||+|+|..|||||||+-|+..+.|.+...+|+|.-+..+....+...+++.||||+|+++|..+...|++++++
T Consensus 1 ~~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~A 80 (200)
T KOG0092|consen 1 MATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANA 80 (200)
T ss_pred CCcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (385)
+|+|||+++.++|..+..|+.++.+.. ++.-+.+|+||+|+...+. ..+...++...+..++++||+++.|++++|.
T Consensus 81 AivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~ 160 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ 160 (200)
T ss_pred EEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence 999999999999999999999998854 3455668999999987333 5667788999999999999999999999999
Q ss_pred HHHHHHhcC
Q psy125 162 WLARKLIGD 170 (385)
Q Consensus 162 ~i~~~l~~~ 170 (385)
.|++.+...
T Consensus 161 ~Ia~~lp~~ 169 (200)
T KOG0092|consen 161 AIAEKLPCS 169 (200)
T ss_pred HHHHhccCc
Confidence 999998553
No 16
>KOG0098|consensus
Probab=99.96 E-value=1.3e-28 Score=193.82 Aligned_cols=163 Identities=31% Similarity=0.562 Sum_probs=152.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+|++++|+.|||||+|+.+|..+.|.+.+..|+|+++-...+.++.+.+++++|||+|++.+++....|++++.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|||++.+++|..+..|+..+.++ .+|..+++++||+||..++. ..+...|++..+..++++||+++.|+++.|...
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT 163 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence 999999999999999999999986 48899999999999977654 556778999999999999999999999999999
Q ss_pred HHHHhc
Q psy125 164 ARKLIG 169 (385)
Q Consensus 164 ~~~l~~ 169 (385)
+..+..
T Consensus 164 a~~Iy~ 169 (216)
T KOG0098|consen 164 AKEIYR 169 (216)
T ss_pred HHHHHH
Confidence 988765
No 17
>KOG0078|consensus
Probab=99.96 E-value=2.6e-29 Score=203.84 Aligned_cols=121 Identities=31% Similarity=0.660 Sum_probs=116.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+|++++|+++||||+++.+|..+.|...+..|+|.++..+.+.+++..+.++||||+||++|+.+...||++|+|++|
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~L 90 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILL 90 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||+|+..||++ |+|||||+|.||+|+|..|+
T Consensus 91 vyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La 170 (207)
T KOG0078|consen 91 VYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLA 170 (207)
T ss_pred EEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHH
Confidence 999999999999 99999999999999999999
Q ss_pred HHHhcCCCc
Q psy125 335 RKLIGDPNL 343 (385)
Q Consensus 335 ~~i~~~~~~ 343 (385)
+.|..+...
T Consensus 171 ~~i~~k~~~ 179 (207)
T KOG0078|consen 171 RDILQKLED 179 (207)
T ss_pred HHHHhhcch
Confidence 999975443
No 18
>KOG0078|consensus
Probab=99.96 E-value=5.4e-28 Score=196.18 Aligned_cols=169 Identities=29% Similarity=0.621 Sum_probs=154.7
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhcc
Q psy125 2 AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ 81 (385)
Q Consensus 2 ~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~ 81 (385)
+.+.....+||+++|++|||||+++-+|..+.+...+..++|+.+..+.+..++..+.+.+|||.|+++++.+...|+++
T Consensus 5 ~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg 84 (207)
T KOG0078|consen 5 AKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG 84 (207)
T ss_pred ccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh
Confidence 34344567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125 82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (385)
++++++|||+++..+|+++..|+..+..+.+ ..+.+||+||+|+...+. ......++...+..++++||++|.|+++
T Consensus 85 A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 85 AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 9999999999999999999999999988554 889999999999987544 5566778999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q psy125 159 PFLWLARKLIGD 170 (385)
Q Consensus 159 l~~~i~~~l~~~ 170 (385)
.|..|++.+..+
T Consensus 165 aF~~La~~i~~k 176 (207)
T KOG0078|consen 165 AFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHhh
Confidence 999999998753
No 19
>KOG0394|consensus
Probab=99.96 E-value=2.9e-29 Score=197.22 Aligned_cols=122 Identities=28% Similarity=0.635 Sum_probs=117.3
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
+..+||+++|++|||||+|+++|..+.|...|..|+|.++.++.+.++++.+.++||||+||++|.++.-.+||++|+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhhhh-------------------------------------------------------hheeccccCCCc
Q psy125 302 IMFDVTSRITYKN-------------------------------------------------------YYDISAKSNYNF 326 (385)
Q Consensus 302 lv~d~~~~~s~~~-------------------------------------------------------~~e~Sak~~~~v 326 (385)
+|||++++.||++ |+|||||.+.||
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 9999999999998 999999999999
Q ss_pred hHHHHHHHHHHhcCCCc
Q psy125 327 EKPFLWLARKLIGDPNL 343 (385)
Q Consensus 327 ~~~f~~l~~~i~~~~~~ 343 (385)
+++|..+++..+.+-..
T Consensus 167 ~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 167 DEAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHHhccch
Confidence 99999999999887654
No 20
>KOG0079|consensus
Probab=99.96 E-value=1e-29 Score=191.95 Aligned_cols=117 Identities=31% Similarity=0.635 Sum_probs=114.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
++.+|+|++|||||+|+.+|-.+.|...|..|+|.++..+.+.+++..+++.|||||||++|+.+.+.||++.||+|+||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125 305 DVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARKL 337 (385)
Q Consensus 305 d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i 337 (385)
|+|+.+||.+ +||||||.+.||+..|..|++++
T Consensus 89 DVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHH
Confidence 9999999999 99999999999999999999999
Q ss_pred hcCC
Q psy125 338 IGDP 341 (385)
Q Consensus 338 ~~~~ 341 (385)
++.+
T Consensus 169 l~~k 172 (198)
T KOG0079|consen 169 LQAK 172 (198)
T ss_pred HHHH
Confidence 8865
No 21
>KOG0094|consensus
Probab=99.96 E-value=9.6e-28 Score=190.62 Aligned_cols=164 Identities=30% Similarity=0.561 Sum_probs=148.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+|++++|..+||||||+++|+.+.+...|.+|+|+++....+.+....+++.+|||.|+++++.+...|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
+|||+++..+|++...|+..++.... +.-+++|+||.||.+.+. ..+....++..+..++++||+.|.|+.++|..
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence 99999999999999999999887433 355679999999987655 33444567778889999999999999999999
Q ss_pred HHHHHhcC
Q psy125 163 LARKLIGD 170 (385)
Q Consensus 163 i~~~l~~~ 170 (385)
|+.++.+.
T Consensus 180 Iaa~l~~~ 187 (221)
T KOG0094|consen 180 IAAALPGM 187 (221)
T ss_pred HHHhccCc
Confidence 99987665
No 22
>KOG0086|consensus
Probab=99.95 E-value=8.2e-29 Score=188.05 Aligned_cols=119 Identities=29% Similarity=0.608 Sum_probs=114.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+|++++|+.|.|||+|+.+|+.++|....+.|+|+++.++.+.+.++.++++||||+||++|+++...||++|-|++||
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
||+|+++||+. |.||||++|.||+|+|...++
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 99999999998 899999999999999999999
Q ss_pred HHhcCCC
Q psy125 336 KLIGDPN 342 (385)
Q Consensus 336 ~i~~~~~ 342 (385)
.|+.+-.
T Consensus 169 tIl~kIE 175 (214)
T KOG0086|consen 169 TILNKIE 175 (214)
T ss_pred HHHHHHh
Confidence 9987643
No 23
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.95 E-value=1.1e-26 Score=192.18 Aligned_cols=164 Identities=93% Similarity=1.510 Sum_probs=144.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++.+.+...+.++.+.+..........+.+.+.+|||+|++.+...+..++.++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888899998887777777888899999999999988888888999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 90 DVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
|++++.+++.+..|+..+.....+.|+++++||+|+..+....+...+.......++++||+++.|+++++.+|++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 99999999999899999887666899999999999875444444445666677799999999999999999999999887
Q ss_pred CCCc
Q psy125 170 DPNL 173 (385)
Q Consensus 170 ~~~~ 173 (385)
.|.+
T Consensus 161 ~~~~ 164 (166)
T cd00877 161 NPNL 164 (166)
T ss_pred cccc
Confidence 6654
No 24
>KOG0394|consensus
Probab=99.95 E-value=2.5e-27 Score=186.31 Aligned_cols=170 Identities=28% Similarity=0.632 Sum_probs=150.0
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc
Q psy125 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI 80 (385)
Q Consensus 1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~ 80 (385)
|++......+||+++|++|+|||||+|++....|...+..++|..+..+.+.++...+.+.+|||+|++++.++.-.+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 55545556699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcch---hh-hHHHHHHHHh-cCCeEEEEcC
Q psy125 81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDR---KV-KAKSIVFHRK-KNLQYYDISA 150 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~---~~-~~~~~~~~~~-~~~~~~~~Sa 150 (385)
++|+.++|||++++.+|+++..|..++.... +..|+++++||+|+... .. ......|+.. +.+++|++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 9999999999999999999999999988743 46799999999998652 22 4455666655 4569999999
Q ss_pred CCCCChHHHHHHHHHHHhcC
Q psy125 151 KSNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~~ 170 (385)
+...++...|..+++..+..
T Consensus 161 K~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALAN 180 (210)
T ss_pred cccccHHHHHHHHHHHHHhc
Confidence 99999999999999987665
No 25
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.95 E-value=1.8e-26 Score=195.21 Aligned_cols=189 Identities=92% Similarity=1.474 Sum_probs=163.2
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCCh
Q psy125 15 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 94 (385)
Q Consensus 15 vG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~ 94 (385)
+|.+|||||||+++++.+.+...+.++.|.+.....+..+.+.+.+.+|||+|++.+..++..++++++++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888888899999988888888888899999999999999999999999999999999999999
Q ss_pred hhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhcCCCcc
Q psy125 95 ITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 174 (385)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~ 174 (385)
.++..+..|+..+.+...+.|+++|+||+|+..+....+...++...+..++++||+++.|+.++|.+|++.+.....+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~ 160 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 160 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcccce
Confidence 99999999999988866789999999999986544333444566777889999999999999999999999998887777
Q ss_pred cccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 175 FVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 175 ~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
+...+++..+....++.........+.-.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (200)
T smart00176 161 FVAMPALAPPEVVMDPALAAQYEHDLEVA 189 (200)
T ss_pred eccCcccCCcccccChhhhhhhhHHHHHH
Confidence 77778888887777777766666544433
No 26
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=9.8e-27 Score=195.39 Aligned_cols=163 Identities=21% Similarity=0.498 Sum_probs=144.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+++|..|||||||+++|..+.+...+.++.+.......+..+...+.+.+|||+|++.+..++..+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999988888888888887776777778888999999999999999989999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh--hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
|||++++.+|+++..|+..+.....+.|+++|+||.|+...+ ...+...++...+..++++||+++.|++++|.+|++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 999999999999999999998766789999999999996532 244566777778889999999999999999999999
Q ss_pred HHhcC
Q psy125 166 KLIGD 170 (385)
Q Consensus 166 ~l~~~ 170 (385)
.+...
T Consensus 165 ~i~~~ 169 (189)
T cd04121 165 IVLMR 169 (189)
T ss_pred HHHHh
Confidence 87653
No 27
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=1.4e-26 Score=192.33 Aligned_cols=159 Identities=30% Similarity=0.529 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|.+|||||||+.+++.+.+...+.++.+.++. .....++..+.+.+|||+|++.+..+...++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 69999999999999999999999998889999987764 34566778899999999999999999999999999999999
Q ss_pred eCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcchh------------hhHHHHHHHHhcCC-eEEEEcCCCCCC
Q psy125 90 DVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK------------VKAKSIVFHRKKNL-QYYDISAKSNYN 155 (385)
Q Consensus 90 d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~-~~~~~Sa~~~~g 155 (385)
|++++.+|+++ ..|+..+.....+.|+++|+||+|+.+.. ...+...++...+. .++++||+++.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999998 57999887766789999999999986532 24455667777776 699999999999
Q ss_pred hHHHHHHHHHHHhc
Q psy125 156 FEKPFLWLARKLIG 169 (385)
Q Consensus 156 i~~l~~~i~~~l~~ 169 (385)
++++|..+++.+.+
T Consensus 161 V~~~F~~~~~~~~~ 174 (176)
T cd04133 161 VKAVFDAAIKVVLQ 174 (176)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998643
No 28
>KOG0079|consensus
Probab=99.95 E-value=8.6e-28 Score=181.50 Aligned_cols=168 Identities=31% Similarity=0.627 Sum_probs=153.6
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc
Q psy125 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI 80 (385)
Q Consensus 1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~ 80 (385)
|+..|+ .-++.+|+|++|+|||+|+-+|..+.|...|..++|+++......+.+..+.+.||||.|+++++.+...|++
T Consensus 1 mar~~d-hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyr 79 (198)
T KOG0079|consen 1 MARDYD-HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYR 79 (198)
T ss_pred CcccHH-HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHcc
Confidence 444443 4468899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125 81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (385)
+.+++++|||+++.++|.++..|+.++...+...|-++|+||.|+..++. ..+...|+...++.+|++|++.+.+++.
T Consensus 80 gthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~ 159 (198)
T KOG0079|consen 80 GTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEA 159 (198)
T ss_pred CCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchH
Confidence 99999999999999999999999999999888999999999999987765 4567788999999999999999999999
Q ss_pred HHHHHHHHHhc
Q psy125 159 PFLWLARKLIG 169 (385)
Q Consensus 159 l~~~i~~~l~~ 169 (385)
.|.-|.+....
T Consensus 160 mF~cit~qvl~ 170 (198)
T KOG0079|consen 160 MFHCITKQVLQ 170 (198)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 29
>KOG0087|consensus
Probab=99.95 E-value=6.5e-28 Score=194.50 Aligned_cols=120 Identities=30% Similarity=0.543 Sum_probs=115.7
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+|++++|+++||||-|+.||..++|.-...+|+|+++.+..+.++++.++.+|||||||+||+.+.+.||++|.|+++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||+|.+.||++ |+||||..+.||+++|..++
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence 999999999999 99999999999999999999
Q ss_pred HHHhcCCC
Q psy125 335 RKLIGDPN 342 (385)
Q Consensus 335 ~~i~~~~~ 342 (385)
..|+..-+
T Consensus 173 ~~I~~~vs 180 (222)
T KOG0087|consen 173 TEIYKIVS 180 (222)
T ss_pred HHHHHHHH
Confidence 99987543
No 30
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.95 E-value=2.9e-26 Score=194.36 Aligned_cols=161 Identities=26% Similarity=0.598 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+.|+++|..|||||||+++++.+.+...+.++.|..+.......++..+.+.+|||+|++.++.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888899998887777777888899999999999999999999999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHh-cCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRK-KNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
|++++.+|+++..|+..+... ..+.|+++|+||+|+...+. ..+...++.. .+..++++||++|.|++++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 999999999999999877654 35789999999999864332 2334445544 3678999999999999999999999
Q ss_pred HHhcC
Q psy125 166 KLIGD 170 (385)
Q Consensus 166 ~l~~~ 170 (385)
.+...
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 87654
No 31
>KOG0091|consensus
Probab=99.95 E-value=1.6e-28 Score=188.72 Aligned_cols=119 Identities=27% Similarity=0.573 Sum_probs=112.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEe-CCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
.++++++|++.||||+|+..|..+.|.+..+||+|+++....+.+ ++..+++++|||+||++|+++...||++.-|+++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 489999999999999999999999999999999999999888876 4678899999999999999999999999999999
Q ss_pred EEeCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHH
Q psy125 303 MFDVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 303 v~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|||+|++.||+. |+|||||+|.||+|+|..
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m 167 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM 167 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence 999999999998 999999999999999999
Q ss_pred HHHHHhcCCC
Q psy125 333 LARKLIGDPN 342 (385)
Q Consensus 333 l~~~i~~~~~ 342 (385)
|+++|...-+
T Consensus 168 laqeIf~~i~ 177 (213)
T KOG0091|consen 168 LAQEIFQAIQ 177 (213)
T ss_pred HHHHHHHHHh
Confidence 9999987543
No 32
>KOG0088|consensus
Probab=99.95 E-value=3.6e-28 Score=185.69 Aligned_cols=132 Identities=31% Similarity=0.503 Sum_probs=120.1
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..||++++|..-||||+|.-||+.+.|.....+|+...|..+.+.+.+....+.||||+||++|..+-+.||++.+|+||
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||+||+.||+. |+|||||.+.||.|+|..|.
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence 999999999998 99999999999999999999
Q ss_pred HHHhcCCCccc-ccCCCCCCC
Q psy125 335 RKLIGDPNLEF-VAMPALLPP 354 (385)
Q Consensus 335 ~~i~~~~~~~~-~~~~~~~~~ 354 (385)
+.+++..+..+ .+.|...+|
T Consensus 172 ~~MiE~~s~~qr~~~~~s~qp 192 (218)
T KOG0088|consen 172 AKMIEHSSQRQRTRSPLSTQP 192 (218)
T ss_pred HHHHHHhhhcccccCCcCCCC
Confidence 99998765433 333333333
No 33
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.95 E-value=6.3e-26 Score=189.59 Aligned_cols=160 Identities=23% Similarity=0.401 Sum_probs=139.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+++|.+|||||||+++++.+.+...+.|+.+..+. .....+...+.+.+|||+|++.+..++..+++++|++|+
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 4689999999999999999999999998888899886654 456678888999999999999998888999999999999
Q ss_pred EEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcch--------------hhhHHHHHHHHhcCC-eEEEEcCC
Q psy125 88 MFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR--------------KVKAKSIVFHRKKNL-QYYDISAK 151 (385)
Q Consensus 88 V~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~Sa~ 151 (385)
|||++++.+|+++ ..|+..+....++.|+++|+||+|+... ....+..+++...+. .++++||+
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk 162 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 162 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence 9999999999997 7899988877778999999999998541 124566778888885 89999999
Q ss_pred CCCC-hHHHHHHHHHHHh
Q psy125 152 SNYN-FEKPFLWLARKLI 168 (385)
Q Consensus 152 ~~~g-i~~l~~~i~~~l~ 168 (385)
++.| ++++|..++++..
T Consensus 163 ~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 163 QSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 9998 9999999988654
No 34
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=7.6e-26 Score=191.43 Aligned_cols=162 Identities=31% Similarity=0.558 Sum_probs=137.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
|..+||+++|..|||||||+++++.+.+...+.++.|..+.. ....+...+.+.+|||+|++.++.++..+++++|++|
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA-QTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEE-EEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 356899999999999999999999999988888998866543 3456778899999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcC-CeEEEEcC
Q psy125 87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKN-LQYYDISA 150 (385)
Q Consensus 87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~Sa 150 (385)
+|||++++.+|+++. .|+..+.....+.|+++|+||.|+.+... ..+...++...+ ..++++||
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 999999999999986 58877766667899999999999864321 224455666666 58999999
Q ss_pred CCCCChHHHHHHHHHHHhc
Q psy125 151 KSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~ 169 (385)
+++.|++++|..+++.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998754
No 35
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=1.4e-25 Score=191.66 Aligned_cols=163 Identities=35% Similarity=0.631 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
+||+++|++|||||||+++|+.+.+...+.++.|.++....+..+ +..+.+.+|||+|++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888999887776666666 6789999999999999988899999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHh-----cCCCCEEEEEeCCCCcc--hhhhHHHHHHHHhcC-CeEEEEcCCCCCChHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRV-----CENIPIVLCGNKVDIKD--RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~-----~~~~~~ilv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 160 (385)
||++++.+++.+..|+..+... ..+.|+++|+||+|+.. .....+...+....+ ..++++||+++.|+++++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 9999999999998888777542 25789999999999963 223445566777666 589999999999999999
Q ss_pred HHHHHHHhcCCC
Q psy125 161 LWLARKLIGDPN 172 (385)
Q Consensus 161 ~~i~~~l~~~~~ 172 (385)
.+|++.+.....
T Consensus 161 ~~l~~~l~~~~~ 172 (201)
T cd04107 161 RFLVKNILANDK 172 (201)
T ss_pred HHHHHHHHHhch
Confidence 999998876533
No 36
>KOG0087|consensus
Probab=99.94 E-value=3.4e-26 Score=184.62 Aligned_cols=163 Identities=31% Similarity=0.548 Sum_probs=150.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
...+||+++|++|||||-|+.+|..+.|.....+|+|+++......++++.++..||||.|+++|+.+...|++++.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|||++.+.+|+++.+|+.+++.+. .++++++|+||+||...+. .++...++...+..++++||....++++.|..+
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERV 171 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHH
Confidence 9999999999999999999999865 7899999999999977443 566778899999999999999999999999888
Q ss_pred HHHHhc
Q psy125 164 ARKLIG 169 (385)
Q Consensus 164 ~~~l~~ 169 (385)
...+..
T Consensus 172 l~~I~~ 177 (222)
T KOG0087|consen 172 LTEIYK 177 (222)
T ss_pred HHHHHH
Confidence 877654
No 37
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=9.7e-27 Score=197.23 Aligned_cols=117 Identities=28% Similarity=0.610 Sum_probs=110.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+.|+++|..|||||+++.+|..+.|...+.+|+|.++..+.+.+++..+.+.||||+|+++|+.++..||+++||+|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36999999999999999999999999999999999998888889988999999999999999999999999999999999
Q ss_pred eCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 305 DVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 305 d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
|++++.||++ |+|||||+|.||+++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999988 789999999999999999999
Q ss_pred HHhcCC
Q psy125 336 KLIGDP 341 (385)
Q Consensus 336 ~i~~~~ 341 (385)
.+....
T Consensus 161 ~~~~~~ 166 (202)
T cd04120 161 DILKKM 166 (202)
T ss_pred HHHHhC
Confidence 987754
No 38
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=4.8e-26 Score=196.38 Aligned_cols=163 Identities=76% Similarity=1.233 Sum_probs=146.9
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.|...+.+|+|.++....+..++..+.+.||||+|+++|..++..||++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 45689999999999999999999999999999999999998888878888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhh---------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 302 IMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 302 lv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
+|||++++.||++ |+|||||+|.||+++|.+|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~ 170 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 9999999999986 7999999999999999999999
Q ss_pred HhcCCCcccccCCCCCCCccccChhhhhHHHHHHHHhhccCCCCCCCC
Q psy125 337 LIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDED 384 (385)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (385)
+.......+...+.+.++....+....+..++...+++....++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (219)
T PLN03071 171 LAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDDDDD 218 (219)
T ss_pred HHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 998887777888888888877777777777777778877777776654
No 39
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=1.4e-25 Score=187.27 Aligned_cols=159 Identities=22% Similarity=0.398 Sum_probs=136.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+||+++|++|||||||+++++.+.+...+.++.+..+. .....+...+.+.+|||+|++.+..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 379999999999999999999999998888888886654 4566778889999999999999888888999999999999
Q ss_pred EeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcch--------------hhhHHHHHHHHhcCC-eEEEEcCCC
Q psy125 89 FDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR--------------KVKAKSIVFHRKKNL-QYYDISAKS 152 (385)
Q Consensus 89 ~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (385)
||++++.+|+.+ ..|+..+....++.|+++|+||+|+... ....+..+++...+. .++++||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999985 7899988877778999999999998531 123456678887786 899999999
Q ss_pred CCC-hHHHHHHHHHHHh
Q psy125 153 NYN-FEKPFLWLARKLI 168 (385)
Q Consensus 153 ~~g-i~~l~~~i~~~l~ 168 (385)
+.+ ++++|..++++.+
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998643
No 40
>KOG0086|consensus
Probab=99.94 E-value=1.7e-26 Score=175.47 Aligned_cols=167 Identities=29% Similarity=0.569 Sum_probs=150.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
..-+|++++|+.|.|||+|+.+|+.+.+....+.++|+++....+.+..+.+++.+|||.|+++++...+.|++++.+++
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|||++++.+|..+..|+...+.. .+++-+++++||.|+.+.+. ..+...++......+.++|+.+|+++++.|...
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c 166 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 166 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHH
Confidence 999999999999999999988763 35777889999999987655 345566788888899999999999999999999
Q ss_pred HHHHhcCCCc
Q psy125 164 ARKLIGDPNL 173 (385)
Q Consensus 164 ~~~l~~~~~~ 173 (385)
++.++.+-+.
T Consensus 167 ~~tIl~kIE~ 176 (214)
T KOG0086|consen 167 ARTILNKIES 176 (214)
T ss_pred HHHHHHHHhh
Confidence 9988765333
No 41
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.94 E-value=2.6e-25 Score=184.29 Aligned_cols=160 Identities=31% Similarity=0.571 Sum_probs=138.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+||+++|++|||||||+++++.+.+...+.++.+.+........+...+.+.+|||||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988888888888887777777788889999999999998888888999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
||++++.+++.+..|+..+... ..+.|+++|+||+|+..... ..+...++...+.+++++||+++.|+++++..+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999998877653 35688999999999865432 34555667777789999999999999999999998
Q ss_pred HHh
Q psy125 166 KLI 168 (385)
Q Consensus 166 ~l~ 168 (385)
.+.
T Consensus 162 ~~~ 164 (166)
T cd04122 162 KIY 164 (166)
T ss_pred HHh
Confidence 764
No 42
>KOG0095|consensus
Probab=99.94 E-value=6e-27 Score=177.20 Aligned_cols=116 Identities=38% Similarity=0.639 Sum_probs=111.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|..|||||+|..+|..+-|+.....|+|+++..+.+.+++.+++++||||+||++|+++...||+.||++|||
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
||++...||+- |+|||||...||+.+|..++.
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence 99999999976 899999999999999999887
Q ss_pred HHhc
Q psy125 336 KLIG 339 (385)
Q Consensus 336 ~i~~ 339 (385)
.+..
T Consensus 167 rli~ 170 (213)
T KOG0095|consen 167 RLIS 170 (213)
T ss_pred HHHH
Confidence 6654
No 43
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.94 E-value=5e-25 Score=181.49 Aligned_cols=159 Identities=31% Similarity=0.542 Sum_probs=136.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|.+|||||||+++++.+.+.+...++.+.+........+...+.+.+|||+|++.+..++..++.++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888887788777776666677788899999999999999999999999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 90 DVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
|++++.+++.+..|+..+.....+.|+++++||+|+.... ..+...+....+.+++++||+++.|+++++..+++.+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999998888998887766789999999999985432 233444555567789999999999999999999987643
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.94 E-value=4.1e-25 Score=185.14 Aligned_cols=160 Identities=25% Similarity=0.428 Sum_probs=136.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|..|||||||+++++.+.+...+.++.|.+........++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999998887777777888899999999999998888888999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcch----h---hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR----K---VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~----~---~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (385)
|++++.+++++..|+..+.+... ..| ++|+||+|+... . ...+...++...+.+++++||+++.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999988876433 345 688999998421 1 12334456666778999999999999999999
Q ss_pred HHHHHHhcC
Q psy125 162 WLARKLIGD 170 (385)
Q Consensus 162 ~i~~~l~~~ 170 (385)
++++.+..-
T Consensus 160 ~l~~~l~~~ 168 (182)
T cd04128 160 IVLAKAFDL 168 (182)
T ss_pred HHHHHHHhc
Confidence 999988653
No 45
>KOG0096|consensus
Probab=99.94 E-value=3.8e-26 Score=180.45 Aligned_cols=206 Identities=84% Similarity=1.306 Sum_probs=191.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
...++++++|+.|.||||++++.+.+.+...+.++.|+.........+.+.+++..|||.|++.+..+...++-+..+++
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 47899999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
+.||+.......++.+|...+.+.++++|+++++||.|...+....+...+.+...+.++++|++++.+.+.-|.++++.
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarK 167 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARK 167 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHhhh
Confidence 99999999999999999999999899999999999999877665555556777788899999999999999999999999
Q ss_pred HhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCc
Q psy125 167 LIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDD 212 (385)
Q Consensus 167 l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 212 (385)
+.++|.+.++..|.+.+|+...|.....+....+.+.....++.+.
T Consensus 168 l~G~p~Lefva~paLaPpev~~d~~~~~q~e~dl~~a~t~~lp~ed 213 (216)
T KOG0096|consen 168 LTGDPSLEFVAMPALAPPEVIMDYWLQRQHEHDLAEAQTTALPDED 213 (216)
T ss_pred hcCCCCeEEEeccccCCCeeeccchhhHHHHHHHHHHhccCCCccc
Confidence 9999999999999999999999999999999888888877777654
No 46
>KOG0093|consensus
Probab=99.94 E-value=1.6e-26 Score=174.45 Aligned_cols=120 Identities=28% Similarity=0.559 Sum_probs=113.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+|+.++|.+.||||+++.+++.+.|...+-+|.|.++..+.+--..+.++++||||+||++|+.+...|||++.|+|||
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 47999999999999999999999999999999999999999887777889999999999999999999999999999999
Q ss_pred EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
||+|+.+||+. |+|+|||.|.||+++|..++.
T Consensus 101 yDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred EecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence 99999999988 999999999999999999999
Q ss_pred HHhcCCCc
Q psy125 336 KLIGDPNL 343 (385)
Q Consensus 336 ~i~~~~~~ 343 (385)
.|-.+.+.
T Consensus 181 ~Ic~kmse 188 (193)
T KOG0093|consen 181 IICDKMSE 188 (193)
T ss_pred HHHHHhhh
Confidence 98776554
No 47
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=3.5e-25 Score=190.79 Aligned_cols=161 Identities=20% Similarity=0.366 Sum_probs=139.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+++|+.|||||||+++|+.+.+...+.++.+..+.. ....+...+.+.+|||+|++.+..+...+++++|++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 46899999999999999999999999998899998876643 46677889999999999999998888899999999999
Q ss_pred EEeCCChhhhhc-HHHHHHHHHHhcCCCCEEEEEeCCCCcch--------------hhhHHHHHHHHhcCC-eEEEEcCC
Q psy125 88 MFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIKDR--------------KVKAKSIVFHRKKNL-QYYDISAK 151 (385)
Q Consensus 88 V~d~~~~~~~~~-~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~Sa~ 151 (385)
|||++++.+|+. +..|+..+....++.|+++|+||+|+... ....+...++...+. .++++||+
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAk 170 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAF 170 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCC
Confidence 999999999987 47899988876678899999999998531 124466778888887 69999999
Q ss_pred CCC-ChHHHHHHHHHHHhc
Q psy125 152 SNY-NFEKPFLWLARKLIG 169 (385)
Q Consensus 152 ~~~-gi~~l~~~i~~~l~~ 169 (385)
++. |++++|..++..+..
T Consensus 171 tg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 171 TSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred cCCcCHHHHHHHHHHHHHH
Confidence 997 899999999998754
No 48
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.94 E-value=6.6e-25 Score=181.59 Aligned_cols=159 Identities=27% Similarity=0.591 Sum_probs=136.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||++++..+.+...+.++.|.++...........+.+.+|||+|.+.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999998888888888887776666666777899999999999988888889999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
|++++.+++.+..|+..+.... .+.|+++++||+|+.+.+. ......+....+.+++++||+++.|+.+++..++..
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999998887643 4789999999999865432 234445566667789999999999999999999887
Q ss_pred Hh
Q psy125 167 LI 168 (385)
Q Consensus 167 l~ 168 (385)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
No 49
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.94 E-value=8e-25 Score=181.49 Aligned_cols=162 Identities=29% Similarity=0.617 Sum_probs=139.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+++|++|||||||++++.++.+...+.++.+.++...........+.+.+|||+|++.+......++.++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999999999988889999988777777777788999999999999888888889999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|||++++.++..+..|+..+.... .+.|+++++||.|+..... ..+...+......+++++||+++.|+.+++..++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999989998887643 4689999999999975332 3344556666778999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 98753
No 50
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.94 E-value=6.8e-25 Score=180.64 Aligned_cols=157 Identities=27% Similarity=0.569 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++.+.+.+.+.++.|.+............+.+.+||++|++.+...+..++.++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888777666777777899999999999988888888999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
|++++.+++.+..|+..+.... .+.|+++|+||.|+...+. ..+...+.+..+.+++++||+++.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999999998877644 3689999999999865432 345555666677899999999999999999999875
No 51
>PTZ00369 Ras-like protein; Provisional
Probab=99.93 E-value=9.4e-25 Score=184.65 Aligned_cols=164 Identities=25% Similarity=0.504 Sum_probs=136.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
|.++.+||+++|.+|||||||+++++.+.+...+.++.+.++ ......+...+.+.+|||+|++.+..++..++.++++
T Consensus 1 ~~~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ 79 (189)
T PTZ00369 1 MASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQG 79 (189)
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCE
Confidence 446789999999999999999999999888878888887665 3445667788999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
+++|||++++.+++.+..|+..+.... .+.|+++++||+|+..... ..+...+....+.+++++||+++.|+++++
T Consensus 80 iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~ 159 (189)
T PTZ00369 80 FLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAF 159 (189)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHH
Confidence 999999999999999888888876632 4789999999999854322 223444555556789999999999999999
Q ss_pred HHHHHHHhc
Q psy125 161 LWLARKLIG 169 (385)
Q Consensus 161 ~~i~~~l~~ 169 (385)
.+|++.+..
T Consensus 160 ~~l~~~l~~ 168 (189)
T PTZ00369 160 YELVREIRK 168 (189)
T ss_pred HHHHHHHHH
Confidence 999987754
No 52
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.93 E-value=8e-25 Score=182.02 Aligned_cols=160 Identities=27% Similarity=0.473 Sum_probs=135.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+||+++|.+|||||||+++++++.+...+.++.+..+. .....++..+.+.+|||+|++.+..++..++..+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 479999999999999999999999888888888875443 3355677788999999999999999999999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
||++++.+|+.+..|+..+.+. ..+.|+++|+||+|+...+. ..+...++...+.+++++||+++.|++++|.+|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999988887776653 25789999999999865332 3345556666788999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 161 ~~~~~ 165 (172)
T cd04141 161 REIRR 165 (172)
T ss_pred HHHHH
Confidence 87754
No 53
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.93 E-value=1.5e-24 Score=179.73 Aligned_cols=160 Identities=32% Similarity=0.643 Sum_probs=137.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+||+++|++|||||||+++++.+.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999998888877788888777766677777788999999999998888888999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
||++++.++..+..|+..+.... .+.|+++++||+|+..... ..+...+....+.+++++|++++.|+.+++..|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999998887644 5689999999999865432 24455566667789999999999999999999998
Q ss_pred HHh
Q psy125 166 KLI 168 (385)
Q Consensus 166 ~l~ 168 (385)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 764
No 54
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.93 E-value=1.3e-24 Score=185.15 Aligned_cols=163 Identities=30% Similarity=0.591 Sum_probs=140.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+++|++|||||||+++++++.+...+.++.+...........+..+.+.+||+||++.+..++..++.+++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46899999999999999999999988887888888877766666667778899999999999888888999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
|||++++.+++.+..|+..+.......|+++|+||+|+..... ..+...+....+..++++|++++.|+++++.+|++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 9999999999999999998877667899999999999865432 23445566666789999999999999999999999
Q ss_pred HHhcC
Q psy125 166 KLIGD 170 (385)
Q Consensus 166 ~l~~~ 170 (385)
.+...
T Consensus 165 ~~~~~ 169 (199)
T cd04110 165 LVLRA 169 (199)
T ss_pred HHHHh
Confidence 87653
No 55
>KOG0097|consensus
Probab=99.93 E-value=2.6e-26 Score=172.23 Aligned_cols=123 Identities=31% Similarity=0.570 Sum_probs=117.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+|.+++|+-|||||+++.+|....|......|+|+++.+..+.+.+.+++++||||+||++|+.+...||+++-|+++|
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv 90 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 90 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
||++.|.+++. |+|+|||+|.||+++|...++
T Consensus 91 yditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~ak 170 (215)
T KOG0097|consen 91 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAK 170 (215)
T ss_pred EEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHH
Confidence 99999999987 999999999999999999999
Q ss_pred HHhcCCCcccc
Q psy125 336 KLIGDPNLEFV 346 (385)
Q Consensus 336 ~i~~~~~~~~~ 346 (385)
+|.++-+....
T Consensus 171 kiyqniqdgsl 181 (215)
T KOG0097|consen 171 KIYQNIQDGSL 181 (215)
T ss_pred HHHHhhhcCcc
Confidence 99987765443
No 56
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.93 E-value=1.3e-24 Score=180.34 Aligned_cols=159 Identities=25% Similarity=0.554 Sum_probs=137.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++++.+...+.++.+.++........+..+.+.+|||+|.+.+..++..++.++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888999998887777777788899999999999888888888999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhc------CCCCEEEEEeCCCCcchh--hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVC------ENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~------~~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (385)
|++++.+++.+..|+..+.... .+.|+++|+||+|+.... ...+...+....+.+++++||+++.|+++++.
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999998888988887643 368999999999986322 23344456666678999999999999999999
Q ss_pred HHHHHHh
Q psy125 162 WLARKLI 168 (385)
Q Consensus 162 ~i~~~l~ 168 (385)
.|++.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998764
No 57
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.93 E-value=1.5e-24 Score=180.80 Aligned_cols=157 Identities=27% Similarity=0.456 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|.+|||||||+++++.+.+...+.|+.+..+.. ........+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 799999999999999999999999888888888866643 3455677899999999999999888888999999999999
Q ss_pred eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcC-CeEEEEcCCCC
Q psy125 90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKN-LQYYDISAKSN 153 (385)
Q Consensus 90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~Sa~~~ 153 (385)
|++++.+++++. .|+..+....++.|+++|+||+|+..... ..+...++...+ ..++++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 999999999886 58887776657899999999999854311 123334555555 68999999999
Q ss_pred CChHHHHHHHHHHH
Q psy125 154 YNFEKPFLWLARKL 167 (385)
Q Consensus 154 ~gi~~l~~~i~~~l 167 (385)
.|++++|..++++.
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998854
No 58
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=1.3e-24 Score=182.63 Aligned_cols=162 Identities=31% Similarity=0.594 Sum_probs=136.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC----------CeeEEEEEEeCCCccccccchhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN----------RGAIRFNVWDTAGQEKFGGLRDG 77 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~----------~~~~~~~i~Dt~g~~~~~~~~~~ 77 (385)
+.+||+++|++|||||||++++..+.+...+.++.+.+......... ...+.+.+|||+|++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999988888888877655444332 35689999999999988888899
Q ss_pred hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCC
Q psy125 78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSN 153 (385)
Q Consensus 78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~ 153 (385)
+++++|++++|||++++.++..+..|+..+... ..+.|+++|+||+|+...+. ..+...+....+.+++++||+++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 999999999999999999999999999887663 25789999999999865322 34456677777789999999999
Q ss_pred CChHHHHHHHHHHHhc
Q psy125 154 YNFEKPFLWLARKLIG 169 (385)
Q Consensus 154 ~gi~~l~~~i~~~l~~ 169 (385)
.|+++++..|++.+.+
T Consensus 163 ~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 163 TNVEKAVERLLDLVMK 178 (180)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987653
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.93 E-value=1.4e-24 Score=179.06 Aligned_cols=157 Identities=31% Similarity=0.653 Sum_probs=134.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC--CeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN--RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~--~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+||+++|++|+|||||++++..+.+...+.++.+.++........ ...+.+.+|||||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988888888888877765555555 668899999999999888888899999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
|||++++.+++.+..|+..+.....+.|+++|+||.|+..... ..+...++...+.+++++|++++.|+++++..|+.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999899988877667899999999999865332 34455667777789999999999999999998875
Q ss_pred H
Q psy125 166 K 166 (385)
Q Consensus 166 ~ 166 (385)
.
T Consensus 161 ~ 161 (162)
T cd04106 161 K 161 (162)
T ss_pred h
Confidence 4
No 60
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.93 E-value=2.4e-24 Score=178.74 Aligned_cols=159 Identities=29% Similarity=0.498 Sum_probs=135.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
||+++|++|||||||+++++.+.+...+.++.+.+.........+..+.+.+|||+|++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988999999988776767777778999999999999998889999999999999999
Q ss_pred CCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh----hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 91 VTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
++++.++..+..|+..+.+.. .+.|+++|+||.|+..... ......+......+++++||+++.|++++|..|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999889998876532 2467899999999854322 2233445555567899999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88754
No 61
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.93 E-value=2e-24 Score=178.38 Aligned_cols=158 Identities=30% Similarity=0.578 Sum_probs=129.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+||+++|++|||||||+++++.+.+...+.++.+.. .......+...+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 3799999999999999999999988877777776633 334456677788999999999999998889999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
||++++.+++.+..|+..+... ..+.|+++++||+|+...+. ..+...+....+.+++++||+++.|+.+++.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999888888877653 24789999999999865322 2233445555567899999999999999999998
Q ss_pred HHH
Q psy125 165 RKL 167 (385)
Q Consensus 165 ~~l 167 (385)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 754
No 62
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.93 E-value=2.4e-24 Score=178.06 Aligned_cols=158 Identities=28% Similarity=0.551 Sum_probs=132.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
++||+++|.+|||||||+++++.+.+...+.++.+.+.. .........+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 479999999999999999999988887777777775543 3455667788999999999999999999999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
||+++..+++.+..|+..+... ..+.|+++++||+|+..... ......+....+.+++++||+++.|+++++.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999888888877653 36789999999999965432 2233445556668999999999999999999998
Q ss_pred HHH
Q psy125 165 RKL 167 (385)
Q Consensus 165 ~~l 167 (385)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 765
No 63
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.93 E-value=2.3e-24 Score=184.84 Aligned_cols=161 Identities=24% Similarity=0.451 Sum_probs=136.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+||+|||.+|||||||+++|..+.+...+.|+.+..+. ....++...+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999998889999887664 4556788889999999999999988889999999999999
Q ss_pred EeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcch--------------hhhHHHHHHHHhcCC-eEEEEcCCC
Q psy125 89 FDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR--------------KVKAKSIVFHRKKNL-QYYDISAKS 152 (385)
Q Consensus 89 ~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (385)
||++++.+|+.+. .|...+....++.|+++|+||+|+... ....+...++...+. .++++||++
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999874 677776666678999999999998642 112345667777774 899999999
Q ss_pred CC-ChHHHHHHHHHHHhcC
Q psy125 153 NY-NFEKPFLWLARKLIGD 170 (385)
Q Consensus 153 ~~-gi~~l~~~i~~~l~~~ 170 (385)
+. |+.++|..++++.+..
T Consensus 160 ~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 160 SERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 88 4999999999987554
No 64
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.93 E-value=4e-24 Score=177.42 Aligned_cols=161 Identities=29% Similarity=0.559 Sum_probs=139.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+++|++|||||||+++++.+.+...+.++.|.++........+..+.+.+||++|.+.+......+++++|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999988888888888888887888888888999999999999888888889999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|+|++++.+++.+..|+..+... ..+.|+++++||.|+..... ..+...+....+..++++|++++.|+.+++..++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA 162 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999888763 35789999999999864322 3344556666778999999999999999999998
Q ss_pred HHHh
Q psy125 165 RKLI 168 (385)
Q Consensus 165 ~~l~ 168 (385)
+.+.
T Consensus 163 ~~~~ 166 (168)
T cd01866 163 KEIY 166 (168)
T ss_pred HHHH
Confidence 8764
No 65
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.93 E-value=3.1e-25 Score=186.28 Aligned_cols=120 Identities=25% Similarity=0.492 Sum_probs=112.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|..+||||+++.+|..+.|...+.+++|.++....+.+++..+.+.+|||+|+++|..++..|++++|++||
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999999999998898999998888888888889999999999999999999999999999999
Q ss_pred EEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 303 MFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 303 v~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
|||++++.||++ |+||||++|.||+++|.+|++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 999999999999 999999999999999999999
Q ss_pred HHhcCCC
Q psy125 336 KLIGDPN 342 (385)
Q Consensus 336 ~i~~~~~ 342 (385)
.+.....
T Consensus 165 ~i~~~~~ 171 (189)
T cd04121 165 IVLMRHG 171 (189)
T ss_pred HHHHhcC
Confidence 8876443
No 66
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.93 E-value=5.9e-25 Score=186.01 Aligned_cols=126 Identities=97% Similarity=1.570 Sum_probs=115.7
Q ss_pred ECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125 230 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 309 (385)
Q Consensus 230 ~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 309 (385)
+|.+|||||+++.+|+.+.|...+.+|+|.++..+.+.+++..+.+.||||+|+++|..+++.||++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 59999999999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred hhhhh---------------------------------------------hheeccccCCCchHHHHHHHHHHhcCCCcc
Q psy125 310 ITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLARKLIGDPNLE 344 (385)
Q Consensus 310 ~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~~~~~~ 344 (385)
.||++ |+||||++|.||+++|.+|++++.......
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~ 160 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 160 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcccce
Confidence 99986 999999999999999999999998876666
Q ss_pred cccCCCCCCCc
Q psy125 345 FVAMPALLPPE 355 (385)
Q Consensus 345 ~~~~~~~~~~~ 355 (385)
+...+...++.
T Consensus 161 ~~~~~~~~~~~ 171 (200)
T smart00176 161 FVAMPALAPPE 171 (200)
T ss_pred eccCcccCCcc
Confidence 66666666654
No 67
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=3.7e-24 Score=180.91 Aligned_cols=158 Identities=28% Similarity=0.477 Sum_probs=131.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
||+++|++|||||||+++|+.+.+...+.++.+..+.. ....+...+.+.+|||+|++.+..++..++.++|++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 89999999999999999999998888788887766542 34456677999999999999988888889999999999999
Q ss_pred CCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcC-CeEEEEcCCCCC
Q psy125 91 VTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKN-LQYYDISAKSNY 154 (385)
Q Consensus 91 ~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~Sa~~~~ 154 (385)
++++.+|+.+. .|+..+.....+.|+++|+||+|+..... ..+...++...+ ..++++||+++.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 99999998876 58888877667899999999999865432 122334444444 589999999999
Q ss_pred ChHHHHHHHHHHHhc
Q psy125 155 NFEKPFLWLARKLIG 169 (385)
Q Consensus 155 gi~~l~~~i~~~l~~ 169 (385)
|++++|.++++.+..
T Consensus 161 ~v~e~f~~l~~~~~~ 175 (189)
T cd04134 161 GVNEAFTEAARVALN 175 (189)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998764
No 68
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.93 E-value=4.2e-24 Score=176.81 Aligned_cols=159 Identities=32% Similarity=0.604 Sum_probs=136.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+||+++|++|||||||+++++++.+...+.++.+.+............+.+.+||+||++.+..+...++.+++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999888888888988887777777777778999999999998888888899999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
||++++.++..+..|+..+..... +.|+++|+||+|+...+. ..+...+....+..++++||+++.|+++++..++.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999988877544 589999999999865332 33445566666778999999999999999999887
Q ss_pred HH
Q psy125 166 KL 167 (385)
Q Consensus 166 ~l 167 (385)
.+
T Consensus 163 ~i 164 (165)
T cd01868 163 EI 164 (165)
T ss_pred Hh
Confidence 64
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.93 E-value=4.5e-24 Score=176.00 Aligned_cols=158 Identities=27% Similarity=0.530 Sum_probs=130.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+||+++|++|||||||+++++++.+...+.++.+... ......+...+.+.+|||+|++.+..++..++.+++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999888777777777554 33455666778899999999999988899999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
||+++..+++.+..|+..+.+. ..+.|+++++||+|+..... ..+...+....+.+++++||+++.|+++++.++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999998888888777664 24789999999999865332 33444555666779999999999999999999987
Q ss_pred HH
Q psy125 166 KL 167 (385)
Q Consensus 166 ~l 167 (385)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 70
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.93 E-value=4.1e-24 Score=178.05 Aligned_cols=156 Identities=29% Similarity=0.536 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|.+|||||||+.+++.+.+...+.++.+.... .....+...+.+.+|||+|++.+..++..++.++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999988888888765443 34456778899999999999998888888999999999999
Q ss_pred eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcC-CeEEEEcCCCC
Q psy125 90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKN-LQYYDISAKSN 153 (385)
Q Consensus 90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~Sa~~~ 153 (385)
|++++.+|+++. .|+..+.....+.|+++|+||+|+.... ...+...++...+ ..++++||+++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 999999999885 5887776666789999999999985421 1233445665555 48999999999
Q ss_pred CChHHHHHHHHHH
Q psy125 154 YNFEKPFLWLARK 166 (385)
Q Consensus 154 ~gi~~l~~~i~~~ 166 (385)
.|++++|..+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998864
No 71
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.93 E-value=4.7e-24 Score=176.17 Aligned_cols=158 Identities=28% Similarity=0.524 Sum_probs=130.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+||+++|.+|||||||+++++.+.+...+.++.+ .........++..+.+.+|||+|++.+..++..++.++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999988877777665 33445566677788899999999999999999999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
||++++.+++++..|+..+.... .+.|+++|+||+|+..... ..+...+....+.+++++||+++.|+.+++.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999888888777642 5789999999999854322 2233445555567899999999999999999998
Q ss_pred HHH
Q psy125 165 RKL 167 (385)
Q Consensus 165 ~~l 167 (385)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 72
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.93 E-value=6.1e-24 Score=175.31 Aligned_cols=158 Identities=34% Similarity=0.691 Sum_probs=143.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
||+++|++|||||||+++|..+.+...+.++.|.+........+...+.+.+||++|++.+......++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999988889999999999999999999888888889999999999999
Q ss_pred CCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125 91 VTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l 167 (385)
++++.+++.+..|+..+..... +.|+++++||.|+...+. ..+...++...+.+++++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999988766 689999999999876332 4456778888889999999999999999999999876
Q ss_pred h
Q psy125 168 I 168 (385)
Q Consensus 168 ~ 168 (385)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 73
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.93 E-value=4.7e-24 Score=183.97 Aligned_cols=160 Identities=28% Similarity=0.500 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC-eeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
+||+++|++|||||||+++|+.+.+...+.++.+............ ..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999888888889998777666666543 578999999999998888888999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
||++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...+....+..++++||++|.|++++|.+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999988988887643 2457899999999864322 23445566667788999999999999999999
Q ss_pred HHHHHhc
Q psy125 163 LARKLIG 169 (385)
Q Consensus 163 i~~~l~~ 169 (385)
|++.+..
T Consensus 161 l~~~l~~ 167 (215)
T cd04109 161 LAAELLG 167 (215)
T ss_pred HHHHHHh
Confidence 9998765
No 74
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.92 E-value=5.5e-24 Score=175.38 Aligned_cols=157 Identities=31% Similarity=0.625 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++++.+.....++.+..+...........+.+.+||+||++.+......+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888888777777777778899999999999988888888999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
|++++.++..+..|+..+... .++.|+++++||.|+..... ..+...+....+..++++|++++.|+++++.++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 999999999988898877653 36889999999999865332 344555666777899999999999999999999875
No 75
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.92 E-value=6.5e-24 Score=175.63 Aligned_cols=156 Identities=25% Similarity=0.436 Sum_probs=127.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++++.+...+.++.+.+. ......+...+.+.+|||+|++.+..+...++..++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988877777776544 334455667889999999999988888888889999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
|+++..+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...+.......++++||+++.|+++++.+|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999998888877665532 5789999999999865222 223344555566789999999999999999998
Q ss_pred HHH
Q psy125 164 ARK 166 (385)
Q Consensus 164 ~~~ 166 (385)
+..
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 76
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=9.3e-24 Score=178.55 Aligned_cols=161 Identities=31% Similarity=0.597 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++|+++.+...+.++.|.++.......++..+.+.+|||+|.+.+...+..++.++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999998887778888888877777777778899999999999988888889999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
|++++.++..+..|+..+.... .+.|+++++||.|+..... ......+....+.+++++||+++.|+++++..+++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999988887643 4678999999999874332 233445566667799999999999999999999998
Q ss_pred HhcC
Q psy125 167 LIGD 170 (385)
Q Consensus 167 l~~~ 170 (385)
+...
T Consensus 161 ~~~~ 164 (188)
T cd04125 161 IIKR 164 (188)
T ss_pred HHHH
Confidence 7653
No 77
>KOG0093|consensus
Probab=99.92 E-value=1.7e-24 Score=163.54 Aligned_cols=161 Identities=26% Similarity=0.560 Sum_probs=146.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+|+.++|...+|||||+.++++..+...+.++.|+.+..+.+.-..+.+.+.+|||.|+++++.+.-.++++++++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 46999999999999999999999999999999999999888777777889999999999999999999999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
||+++.++|..+..|...+... ..+.++|+++||||+..++. .+....++...+..+|+.|++.+.+++++|..+..
T Consensus 101 yDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred EecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence 9999999999999999888763 35899999999999987765 45566788889999999999999999999999888
Q ss_pred HHhc
Q psy125 166 KLIG 169 (385)
Q Consensus 166 ~l~~ 169 (385)
.+..
T Consensus 181 ~Ic~ 184 (193)
T KOG0093|consen 181 IICD 184 (193)
T ss_pred HHHH
Confidence 7754
No 78
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.92 E-value=8.2e-24 Score=176.00 Aligned_cols=159 Identities=31% Similarity=0.657 Sum_probs=134.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+++|++|||||||+++++.+.+...+.++.|.+........+...+.+.+||+||++.+..++..+++++|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 45899999999999999999999988888888888877766677778888999999999999988888899999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcC-CeEEEEcCCCCCChHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 160 (385)
|||++++.+++.+..|+..+.... .+.|+++++||.|+..... ..+..++....+ ..++++||+++.|+.+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAF 163 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHH
Confidence 999999999999888888776532 4679999999999864332 344555656555 489999999999999999
Q ss_pred HHHHHH
Q psy125 161 LWLARK 166 (385)
Q Consensus 161 ~~i~~~ 166 (385)
..+++.
T Consensus 164 ~~~~~~ 169 (170)
T cd04116 164 EEAVRR 169 (170)
T ss_pred HHHHhh
Confidence 998864
No 79
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=8.2e-24 Score=175.09 Aligned_cols=159 Identities=31% Similarity=0.609 Sum_probs=133.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.+||+++|++|+|||||+++++++.+...+.++.+.+............+.+.+|||||++.+......+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999888888778888877766667777777899999999999888888889999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i 163 (385)
|||++++.+++.+..|+..+... ..+.|+++|+||+|+...+. ......+.+.... .++++|++++.|+++++..+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999988999888763 35789999999999865432 2344455555554 78999999999999999998
Q ss_pred HHH
Q psy125 164 ARK 166 (385)
Q Consensus 164 ~~~ 166 (385)
++.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 875
No 80
>KOG0095|consensus
Probab=99.92 E-value=1.3e-24 Score=164.61 Aligned_cols=162 Identities=35% Similarity=0.628 Sum_probs=142.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
-+||+++|..|+|||+|+++|..+-+.+....++|+.+-.+...+.+..+++.+|||.|+++++++...|++.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHhcCC-CCEEEEEeCCCCcchhhh--HHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~~~~-~~~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
||++...+|.-++.|+.++.....+ .-.++|+||+|+.+++.. .-..++......-+.++||+.-.+++++|..++.
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence 9999999999999999998875433 335799999999876542 2234566666667889999999999999999988
Q ss_pred HHhcC
Q psy125 166 KLIGD 170 (385)
Q Consensus 166 ~l~~~ 170 (385)
.+...
T Consensus 167 rli~~ 171 (213)
T KOG0095|consen 167 RLISE 171 (213)
T ss_pred HHHHH
Confidence 77553
No 81
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=7.7e-24 Score=179.36 Aligned_cols=161 Identities=29% Similarity=0.622 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
+||+++|++|||||||+++++.+.+.. .+.++.+.+........++..+.+.+|||||+..+...+..++.++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999998887753 5677777777666677778889999999999998888888899999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
+|+++..+++++..|+..+.... .+.|+++++||.|+...+. ..+...+....+.+++++||+++.|+++++.+|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999998888988887654 3789999999999864322 33455566667789999999999999999999999
Q ss_pred HHhcC
Q psy125 166 KLIGD 170 (385)
Q Consensus 166 ~l~~~ 170 (385)
.+...
T Consensus 161 ~~~~~ 165 (191)
T cd04112 161 ELKHR 165 (191)
T ss_pred HHHHh
Confidence 88765
No 82
>PLN03110 Rab GTPase; Provisional
Probab=99.92 E-value=9.8e-24 Score=181.83 Aligned_cols=162 Identities=31% Similarity=0.556 Sum_probs=140.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+++|++|||||||+++|+.+.+...+.++.|.++....+......+.+.+|||+|++.+......++++++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 56899999999999999999999988887888899988877777888888999999999999888888899999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|||++++.+++.+..|+..+.... .+.|+++++||+|+...+. ......+....+.+++++||+++.|+++++..|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999989988877643 4789999999999864332 2344556666778999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
..+.+
T Consensus 171 ~~i~~ 175 (216)
T PLN03110 171 LEIYH 175 (216)
T ss_pred HHHHH
Confidence 88755
No 83
>KOG0096|consensus
Probab=99.92 E-value=8e-25 Score=173.02 Aligned_cols=163 Identities=83% Similarity=1.301 Sum_probs=156.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+|++++|+.|.||+++..+++.++|...|.+|.|+..+.....-+.+.+++..|||+|++.+..+...||-.+.++|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 56899999999999999999999999999999999999988887766667899999999999999999999999999999
Q ss_pred EEeCCChhhhhh---------------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125 303 MFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLARKL 337 (385)
Q Consensus 303 v~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i 337 (385)
+||++.+.++.+ |+++|||++-|.+..|.|+++++
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHhhhh
Confidence 999999999988 99999999999999999999999
Q ss_pred hcCCCcccccCCCCCCCccccChhhhhHHHHHHHHhhccCCCCCCCCC
Q psy125 338 IGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 385 (385)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (385)
..+++..+.++|++.||...++.+.++..+.++-+.+..+.|++|+++
T Consensus 169 ~G~p~Lefva~paLaPpev~~d~~~~~q~e~dl~~a~t~~lp~ed~~~ 216 (216)
T KOG0096|consen 169 TGDPSLEFVAMPALAPPEVIMDYWLQRQHEHDLAEAQTTALPDEDDKL 216 (216)
T ss_pred cCCCCeEEEeccccCCCeeeccchhhHHHHHHHHHHhccCCCcccccC
Confidence 999999999999999999999999999999999999999999999864
No 84
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.92 E-value=1.1e-23 Score=178.92 Aligned_cols=161 Identities=25% Similarity=0.476 Sum_probs=136.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
+||+++|++|||||||+++|+.+.+.. .+.++.|.++........+..+.+.+|||+|++.+......++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988874 5778888877777777788889999999999998888888888999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh----h--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK----V--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~----~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
||+++..+++.+..|+..+.....+.|+++|+||.|+.... . ..+...+....+.+++++||+++.|+++++..
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999988888988887655679999999999985321 1 22344555666778999999999999999999
Q ss_pred HHHHHhcC
Q psy125 163 LARKLIGD 170 (385)
Q Consensus 163 i~~~l~~~ 170 (385)
|++.+...
T Consensus 161 i~~~~~~~ 168 (193)
T cd04118 161 VAEDFVSR 168 (193)
T ss_pred HHHHHHHh
Confidence 99988654
No 85
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.92 E-value=1.2e-24 Score=180.74 Aligned_cols=114 Identities=29% Similarity=0.510 Sum_probs=106.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|.++||||+|+.+|+.+.|...|.+|+|.++ ...+.+++..+++.||||+|+++|..+++.|+++++++||||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999999999998766 455677888999999999999999999999999999999999
Q ss_pred eCCChhhhhh-----------------------------------------------------------hheeccccCCC
Q psy125 305 DVTSRITYKN-----------------------------------------------------------YYDISAKSNYN 325 (385)
Q Consensus 305 d~~~~~s~~~-----------------------------------------------------------~~e~Sak~~~~ 325 (385)
|++++.||++ |+|||||+|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 9999999987 79999999999
Q ss_pred chHHHHHHHHHHhc
Q psy125 326 FEKPFLWLARKLIG 339 (385)
Q Consensus 326 v~~~f~~l~~~i~~ 339 (385)
|+++|..+++.+.+
T Consensus 161 V~~~F~~~~~~~~~ 174 (176)
T cd04133 161 VKAVFDAAIKVVLQ 174 (176)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998743
No 86
>KOG0083|consensus
Probab=99.92 E-value=2e-26 Score=171.07 Aligned_cols=113 Identities=28% Similarity=0.651 Sum_probs=105.7
Q ss_pred EEECCCCCCHHHHHHHHhcCccc-cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeC
Q psy125 228 VLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 306 (385)
Q Consensus 228 ~~~G~~~vgks~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~ 306 (385)
+++|++++|||+++.||-.+.|- ....+|+|.++..+.+.+++.+++++||||+||++|+++...||+++|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999998877664 46789999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125 307 TSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARKLI 338 (385)
Q Consensus 307 ~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~ 338 (385)
+++.||++ |+|||||+|.||+.+|..|++.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999 999999999999999999999986
Q ss_pred cC
Q psy125 339 GD 340 (385)
Q Consensus 339 ~~ 340 (385)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 54
No 87
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=8.4e-24 Score=178.75 Aligned_cols=161 Identities=30% Similarity=0.473 Sum_probs=132.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++|+.+.+...+.++.+..+.......+...+.+.+|||+|++.+...+..++.++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999888888787776654443322366789999999999988888888899999999999
Q ss_pred eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh------hhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHH
Q psy125 90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK------VKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~------~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~ 161 (385)
|++++.+++++. .|+..+.....+.|+++|+||.|+.... ...+...+....+. +++++||+++.|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 160 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFD 160 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHH
Confidence 999999998875 4877776655789999999999986532 13345556666666 899999999999999999
Q ss_pred HHHHHHhcC
Q psy125 162 WLARKLIGD 170 (385)
Q Consensus 162 ~i~~~l~~~ 170 (385)
.+++.+...
T Consensus 161 ~l~~~~~~~ 169 (187)
T cd04132 161 TAIEEALKK 169 (187)
T ss_pred HHHHHHHhh
Confidence 999987543
No 88
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.92 E-value=1.6e-23 Score=173.17 Aligned_cols=159 Identities=30% Similarity=0.557 Sum_probs=130.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.+||+++|++|+|||||+++++.+.+...+.++.+... ......++..+.+.+|||||++.+..++..++.++|++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 358999999999999999999998877766666665433 3334566777899999999999988888899999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
|||+++..+++.+..|+..+.+. ..+.|+++++||+|+..... ..+...+....+.+++++||+++.|+++++..|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 99999999999888888877663 24789999999999865432 234445556667799999999999999999999
Q ss_pred HHHH
Q psy125 164 ARKL 167 (385)
Q Consensus 164 ~~~l 167 (385)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8764
No 89
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=8.3e-24 Score=179.00 Aligned_cols=158 Identities=30% Similarity=0.495 Sum_probs=130.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
||+++|.+|||||||+++|+.+.+...+.++.+.... .....+...+.+.+|||+|++.+...+..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6899999999999999999988887777777765443 334566777899999999999988888999999999999999
Q ss_pred CCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 91 VTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
+++..++..+..|+..+.... .+.|+++|+||+|+...+. ..+...+....+..++++||+++.|+++++..++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999888888776532 4689999999999864322 2334456666677899999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 160 ~~l~~ 164 (190)
T cd04144 160 RALRQ 164 (190)
T ss_pred HHHHH
Confidence 88754
No 90
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.92 E-value=2e-23 Score=173.60 Aligned_cols=159 Identities=30% Similarity=0.581 Sum_probs=134.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc-cchhhhhccCcEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-GLRDGYYIQGQCAII 87 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~-~~~~~~~~~~d~ill 87 (385)
.+||+++|++|||||||+++++.+.+...+.++.+.+............+.+.+|||+|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999988887888888887777777778888999999999998776 467788899999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCC---CCChHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKS---NYNFEKPF 160 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~l~ 160 (385)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+..... ......+......+++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998877633 5789999999999865443 2344556666678999999998 88999999
Q ss_pred HHHHHHH
Q psy125 161 LWLARKL 167 (385)
Q Consensus 161 ~~i~~~l 167 (385)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9888764
No 91
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=1.7e-23 Score=179.60 Aligned_cols=162 Identities=25% Similarity=0.541 Sum_probs=135.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEe-CCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
.+||+++|++|||||||+++++.+.+...+.++.|.+.....+.. ....+.+.+|||+|++.+......+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 489999999999999999999998887777788887766655555 3457899999999999888888899999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
|||++++.+++.+..|+..+.... ...|+++++||.|+..... ..+...+....+..++++|++++.|+++++..|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999998876532 3467889999999865322 334455666777899999999999999999999
Q ss_pred HHHHhcC
Q psy125 164 ARKLIGD 170 (385)
Q Consensus 164 ~~~l~~~ 170 (385)
++.+...
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9987553
No 92
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.92 E-value=1.9e-23 Score=172.78 Aligned_cols=158 Identities=27% Similarity=0.550 Sum_probs=129.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++.+.+...+.++.+... ......+...+.+.+|||||++++...+..++.+++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998887777666665332 344556677899999999999998888888999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
|++++.+++.+..|+..+.+.. .+.|+++++||+|+..... ......+....+.+++++||+++.|+++++.+|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999998888887776532 3689999999999865332 23344556666789999999999999999999988
Q ss_pred HHh
Q psy125 166 KLI 168 (385)
Q Consensus 166 ~l~ 168 (385)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 653
No 93
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.92 E-value=1.8e-24 Score=180.77 Aligned_cols=116 Identities=25% Similarity=0.392 Sum_probs=107.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|+++||||+|+.+|+.+.|...|.||++..+ .+.+.+++..+.+.||||+|+++|..+++.||+++|++|+
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 458999999999999999999999999999999998665 4567788899999999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125 303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK 321 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak 321 (385)
|||++++.||++ |+|||||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk 162 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 162 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence 999999999987 8899999
Q ss_pred cCCC-chHHHHHHHHHHhc
Q psy125 322 SNYN-FEKPFLWLARKLIG 339 (385)
Q Consensus 322 ~~~~-v~~~f~~l~~~i~~ 339 (385)
+|.| |+++|..+++.++.
T Consensus 163 ~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 163 QSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999 99999999997654
No 94
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=180.25 Aligned_cols=219 Identities=18% Similarity=0.162 Sum_probs=170.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hh
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RD 76 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~ 76 (385)
+.+++..|+++|+||||||||+|+ +.+.....+++.+.+||.....-...+..++.++||||....... ..
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~-l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNA-LVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CCceEEEEEEEcCCCCcHHHHHHH-HhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 457788999999999999999999 555667788999999999998888888999999999997654332 23
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhc--CCeEEEEcCCCC
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKK--NLQYYDISAKSN 153 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~--~~~~~~~Sa~~~ 153 (385)
..+..+|+++||+|++...... +.++....+. .+.|+++++||+|...... .....+.+... ...++++||+++
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~--d~~il~~lk~-~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPG--DEFILEQLKK-TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred HHhccCcEEEEEEeccccCCcc--HHHHHHHHhh-cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 4567899999999999864432 3343333322 4679999999999876555 23333333332 348999999999
Q ss_pred CChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCC------------
Q psy125 154 YNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMD------------ 221 (385)
Q Consensus 154 ~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------ 221 (385)
.|++.+...+...+... |++++++..+|.+.+..+.+.+||.+...+.+|.||+.....+
T Consensus 158 ~n~~~L~~~i~~~Lpeg--------~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I 229 (298)
T COG1159 158 DNVDTLLEIIKEYLPEG--------PWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKI 229 (298)
T ss_pred CCHHHHHHHHHHhCCCC--------CCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEE
Confidence 99999999999998765 6789999999999999999999999999999999986553222
Q ss_pred -------CCeeEEEEECCCCC
Q psy125 222 -------MPSFKCVLVGDGGT 235 (385)
Q Consensus 222 -------~~~~~i~~~G~~~v 235 (385)
+.+.|-+++|..|.
T Consensus 230 ~a~I~Ver~sQK~IiIGk~G~ 250 (298)
T COG1159 230 HATIYVERESQKGIIIGKNGA 250 (298)
T ss_pred EEEEEEecCCccceEECCCcH
Confidence 23567777887653
No 95
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.92 E-value=2e-23 Score=172.03 Aligned_cols=157 Identities=30% Similarity=0.557 Sum_probs=132.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++++.+...+.++.+.++...........+.+.+|||||+..+......++.++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999998888877788887777777777777789999999999988888888999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcchh-h-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK-V-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
|++++.+++.+..|+..+..... +.|+++++||+|+.... . ..+...+....+..++++|++++.|+++++.+|++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999998889888765433 68999999999984332 2 233445556667899999999999999999998775
No 96
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=2.4e-23 Score=185.46 Aligned_cols=194 Identities=14% Similarity=0.053 Sum_probs=146.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--------chhhhhccC
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYYIQG 82 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------~~~~~~~~~ 82 (385)
+|+|+|++|||||||+|+|++.. ...+++.+++|+.........+...+.+|||||...... ....++.++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~-~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK-ISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-EeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 79999999999999999977654 445667778888765544444556799999999754321 123456899
Q ss_pred cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh-HHHHHHHHhcCC-eEEEEcCCCCCChHHHH
Q psy125 83 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNL-QYYDISAKSNYNFEKPF 160 (385)
Q Consensus 83 d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~ 160 (385)
|++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+...... .....+...... +++++||+++.|+++++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 9999999999865543 233333332 47899999999998643332 222233333333 78999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhh
Q psy125 161 LWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMA 217 (385)
Q Consensus 161 ~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 217 (385)
..|...+... |++++++..+|...+..+.+.+++.....+.++.||...
T Consensus 157 ~~l~~~l~~~--------~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~ 205 (270)
T TIGR00436 157 AFIEVHLPEG--------PFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVR 205 (270)
T ss_pred HHHHHhCCCC--------CCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEE
Confidence 9999887544 668899999999999999999999999999999997654
No 97
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.92 E-value=2.5e-23 Score=171.99 Aligned_cols=158 Identities=28% Similarity=0.577 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~--~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
+||+++|++|||||||++++..+ .+...+.++.|.+......... +..+.+.+|||+|++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999998754 5777888888887766655554 46799999999999888888888999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
+|+|++++.++..+..|+..+.....+.|+++|+||+|+..... ......+....+.+++++|++++.|+++++..++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 99999999999888889988876556789999999999865432 2222334455567899999999999999999998
Q ss_pred HHH
Q psy125 165 RKL 167 (385)
Q Consensus 165 ~~l 167 (385)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04101 161 RAF 163 (164)
T ss_pred HHh
Confidence 875
No 98
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.92 E-value=3.1e-23 Score=171.25 Aligned_cols=159 Identities=31% Similarity=0.613 Sum_probs=136.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+||+++|++|||||||+|+++++.+...+.++.|.++.......+...+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999888777888888878777778888899999999999988888888889999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchh--hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
+|++++.++.....|+..+.... ...|+++++||+|+.... .......+....+..++++|++++.|+.+++.+|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999998888988877654 568899999999986422 233444566666789999999999999999999988
Q ss_pred HH
Q psy125 166 KL 167 (385)
Q Consensus 166 ~l 167 (385)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 99
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.92 E-value=3e-23 Score=172.94 Aligned_cols=161 Identities=28% Similarity=0.642 Sum_probs=133.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++++.+.....++.+.+............+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999998888777788887776666677778899999999999888888888999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhcC-----CCCEEEEEeCCCCcchh--hhHHHHHHHHhcC-CeEEEEcCCCCCChHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRK--VKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~~-----~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~ 161 (385)
|++++.+++....|...+..... +.|+++++||+|+.... .......+....+ .+++++|++++.|+++++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999998888788877665433 78999999999997322 2333444555555 6899999999999999999
Q ss_pred HHHHHHhcC
Q psy125 162 WLARKLIGD 170 (385)
Q Consensus 162 ~i~~~l~~~ 170 (385)
.+.+.+...
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999887653
No 100
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.92 E-value=3.1e-23 Score=171.42 Aligned_cols=159 Identities=33% Similarity=0.719 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||++++++..+.....++.+.+............+.+.+||+||+..+......++.++|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988887777788887777777777777889999999999888888888999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchh--hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
|++++.+++.+..|+..+.... .+.|+++++||+|+.... .......+....+.+++++|++++.|+++++..|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999998888988877644 579999999999986532 2334455666677899999999999999999999987
Q ss_pred Hh
Q psy125 167 LI 168 (385)
Q Consensus 167 l~ 168 (385)
+.
T Consensus 161 ~~ 162 (164)
T smart00175 161 IL 162 (164)
T ss_pred Hh
Confidence 64
No 101
>PLN03108 Rab family protein; Provisional
Probab=99.92 E-value=2.6e-23 Score=178.44 Aligned_cols=162 Identities=30% Similarity=0.556 Sum_probs=138.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+|+|++|||||||+++|+.+.+...+.++.+.++...........+.+.+|||+|.+.+..++..++.++|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999888888888888888877777777888899999999999888888889999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|||++++.+++.+..|+..+... ..+.|+++++||+|+..... ..+...+....+.+++++|++++.|+.+.|.+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999888888776653 25789999999999865432 3445566677778999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 165 ~~~~~ 169 (210)
T PLN03108 165 AKIYK 169 (210)
T ss_pred HHHHH
Confidence 88754
No 102
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.92 E-value=3.6e-23 Score=175.50 Aligned_cols=161 Identities=21% Similarity=0.315 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhhcc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYIQ 81 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~~~ 81 (385)
+||+|+|.+|||||||+++++++.+...+.++.+..........++..+.+.+|||||...+... ....+.+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999998888777788776555555566777789999999997543211 2334689
Q ss_pred CcEEEEEEeCCChhhhhcHHHHHHHHHHh----cCCCCEEEEEeCCCCcchhh--hHHHHHHHH-hcCCeEEEEcCCCCC
Q psy125 82 GQCAIIMFDVTSRITYKNVPNWHRDLVRV----CENIPIVLCGNKVDIKDRKV--KAKSIVFHR-KKNLQYYDISAKSNY 154 (385)
Q Consensus 82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~----~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~-~~~~~~~~~Sa~~~~ 154 (385)
+|++|+|||++++.+++.+..|+..+... ..+.|+++|+||+|+...+. ......+.. ..+.+++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 99999999999999999988888877664 35789999999999955332 222333332 456789999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q psy125 155 NFEKPFLWLARKLIGD 170 (385)
Q Consensus 155 gi~~l~~~i~~~l~~~ 170 (385)
|++++|..+++.+...
T Consensus 161 ~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 161 HILLLFKELLISATTR 176 (198)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999887654
No 103
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.92 E-value=3.4e-24 Score=181.33 Aligned_cols=116 Identities=34% Similarity=0.523 Sum_probs=107.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+|++++|..+||||+|+.+|..+.|...+.+|+|..+. ..+.+++..+.+.||||+|+++|+.+++.|++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 489999999999999999999999999999999986654 4567788889999999999999999999999999999999
Q ss_pred EeCCChhhhhh-------------------------------------------------------------hheecccc
Q psy125 304 FDVTSRITYKN-------------------------------------------------------------YYDISAKS 322 (385)
Q Consensus 304 ~d~~~~~s~~~-------------------------------------------------------------~~e~Sak~ 322 (385)
||++++.||++ |+||||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 99999999988 88999999
Q ss_pred CCCchHHHHHHHHHHhcC
Q psy125 323 NYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 323 ~~~v~~~f~~l~~~i~~~ 340 (385)
|.||+++|.++++.+...
T Consensus 162 g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 162 QDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999998764
No 104
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.91 E-value=2.8e-23 Score=178.06 Aligned_cols=155 Identities=27% Similarity=0.488 Sum_probs=125.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|.+|||||||+++|+.+.+.. +.++.|...... ..+.+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~----~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK----QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE----EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999888764 466766554333 235688999999999999988899999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcc-------------------hhh--hHHHHHHHHhcC-----
Q psy125 90 DVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKD-------------------RKV--KAKSIVFHRKKN----- 142 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~-------------------~~~--~~~~~~~~~~~~----- 142 (385)
|++++.+|+.+..|+..+... ..+.|+++|+||+|+.. .+. ..+...++...+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999988777666553 35689999999999864 111 344555666544
Q ss_pred ---------CeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 143 ---------LQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 143 ---------~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
.+++++||++|.|++++|..+++.+..
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999988754
No 105
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=2.6e-23 Score=190.13 Aligned_cols=197 Identities=15% Similarity=0.166 Sum_probs=148.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc-ccch-------hhh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-GGLR-------DGY 78 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~-~~~~-------~~~ 78 (385)
.+.++|+++|++|||||||+|+|++..+ ..+++.+++|+.........++..+.+|||||.... ..+. ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKL-SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCce-eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 3457999999999999999999876554 456677788877665555556678899999998432 2221 124
Q ss_pred hccCcEEEEEEeCCChhhhhcHHH-HHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcC--CeEEEEcCCCCCC
Q psy125 79 YIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN--LQYYDISAKSNYN 155 (385)
Q Consensus 79 ~~~~d~illV~d~~~~~~~~~~~~-~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~g 155 (385)
+.++|++++|+|..+ ++..... ++..+.. .+.|.++|+||+|+... ...+...++.... ..++++||+++.|
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRS--LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 678999999999765 3444333 3444332 35678899999998643 2233334443333 5789999999999
Q ss_pred hHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhh
Q psy125 156 FEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMA 217 (385)
Q Consensus 156 i~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 217 (385)
+++++.+|...+... |++++++..+|...+..+.+.+|+.+..++.+|.||...
T Consensus 204 v~eL~~~L~~~l~~~--------~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~ 257 (339)
T PRK15494 204 IDGLLEYITSKAKIS--------PWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLT 257 (339)
T ss_pred HHHHHHHHHHhCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEE
Confidence 999999999987654 679999999999999999999999999999999997654
No 106
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.91 E-value=3.5e-23 Score=172.88 Aligned_cols=157 Identities=28% Similarity=0.492 Sum_probs=129.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeC
Q psy125 12 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 91 (385)
Q Consensus 12 i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~ 91 (385)
|+++|++|||||||+++++.+.+...+.++.+..+. .....+...+.+.+|||+|++.+..++..++.++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 589999999999999999998888777777665543 3445667788999999999998888888899999999999999
Q ss_pred CChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEEcCCCCCC
Q psy125 92 TSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDISAKSNYN 155 (385)
Q Consensus 92 ~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~Sa~~~~g 155 (385)
+++.+++.+. .|+..+.....+.|+++|+||+|+..... ..+...+....+. .++++||+++.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999875 58888877667899999999999864221 2233446666665 899999999999
Q ss_pred hHHHHHHHHHHHhc
Q psy125 156 FEKPFLWLARKLIG 169 (385)
Q Consensus 156 i~~l~~~i~~~l~~ 169 (385)
+++++..+++.+.+
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988643
No 107
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=3.8e-24 Score=184.36 Aligned_cols=117 Identities=22% Similarity=0.341 Sum_probs=108.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|+++||||+|+.+|..+.|...|.+|++..+. ..+.+++..+.+.||||+|+++|..+++.||+++|++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 4689999999999999999999999999999999987764 457788899999999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125 303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK 321 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak 321 (385)
|||++++.||++ |+|||||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAk 170 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAF 170 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCC
Confidence 999999999985 7899999
Q ss_pred cCC-CchHHHHHHHHHHhcC
Q psy125 322 SNY-NFEKPFLWLARKLIGD 340 (385)
Q Consensus 322 ~~~-~v~~~f~~l~~~i~~~ 340 (385)
+|. ||+++|..+++.+++.
T Consensus 171 tg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 171 TSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred cCCcCHHHHHHHHHHHHHHh
Confidence 998 8999999999998764
No 108
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=4.1e-23 Score=171.31 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=131.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCC-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
.+.+||+++|.+|||||||+++++++.+. ..+.++.+..+........+..+.+.+||++|.+.+..++..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 45789999999999999999999998887 77888888777666666677778999999999998888888889999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~ 162 (385)
++|+|++++.+++.+..|+..+.. ..+.|+++|+||+|+..... ..+...+....+. .++++||+++.|+.+++..
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999888777776532 24789999999999864332 1223345555554 4689999999999999999
Q ss_pred HHHHHh
Q psy125 163 LARKLI 168 (385)
Q Consensus 163 i~~~l~ 168 (385)
+++.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 999875
No 109
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.91 E-value=8e-23 Score=168.42 Aligned_cols=157 Identities=33% Similarity=0.628 Sum_probs=133.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++++.+.....++.+.++...........+.+.+|||||++.+......+++++|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988887778888888877776777777899999999999888888888899999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
|++++.+++.+..|+..+.... .+.|+++++||+|+..... ..+...+......+++++|++++.|+++++..+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999998888888776643 5788999999999873332 334555666778899999999999999999988765
No 110
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.91 E-value=7.1e-24 Score=177.65 Aligned_cols=117 Identities=28% Similarity=0.451 Sum_probs=110.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|..|||||+|+.+|+.+.|...|.+|+|.++..+.+.+++..+.+.||||+|+++|..+++.+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999999999999998888888888899999999999999999999999999999999
Q ss_pred eCCChhhhhh----------------------------------------------------hheeccccCCCchHHHHH
Q psy125 305 DVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 305 d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|++++.||++ |++|||++|.||+++|.+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~ 160 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKI 160 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999988 799999999999999999
Q ss_pred HHHHHhcCC
Q psy125 333 LARKLIGDP 341 (385)
Q Consensus 333 l~~~i~~~~ 341 (385)
+++.+..-+
T Consensus 161 l~~~l~~~~ 169 (182)
T cd04128 161 VLAKAFDLP 169 (182)
T ss_pred HHHHHHhcC
Confidence 999997644
No 111
>PLN03118 Rab family protein; Provisional
Probab=99.91 E-value=1.2e-22 Score=174.90 Aligned_cols=165 Identities=29% Similarity=0.543 Sum_probs=134.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
...+||+++|++|||||||+++|+++.+ ..+.++.|.++.......+...+.+.+|||||++.+..++..+++.+|++|
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 3468999999999999999999887765 567788888777777777777899999999999999888899999999999
Q ss_pred EEEeCCChhhhhcHHH-HHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125 87 IMFDVTSRITYKNVPN-WHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~-~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (385)
+|||++++.+++.+.. |...+... ..+.|+++|+||.|+..... ..+...+....+..++++||+++.|+++++.
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999988765 54444332 24578999999999864332 2334455666677899999999999999999
Q ss_pred HHHHHHhcCCC
Q psy125 162 WLARKLIGDPN 172 (385)
Q Consensus 162 ~i~~~l~~~~~ 172 (385)
.|++.+...+.
T Consensus 171 ~l~~~~~~~~~ 181 (211)
T PLN03118 171 ELALKIMEVPS 181 (211)
T ss_pred HHHHHHHhhhh
Confidence 99999876543
No 112
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=8.4e-24 Score=176.47 Aligned_cols=113 Identities=24% Similarity=0.390 Sum_probs=105.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|++|||||+|+++|..+.|...+.+|++..+ .+.+.+++..+.+.||||+|+++|..+++.|++++|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 6999999999999999999999999999999998665 456778889999999999999999999999999999999999
Q ss_pred eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125 305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~ 323 (385)
|++++.||++ |+||||++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~ 160 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS 160 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence 9999999987 799999999
Q ss_pred CC-chHHHHHHHHHHh
Q psy125 324 YN-FEKPFLWLARKLI 338 (385)
Q Consensus 324 ~~-v~~~f~~l~~~i~ 338 (385)
.| |+++|..+++..+
T Consensus 161 ~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 161 EKSVRDIFHVATMACL 176 (178)
T ss_pred CcCHHHHHHHHHHHHh
Confidence 95 9999999999655
No 113
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=6.6e-23 Score=173.23 Aligned_cols=156 Identities=22% Similarity=0.412 Sum_probs=122.2
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHhcCC-----CCCccccccee-eeEEEE--------EEeCCeeEEEEEEeCCCcccccc
Q psy125 9 SFKCVLVGDGGTGKTTFVK-RHLTGE-----FEKKYVATLGV-EVHPLV--------FHTNRGAIRFNVWDTAGQEKFGG 73 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin-~ll~~~-----~~~~~~~~~g~-t~~~~~--------~~~~~~~~~~~i~Dt~g~~~~~~ 73 (385)
.+||+++|..|||||||+. ++..+. +...+.|+.|. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 544432 34556677752 222211 14567789999999999875 2
Q ss_pred chhhhhccCcEEEEEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcch--------------------h-hh
Q psy125 74 LRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR--------------------K-VK 131 (385)
Q Consensus 74 ~~~~~~~~~d~illV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~--------------------~-~~ 131 (385)
....+++++|++|+|||++++.+++++. .|+..+.....+.|+++|+||+|+... . ..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4456889999999999999999999886 588888766678899999999998531 1 14
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 132 AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 132 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
.+...+++..+.+++++||+++.|++++|..++++
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 45677888888899999999999999999998874
No 114
>KOG1707|consensus
Probab=99.91 E-value=7.5e-23 Score=188.32 Aligned_cols=182 Identities=19% Similarity=0.254 Sum_probs=137.6
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc
Q psy125 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI 80 (385)
Q Consensus 1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~ 80 (385)
|+..+..+.+||+|+|+.|+|||||+-.++...+.+.+.+......-+ ....-..+...++||+..+..+......++
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHh
Confidence 677888899999999999999999999999998888877655422222 222334566899999876655556677889
Q ss_pred cCcEEEEEEeCCChhhhhcHH-HHHHHHHHhc---CCCCEEEEEeCCCCcchhhh--HH-HHH-H-HHhcCCeEEEEcCC
Q psy125 81 QGQCAIIMFDVTSRITYKNVP-NWHRDLVRVC---ENIPIVLCGNKVDIKDRKVK--AK-SIV-F-HRKKNLQYYDISAK 151 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~-~~~~~l~~~~---~~~~~ilv~nK~Dl~~~~~~--~~-~~~-~-~~~~~~~~~~~Sa~ 151 (385)
++|++.+||+++++.+.+.+. .|+..+++.. .+.|+|+|+||+|+...... .. ..- + .......+++|||+
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~ 158 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL 158 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence 999999999999999988766 5999888865 68999999999998654332 11 111 1 11122368899999
Q ss_pred CCCChHHHHHHHHHHHhcCCCcccccCCCCCCC
Q psy125 152 SNYNFEKPFLWLARKLIGDPNLEFVAMPALLPP 184 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep 184 (385)
+..++.++|....+++.+....++...+.-..|
T Consensus 159 ~~~n~~e~fYyaqKaVihPt~PLyda~~qelkp 191 (625)
T KOG1707|consen 159 TLANVSELFYYAQKAVIHPTSPLYDAEEQELKP 191 (625)
T ss_pred hhhhhHhhhhhhhheeeccCccccccccccccH
Confidence 999999999999999988777776554444444
No 115
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.91 E-value=1e-22 Score=169.85 Aligned_cols=155 Identities=26% Similarity=0.473 Sum_probs=126.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|+|||||+++++++.+...+.++... ........++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD-NFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 58999999999999999999998888877777533 33344566777899999999999988888888999999999999
Q ss_pred eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcCC-eEEEEcCCCC
Q psy125 90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKNL-QYYDISAKSN 153 (385)
Q Consensus 90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~Sa~~~ 153 (385)
|++++.+++.+. .|+..+.....+.|+++++||.|+.... ...+...++...+. .++++||+++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 999999998875 5887776655679999999999985421 12334556666666 8999999999
Q ss_pred CChHHHHHHHHH
Q psy125 154 YNFEKPFLWLAR 165 (385)
Q Consensus 154 ~gi~~l~~~i~~ 165 (385)
.|+++++..++.
T Consensus 160 ~~v~~lf~~~~~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHh
Confidence 999999988764
No 116
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.91 E-value=8.2e-23 Score=167.24 Aligned_cols=150 Identities=22% Similarity=0.330 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++.+.+...+.++.+ .+ ......++..+.+.+|||+|++. ..++.++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999998887766555433 22 24456677788899999999964 34668899999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcc---hhh-hHHHHHHHHhc-CCeEEEEcCCCCCChHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKD---RKV-KAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~---~~~-~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
|++++.+|+++..|+..+.... .+.|+++|+||.|+.. +.. ..+..++.+.. ...++++||+++.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999989998887653 5689999999999742 112 23344565554 479999999999999999999
Q ss_pred HHHH
Q psy125 163 LARK 166 (385)
Q Consensus 163 i~~~ 166 (385)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8864
No 117
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=1e-22 Score=178.04 Aligned_cols=157 Identities=26% Similarity=0.504 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|.+|||||||+++|+.+.+...+.++.+ +.....+...+..+.+.+|||+|.+.+..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988887778776 334455667777899999999999888877778889999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHh----------cCCCCEEEEEeCCCCcchh--hhHHHHHHHHh-cCCeEEEEcCCCCCCh
Q psy125 90 DVTSRITYKNVPNWHRDLVRV----------CENIPIVLCGNKVDIKDRK--VKAKSIVFHRK-KNLQYYDISAKSNYNF 156 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~----------~~~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~-~~~~~~~~Sa~~~~gi 156 (385)
|+++..+|+.+..|+..+... ..+.|+++++||+|+.... ...+..++... ....++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999988888877642 2478999999999986422 22333334332 3568999999999999
Q ss_pred HHHHHHHHHHH
Q psy125 157 EKPFLWLARKL 167 (385)
Q Consensus 157 ~~l~~~i~~~l 167 (385)
++++..|+..+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 118
>KOG0091|consensus
Probab=99.91 E-value=1.4e-23 Score=161.49 Aligned_cols=162 Identities=24% Similarity=0.528 Sum_probs=141.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
..+|..+||++-+|||+|++.|..+++.....|+.|+++....+... +..+++.+|||.|+++++++...|+++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 45899999999999999999999999999999999999877766654 45799999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc--CCCCE-EEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC--ENIPI-VLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~-ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (385)
+|||++++++|+.+..|..+..... +.+++ .+|++|+|+...+. .++...++...+..++++|++++.|+++.+.
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD 166 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence 9999999999999999998765533 34444 58899999976554 5667788999999999999999999999999
Q ss_pred HHHHHHhc
Q psy125 162 WLARKLIG 169 (385)
Q Consensus 162 ~i~~~l~~ 169 (385)
.|++.+..
T Consensus 167 mlaqeIf~ 174 (213)
T KOG0091|consen 167 MLAQEIFQ 174 (213)
T ss_pred HHHHHHHH
Confidence 99887643
No 119
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=4.7e-23 Score=170.71 Aligned_cols=156 Identities=21% Similarity=0.315 Sum_probs=120.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
|.++.+||+++|++|||||||++++..+.+. .+.++.|.+..... ...+.+.+|||+|++.+...+..++.++|+
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ 79 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 79 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 4457899999999999999999998776654 45677776654322 256899999999999888888889999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHh-----cCCeEEEEcCCCCCChH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----KNLQYYDISAKSNYNFE 157 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 157 (385)
+++|+|++++.++.....|+..+.. ...+.|+++++||+|+.......+...+... ....++++||++|.|++
T Consensus 80 ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 80 LIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 9999999999888877777666554 2357899999999998643222333332211 22368899999999999
Q ss_pred HHHHHHHH
Q psy125 158 KPFLWLAR 165 (385)
Q Consensus 158 ~l~~~i~~ 165 (385)
+.+.+|++
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99998864
No 120
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.91 E-value=1e-23 Score=174.63 Aligned_cols=115 Identities=34% Similarity=0.635 Sum_probs=109.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|.+|||||++++++..+.|...+.+|+|.++....+.+++..+.+.||||||+++|..++..++++++++|+||
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 79999999999999999999999999999999998888888888888899999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|++++.||++ |+||||++|.||+++|.+++++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999987 8999999999999999999998
Q ss_pred Hhc
Q psy125 337 LIG 339 (385)
Q Consensus 337 i~~ 339 (385)
+.+
T Consensus 163 ~~~ 165 (166)
T cd04122 163 IYQ 165 (166)
T ss_pred Hhh
Confidence 865
No 121
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.91 E-value=3.1e-22 Score=172.92 Aligned_cols=159 Identities=21% Similarity=0.317 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc-cCcEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI-QGQCAII 87 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~-~~d~ill 87 (385)
+||+++|++|||||||+++|+.+.+. ..+.++.+.+.......++...+.+.+|||+|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999998888776 56666665455556667777889999999999972 22344556 8999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...+....+..++++||+++.|+++++..+
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999998888888776642 5789999999999865432 233345566667789999999999999999999
Q ss_pred HHHHhcC
Q psy125 164 ARKLIGD 170 (385)
Q Consensus 164 ~~~l~~~ 170 (385)
++.+...
T Consensus 159 ~~~~~~~ 165 (221)
T cd04148 159 VRQIRLR 165 (221)
T ss_pred HHHHHhh
Confidence 9988643
No 122
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.91 E-value=2.1e-23 Score=172.51 Aligned_cols=120 Identities=93% Similarity=1.515 Sum_probs=111.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|++|||||+++++++.+.+...+.+|++.++....+..++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999998899999998888887777888899999999999999999999999999999999
Q ss_pred eCCChhhhhh---------------------------------------------hheeccccCCCchHHHHHHHHHHhc
Q psy125 305 DVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 305 d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~ 339 (385)
|++++.||++ |+||||++|.||+++|.+|++++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 9999999976 8999999999999999999999988
Q ss_pred CCCcc
Q psy125 340 DPNLE 344 (385)
Q Consensus 340 ~~~~~ 344 (385)
.+..+
T Consensus 161 ~~~~~ 165 (166)
T cd00877 161 NPNLE 165 (166)
T ss_pred ccccc
Confidence 76654
No 123
>KOG0088|consensus
Probab=99.90 E-value=6.6e-24 Score=162.39 Aligned_cols=163 Identities=29% Similarity=0.528 Sum_probs=144.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
-.+||+++|..-||||||+-+++.++|......+....+..+.+.+......+.||||.|+++|..+-.-|+++.+++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 46899999999999999999999999998888887777777777777788999999999999999999999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|||++++.+|+.+..|..+++.... .+.+++|+||+|+..++. .++...+++.-+..++++||+.+.|+.++|..+.
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence 9999999999999999999988554 467889999999977554 5566778888899999999999999999999998
Q ss_pred HHHhcC
Q psy125 165 RKLIGD 170 (385)
Q Consensus 165 ~~l~~~ 170 (385)
..+.+.
T Consensus 172 ~~MiE~ 177 (218)
T KOG0088|consen 172 AKMIEH 177 (218)
T ss_pred HHHHHH
Confidence 877654
No 124
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.90 E-value=2e-22 Score=167.24 Aligned_cols=158 Identities=25% Similarity=0.525 Sum_probs=130.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+||+++|++|||||||++++..+.+...+.++.+... ..........+.+.+|||||++.+..++..++.+++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 47999999999999999999998888777777776443 34455667789999999999999999999999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcC-CeEEEEcCCCCCChHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~i 163 (385)
||++++.+++.+..|...+... ..+.|+++++||.|+...+. ..+...+.+..+ .+++++||+++.|+.+++.++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 9999999999888888777652 34789999999999865332 223334445555 689999999999999999999
Q ss_pred HHHH
Q psy125 164 ARKL 167 (385)
Q Consensus 164 ~~~l 167 (385)
++.+
T Consensus 160 ~~~~ 163 (168)
T cd04177 160 VRQI 163 (168)
T ss_pred HHHH
Confidence 8765
No 125
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=7.3e-23 Score=176.74 Aligned_cols=164 Identities=76% Similarity=1.278 Sum_probs=153.1
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+|++++|++||||||++++++.+.+...+.+|++.++....+..+++.+.+.+|||+|+++|..++..|+++++++|
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 35689999999999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhh---------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 302 IMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 302 lv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
+|||++++.||++ |+++||++|.||+++|.+|++.
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~ 166 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARR 166 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999854 7899999999999999999999
Q ss_pred HhcCCCcccccCCCCCCCccccChhhhhHHHHHHHHhhccCCCCCCCCC
Q psy125 337 LIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 385 (385)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (385)
+..++.......|...+....++....++..+-+.+...-+.||++++|
T Consensus 167 l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (215)
T PTZ00132 167 LTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANVPLPDDDDDL 215 (215)
T ss_pred HhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhhCCCCCCcCCC
Confidence 9999999999999988888999999999999999999999999999875
No 126
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.90 E-value=1.4e-23 Score=174.61 Aligned_cols=116 Identities=25% Similarity=0.438 Sum_probs=106.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|.+|||||+|+.+|..+.|...+.+|.+..+ ...+.+++..+.+.||||+|+++|..++..|++++|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999999989999987554 45567788889999999999999999999999999999999
Q ss_pred EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
||++++.||++ |+||||++|.||+++|.+|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999998 89999999999999999999
Q ss_pred HHHhcC
Q psy125 335 RKLIGD 340 (385)
Q Consensus 335 ~~i~~~ 340 (385)
+++.++
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 998763
No 127
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=1.4e-23 Score=179.30 Aligned_cols=117 Identities=37% Similarity=0.704 Sum_probs=109.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
+||+++|.+|||||+|+++|+.+.|...+.+|+|.++....+.++ +..+.+.+|||||+++|..++..|+++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999999999999998888888887 7788999999999999999999999999999999
Q ss_pred EeCCChhhhhh-----------------------------------------------------hheeccccCCCchHHH
Q psy125 304 FDVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 304 ~d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
||++++.||++ |+||||++|.||+++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999875 8999999999999999
Q ss_pred HHHHHHHhcCC
Q psy125 331 LWLARKLIGDP 341 (385)
Q Consensus 331 ~~l~~~i~~~~ 341 (385)
.+|++.+....
T Consensus 161 ~~l~~~l~~~~ 171 (201)
T cd04107 161 RFLVKNILAND 171 (201)
T ss_pred HHHHHHHHHhc
Confidence 99999998754
No 128
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=9.9e-23 Score=170.66 Aligned_cols=159 Identities=21% Similarity=0.301 Sum_probs=122.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|..|||||||++++..+.+. .+.|+.|.+... .+...+.+.+||+||++.++.++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~----~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999998776664 456777765432 2335689999999999988888999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcC-----CeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN-----LQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 159 (385)
+|+|++++.++.....++..+.. ...+.|+++++||+|+.......+......... ..++++||++|.|+++.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence 99999999988877666665543 235789999999999875443333222221111 24568999999999999
Q ss_pred HHHHHHHHhcC
Q psy125 160 FLWLARKLIGD 170 (385)
Q Consensus 160 ~~~i~~~l~~~ 170 (385)
+.+|+..+..+
T Consensus 170 ~~~l~~~~~~~ 180 (181)
T PLN00223 170 LDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHhhc
Confidence 99999887543
No 129
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.90 E-value=1.1e-22 Score=168.90 Aligned_cols=158 Identities=22% Similarity=0.368 Sum_probs=122.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
||+++|.+|||||||++++.++.+. .+.++.|.... ......+.+.+|||||+..+...+..++.++|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~----~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE----TVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE----EEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999998877554 35666664443 223357899999999999888888889999999999999
Q ss_pred CCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHhc------CCeEEEEcCCCCCChHHHHHH
Q psy125 91 VTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRKK------NLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
++++.++.++..|+..+... ..+.|+++++||+|+.......+...+.... ...++++||+++.|++++|.+
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 99999998888888777642 2458999999999986543333333333221 126778999999999999999
Q ss_pred HHHHHhcCCCc
Q psy125 163 LARKLIGDPNL 173 (385)
Q Consensus 163 i~~~l~~~~~~ 173 (385)
|++.+...+.+
T Consensus 156 l~~~~~~~~~~ 166 (169)
T cd04158 156 LSRQLVAAGVL 166 (169)
T ss_pred HHHHHhhcccc
Confidence 99988776443
No 130
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.90 E-value=2.6e-22 Score=167.58 Aligned_cols=157 Identities=25% Similarity=0.421 Sum_probs=127.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|+|||||+++++.+.+...+.++.+..... ........+.+.+|||+|...+...+..++..+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 589999999999999999999988877777776544332 4556667788999999999988888888999999999999
Q ss_pred eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEEcCCCC
Q psy125 90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDISAKSN 153 (385)
Q Consensus 90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~Sa~~~ 153 (385)
|++++.+++.+. .|+..+.....+.|+++++||+|+.+... ..+...+.+..+. .++++||+++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998875 57777765567899999999999854321 1233445555554 7999999999
Q ss_pred CChHHHHHHHHHHH
Q psy125 154 YNFEKPFLWLARKL 167 (385)
Q Consensus 154 ~gi~~l~~~i~~~l 167 (385)
.|++++|..++..+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998875
No 131
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.90 E-value=3e-22 Score=165.10 Aligned_cols=158 Identities=31% Similarity=0.587 Sum_probs=130.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|+|||||+++++.+.+.....++.+.+............+.+.+||++|++.+..++..++.++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988776666666665655555666677789999999999888888888889999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
|+++..+++.+..|+..+..... +.|+++++||+|+..... ..+...+....+..++++|++++.|+++++.++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999888888888776433 689999999999874332 334445566677889999999999999999999886
Q ss_pred H
Q psy125 167 L 167 (385)
Q Consensus 167 l 167 (385)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 132
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.90 E-value=2.1e-22 Score=166.62 Aligned_cols=156 Identities=20% Similarity=0.348 Sum_probs=124.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc-cccchhhhhccCcEEEEEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~-~~~~~~~~~~~~d~illV~ 89 (385)
||+++|++|||||||+++++.+.+...+.++.+... ......++..+.+.+||+||... .......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998777666666654333 34456677888999999999885 3345667889999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHh---cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCC-CChHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSN-YNFEKPFLWL 163 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~---~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~l~~~i 163 (385)
|++++.+++.+..|+..+... ..+.|+++|+||+|+..... ..+...+....+.+++++|++++ .|++++|..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 999999999888888777664 24799999999999854322 33445566666789999999999 4999999999
Q ss_pred HHHH
Q psy125 164 ARKL 167 (385)
Q Consensus 164 ~~~l 167 (385)
++.+
T Consensus 160 ~~~~ 163 (165)
T cd04146 160 CREV 163 (165)
T ss_pred HHHH
Confidence 9865
No 133
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.90 E-value=2.6e-23 Score=178.32 Aligned_cols=117 Identities=25% Similarity=0.428 Sum_probs=108.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||+|+.+|..+.|...|.||++..+. ..+.+++..+.+.||||+|++.|..+++.+|+++|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 69999999999999999999999999999999986664 56778889999999999999999999999999999999999
Q ss_pred eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125 305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~ 323 (385)
|++++.||++ |+||||+++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 9999999988 899999999
Q ss_pred CC-chHHHHHHHHHHhcCCC
Q psy125 324 YN-FEKPFLWLARKLIGDPN 342 (385)
Q Consensus 324 ~~-v~~~f~~l~~~i~~~~~ 342 (385)
.| |+++|..+++..+.+.+
T Consensus 161 ~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 161 ERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CcCHHHHHHHHHHHHHhccC
Confidence 85 99999999998877554
No 134
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.90 E-value=2.9e-22 Score=164.30 Aligned_cols=155 Identities=35% Similarity=0.731 Sum_probs=134.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++++.+.....++.+.++...........+.+.+||+||...+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888888998888888888888899999999999888788888999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCc--chhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIK--DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|++++.++..+..|+..+.... ...|+++++||+|+. ......+...+......+++++|++++.|+++++.+|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999988988888888877654 578999999999985 23334455566666788999999999999999998875
No 135
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.90 E-value=2.3e-22 Score=167.73 Aligned_cols=156 Identities=24% Similarity=0.344 Sum_probs=119.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
...+||+++|++|||||||++++..+.+. .+.++.|...... ....+.+.+|||+|+..+..++..++.++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~----~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETV----TYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEE----EECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45799999999999999999998777664 4567776554322 225689999999999998888899999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 159 (385)
+|+|++++.+++....|+..+.. ...+.|+++++||+|+.......+...... .....++++||++|.|++++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 99999999988887777766654 235789999999999865332222222111 12235678999999999999
Q ss_pred HHHHHHHH
Q psy125 160 FLWLARKL 167 (385)
Q Consensus 160 ~~~i~~~l 167 (385)
+.+|+..+
T Consensus 166 ~~~l~~~~ 173 (175)
T smart00177 166 LTWLSNNL 173 (175)
T ss_pred HHHHHHHh
Confidence 99998764
No 136
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.90 E-value=4.8e-22 Score=166.12 Aligned_cols=157 Identities=28% Similarity=0.494 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
.||+++|++|||||||+++++.+.+...+.++.+..... ....+...+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 589999999999999999999988887777877655433 3456677889999999999988877777889999999999
Q ss_pred eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcC-CeEEEEcCCCC
Q psy125 90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKN-LQYYDISAKSN 153 (385)
Q Consensus 90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~Sa~~~ 153 (385)
|++++.+++.+. .|+..+.....+.|+++++||+|+..... ......+....+ ..++++||+++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 999999988875 47777766557899999999999854321 122233444433 48999999999
Q ss_pred CChHHHHHHHHHHH
Q psy125 154 YNFEKPFLWLARKL 167 (385)
Q Consensus 154 ~gi~~l~~~i~~~l 167 (385)
.|++++|.+|++..
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 137
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=7.4e-22 Score=164.00 Aligned_cols=160 Identities=33% Similarity=0.617 Sum_probs=131.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..++|+++|++|||||||++++..+.+.....++.+..........+...+.+.+||++|+..+......++.++|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999988777777777777766666666777778899999999998888888889999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh-h-HHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|+|+++..+++.+..|+..+.... .+.|+++++||+|+..... . .....+.......++++|++++.|+.+++..|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 999999999988888887776543 3688999999999864332 2 223345555567899999999999999999998
Q ss_pred HHH
Q psy125 165 RKL 167 (385)
Q Consensus 165 ~~l 167 (385)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 764
No 138
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.90 E-value=2.3e-22 Score=165.13 Aligned_cols=151 Identities=23% Similarity=0.337 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|.+|||||||++++..+.+. .+.|+.|..... . ....+.+.+||++|++.+...+..+++++|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~--~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEE--E--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999998777775 466777765432 2 225688999999999988888889999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
|++++.++.....++..+.. ...+.|+++++||+|+.......+...... .....++++||++|.|+++++.+
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence 99999888887776666543 224689999999999864322222221111 12235779999999999999998
Q ss_pred HHH
Q psy125 163 LAR 165 (385)
Q Consensus 163 i~~ 165 (385)
|+.
T Consensus 156 l~~ 158 (159)
T cd04150 156 LSN 158 (159)
T ss_pred Hhc
Confidence 864
No 139
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.89 E-value=4.8e-23 Score=169.64 Aligned_cols=112 Identities=30% Similarity=0.635 Sum_probs=105.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|++|||||+++++++.+.|...+.+|+|.++....+.+++..+.+.||||+|++++..++..|++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999999999999998888888888888889999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|++++.||++ |+||||++|.||+++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999988 8999999999999999999874
No 140
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.89 E-value=7.2e-23 Score=170.71 Aligned_cols=112 Identities=29% Similarity=0.431 Sum_probs=103.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|.+|||||+|+.+|..+.|...|.||++..+. +.+.+++..+.+.||||+|+++|..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 68999999999999999999999999999999986664 45667788899999999999999999999999999999999
Q ss_pred eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125 305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~ 323 (385)
|++++.||++ |+||||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 9999999987 899999999
Q ss_pred CCchHHHHHHHHHH
Q psy125 324 YNFEKPFLWLARKL 337 (385)
Q Consensus 324 ~~v~~~f~~l~~~i 337 (385)
.||+++|..+++..
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999853
No 141
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.89 E-value=7.8e-22 Score=162.94 Aligned_cols=158 Identities=28% Similarity=0.542 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++.+.+...+.++.+.... .....+.+.+.+.+||+||+..+...+..++..++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE-EEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999988877666666554433 34566778899999999999988888888999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcch--hhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDR--KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
|++++.++..+..|...+... ..++|+++|+||+|+... ........+....+.+++++|++++.|+++++..+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 999999998888888777764 357999999999998652 2233344455566789999999999999999999988
Q ss_pred HHh
Q psy125 166 KLI 168 (385)
Q Consensus 166 ~l~ 168 (385)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 142
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.89 E-value=2.7e-22 Score=167.30 Aligned_cols=155 Identities=18% Similarity=0.306 Sum_probs=119.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
+.+..+||+++|++|||||||+++|.+. ....+.++.|....... . +.+.+.+|||||++.++..+..++.++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~~~--~--~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKTLE--Y--EGYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 3456789999999999999999997765 44556677764433322 2 35889999999999887788889999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFE 157 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 157 (385)
+++|+|++++.++.....|+..+.. ...+.|+++++||+|+.......+...+.. ....+++++||++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 9999999999888877777766654 235789999999999865433333333332 234589999999999999
Q ss_pred HHHHHHH
Q psy125 158 KPFLWLA 164 (385)
Q Consensus 158 ~l~~~i~ 164 (385)
+++.+++
T Consensus 165 ~l~~~l~ 171 (173)
T cd04154 165 QGIDWLV 171 (173)
T ss_pred HHHHHHh
Confidence 9998875
No 143
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=4.6e-22 Score=166.88 Aligned_cols=158 Identities=19% Similarity=0.315 Sum_probs=119.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||++++..+.+.. +.++.|.+... .+...+.+.+|||+|++.++..+..++.++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~----~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET----VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE----EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456899999999999999999987776654 56677765432 2235689999999999988888899999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 159 (385)
+|+|++++.++.....++..+.. ...+.|+++++||.|+.......+...... .....++++||+++.|++++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 99999999888877666665543 224689999999999865322222221111 11224668999999999999
Q ss_pred HHHHHHHHhc
Q psy125 160 FLWLARKLIG 169 (385)
Q Consensus 160 ~~~i~~~l~~ 169 (385)
+.+|++.+..
T Consensus 170 ~~~l~~~i~~ 179 (182)
T PTZ00133 170 LDWLSANIKK 179 (182)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 144
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.89 E-value=1.3e-22 Score=171.39 Aligned_cols=116 Identities=31% Similarity=0.436 Sum_probs=105.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 305 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 305 (385)
||+++|.+|||||+|+++|..+.|...+.+|++..+. ..+.+++..+.+.||||+|+++|..+++.++++++++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 7999999999999999999999999999999876654 456677778899999999999999999999999999999999
Q ss_pred CCChhhhhh-------------------------------------------------------------hheeccccCC
Q psy125 306 VTSRITYKN-------------------------------------------------------------YYDISAKSNY 324 (385)
Q Consensus 306 ~~~~~s~~~-------------------------------------------------------------~~e~Sak~~~ 324 (385)
++++.||++ |+||||++|.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 999999976 7899999999
Q ss_pred CchHHHHHHHHHHhcCCC
Q psy125 325 NFEKPFLWLARKLIGDPN 342 (385)
Q Consensus 325 ~v~~~f~~l~~~i~~~~~ 342 (385)
||+++|.+|++.+.....
T Consensus 161 ~v~e~f~~l~~~~~~~~~ 178 (189)
T cd04134 161 GVNEAFTEAARVALNVRP 178 (189)
T ss_pred CHHHHHHHHHHHHhcccc
Confidence 999999999999986443
No 145
>KOG0097|consensus
Probab=99.89 E-value=1.9e-22 Score=151.44 Aligned_cols=163 Identities=30% Similarity=0.557 Sum_probs=146.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+|..++|+-|+|||+|+..|..+++......++|+.+....+.+.+..+++.+|||.|+++++...+.|++++.++++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|||++.+.....+..|+...... .++..+++++||.|+...+. ..+...++...+..+.++|+++|+++++.|..-+
T Consensus 90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 99999999888888898877652 35667889999999976554 5667789999999999999999999999999888
Q ss_pred HHHhcC
Q psy125 165 RKLIGD 170 (385)
Q Consensus 165 ~~l~~~ 170 (385)
+.+.++
T Consensus 170 kkiyqn 175 (215)
T KOG0097|consen 170 KKIYQN 175 (215)
T ss_pred HHHHHh
Confidence 888764
No 146
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.89 E-value=1e-22 Score=169.68 Aligned_cols=111 Identities=31% Similarity=0.489 Sum_probs=101.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|.+|||||+|+.+|+.+.|...+.+|++.. ....+.+++..+.+.||||+|+++|..+++.+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 689999999999999999999999999999998644 3455677888899999999999999999999999999999999
Q ss_pred eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125 305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~ 323 (385)
|++++.||++ |+||||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 9999999987 589999999
Q ss_pred CCchHHHHHHHHH
Q psy125 324 YNFEKPFLWLARK 336 (385)
Q Consensus 324 ~~v~~~f~~l~~~ 336 (385)
.||+++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999975
No 147
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.89 E-value=5.9e-22 Score=166.56 Aligned_cols=162 Identities=20% Similarity=0.262 Sum_probs=123.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEe-CCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
..+||+++|++|||||||+++++.+.+... .++.|.+........ ++..+.+.+|||+|++.+...+..++.++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 358999999999999999999888776543 566666555444433 446789999999999888888888999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH---h---cCCeEEEEcCCCCCChHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR---K---KNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~---~---~~~~~~~~Sa~~~~gi~~ 158 (385)
+|+|++++.++.....|+..+... ..+.|+++++||+|+.......+...+.. . ....++++||+++.|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 999999998887777777665542 24689999999999864322222222221 1 123578999999999999
Q ss_pred HHHHHHHHHhcC
Q psy125 159 PFLWLARKLIGD 170 (385)
Q Consensus 159 l~~~i~~~l~~~ 170 (385)
++.+|++.+...
T Consensus 161 l~~~l~~~l~~~ 172 (183)
T cd04152 161 GLEKLYEMILKR 172 (183)
T ss_pred HHHHHHHHHHHH
Confidence 999999887554
No 148
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.89 E-value=2e-22 Score=166.26 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=120.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeC
Q psy125 12 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 91 (385)
Q Consensus 12 i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~ 91 (385)
|+++|++|||||||++++..+.+...+.++.|... .....+.+.+.+||++|+..++.++..+++++|++++|+|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 78999999999999999998888777888887643 23445678999999999999988999999999999999999
Q ss_pred CChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHH------HHHHHHhcCCeEEEEcCCC------CCChHHH
Q psy125 92 TSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK------SIVFHRKKNLQYYDISAKS------NYNFEKP 159 (385)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~Sa~~------~~gi~~l 159 (385)
+++.++.....|+..+.....+.|+++|+||.|+........ ...+....+..++++||++ +.|++++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence 999988888788877765447899999999999865433222 2233344566788888887 8999998
Q ss_pred HHHHH
Q psy125 160 FLWLA 164 (385)
Q Consensus 160 ~~~i~ 164 (385)
|..++
T Consensus 158 ~~~~~ 162 (164)
T cd04162 158 LSQLI 162 (164)
T ss_pred HHHHh
Confidence 88765
No 149
>KOG0081|consensus
Probab=99.89 E-value=1.4e-23 Score=160.80 Aligned_cols=162 Identities=33% Similarity=0.620 Sum_probs=139.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC---------CeeEEEEEEeCCCccccccchhhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN---------RGAIRFNVWDTAGQEKFGGLRDGY 78 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~---------~~~~~~~i~Dt~g~~~~~~~~~~~ 78 (385)
.-+|...+|++||||||++.++..+.+......+.|+++..+...+. ...+.+.+|||.|+++++++.-.+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 34688899999999999999999999999999999988766543332 235889999999999999999999
Q ss_pred hccCcEEEEEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCC
Q psy125 79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNY 154 (385)
Q Consensus 79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (385)
++.+-+++++||+++..+|-++..|+..+.- .+++..+++++||+|+.+.+. ..+...++...+.++|++||-++.
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 9999999999999999999999999988765 557888999999999988766 445677899999999999999999
Q ss_pred ChHHHHHHHHHHHhc
Q psy125 155 NFEKPFLWLARKLIG 169 (385)
Q Consensus 155 gi~~l~~~i~~~l~~ 169 (385)
++++..+.+...+++
T Consensus 168 Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 168 NVEKAVELLLDLVMK 182 (219)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999888777776544
No 150
>PTZ00369 Ras-like protein; Provisional
Probab=99.89 E-value=1.2e-22 Score=171.75 Aligned_cols=117 Identities=27% Similarity=0.494 Sum_probs=107.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+|++++|.+|||||+|+++|..+.|...+.+|.+.++ .+.+.+++..+.+.||||||+++|..++..|+++++++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 468999999999999999999999999889999988666 4566778888899999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|||++++.||++ |++|||++|.||+++|.+|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 999999999888 8999999999999999999
Q ss_pred HHHHhcC
Q psy125 334 ARKLIGD 340 (385)
Q Consensus 334 ~~~i~~~ 340 (385)
++.+...
T Consensus 163 ~~~l~~~ 169 (189)
T PTZ00369 163 VREIRKY 169 (189)
T ss_pred HHHHHHH
Confidence 9988653
No 151
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=1.6e-21 Score=161.52 Aligned_cols=158 Identities=18% Similarity=0.325 Sum_probs=119.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|.+|||||||++++..+.+...+..+... . ..........+.+.+|||+|...+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPE-I-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccc-e-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999988876554332221 1 222344567789999999999877666677789999999999
Q ss_pred eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhhh----HHHHHHHH-hcC-CeEEEEcCCCCCChHHHHHH
Q psy125 90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHR-KKN-LQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~----~~~~~~~~-~~~-~~~~~~Sa~~~~gi~~l~~~ 162 (385)
|++++.+++.+. .|+..+.....+.|+++|+||+|+.+.... .....+.. ... ..++++||+++.|+++++..
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 999999998864 577777655568999999999998654331 22222222 222 37999999999999999999
Q ss_pred HHHHHhc
Q psy125 163 LARKLIG 169 (385)
Q Consensus 163 i~~~l~~ 169 (385)
+.+.+.+
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9988754
No 152
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.89 E-value=1.5e-22 Score=167.75 Aligned_cols=116 Identities=31% Similarity=0.647 Sum_probs=109.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|.+|||||+|++++..+.|...+.++.+.++....+..++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 48999999999999999999999999999999999988888888888889999999999999999999999999999999
Q ss_pred EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
||++++.||++ |+||||++|.||+++|.++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999988 799999999999999999999
Q ss_pred HHhc
Q psy125 336 KLIG 339 (385)
Q Consensus 336 ~i~~ 339 (385)
++..
T Consensus 163 ~~~~ 166 (167)
T cd01867 163 DIKK 166 (167)
T ss_pred HHHh
Confidence 9865
No 153
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.88 E-value=1.3e-22 Score=167.41 Aligned_cols=112 Identities=30% Similarity=0.579 Sum_probs=102.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||+|++++..+.|...+.+|.+ +...+.+.+++..+.+.||||||+++|..+++.|++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999888888886 444566777888889999999999999999999999999999999
Q ss_pred eCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 305 DVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 305 d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
|++++.||++ |++|||++|.||+++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999987 799999999999999999998
Q ss_pred HH
Q psy125 336 KL 337 (385)
Q Consensus 336 ~i 337 (385)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 65
No 154
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.88 E-value=2.5e-21 Score=161.14 Aligned_cols=155 Identities=30% Similarity=0.519 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++|+++.+...+.++..... ..........+.+.+||+||++.+......++..+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998887666656554333 333455677889999999999987777778889999999999
Q ss_pred eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh-------------hHHHHHHHHhcCC-eEEEEcCCCCC
Q psy125 90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV-------------KAKSIVFHRKKNL-QYYDISAKSNY 154 (385)
Q Consensus 90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-------------~~~~~~~~~~~~~-~~~~~Sa~~~~ 154 (385)
|++++.++.... .|+..+.....+.|+++|+||+|+..... ......+....+. .++++|++++.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 999988887654 47776666556899999999999865432 2233445555555 89999999999
Q ss_pred ChHHHHHHHHH
Q psy125 155 NFEKPFLWLAR 165 (385)
Q Consensus 155 gi~~l~~~i~~ 165 (385)
|+++++..|++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999998875
No 155
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.88 E-value=3.4e-21 Score=162.56 Aligned_cols=159 Identities=27% Similarity=0.455 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
.||+|+|++|+|||||+++|..+.+...+.++.+..+.. ........+.+.+||++|++.+.......+.+++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT-DCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE-EEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 599999999999999999988787776666655443322 3445666788999999999877766666778999999999
Q ss_pred eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh----------h--hHHHHHHHHhcC-CeEEEEcCCCCCC
Q psy125 90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK----------V--KAKSIVFHRKKN-LQYYDISAKSNYN 155 (385)
Q Consensus 90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~----------~--~~~~~~~~~~~~-~~~~~~Sa~~~~g 155 (385)
++++..+++.+. .|+..+.....+.|+++|+||+|+.... . ......+....+ ..++++||+++.|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 160 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG 160 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence 999999998876 5888887766789999999999984311 0 223444555555 4899999999999
Q ss_pred hHHHHHHHHHHHhc
Q psy125 156 FEKPFLWLARKLIG 169 (385)
Q Consensus 156 i~~l~~~i~~~l~~ 169 (385)
++++|..+++.+..
T Consensus 161 v~~~f~~l~~~~~~ 174 (187)
T cd04129 161 VDDVFEAATRAALL 174 (187)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987754
No 156
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.88 E-value=2.6e-22 Score=166.57 Aligned_cols=114 Identities=34% Similarity=0.559 Sum_probs=107.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 305 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 305 (385)
||+++|.+|||||+|+++|+.+.|...|.+|++.++..+.+.+++..+.+.||||||+++|..++..+++++|++|+|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999999999888888888888999999999999999999999999999999999
Q ss_pred CCChhhhhh---------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 306 VTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 306 ~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
++++.||+. |++|||++|.||+++|..|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999977 79999999999999999999
Q ss_pred HHHhc
Q psy125 335 RKLIG 339 (385)
Q Consensus 335 ~~i~~ 339 (385)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 97754
No 157
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.88 E-value=3.1e-22 Score=165.62 Aligned_cols=115 Identities=29% Similarity=0.606 Sum_probs=107.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|.+|||||+|++++..++|...+.++.|.++....+..++..+.+.+|||+|++++..++..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998899999998887777777777889999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|++++.||+. |++|||++|.||+++|+++++.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999987 8999999999999999999997
Q ss_pred Hhc
Q psy125 337 LIG 339 (385)
Q Consensus 337 i~~ 339 (385)
+..
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 653
No 158
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.88 E-value=2.6e-22 Score=173.09 Aligned_cols=116 Identities=30% Similarity=0.502 Sum_probs=108.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC-eeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
+|++++|.+|||||+|+++|..+.|...+.+|+|.++..+.+.+++ ..+.+.||||+|++.+..++..|++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999999998888888764 578999999999999999999999999999999
Q ss_pred EeCCChhhhhh---------------------------------------------------hheeccccCCCchHHHHH
Q psy125 304 FDVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 304 ~d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
||++++.||++ +++|||++|.||+++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999987 799999999999999999
Q ss_pred HHHHHhcC
Q psy125 333 LARKLIGD 340 (385)
Q Consensus 333 l~~~i~~~ 340 (385)
|++.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99998864
No 159
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.88 E-value=7.4e-22 Score=162.79 Aligned_cols=151 Identities=25% Similarity=0.414 Sum_probs=115.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-CCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~-~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+|+++|++|||||||+++|.++. +...+.++.|.+.... ..+.+.+.+|||||...+...+..++.++|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999988765 3556778887654332 235788999999999988888889999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHh----cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRV----CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~----~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
|++++.++.....|+..+... ..+.|+++++||+|+.......+...... .....++++||+++.|+++++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 999998887776777666542 14789999999999865432222221111 112358899999999999999
Q ss_pred HHHHH
Q psy125 161 LWLAR 165 (385)
Q Consensus 161 ~~i~~ 165 (385)
.+|+.
T Consensus 157 ~~l~~ 161 (162)
T cd04157 157 QWLQA 161 (162)
T ss_pred HHHhc
Confidence 98864
No 160
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=4.4e-21 Score=173.38 Aligned_cols=201 Identities=16% Similarity=0.111 Sum_probs=147.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--------chh
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRD 76 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------~~~ 76 (385)
|.++...|+|+|++|||||||+|+|++.. ...+++.+++|+.........+...+.++||||...... ...
T Consensus 1 ~~~~~g~V~iiG~pn~GKSTLin~L~g~~-~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 1 MGFKSGFVAIVGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred CCceeEEEEEECCCCCCHHHHHHHHhCCc-eeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 34577889999999999999999976644 344556666777665544444558899999999754322 223
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc-chhhhH-HHHHHHHh-cCCeEEEEcCCCC
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK-DRKVKA-KSIVFHRK-KNLQYYDISAKSN 153 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~-~~~~~~-~~~~~~~~-~~~~~~~~Sa~~~ 153 (385)
..+.++|++++|+|+++... ....++..... ..+.|+++|+||+|+. ...... ....+... ....++++||+++
T Consensus 80 ~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~-~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~ 156 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIG--PGDEFILEKLK-KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKG 156 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHh-hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence 35678999999999988322 22233322222 1368999999999997 323222 22223332 2458999999999
Q ss_pred CChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhh
Q psy125 154 YNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMA 217 (385)
Q Consensus 154 ~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 217 (385)
.|+++++..|...+... ++++++...+|...+..+.+.+++.+...+.++.||...
T Consensus 157 ~gv~~L~~~L~~~l~~~--------~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~ 212 (292)
T PRK00089 157 DNVDELLDVIAKYLPEG--------PPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVA 212 (292)
T ss_pred CCHHHHHHHHHHhCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEE
Confidence 99999999999987544 568888999999999999999999999999999998644
No 161
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.88 E-value=2.4e-22 Score=165.88 Aligned_cols=113 Identities=27% Similarity=0.536 Sum_probs=103.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
++|++++|.+|||||+++++++.+.+...+.+|.+ ++....+.+++..+.+.||||||+++|..++..|++++|++|+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999999988888875 55566777788888999999999999999999999999999999
Q ss_pred EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
||++++.||++ |++|||++|.||+++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999987 78999999999999999999
Q ss_pred HHH
Q psy125 335 RKL 337 (385)
Q Consensus 335 ~~i 337 (385)
+++
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 865
No 162
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.88 E-value=2.7e-22 Score=165.76 Aligned_cols=114 Identities=28% Similarity=0.515 Sum_probs=104.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
++||+++|.+|||||+++++++.+.|...+.+|++..+ ...+.+++..+.+.||||||+++|..+++.+++++|++|+|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999999999888899987655 45667788888999999999999999999999999999999
Q ss_pred EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
||++++.||++ |++|||++|.||+++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999987 89999999999999999999
Q ss_pred HHHh
Q psy125 335 RKLI 338 (385)
Q Consensus 335 ~~i~ 338 (385)
+++.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8764
No 163
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.88 E-value=3.6e-22 Score=170.16 Aligned_cols=118 Identities=31% Similarity=0.606 Sum_probs=110.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|++|||||+|+++|..+.|...+.+|+|.++....+.+++..+.+.||||||++++..++..++++++++|+|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 58999999999999999999999999888999999888888888888888999999999999999999999999999999
Q ss_pred EeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 304 FDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 304 ~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
||++++.||++ |++|||++|.||+++|.+|++.
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~ 165 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITEL 165 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 99999999987 8999999999999999999999
Q ss_pred HhcCC
Q psy125 337 LIGDP 341 (385)
Q Consensus 337 i~~~~ 341 (385)
++...
T Consensus 166 ~~~~~ 170 (199)
T cd04110 166 VLRAK 170 (199)
T ss_pred HHHhh
Confidence 98653
No 164
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.88 E-value=3.8e-22 Score=165.26 Aligned_cols=116 Identities=33% Similarity=0.661 Sum_probs=108.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+|++++|.+|||||++++++..+.|...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 37999999999999999999999999888899998888888888888888999999999999999999999999999999
Q ss_pred EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
||++++.||++ |+++||++|.||+++|.+|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999977 899999999999999999999
Q ss_pred HHhc
Q psy125 336 KLIG 339 (385)
Q Consensus 336 ~i~~ 339 (385)
++.+
T Consensus 162 ~~~~ 165 (166)
T cd01869 162 EIKK 165 (166)
T ss_pred HHHh
Confidence 8853
No 165
>KOG0395|consensus
Probab=99.88 E-value=2.1e-21 Score=162.88 Aligned_cols=161 Identities=27% Similarity=0.521 Sum_probs=141.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+++|.+|||||+|..+++.+.|...+.|+.+ +..++...++++.+.+.|+||+|++.+..+...++..+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 568999999999999999999999999999999999 5556667778899999999999999998999999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
||+++++.+|+.+..++..+.+ .....|+++|+||+|+...+. ..+...++......++++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999988888855 234679999999999976333 455667788888899999999999999999999
Q ss_pred HHHHhc
Q psy125 164 ARKLIG 169 (385)
Q Consensus 164 ~~~l~~ 169 (385)
.+.+-.
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 997754
No 166
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.88 E-value=3.4e-22 Score=167.89 Aligned_cols=116 Identities=29% Similarity=0.564 Sum_probs=106.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC----------CeeEEEEEeeCCCccccCcccccc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN----------RGAIRFNVWDTAGQEKFGGLRDGY 293 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~i~Dt~G~~~~~~~~~~~ 293 (385)
.+|++++|.+|||||+|++++..+.|...+.+|++.++....+... +..+.+.||||||+++|..++..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 4899999999999999999999999999999999988877666554 356889999999999999999999
Q ss_pred cccCcEEEEEEeCCChhhhhh-------------------------------------------------hheeccccCC
Q psy125 294 YIQGQCAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSNY 324 (385)
Q Consensus 294 ~~~~~~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~ 324 (385)
++++|++|+|||++++.||++ |+||||++|.
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~ 163 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGT 163 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 999999999999999999987 7999999999
Q ss_pred CchHHHHHHHHHHhc
Q psy125 325 NFEKPFLWLARKLIG 339 (385)
Q Consensus 325 ~v~~~f~~l~~~i~~ 339 (385)
||+++|.+|++.+.+
T Consensus 164 ~v~~l~~~l~~~~~~ 178 (180)
T cd04127 164 NVEKAVERLLDLVMK 178 (180)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998864
No 167
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=4.7e-21 Score=163.20 Aligned_cols=157 Identities=24% Similarity=0.388 Sum_probs=124.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
||+++|++|||||||+++++.+.+...+.++.+. ............+.+.+||++|...+..++..++.++|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 6899999999999999999998887766666543 333445556667899999999998888888888999999999999
Q ss_pred CCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcch-hh--hHHHHHHH-HhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 91 VTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDR-KV--KAKSIVFH-RKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~-~~--~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
++++.+++.+..|+..+.... .+.|+++++||.|+... .. ........ ......++++||+++.|+++++.+|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 999999998888887776643 47899999999998642 21 11122222 23346789999999999999999999
Q ss_pred HHHh
Q psy125 165 RKLI 168 (385)
Q Consensus 165 ~~l~ 168 (385)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 9764
No 168
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=3.9e-22 Score=171.14 Aligned_cols=117 Identities=29% Similarity=0.611 Sum_probs=108.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEe-CCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
.+||+++|.+|||||+|+++++.+.+...+.+|+|.++..+.+.+ ++..+.+.+|||+|++++..++..|++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 379999999999999999999999998888999998888887776 4567899999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|||++++.||++ |+||||++|.||+++|.+|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999988 8999999999999999999
Q ss_pred HHHHhcC
Q psy125 334 ARKLIGD 340 (385)
Q Consensus 334 ~~~i~~~ 340 (385)
++.+.+.
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9998776
No 169
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.88 E-value=7.9e-22 Score=162.39 Aligned_cols=116 Identities=33% Similarity=0.536 Sum_probs=107.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||+|+++++.+.|...+.++.+.+.....+.+++..+.+.+|||+|+++|..++..|++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888888888887777788888899999999999999999999999999999999
Q ss_pred eCCChhhhhh--------------------------------------------hheeccccCCCchHHHHHHHHHHhcC
Q psy125 305 DVTSRITYKN--------------------------------------------YYDISAKSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 305 d~~~~~s~~~--------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~~ 340 (385)
|++++.+|++ +++|||++|.||+++|..+++.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999876 78999999999999999999988754
No 170
>KOG0083|consensus
Probab=99.88 E-value=4.2e-23 Score=153.40 Aligned_cols=156 Identities=25% Similarity=0.592 Sum_probs=136.4
Q ss_pred EEcCCCCcHHHHHHHHhcCCCC-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCC
Q psy125 14 LVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 92 (385)
Q Consensus 14 lvG~~g~GKSTLin~ll~~~~~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~ 92 (385)
++|++++|||+|+-++-.+.+. ....++.|+++..+.+..+...+++.+|||.|++++++....|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 7899999999999876555543 345688999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 93 SRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
+..+|++...|+.++.... ....+++++||+|+..++. ..+...++...+++++++|+++|.+++..|..|++.+.+
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 9999999999999987743 4567789999999976544 456677889999999999999999999999999987754
No 171
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.88 E-value=3.1e-21 Score=163.14 Aligned_cols=144 Identities=21% Similarity=0.355 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-----CeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-----RGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-----~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
+||+++|.+|||||||+++++.+.+...+.++.|.+......... ...+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888999977766655553 457899999999999999899999999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHh--------------------cCCCCEEEEEeCCCCcchhh------hHHHHHHH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRV--------------------CENIPIVLCGNKVDIKDRKV------KAKSIVFH 138 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~--------------------~~~~~~ilv~nK~Dl~~~~~------~~~~~~~~ 138 (385)
+|+|||++++.+++++..|+..+... ..+.|+++|+||.|+..++. ......++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999888652 13689999999999865432 12233456
Q ss_pred HhcCCeEEEEcCCCC
Q psy125 139 RKKNLQYYDISAKSN 153 (385)
Q Consensus 139 ~~~~~~~~~~Sa~~~ 153 (385)
.+.+.+.+..++.+.
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 777888777776643
No 172
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.87 E-value=5.3e-22 Score=164.59 Aligned_cols=115 Identities=25% Similarity=0.531 Sum_probs=107.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||+++++++.+.|...+.++++.++..+.+.+++..+.+.+|||+|++++..+++.++++++++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999999999999999988888888888999999999999999999999999999999999
Q ss_pred eCCChhhhhh-----------------------------------------------------hheeccccCCCchHHHH
Q psy125 305 DVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKPFL 331 (385)
Q Consensus 305 d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~f~ 331 (385)
|++++.||+. |++|||++|.||+++|.
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999988764 89999999999999999
Q ss_pred HHHHHHhc
Q psy125 332 WLARKLIG 339 (385)
Q Consensus 332 ~l~~~i~~ 339 (385)
+|++.+.+
T Consensus 161 ~l~~~l~~ 168 (168)
T cd04119 161 TLFSSIVD 168 (168)
T ss_pred HHHHHHhC
Confidence 99998763
No 173
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.87 E-value=4.5e-21 Score=157.66 Aligned_cols=155 Identities=30% Similarity=0.571 Sum_probs=126.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
||+++|++|||||||+++++.+.+.....++.+ .............+.+.+||+||...+......++..+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999988877777666666 4444455556667899999999998887888888999999999999
Q ss_pred CCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 91 VTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
++++.++..+..|...+..... ..|+++++||+|+..... ......+....+.+++++|++++.|+++++..|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999888888877776544 799999999999875322 334445556666799999999999999999998865
No 174
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=9.3e-22 Score=166.30 Aligned_cols=116 Identities=33% Similarity=0.665 Sum_probs=108.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||+|++++..+.|...+.++.|.++....+.+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 48999999999999999999999998889999998888888888888889999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|++++.||++ |+|+||++|.||+++|.+|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999987 8899999999999999999999
Q ss_pred HhcC
Q psy125 337 LIGD 340 (385)
Q Consensus 337 i~~~ 340 (385)
+...
T Consensus 161 ~~~~ 164 (188)
T cd04125 161 IIKR 164 (188)
T ss_pred HHHH
Confidence 9754
No 175
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.87 E-value=6.7e-22 Score=162.97 Aligned_cols=112 Identities=29% Similarity=0.529 Sum_probs=102.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||+|+++++.+.|...+.+|.+..+ ...+.+++..+.+.+|||+|++++..++..|+++++++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999999999888999887554 555677888888999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|++++.+|++ |++|||++|.||+++|.++++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999887 8999999999999999999986
Q ss_pred H
Q psy125 337 L 337 (385)
Q Consensus 337 i 337 (385)
+
T Consensus 161 ~ 161 (162)
T cd04138 161 I 161 (162)
T ss_pred h
Confidence 5
No 176
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.87 E-value=8e-22 Score=163.97 Aligned_cols=115 Identities=32% Similarity=0.658 Sum_probs=107.4
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+|++++|.+|||||+|+++++.+.|...+.+++|.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 35899999999999999999999999988888999988888888888899999999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||++++.||+. |+||||++|.||.++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAF 163 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHH
Confidence 999999999886 8999999999999999
Q ss_pred HHHHHHH
Q psy125 331 LWLARKL 337 (385)
Q Consensus 331 ~~l~~~i 337 (385)
.++++++
T Consensus 164 ~~~~~~~ 170 (170)
T cd04116 164 EEAVRRV 170 (170)
T ss_pred HHHHhhC
Confidence 9999864
No 177
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.87 E-value=4.4e-21 Score=159.99 Aligned_cols=153 Identities=24% Similarity=0.352 Sum_probs=116.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.+||+++|++|+|||||++++..+.+.. +.++.|.+.... ....+.+.+||+||+..+...+..++.++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~----~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEI----VYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEE----EECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999988777654 566777654322 2246889999999999888888888999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
|+|++++.++.....++..+... ..+.|+++++||+|+.......+..... .....+++++||+++.|+++++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence 99999998887666666655432 2468999999999986532222221111 1223468999999999999999
Q ss_pred HHHHH
Q psy125 161 LWLAR 165 (385)
Q Consensus 161 ~~i~~ 165 (385)
.+|++
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 98864
No 178
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.87 E-value=7.9e-22 Score=162.65 Aligned_cols=113 Identities=38% Similarity=0.752 Sum_probs=109.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 305 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 305 (385)
||+++|+.+||||+|+++|..+.|...+.+|.|.+...+.+..++..+.+.|||++|+++|..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125 306 VTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARKL 337 (385)
Q Consensus 306 ~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i 337 (385)
++++.||++ |+||||+++.||.++|..++++|
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999 99999999999999999999988
Q ss_pred h
Q psy125 338 I 338 (385)
Q Consensus 338 ~ 338 (385)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 179
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.87 E-value=6.8e-22 Score=167.27 Aligned_cols=117 Identities=32% Similarity=0.489 Sum_probs=105.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 305 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 305 (385)
||+++|.+|||||+|+++|..+.|...+.+|.+..+ ...+.+++..+.+.||||||+++|..++..|++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999999888889987554 3455677888889999999999999999999999999999999
Q ss_pred CCChhhhhh---------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 306 VTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 306 ~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
++++.||++ |+||||++|.||+++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999987 89999999999999999999
Q ss_pred HHHhcCCCc
Q psy125 335 RKLIGDPNL 343 (385)
Q Consensus 335 ~~i~~~~~~ 343 (385)
+.+......
T Consensus 160 ~~l~~~~~~ 168 (190)
T cd04144 160 RALRQQRQG 168 (190)
T ss_pred HHHHHhhcc
Confidence 988755444
No 180
>KOG0395|consensus
Probab=99.87 E-value=5.5e-22 Score=166.43 Aligned_cols=117 Identities=30% Similarity=0.550 Sum_probs=111.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+|++++|.+|||||+++.+|+.+.|...|.||++ +.+.+.+.+++..+.+.|+||+|+++|..+...|++++||+++|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 57999999999999999999999999999999997 77788888999999999999999999999999999999999999
Q ss_pred EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|+++|+.||+. |+|||||.+.||+++|..|+
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~ 161 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV 161 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence 99999999999 89999999999999999999
Q ss_pred HHHhcCC
Q psy125 335 RKLIGDP 341 (385)
Q Consensus 335 ~~i~~~~ 341 (385)
+.+....
T Consensus 162 r~~~~~~ 168 (196)
T KOG0395|consen 162 REIRLPR 168 (196)
T ss_pred HHHHhhh
Confidence 9987743
No 181
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.87 E-value=5.1e-21 Score=162.15 Aligned_cols=155 Identities=19% Similarity=0.314 Sum_probs=117.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||++++.++.+ ..+.++.+.+... +..+.+.+.+||+||+..+...+..+++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~~~~----i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPTSEE----LTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcceEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 4578999999999999999999877665 3455666554322 2224578999999999888777888899999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh----------------cCCeEEEE
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK----------------KNLQYYDI 148 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~----------------~~~~~~~~ 148 (385)
+|+|+++..++.....++..+.+. ..+.|+++++||+|+.......+...+... ....++++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence 999999988887766777666542 246899999999998643233333333321 22368999
Q ss_pred cCCCCCChHHHHHHHHHH
Q psy125 149 SAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~ 166 (385)
||+++.|+++.+.+|++.
T Consensus 172 Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 172 SVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EecCCCChHHHHHHHHhh
Confidence 999999999999999764
No 182
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.87 E-value=1.6e-20 Score=157.72 Aligned_cols=160 Identities=24% Similarity=0.382 Sum_probs=127.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
.||+|+|++|||||||+++++.+.+...+.++.+.... .........+.+.+|||||+..+...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS-KIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEE-EEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999988776666666554332 33444556788899999999888878888899999999999
Q ss_pred eCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
|+++..+++.+..|+..+.+.. .+.|+++++||+|+..... ......+......+++++|++++.|+.+++.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999988888877776632 4679999999999864322 22334455555678999999999999999999998
Q ss_pred HHhcC
Q psy125 166 KLIGD 170 (385)
Q Consensus 166 ~l~~~ 170 (385)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 87543
No 183
>PLN03110 Rab GTPase; Provisional
Probab=99.87 E-value=1.6e-21 Score=168.09 Aligned_cols=119 Identities=31% Similarity=0.542 Sum_probs=111.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|++|||||+|+++|..+.+...+.+|+|.++....+.+++..+.+.||||+|+++|..++..++++++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 35899999999999999999999999988889999999988888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.||++ |+||||++|.||+++|.+|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999977 89999999999999999999
Q ss_pred HHHhcCC
Q psy125 335 RKLIGDP 341 (385)
Q Consensus 335 ~~i~~~~ 341 (385)
+.+.+..
T Consensus 171 ~~i~~~~ 177 (216)
T PLN03110 171 LEIYHII 177 (216)
T ss_pred HHHHHHh
Confidence 9997743
No 184
>KOG0393|consensus
Probab=99.86 E-value=3.5e-22 Score=163.36 Aligned_cols=118 Identities=31% Similarity=0.494 Sum_probs=111.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
.+|++++|++++|||+++..|..+.|++.|.||+. +.+...+.++ ++.+.+.+|||+||+.|..+++..|+++|+||+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 58999999999999999999999999999999995 6677778885 999999999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125 303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK 321 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak 321 (385)
+|++.++.||++ |+||||+
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~ 162 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSAL 162 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhh
Confidence 999999999998 9999999
Q ss_pred cCCCchHHHHHHHHHHhcCCC
Q psy125 322 SNYNFEKPFLWLARKLIGDPN 342 (385)
Q Consensus 322 ~~~~v~~~f~~l~~~i~~~~~ 342 (385)
+..||.++|+..++..+..++
T Consensus 163 tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 163 TQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999988765
No 185
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.86 E-value=1.7e-21 Score=164.58 Aligned_cols=116 Identities=31% Similarity=0.432 Sum_probs=104.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
+||+++|.+|||||+++++++.+.|...+.++++.++... +... +..+.+.||||||+++|..+++.+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 4899999999999999999999999999999987766443 4444 6778899999999999999999999999999999
Q ss_pred EeCCChhhhhh-----------------------------------------------------hheeccccCCCchHHH
Q psy125 304 FDVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 304 ~d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
||++++.||++ |+||||++|.||+++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence 99999999987 7999999999999999
Q ss_pred HHHHHHHhcCC
Q psy125 331 LWLARKLIGDP 341 (385)
Q Consensus 331 ~~l~~~i~~~~ 341 (385)
..+++.+....
T Consensus 160 ~~l~~~~~~~~ 170 (187)
T cd04132 160 DTAIEEALKKE 170 (187)
T ss_pred HHHHHHHHhhh
Confidence 99999987653
No 186
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.86 E-value=2.1e-21 Score=158.88 Aligned_cols=106 Identities=21% Similarity=0.306 Sum_probs=93.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|++|||||+++.+|+.+.|...+.++. ..+ ...+.+++..+.+.||||+|++. ..|++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 489999999999999999999999888776653 333 46677888888999999999975 35788999999999
Q ss_pred eCCChhhhhh----------------------------------------------------hheeccccCCCchHHHHH
Q psy125 305 DVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 305 d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|++++.||++ |+|||||+|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999 899999999999999999
Q ss_pred HHHHH
Q psy125 333 LARKL 337 (385)
Q Consensus 333 l~~~i 337 (385)
+++++
T Consensus 154 ~~~~~ 158 (158)
T cd04103 154 AAQKI 158 (158)
T ss_pred HHhhC
Confidence 99764
No 187
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=1.7e-21 Score=161.13 Aligned_cols=114 Identities=35% Similarity=0.650 Sum_probs=106.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+|++++|.+|+|||+|++++..+.|...+.++.+.++....+..++..+.+.||||||++++..++..+++++|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999999988999998888888888888778899999999999999999999999999999
Q ss_pred EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
||++++.||+. ++||||++|.||+++|.+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence 99999999977 79999999999999999999
Q ss_pred HHH
Q psy125 335 RKL 337 (385)
Q Consensus 335 ~~i 337 (385)
+++
T Consensus 163 ~~l 165 (165)
T cd01864 163 TEL 165 (165)
T ss_pred HhC
Confidence 863
No 188
>KOG0393|consensus
Probab=99.86 E-value=2.5e-21 Score=158.31 Aligned_cols=164 Identities=29% Similarity=0.518 Sum_probs=141.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEe-CCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
...+|++|||+.++|||+|+-.+..+.|...+.|+...++... ..+ ++..+.+.+|||.|+++|..++...++++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999988555444 555 58899999999999999999888899999999
Q ss_pred EEEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcC-CeEEEEc
Q psy125 86 IIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKN-LQYYDIS 149 (385)
Q Consensus 86 llV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~S 149 (385)
|++|++.++.+++++. .|+.++.+++++.|+++|++|.||.++.. ..+...++...+ ..++++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999999865 69999999999999999999999974321 234455666666 5899999
Q ss_pred CCCCCChHHHHHHHHHHHhcCC
Q psy125 150 AKSNYNFEKPFLWLARKLIGDP 171 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~ 171 (385)
|++..|+.+.|...+++....+
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhccc
Confidence 9999999999999999886654
No 189
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.86 E-value=2.7e-21 Score=160.78 Aligned_cols=114 Identities=33% Similarity=0.612 Sum_probs=106.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC-cccccccccCcEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-GLRDGYYIQGQCAII 302 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~~~~~~~~~il 302 (385)
.+||+++|++|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||+|++++. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999999998899999988888888888888999999999999887 578889999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------hheecccc---CCCchHHH
Q psy125 303 MFDVTSRITYKN-------------------------------------------------YYDISAKS---NYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~---~~~v~~~f 330 (385)
|||++++.||++ |+||||++ +.||+++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999987 89999999 89999999
Q ss_pred HHHHHHH
Q psy125 331 LWLARKL 337 (385)
Q Consensus 331 ~~l~~~i 337 (385)
..+++++
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9999876
No 190
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.86 E-value=2.7e-21 Score=160.37 Aligned_cols=116 Identities=30% Similarity=0.586 Sum_probs=108.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|.+|||||+|+++++.+.+...+.++.|.++....+..++....+.||||+|++++..+...+++++|++|+|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999999888899999998888888888888999999999999999999999999999999
Q ss_pred EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
||++++.||++ |+|+||++|.||+++|.++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999987 899999999999999999999
Q ss_pred HHhc
Q psy125 336 KLIG 339 (385)
Q Consensus 336 ~i~~ 339 (385)
.+.+
T Consensus 164 ~~~~ 167 (168)
T cd01866 164 EIYE 167 (168)
T ss_pred HHHh
Confidence 8764
No 191
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.86 E-value=2.2e-21 Score=160.48 Aligned_cols=110 Identities=26% Similarity=0.503 Sum_probs=99.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||+++++++.+.|...+.++.+.++ .+.+..+...+.+.+|||+|+++|..++..++++++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 6899999999999999999999999888889887555 445566777889999999999999999999999999999999
Q ss_pred eCCChhhhhh---------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 305 DVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 305 d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|++++.||++ |+||||++|.||+++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999976 8999999999999999999
Q ss_pred HH
Q psy125 334 AR 335 (385)
Q Consensus 334 ~~ 335 (385)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 85
No 192
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.86 E-value=8.6e-21 Score=156.12 Aligned_cols=151 Identities=20% Similarity=0.303 Sum_probs=113.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
||+++|++|||||||+++|..+.+.. ..++.+.+..... . .+.+.+.+||++|+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~--~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQ--L-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEE--e-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999988877653 4566665443222 2 246889999999998888888888999999999999
Q ss_pred CCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHH------HHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 91 VTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVF------HRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
++++.++.....|+..+... ..+.|+++++||+|+.......+.... ......+++++||+++.|+++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 99998887777777666542 257899999999998542222222111 1112346889999999999999998
Q ss_pred HHH
Q psy125 163 LAR 165 (385)
Q Consensus 163 i~~ 165 (385)
|++
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 864
No 193
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=4.7e-21 Score=158.95 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=108.5
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccc-cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 300 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 300 (385)
+..+|++++|.+|||||+++++|+.+.|. ..|.+|.+.++....+.+++..+.+.+||++|++.+..++..||+++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 45789999999999999999999999998 88999998888777778888888899999999999999999999999999
Q ss_pred EEEEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHH
Q psy125 301 IIMFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 301 ilv~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|+|||++++.||++ ++++||++|.||+++|..+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l 161 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKL 161 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHH
Confidence 99999999999876 5899999999999999999
Q ss_pred HHHHhc
Q psy125 334 ARKLIG 339 (385)
Q Consensus 334 ~~~i~~ 339 (385)
++.+..
T Consensus 162 ~~~~~~ 167 (169)
T cd01892 162 ATAAQY 167 (169)
T ss_pred HHHhhC
Confidence 998753
No 194
>PLN03108 Rab family protein; Provisional
Probab=99.86 E-value=2.3e-21 Score=166.46 Aligned_cols=119 Identities=30% Similarity=0.568 Sum_probs=110.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|++|||||+|++++..+.|...+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999989888999999998888888888888999999999999999999999999999999
Q ss_pred EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
||++++.||+. |+|+||++|.||+++|.++++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999987 899999999999999999999
Q ss_pred HHhcCCC
Q psy125 336 KLIGDPN 342 (385)
Q Consensus 336 ~i~~~~~ 342 (385)
.+.++.+
T Consensus 166 ~~~~~~~ 172 (210)
T PLN03108 166 KIYKKIQ 172 (210)
T ss_pred HHHHHhh
Confidence 9987543
No 195
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.86 E-value=2.7e-21 Score=159.99 Aligned_cols=114 Identities=32% Similarity=0.612 Sum_probs=107.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+|++++|.+|||||++++++..+.+...+.++.+.++....+..++..+.+.+|||||++++..++..++++++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 37999999999999999999999999888899999888888888888888999999999999999999999999999999
Q ss_pred EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
||++++.||++ |+||||++|.||+++|++++.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999987 899999999999999999998
Q ss_pred HH
Q psy125 336 KL 337 (385)
Q Consensus 336 ~i 337 (385)
.+
T Consensus 163 ~i 164 (165)
T cd01868 163 EI 164 (165)
T ss_pred Hh
Confidence 76
No 196
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.86 E-value=5.6e-21 Score=162.30 Aligned_cols=118 Identities=25% Similarity=0.511 Sum_probs=108.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCcccc-ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
+||+++|.+|||||+|+++|+.+.|.. .+.+|+|.++....+.+++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999998875 6889999888888888898889999999999999999999999999999999
Q ss_pred EeCCChhhhhh---------------------------------------------------hheeccccCCCchHHHHH
Q psy125 304 FDVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 304 ~d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
||++++.||++ |+++||++|.||+++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999965 589999999999999999
Q ss_pred HHHHHhcCCC
Q psy125 333 LARKLIGDPN 342 (385)
Q Consensus 333 l~~~i~~~~~ 342 (385)
+++.+.+...
T Consensus 161 i~~~~~~~~~ 170 (193)
T cd04118 161 VAEDFVSRAN 170 (193)
T ss_pred HHHHHHHhcc
Confidence 9999977554
No 197
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.86 E-value=1.9e-20 Score=155.42 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc---------hhhhhc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL---------RDGYYI 80 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~---------~~~~~~ 80 (385)
.+|+++|++|||||||+|+|++..+.. .+..+.|..........+.+.+.+|||||+...... ......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV--APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc--CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999988766532 233444555555555556789999999997421100 011112
Q ss_pred cCcEEEEEEeCCChhhh--hcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125 81 QGQCAIIMFDVTSRITY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~--~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (385)
.+|++++|+|+++..++ .....|+..+.....+.|+++|+||+|+...........+......+++++||+++.|+++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence 36899999999987653 3444566666554458999999999998654433333444555567899999999999999
Q ss_pred HHHHHHHHH
Q psy125 159 PFLWLARKL 167 (385)
Q Consensus 159 l~~~i~~~l 167 (385)
++.++.+.+
T Consensus 159 l~~~l~~~~ 167 (168)
T cd01897 159 VKNKACELL 167 (168)
T ss_pred HHHHHHHHh
Confidence 999998875
No 198
>PLN03118 Rab family protein; Provisional
Probab=99.86 E-value=3.6e-21 Score=165.63 Aligned_cols=120 Identities=35% Similarity=0.618 Sum_probs=109.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+|++++|.+|||||+|+++++.+.+ ..+.++.|.++....+.+++..+.+.||||||+++|..++..+++++|++|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 468999999999999999999988776 5678898888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHH
Q psy125 303 MFDVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 303 v~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|||++++.||++ |+||||++|.||+++|.+
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 171 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEE 171 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999887 799999999999999999
Q ss_pred HHHHHhcCCCc
Q psy125 333 LARKLIGDPNL 343 (385)
Q Consensus 333 l~~~i~~~~~~ 343 (385)
|++++...++.
T Consensus 172 l~~~~~~~~~~ 182 (211)
T PLN03118 172 LALKIMEVPSL 182 (211)
T ss_pred HHHHHHhhhhh
Confidence 99999876543
No 199
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.86 E-value=1.2e-20 Score=154.82 Aligned_cols=150 Identities=21% Similarity=0.328 Sum_probs=110.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
||+++|++|||||||++++..+.+. ...++.+.+... .+...+.+.+|||||+..+...+..++..++++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVET----VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEE----EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999997676654 345565554432 22356889999999999888888889999999999999
Q ss_pred CCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHHHHHH
Q psy125 91 VTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
++++.++.....++..+.+ ...+.|+++++||+|+.......+...... ....+++++||+++.|+++++.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 9998777655555544433 224789999999999864332222221111 112469999999999999999988
Q ss_pred HH
Q psy125 164 AR 165 (385)
Q Consensus 164 ~~ 165 (385)
++
T Consensus 156 ~~ 157 (158)
T cd04151 156 VN 157 (158)
T ss_pred hc
Confidence 65
No 200
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.86 E-value=2.7e-21 Score=159.41 Aligned_cols=112 Identities=33% Similarity=0.674 Sum_probs=104.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC--CeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN--RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
+||+++|.+|+|||+|++++..+.|...+.++++.++....+.+. +..+.+.||||||+++|..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999999999999999988877777776 778899999999999999999999999999999
Q ss_pred EEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 303 MFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 303 v~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
|||++++.||++ |+++||++|.|++++|.+|+.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999987 899999999999999999986
Q ss_pred H
Q psy125 336 K 336 (385)
Q Consensus 336 ~ 336 (385)
+
T Consensus 161 ~ 161 (162)
T cd04106 161 K 161 (162)
T ss_pred h
Confidence 4
No 201
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=3.8e-21 Score=162.83 Aligned_cols=118 Identities=31% Similarity=0.660 Sum_probs=107.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCcccc-ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
+||+++|.+|||||+|++++..+.|.. .+.++.+.++....+.+++..+.+.||||||++++..++..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888864 6788888888777778888889999999999999999999999999999999
Q ss_pred EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
||++++.||++ |+|+||++|.||+++|.+|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999976 899999999999999999999
Q ss_pred HHhcCCC
Q psy125 336 KLIGDPN 342 (385)
Q Consensus 336 ~i~~~~~ 342 (385)
.+.....
T Consensus 161 ~~~~~~~ 167 (191)
T cd04112 161 ELKHRKY 167 (191)
T ss_pred HHHHhcc
Confidence 9987753
No 202
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.86 E-value=3.1e-21 Score=158.91 Aligned_cols=113 Identities=31% Similarity=0.658 Sum_probs=106.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|.+|||||+|+++++.+.+...+.++.+.++....+.+++..+.+.+|||||+++|..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999999999999998888888888888889999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|++++.+|++ |+++||++|.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999987 8999999999999999999986
Q ss_pred H
Q psy125 337 L 337 (385)
Q Consensus 337 i 337 (385)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 4
No 203
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.86 E-value=4.8e-21 Score=159.92 Aligned_cols=112 Identities=29% Similarity=0.451 Sum_probs=101.9
Q ss_pred EEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeC
Q psy125 227 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 306 (385)
Q Consensus 227 i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~ 306 (385)
|+++|.+|||||+|+++|+.+.|...+.++.+..+ ...+.+++..+.+.+|||||+++|..+++.+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999999988888886554 45567788888999999999999999999999999999999999
Q ss_pred CChhhhhh-------------------------------------------------------------hheeccccCCC
Q psy125 307 TSRITYKN-------------------------------------------------------------YYDISAKSNYN 325 (385)
Q Consensus 307 ~~~~s~~~-------------------------------------------------------------~~e~Sak~~~~ 325 (385)
+++.||++ |+||||++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 99999986 78999999999
Q ss_pred chHHHHHHHHHHhc
Q psy125 326 FEKPFLWLARKLIG 339 (385)
Q Consensus 326 v~~~f~~l~~~i~~ 339 (385)
|+++|..+++.+++
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998754
No 204
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=8.3e-21 Score=157.37 Aligned_cols=151 Identities=24% Similarity=0.406 Sum_probs=111.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEF------EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~------~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
+|+++|++|||||||++++..... ...+.++.+...... ......+.+|||||+..+...+..++.++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTI----EVGNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEE----EECCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999765322 122334444433222 2246889999999999888888888999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh-------cCCeEEEEcCCCCCC
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK-------KNLQYYDISAKSNYN 155 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~g 155 (385)
+++|+|++++.++.....++..+.+. ..+.|+++++||+|+.......+...+... ...+++++||+++.|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 99999999988777766677666542 257899999999998654332333333222 234799999999999
Q ss_pred hHHHHHHHHH
Q psy125 156 FEKPFLWLAR 165 (385)
Q Consensus 156 i~~l~~~i~~ 165 (385)
+++++.+|+.
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 205
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.86 E-value=1.1e-20 Score=156.46 Aligned_cols=150 Identities=23% Similarity=0.306 Sum_probs=116.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
+|+++|++|||||||++++.++ +...+.++.|.+.... ..+.+.+.+||+||+..++.++..++.++|++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~----~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKL----RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEE----EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999997655 6677788888764322 2256889999999998888888999999999999999
Q ss_pred CCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHH------HHHhc--CCeEEEEcCCCC------C
Q psy125 91 VTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIV------FHRKK--NLQYYDISAKSN------Y 154 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~------~~~~~--~~~~~~~Sa~~~------~ 154 (385)
+++..++..+..|+..+... ..+.|+++|+||+|+.......+... +.... ...++++||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 99998888888888777653 24789999999999876443222221 11111 236778999998 7
Q ss_pred ChHHHHHHHHH
Q psy125 155 NFEKPFLWLAR 165 (385)
Q Consensus 155 gi~~l~~~i~~ 165 (385)
|+.+-+.||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 89999999864
No 206
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.86 E-value=3.8e-21 Score=164.87 Aligned_cols=85 Identities=32% Similarity=0.577 Sum_probs=75.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||+|+++|+.+.|.. +.+|+|.++..+.+ ..+.+.||||+|+++|..++..|+++++++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999875 57888877655443 4678999999999999999999999999999999
Q ss_pred eCCChhhhhh
Q psy125 305 DVTSRITYKN 314 (385)
Q Consensus 305 d~~~~~s~~~ 314 (385)
|++++.||++
T Consensus 76 Dvt~~~Sf~~ 85 (220)
T cd04126 76 DVSNVQSLEE 85 (220)
T ss_pred ECCCHHHHHH
Confidence 9999999887
No 207
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.85 E-value=4e-21 Score=158.75 Aligned_cols=113 Identities=27% Similarity=0.557 Sum_probs=102.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||+|+++++.+.+...+.++.+ +...+.+.+++..+.+.+|||||++++..++..++++++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999889888888876 344556677788889999999999999999999999999999999
Q ss_pred eCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 305 DVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 305 d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
|++++.||++ |++|||++|.||+++|.+|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999877 899999999999999999998
Q ss_pred HHh
Q psy125 336 KLI 338 (385)
Q Consensus 336 ~i~ 338 (385)
++.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 874
No 208
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.85 E-value=2.7e-21 Score=161.94 Aligned_cols=113 Identities=26% Similarity=0.421 Sum_probs=97.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.++||||++++++..+.+. .+.||+|.+... + +...+.+.||||||+++++.++..||+++|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~--~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE--E--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999888776 467888866532 2 2346789999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||++++.+|++ +++|||++|+||+++|
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~ 170 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHH
Confidence 999999998875 3479999999999999
Q ss_pred HHHHHHHhcC
Q psy125 331 LWLARKLIGD 340 (385)
Q Consensus 331 ~~l~~~i~~~ 340 (385)
+||++++.++
T Consensus 171 ~~l~~~~~~~ 180 (181)
T PLN00223 171 DWLSNNIANK 180 (181)
T ss_pred HHHHHHHhhc
Confidence 9999988654
No 209
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.85 E-value=6.1e-21 Score=157.63 Aligned_cols=113 Identities=30% Similarity=0.518 Sum_probs=102.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+|++++|.+|||||+++++++.+.+...+.++.+..+ .....+++..+.+.+|||||++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 47999999999999999999999888888888876443 45566788888999999999999999999999999999999
Q ss_pred EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
||++++.+|++ |++|||++|.||+++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999877 89999999999999999999
Q ss_pred HHH
Q psy125 335 RKL 337 (385)
Q Consensus 335 ~~i 337 (385)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 865
No 210
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.85 E-value=8.9e-21 Score=158.10 Aligned_cols=110 Identities=31% Similarity=0.517 Sum_probs=100.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|.+|||||+++.+|..+.|...+.+|. .+.....+.+++..+.+.+|||||+++|..+++.+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999999999999887 4555566778888889999999999999999999999999999999
Q ss_pred eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125 305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~ 323 (385)
|++++.||++ |+||||++|
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 9999999876 789999999
Q ss_pred CCchHHHHHHHH
Q psy125 324 YNFEKPFLWLAR 335 (385)
Q Consensus 324 ~~v~~~f~~l~~ 335 (385)
.||+++|+.++.
T Consensus 160 ~~v~~lf~~~~~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHh
Confidence 999999998874
No 211
>PLN00023 GTP-binding protein; Provisional
Probab=99.85 E-value=3.2e-20 Score=164.10 Aligned_cols=139 Identities=22% Similarity=0.406 Sum_probs=115.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-------------CeeEEEEEEeCCCcccc
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-------------RGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-------------~~~~~~~i~Dt~g~~~~ 71 (385)
+....+||+|+|..|||||||+++|+.+.+...+.++.|.++....+.++ ...+.+.+|||+|++.+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 34667999999999999999999999999988889999988766555543 24688999999999999
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhc-------------CCCCEEEEEeCCCCcchh--------h
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-------------ENIPIVLCGNKVDIKDRK--------V 130 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~-------------~~~~~ilv~nK~Dl~~~~--------~ 130 (385)
..++..++++++++|+|||+++..+++++..|+..+.... .+.|+++|+||+|+..++ .
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 9999999999999999999999999999999999887642 247899999999986542 1
Q ss_pred hHHHHHHHHhcCC
Q psy125 131 KAKSIVFHRKKNL 143 (385)
Q Consensus 131 ~~~~~~~~~~~~~ 143 (385)
..+...++...+.
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 3455666666554
No 212
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.85 E-value=3e-20 Score=152.51 Aligned_cols=150 Identities=23% Similarity=0.392 Sum_probs=116.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
||+++|.+|||||||+++++++. .....++.+.+.....+ ..+.+.+||+||+..+...+..++.++|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999987776 44566677765544332 36889999999999888888889999999999999
Q ss_pred CCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHHHHHH
Q psy125 91 VTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
++++.++.....++..+... ..+.|+++++||+|+.......+...... ....+++++|++++.|+++++.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 99998888777776665542 35789999999999875442222222222 233479999999999999999887
Q ss_pred HH
Q psy125 164 AR 165 (385)
Q Consensus 164 ~~ 165 (385)
..
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 64
No 213
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.85 E-value=7.7e-21 Score=157.69 Aligned_cols=114 Identities=27% Similarity=0.505 Sum_probs=104.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|.+|||||++++++..+.+...+.++.+..+ .+.+.+++..+.+.+|||||+++|..++..++++++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 7899999999999999999999999888899987544 566677888889999999999999999999999999999999
Q ss_pred eCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 305 DVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 305 d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|++++.+|+. |++|||++|.||+++|.+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999987 78999999999999999999
Q ss_pred HHHhc
Q psy125 335 RKLIG 339 (385)
Q Consensus 335 ~~i~~ 339 (385)
++++.
T Consensus 161 ~~~~~ 165 (168)
T cd04177 161 RQIIC 165 (168)
T ss_pred HHHhh
Confidence 98864
No 214
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.85 E-value=9.6e-21 Score=160.66 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=101.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc--------ccccccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYIQ 296 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~~ 296 (385)
+||+++|.+|||||+|+++|+.+.|...+.++.+.+.....+.+++..+.+.||||||...+... ...++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 48999999999999999999999999889999877766666777888889999999998765322 2235789
Q ss_pred CcEEEEEEeCCChhhhhh----------------------------------------------------hheeccccCC
Q psy125 297 GQCAIIMFDVTSRITYKN----------------------------------------------------YYDISAKSNY 324 (385)
Q Consensus 297 ~~~~ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~ 324 (385)
+|++|+|||++++.||+. |+||||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999975 7999999999
Q ss_pred CchHHHHHHHHHHhcCC
Q psy125 325 NFEKPFLWLARKLIGDP 341 (385)
Q Consensus 325 ~v~~~f~~l~~~i~~~~ 341 (385)
||+++|+.+++.++.+.
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999999988654
No 215
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=3e-20 Score=156.23 Aligned_cols=155 Identities=17% Similarity=0.262 Sum_probs=116.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.++|+++|.+|||||||++++.++.+. .+.++.+.+... ...+++.+.+||+||+..++..+..++.++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEE----LAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEE----EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 35689999999999999999998876543 345555544322 2234688999999999888888889999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHh------------cCCeEEEEcCCC
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRK------------KNLQYYDISAKS 152 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~ 152 (385)
+|+|++++.++.....++..+.. ...+.|+++++||+|+.......++...... ....++++||++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 99999999888776666666554 2357899999999998643323333222211 233689999999
Q ss_pred CCChHHHHHHHHHH
Q psy125 153 NYNFEKPFLWLARK 166 (385)
Q Consensus 153 ~~gi~~l~~~i~~~ 166 (385)
+.|+++.+.+|...
T Consensus 170 ~~g~~~~~~wl~~~ 183 (184)
T smart00178 170 RMGYGEGFKWLSQY 183 (184)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999998754
No 216
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.85 E-value=1.5e-20 Score=156.96 Aligned_cols=112 Identities=28% Similarity=0.425 Sum_probs=101.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|.+|+|||+|++++..+.|...+.++.+.. ....+.+++..+.+.+|||||++.|..+++.+++++|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 589999999999999999999999988888887643 3446677888888999999999999999999999999999999
Q ss_pred eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125 305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~ 323 (385)
|++++.||++ |+||||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 9999999876 789999999
Q ss_pred CCchHHHHHHHHHH
Q psy125 324 YNFEKPFLWLARKL 337 (385)
Q Consensus 324 ~~v~~~f~~l~~~i 337 (385)
.||+++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
No 217
>KOG0081|consensus
Probab=99.85 E-value=9.2e-23 Score=156.25 Aligned_cols=117 Identities=30% Similarity=0.572 Sum_probs=107.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC---------CeeEEEEEeeCCCccccCcccccccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN---------RGAIRFNVWDTAGQEKFGGLRDGYYI 295 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~Dt~G~~~~~~~~~~~~~ 295 (385)
+|.+.+|++|||||+++.++..+.|.....+|+|.++..+.+..+ +..+.+++|||+||++|+++...+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 577889999999999999999999999999999999988877543 23578999999999999999999999
Q ss_pred cCcEEEEEEeCCChhhhhh-------------------------------------------------hheeccccCCCc
Q psy125 296 QGQCAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNF 326 (385)
Q Consensus 296 ~~~~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v 326 (385)
+|-||+|+||+|+..||.+ |+||||-+|.||
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv 169 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNV 169 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCH
Confidence 9999999999999999998 999999999999
Q ss_pred hHHHHHHHHHHhcCC
Q psy125 327 EKPFLWLARKLIGDP 341 (385)
Q Consensus 327 ~~~f~~l~~~i~~~~ 341 (385)
+++.+.|+..|.++-
T Consensus 170 ~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 170 EKAVELLLDLVMKRI 184 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887754
No 218
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.85 E-value=5.8e-20 Score=152.97 Aligned_cols=156 Identities=23% Similarity=0.455 Sum_probs=122.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|+.|||||||++++..+. .....||.|.+...... .++.+.+||.+|+..++..+..++.++|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~-~~~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGE-ISETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSS-EEEEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcc-ccccCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeE
Confidence 578999999999999999999976654 33466777766555444 5688999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH------hcCCeEEEEcCCCCCChHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR------KKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~ 158 (385)
+|+|.++...+......+..+.. ...+.|+++++||.|+.......++..... .....++.+|+.+|.|+.+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence 99999998888776666666655 235789999999999875433333332221 2234688999999999999
Q ss_pred HHHHHHHHH
Q psy125 159 PFLWLARKL 167 (385)
Q Consensus 159 l~~~i~~~l 167 (385)
.+.+|...+
T Consensus 167 ~l~WL~~~~ 175 (175)
T PF00025_consen 167 GLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999998764
No 219
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.85 E-value=6.4e-21 Score=166.71 Aligned_cols=112 Identities=28% Similarity=0.564 Sum_probs=102.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||+|+++|+.+.|...|.+|++ ++..+.+.+++..+.+.||||+|++.|..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999999988999986 566677788888899999999999999999999999999999999
Q ss_pred eCCChhhhhh----------------------------------------------------------hheeccccCCCc
Q psy125 305 DVTSRITYKN----------------------------------------------------------YYDISAKSNYNF 326 (385)
Q Consensus 305 d~~~~~s~~~----------------------------------------------------------~~e~Sak~~~~v 326 (385)
|++++.||++ |++|||++|.||
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 9999999853 799999999999
Q ss_pred hHHHHHHHHHH
Q psy125 327 EKPFLWLARKL 337 (385)
Q Consensus 327 ~~~f~~l~~~i 337 (385)
+++|.+|++..
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 220
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.84 E-value=5.6e-20 Score=154.21 Aligned_cols=154 Identities=17% Similarity=0.229 Sum_probs=111.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-------CCCcccc------cceeeeEEEEEEe-----CCeeEEEEEEeCCCccccc
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGE-------FEKKYVA------TLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEKFG 72 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~-------~~~~~~~------~~g~t~~~~~~~~-----~~~~~~~~i~Dt~g~~~~~ 72 (385)
+|+++|++|+|||||+++|+... +...+.+ +.|.+........ +...+.+.+|||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999988732 1112222 3355555443332 4567889999999999888
Q ss_pred cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEEEEc
Q psy125 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYYDIS 149 (385)
Q Consensus 73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~S 149 (385)
..+..++.++|++|+|+|+++..+++....|.... ..++|+++|+||+|+..........++....+. .++++|
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~---~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL---ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS 158 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH---HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence 88888999999999999999876665554444322 257899999999998643222222233333333 489999
Q ss_pred CCCCCChHHHHHHHHHHH
Q psy125 150 AKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l 167 (385)
|+++.|+++++.+|++.+
T Consensus 159 a~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 159 AKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccCCCCHHHHHHHHHhhC
Confidence 999999999999998864
No 221
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.84 E-value=1.3e-20 Score=155.63 Aligned_cols=113 Identities=34% Similarity=0.652 Sum_probs=106.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|++|||||+++++++.+.+...+.++.|.++....+.+++..+.+.||||||++++...+..+++++|++|+||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999988888999998888888888988999999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|++++.+|+. ++|+||++|.|++++|.+|++.
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999977 8999999999999999999998
Q ss_pred H
Q psy125 337 L 337 (385)
Q Consensus 337 i 337 (385)
|
T Consensus 162 l 162 (163)
T cd01860 162 L 162 (163)
T ss_pred h
Confidence 6
No 222
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=1.1e-20 Score=159.57 Aligned_cols=111 Identities=23% Similarity=0.397 Sum_probs=91.5
Q ss_pred eeEEEEECCCCCCHHHHHH-HHhcC-----ccccccccceee-EEEEEE--------EEeCCeeEEEEEeeCCCccccCc
Q psy125 224 SFKCVLVGDGGTGKTTFVK-RHLTG-----EFEKKYVATLGV-EVHPLV--------FHTNRGAIRFNVWDTAGQEKFGG 288 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~-~~~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~l~i~Dt~G~~~~~~ 288 (385)
.+||+++|..|||||+|+. ++..+ .|...|.||+|. +.+... +.+++..+.+.||||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3799999999999999996 55433 356678899863 322222 25678899999999999986 3
Q ss_pred ccccccccCcEEEEEEeCCChhhhhh------------------------------------------------------
Q psy125 289 LRDGYYIQGQCAIIMFDVTSRITYKN------------------------------------------------------ 314 (385)
Q Consensus 289 ~~~~~~~~~~~~ilv~d~~~~~s~~~------------------------------------------------------ 314 (385)
+...||+++|++|+|||++++.||++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 56779999999999999999999976
Q ss_pred -------------hheeccccCCCchHHHHHHHHH
Q psy125 315 -------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 315 -------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|+|||||+|.||+++|..++++
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 7899999999999999999975
No 223
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.84 E-value=4.9e-21 Score=158.57 Aligned_cols=109 Identities=26% Similarity=0.424 Sum_probs=94.4
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||++++++..+.+. .+.+|.|.++... . ...+.+.+|||+|++++..+++.+|+++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~--~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETV--T--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEE--E--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999877775 4678887665422 2 24678999999999999999999999999999
Q ss_pred EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125 302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
+|||++++.+|++ +++|||++|.||+++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence 9999999998876 579999999999999
Q ss_pred HHHHHH
Q psy125 330 FLWLAR 335 (385)
Q Consensus 330 f~~l~~ 335 (385)
|.||++
T Consensus 162 ~~~l~~ 167 (168)
T cd04149 162 LTWLSS 167 (168)
T ss_pred HHHHhc
Confidence 999975
No 224
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.84 E-value=7.1e-20 Score=150.13 Aligned_cols=150 Identities=27% Similarity=0.475 Sum_probs=115.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeC
Q psy125 12 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 91 (385)
Q Consensus 12 i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~ 91 (385)
|+++|++|||||||+|++.+..+...+.++.+...... ..+.+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKV----TKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEE----EECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 79999999999999999999888877777777654432 23458899999999988888888899999999999999
Q ss_pred CChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 92 TSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
++..++.....++..+.. ...+.|+++++||.|+............. .....+++++|++++.|+++++.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 998887666666655543 12578999999999986543222222111 11234789999999999999999886
Q ss_pred H
Q psy125 165 R 165 (385)
Q Consensus 165 ~ 165 (385)
+
T Consensus 158 ~ 158 (159)
T cd04159 158 K 158 (159)
T ss_pred h
Confidence 5
No 225
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.84 E-value=1e-20 Score=158.69 Aligned_cols=113 Identities=23% Similarity=0.412 Sum_probs=98.1
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||++++++..+.+.. +.+|.|.++.. +. ...+.+.+|||+|+++++.++..|++++|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--VE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999998888865 67888766543 22 346789999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||++++.+|++ +++|||++|.||+++|
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~ 170 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGL 170 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHH
Confidence 999999999877 3589999999999999
Q ss_pred HHHHHHHhcC
Q psy125 331 LWLARKLIGD 340 (385)
Q Consensus 331 ~~l~~~i~~~ 340 (385)
.||++.+.++
T Consensus 171 ~~l~~~i~~~ 180 (182)
T PTZ00133 171 DWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 226
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.84 E-value=5.8e-20 Score=152.75 Aligned_cols=154 Identities=17% Similarity=0.118 Sum_probs=108.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-EEEEEEeCCCccc----cccchhhh---hccC
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQEK----FGGLRDGY---YIQG 82 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-~~~~i~Dt~g~~~----~~~~~~~~---~~~~ 82 (385)
+|+++|++|||||||+|+|.+... .+...++.|+.........+. ..+.+|||||... ...+...+ +..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 589999999999999999775432 222333444444333333333 4899999999742 12223333 3469
Q ss_pred cEEEEEEeCCCh-hhhhcHHHHHHHHHHhc---CCCCEEEEEeCCCCcchhhhHH-HHHHHHh-cCCeEEEEcCCCCCCh
Q psy125 83 QCAIIMFDVTSR-ITYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVKAK-SIVFHRK-KNLQYYDISAKSNYNF 156 (385)
Q Consensus 83 d~illV~d~~~~-~~~~~~~~~~~~l~~~~---~~~~~ilv~nK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi 156 (385)
|++++|+|++++ .+++.+..|...+.... .+.|+++|+||+|+........ ...+... ...+++.+|++++.|+
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 999999999998 67777777887776542 3689999999999865443322 3334444 2568999999999999
Q ss_pred HHHHHHHHHH
Q psy125 157 EKPFLWLARK 166 (385)
Q Consensus 157 ~~l~~~i~~~ 166 (385)
++++.+|++.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 227
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.84 E-value=2.5e-20 Score=148.93 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------chhhhh--cc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYY--IQ 81 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------~~~~~~--~~ 81 (385)
++|+++|.||||||||+|+|.+.+ ..+.+++|+|.+........+...+.++|+||.-.... ....++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 589999999999999999966655 55788999999999888877779999999999643222 223333 68
Q ss_pred CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
.|+++.|+|++..+.- ..+..++.. .++|+++++||+|+..+.. ......+.+..+.+++++||+++.|+++++
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred CCEEEEECCCCCHHHH---HHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 9999999999875322 223334433 4899999999999876544 234455777788999999999999999998
Q ss_pred HHH
Q psy125 161 LWL 163 (385)
Q Consensus 161 ~~i 163 (385)
..|
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 765
No 228
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.84 E-value=1.6e-20 Score=155.80 Aligned_cols=114 Identities=26% Similarity=0.507 Sum_probs=98.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 305 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 305 (385)
|++++|.++||||++++++..+.+.. +.+|.|..... + +...+.+.+|||||++++..++..+++++|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~--~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVET--V--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEE--E--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 58999999999999999998877654 77887766542 2 2346789999999999999999999999999999999
Q ss_pred CCChhhhhh-----------------------------------------------------hheeccccCCCchHHHHH
Q psy125 306 VTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 306 ~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
++++.+|.+ |++||||+|.||+++|.|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 999999876 567899999999999999
Q ss_pred HHHHHhcCCCcc
Q psy125 333 LARKLIGDPNLE 344 (385)
Q Consensus 333 l~~~i~~~~~~~ 344 (385)
|++.+..+...+
T Consensus 156 l~~~~~~~~~~~ 167 (169)
T cd04158 156 LSRQLVAAGVLD 167 (169)
T ss_pred HHHHHhhccccc
Confidence 999998877654
No 229
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.84 E-value=9.9e-21 Score=155.39 Aligned_cols=106 Identities=27% Similarity=0.440 Sum_probs=92.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.++||||++++++..+.|. .+.||.|.+... +. ...+.+.+|||||++++..++..||+++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999888886 477888766532 22 24678999999999999999999999999999999
Q ss_pred eCCChhhhhh----------------------------------------------------hheeccccCCCchHHHHH
Q psy125 305 DVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 305 d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|++++.+|++ |++||||+|.||+++|+|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence 9999999876 468999999999999999
Q ss_pred HHH
Q psy125 333 LAR 335 (385)
Q Consensus 333 l~~ 335 (385)
|++
T Consensus 156 l~~ 158 (159)
T cd04150 156 LSN 158 (159)
T ss_pred Hhc
Confidence 974
No 230
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.83 E-value=2.5e-20 Score=153.49 Aligned_cols=112 Identities=31% Similarity=0.612 Sum_probs=104.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||+|+++++...+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888899888888888888887888999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|++++.||++ ++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 9999999987 8999999999999999999875
No 231
>KOG4252|consensus
Probab=99.83 E-value=2e-22 Score=157.66 Aligned_cols=116 Identities=34% Similarity=0.634 Sum_probs=111.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+|++++|..+||||+++.+|+.+-|...|..++|+++....+.+....+.+.+|||+||++|..+...||++|++.+||
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLV 99 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLV 99 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEE
Confidence 48999999999999999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred EeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 304 FDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 304 ~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|+.||+.||+. ++.+|+|...||.++|..|+.+
T Consensus 100 FSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK 179 (246)
T KOG4252|consen 100 FSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEK 179 (246)
T ss_pred EecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999998 8999999999999999999998
Q ss_pred Hhc
Q psy125 337 LIG 339 (385)
Q Consensus 337 i~~ 339 (385)
+.+
T Consensus 180 ~~q 182 (246)
T KOG4252|consen 180 LTQ 182 (246)
T ss_pred HHH
Confidence 876
No 232
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.83 E-value=2.1e-20 Score=155.92 Aligned_cols=110 Identities=28% Similarity=0.450 Sum_probs=95.4
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|++++..+.+. .+.+|+|.+..... . ..+.+.+|||||++++..++..|+++++++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~--~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVT--Y--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEE--E--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4589999999999999999999878774 46788876654332 2 45789999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||++++.+|++ |++|||++|.||+++|
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~ 166 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGL 166 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHH
Confidence 999999999876 4579999999999999
Q ss_pred HHHHHHH
Q psy125 331 LWLARKL 337 (385)
Q Consensus 331 ~~l~~~i 337 (385)
+||.+.+
T Consensus 167 ~~l~~~~ 173 (175)
T smart00177 167 TWLSNNL 173 (175)
T ss_pred HHHHHHh
Confidence 9998875
No 233
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.83 E-value=4.2e-20 Score=154.39 Aligned_cols=112 Identities=29% Similarity=0.428 Sum_probs=100.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
.|++++|.+|||||+|++++..+.|...+.++.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999999889999875553 45667788889999999999999999999999999999999
Q ss_pred eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125 305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~ 323 (385)
|++++.||++ |++|||++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 9999988865 689999999
Q ss_pred CCchHHHHHHHHHH
Q psy125 324 YNFEKPFLWLARKL 337 (385)
Q Consensus 324 ~~v~~~f~~l~~~i 337 (385)
.||+++|.+|++..
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999999764
No 234
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.83 E-value=2.2e-19 Score=149.77 Aligned_cols=154 Identities=18% Similarity=0.331 Sum_probs=112.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.++|+++|++|||||||++++.+..+ ..+.++.|.+...... .+..+.+||++|...+...+..++.++++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~~~i~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNIKTVQS----DGFKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 4578999999999999999999776543 3455666655433322 3578899999999877777778889999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHhc-----CCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-----NLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l 159 (385)
+|+|+.+..++.....++..+.. ...+.|+++++||+|+.......+..+..... ..+++++||+++.|++++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~ 166 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEG 166 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHH
Confidence 99999998877666655555443 12468999999999986543222222221111 124789999999999999
Q ss_pred HHHHHH
Q psy125 160 FLWLAR 165 (385)
Q Consensus 160 ~~~i~~ 165 (385)
+.+|++
T Consensus 167 ~~~l~~ 172 (173)
T cd04155 167 MNWVCK 172 (173)
T ss_pred HHHHhc
Confidence 999875
No 235
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.83 E-value=3.4e-20 Score=153.17 Aligned_cols=113 Identities=28% Similarity=0.588 Sum_probs=102.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC--ccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
+||+++|.+|||||+|++++..+ .|...+.++.|.++....+.++ +..+.+.+|||||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999998754 6888999999988877777665 56789999999999999999999999999999
Q ss_pred EEEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 302 IMFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 302 lv~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
+|||++++.||++ |++|||++|.||+++|.+|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 9999999999875 78999999999999999999
Q ss_pred HHH
Q psy125 335 RKL 337 (385)
Q Consensus 335 ~~i 337 (385)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04101 161 RAF 163 (164)
T ss_pred HHh
Confidence 875
No 236
>KOG0073|consensus
Probab=99.83 E-value=2.9e-19 Score=138.22 Aligned_cols=158 Identities=20% Similarity=0.346 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||.++|..|+||||++++|++ .......|+.|.......+ ..+.+++||.+|+...+..|.+|+.+.|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~-~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLG-EDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcC-CCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 3479999999999999999999555 4466677777766555544 6899999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhh---h---HHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKV---K---AKSIVFHRKKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~---~---~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (385)
+|+|..++..++.....+..+.. .....|+++++||.|+...-. . .....+.+....+++.||+.+|.+..+
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence 99999999888876666655544 345689999999999873221 1 223344566677999999999999999
Q ss_pred HHHHHHHHHhc
Q psy125 159 PFLWLARKLIG 169 (385)
Q Consensus 159 l~~~i~~~l~~ 169 (385)
-+.+++..+..
T Consensus 169 gidWL~~~l~~ 179 (185)
T KOG0073|consen 169 GIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 237
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.83 E-value=4.7e-20 Score=159.34 Aligned_cols=117 Identities=20% Similarity=0.322 Sum_probs=102.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccc-cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccc-cCcEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI-QGQCAII 302 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-~~~~~il 302 (385)
+||+++|.+|||||+|+++|+.+.+. ..+.++.+.++..+.+.+++..+.+.+|||+|++ ..+...+++ ++|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 48999999999999999999888887 7788887767777888888888999999999998 334456777 9999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|||++++.||++ |+||||++|.||+++|.++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999986 7999999999999999999
Q ss_pred HHHHhcCCCc
Q psy125 334 ARKLIGDPNL 343 (385)
Q Consensus 334 ~~~i~~~~~~ 343 (385)
++++......
T Consensus 159 ~~~~~~~~~~ 168 (221)
T cd04148 159 VRQIRLRRDS 168 (221)
T ss_pred HHHHHhhhcc
Confidence 9999754443
No 238
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.83 E-value=6.6e-20 Score=151.00 Aligned_cols=113 Identities=34% Similarity=0.633 Sum_probs=104.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|.+|||||++++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+..+...+++++|++|+||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988888888999998888887778888889999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|++++.||+. |+++||++|.|++++|.++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999877 8999999999999999999875
Q ss_pred H
Q psy125 337 L 337 (385)
Q Consensus 337 i 337 (385)
+
T Consensus 161 ~ 161 (161)
T cd01863 161 I 161 (161)
T ss_pred C
Confidence 3
No 239
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.83 E-value=4.8e-20 Score=154.97 Aligned_cols=114 Identities=24% Similarity=0.311 Sum_probs=99.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEe-CCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
.+||+++|.+|||||++++++..+.+... .+|.|.+.....+.. ++..+.+.+|||||++++..++..++++++++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 47999999999999999999998887654 577777766665554 3467889999999999999999999999999999
Q ss_pred EEeCCChhhhhh-----------------------------------------------------hheeccccCCCchHH
Q psy125 303 MFDVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 303 v~d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
|||++++.+|++ +++|||++|.||+++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 999999988765 468999999999999
Q ss_pred HHHHHHHHh
Q psy125 330 FLWLARKLI 338 (385)
Q Consensus 330 f~~l~~~i~ 338 (385)
|.+|++.+.
T Consensus 162 ~~~l~~~l~ 170 (183)
T cd04152 162 LEKLYEMIL 170 (183)
T ss_pred HHHHHHHHH
Confidence 999999886
No 240
>KOG1423|consensus
Probab=99.82 E-value=1.1e-18 Score=148.94 Aligned_cols=226 Identities=17% Similarity=0.193 Sum_probs=164.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------------c
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------------L 74 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------------~ 74 (385)
.+.++|++||.||||||||.|.+++ .....++....+|+......+..+...+.++||||.-.-.. -
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig-~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIG-QKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhC-CccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 5689999999999999999999665 44556677788899999999999999999999999532111 1
Q ss_pred hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh-------------H-HHHHHHHh
Q psy125 75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-------------A-KSIVFHRK 140 (385)
Q Consensus 75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~-------------~-~~~~~~~~ 140 (385)
....+..+|++++|+|+++....-. ...+..+ ....++|-++|.||+|....... . ...++...
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l-~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHML-EEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHH-HHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 2334567999999999996322211 1122222 23368999999999997543220 0 01111111
Q ss_pred ----c-------------CCeEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 141 ----K-------------NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 141 ----~-------------~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
. ...+|.+||.+|+|++++.++|....... ||-++.....+...+....+.+++.
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g--------pW~y~a~i~T~~s~e~l~~e~VRek 298 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG--------PWKYPADIVTEESPEFLCSESVREK 298 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC--------CCCCCcccccccCHHHHHHHHHHHH
Confidence 1 12589999999999999999999887544 7788888999999999999999999
Q ss_pred HHhcCCCCchhhhhh-------------------cCCCCeeEEEEECCCCCCHHHHHHH
Q psy125 204 QETALPDDDEDLMAA-------------------EMDMPSFKCVLVGDGGTGKTTFVKR 243 (385)
Q Consensus 204 ~~~~~~~~~~~~~~~-------------------~~~~~~~~i~~~G~~~vgks~~~~~ 243 (385)
....++++.||.... .......+.+++|..|.--+.+..+
T Consensus 299 lLd~~pqEVPY~lq~~i~~w~e~~~g~l~I~~~v~~pK~s~~klliGkgG~ki~qI~~~ 357 (379)
T KOG1423|consen 299 LLDHLPQEVPYNLQVRILSWKERPAGVLFIQVEVVCPKNSQKKLLIGKGGKKISQIGTR 357 (379)
T ss_pred HHhhCccccCcceEEEEEEeeecCCcEEEEEEEEEcCCCcceeEEEcCCCccHHHHHHH
Confidence 999999999875431 1123467889999988655555544
No 241
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=4.5e-19 Score=164.18 Aligned_cols=185 Identities=17% Similarity=0.085 Sum_probs=136.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-EEEEEEeCCCcccccc-------chhhhhccC
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQEKFGG-------LRDGYYIQG 82 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-~~~~i~Dt~g~~~~~~-------~~~~~~~~~ 82 (385)
.|+|||.+|||||||+|+|...+ ..+++.+++|+.+....+.... ..+.++||||...... .....+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 78999999999999999976543 3677888889888877665543 5699999999754221 112346789
Q ss_pred cEEEEEEeCC---ChhhhhcHHHHHHHHHHh---cCCCCEEEEEeCCCCcchhhhH-HHHHHHHhcC--CeEEEEcCCCC
Q psy125 83 QCAIIMFDVT---SRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKVKA-KSIVFHRKKN--LQYYDISAKSN 153 (385)
Q Consensus 83 d~illV~d~~---~~~~~~~~~~~~~~l~~~---~~~~~~ilv~nK~Dl~~~~~~~-~~~~~~~~~~--~~~~~~Sa~~~ 153 (385)
+++++|+|++ +...++....|+.++... ..+.|+++|+||+|+....... ....+..... ..++.+||+++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 9999999988 334445555566655543 2468999999999986543322 2222333322 36899999999
Q ss_pred CChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125 154 YNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE 205 (385)
Q Consensus 154 ~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~ 205 (385)
.|+++++..|...+... +++++++...|...+..+.+++++.+.
T Consensus 319 ~GIdeLl~~I~~~L~~~--------~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 319 LGVKELCWDLMTFIEEN--------PREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred cCHHHHHHHHHHHhhhC--------cccCCcccccCccHHHHHHHHHHHHhh
Confidence 99999999999987654 457888888898889999999988865
No 242
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.82 E-value=1.1e-19 Score=151.29 Aligned_cols=116 Identities=31% Similarity=0.667 Sum_probs=107.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||++++++..+.+...+.++++.++....+.+.+..+.+.+|||||++.+..++..++++++++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888899888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhhhh-----------------------------------------------------hheeccccCCCchHHHH
Q psy125 305 DVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKPFL 331 (385)
Q Consensus 305 d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~f~ 331 (385)
|++++.+|++ ++++||++|.||+++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 9999988764 89999999999999999
Q ss_pred HHHHHHhcC
Q psy125 332 WLARKLIGD 340 (385)
Q Consensus 332 ~l~~~i~~~ 340 (385)
++++.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988775
No 243
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.82 E-value=1.2e-19 Score=149.87 Aligned_cols=115 Identities=35% Similarity=0.750 Sum_probs=106.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|+|||+++++++...+...+.++.+.++....+..++..+.+.+|||||++++..++..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988888888899988888888888888889999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|++++.+|+. |+|+||++|.|++++|.+|+++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999976 8999999999999999999998
Q ss_pred Hhc
Q psy125 337 LIG 339 (385)
Q Consensus 337 i~~ 339 (385)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 854
No 244
>KOG4252|consensus
Probab=99.81 E-value=7.9e-21 Score=148.70 Aligned_cols=162 Identities=30% Similarity=0.559 Sum_probs=146.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+|++++|..++||||++.+++.+-|...+..++|+.+......+....+...+|||+|++.+..+...|++++++.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 35899999999999999999999999999999999998888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
||+-+|..+|+.+..|+..+....+.+|.++|-||+|+.++.. ..+...+++....+++.+|++...++...|.+|+.
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLae 178 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAE 178 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 9999999999999999999998889999999999999976544 34455677778889999999999999999999998
Q ss_pred HHhc
Q psy125 166 KLIG 169 (385)
Q Consensus 166 ~l~~ 169 (385)
.+.+
T Consensus 179 K~~q 182 (246)
T KOG4252|consen 179 KLTQ 182 (246)
T ss_pred HHHH
Confidence 8744
No 245
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.81 E-value=2.5e-18 Score=140.73 Aligned_cols=155 Identities=28% Similarity=0.503 Sum_probs=116.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+||+++|.+|+|||||+++++.+.+...+.++.+.+............+.+.+||+||+..+...+..+..+++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999988886555555555555554455555558899999999988888888888899999999
Q ss_pred EeCCCh-hhhhcHH-HHHHHHHHhcC-CCCEEEEEeCCCCcchhhhHHHH-HHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 89 FDVTSR-ITYKNVP-NWHRDLVRVCE-NIPIVLCGNKVDIKDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 89 ~d~~~~-~~~~~~~-~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|+... .++.... .|...+..... +.|+++++||.|+.......... .+......+++++||.++.|+.+++..|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 998776 5555443 55555555434 78999999999987643222222 2333445689999999999999998875
No 246
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.81 E-value=1e-18 Score=144.19 Aligned_cols=154 Identities=15% Similarity=0.055 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCc-ccccceeeeEEEEEEeCCe-eEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKK-YVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~-~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.|+++|++|||||||+|+|.+...... .....+.|........... ...+.+|||||++.+......++.++|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 3689999999999999999775321110 0111233333222222222 5689999999998776656667889999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHHh---cCCeEEEEcCCCCCChHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHRK---KNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~ 160 (385)
|+|+++....+. ...+..+ ......|+++++||+|+..... ..+..+.... ...+++++|++++.|+++++
T Consensus 81 V~d~~~~~~~~~-~~~~~~~-~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 158 (164)
T cd04171 81 VVAADEGIMPQT-REHLEIL-ELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELK 158 (164)
T ss_pred EEECCCCccHhH-HHHHHHH-HHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHH
Confidence 999987321111 1111112 1223348999999999865421 2233333333 35689999999999999998
Q ss_pred HHHHH
Q psy125 161 LWLAR 165 (385)
Q Consensus 161 ~~i~~ 165 (385)
..+.+
T Consensus 159 ~~l~~ 163 (164)
T cd04171 159 EYLDE 163 (164)
T ss_pred HHHhh
Confidence 88754
No 247
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.81 E-value=1.5e-19 Score=149.54 Aligned_cols=112 Identities=21% Similarity=0.360 Sum_probs=97.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc-cCcccccccccCcEEEEEE
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~~~~ilv~ 304 (385)
||+++|.+|||||+|+++++.+.|...+.++.+..+ ...+.+++..+.+.+|||||+++ +......+++++|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999999888888888875444 45567788888999999999986 3456677999999999999
Q ss_pred eCCChhhhhh--------------------------------------------------hheeccccC-CCchHHHHHH
Q psy125 305 DVTSRITYKN--------------------------------------------------YYDISAKSN-YNFEKPFLWL 333 (385)
Q Consensus 305 d~~~~~s~~~--------------------------------------------------~~e~Sak~~-~~v~~~f~~l 333 (385)
|++++.||++ |+||||++| .||+++|.+|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999985 899999999 5999999999
Q ss_pred HHHHh
Q psy125 334 ARKLI 338 (385)
Q Consensus 334 ~~~i~ 338 (385)
++++.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 99774
No 248
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=3.5e-19 Score=147.92 Aligned_cols=114 Identities=38% Similarity=0.636 Sum_probs=104.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+|++++|.+|||||++++++..+.+...+.++++.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 86 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILT 86 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999988888888888888888777788888888899999999999999989999999999999
Q ss_pred EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
||++++.+|+. |++|||++|.|++++|.+|++
T Consensus 87 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 87 YDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999865 789999999999999999998
Q ss_pred HH
Q psy125 336 KL 337 (385)
Q Consensus 336 ~i 337 (385)
.+
T Consensus 167 ~~ 168 (169)
T cd04114 167 RL 168 (169)
T ss_pred Hh
Confidence 75
No 249
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=1.1e-18 Score=158.55 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=116.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC-eeEEEEEEeCCCccccc----cchh---hhhccC
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFG----GLRD---GYYIQG 82 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~----~~~~---~~~~~~ 82 (385)
.|+|||.+|||||||+|+|.... +.+.+.+++|..+....+.. ....+.+||+||..... .+.. ..+..+
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 68999999999999999966533 34566677788777766554 45679999999974321 1222 245679
Q ss_pred cEEEEEEeCCChhhhhcHHHHHHHHHHhc---CCCCEEEEEeCCCCcchhh-hH-HHHHHHHhcCCeEEEEcCCCCCChH
Q psy125 83 QCAIIMFDVTSRITYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKV-KA-KSIVFHRKKNLQYYDISAKSNYNFE 157 (385)
Q Consensus 83 d~illV~d~~~~~~~~~~~~~~~~l~~~~---~~~~~ilv~nK~Dl~~~~~-~~-~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (385)
+++++|+|+++..+++....|..++.... .++|+++|+||+|+..... .. ....+......+++++||+++.|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 99999999998777777777877776532 4689999999999865432 21 2222334445789999999999999
Q ss_pred HHHHHHHHHHhc
Q psy125 158 KPFLWLARKLIG 169 (385)
Q Consensus 158 ~l~~~i~~~l~~ 169 (385)
+++.+|.+.+..
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 250
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=1.8e-19 Score=153.44 Aligned_cols=113 Identities=26% Similarity=0.415 Sum_probs=101.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 305 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 305 (385)
||+++|.+|||||+++++++.+.+...+.++.+ +.....+.+.+..+.+.||||+|+..|..++..++.++|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999999888888875 4555667777777899999999999999999999999999999999
Q ss_pred CCChhhhhh---------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 306 VTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 306 ~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
++++.+|++ |+++||++|.||+++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 999999885 58999999999999999999
Q ss_pred HHHhc
Q psy125 335 RKLIG 339 (385)
Q Consensus 335 ~~i~~ 339 (385)
+.+..
T Consensus 160 ~~~~~ 164 (198)
T cd04147 160 RQANL 164 (198)
T ss_pred HHhhc
Confidence 98753
No 251
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.80 E-value=4.2e-19 Score=146.18 Aligned_cols=113 Identities=33% Similarity=0.580 Sum_probs=102.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|.+|||||+++++++.+.+...+.++.+.+.....+...+..+.+.+|||+|++.+..+++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988887777777766776777777777788999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|++++.+|+. ++++||++|.|++++|.++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999875 7899999999999999999987
Q ss_pred H
Q psy125 337 L 337 (385)
Q Consensus 337 i 337 (385)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 6
No 252
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.80 E-value=9.6e-19 Score=147.62 Aligned_cols=118 Identities=28% Similarity=0.398 Sum_probs=103.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
.|++++|++|+|||+|++++..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+....+.++++++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 58999999999999999999888888888888755543 35566777788999999999999888888899999999999
Q ss_pred eCCChhhhhh-----------------------------------------------------------hheeccccCCC
Q psy125 305 DVTSRITYKN-----------------------------------------------------------YYDISAKSNYN 325 (385)
Q Consensus 305 d~~~~~s~~~-----------------------------------------------------------~~e~Sak~~~~ 325 (385)
|++++.||++ |+||||++|.|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 160 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG 160 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence 9999999986 79999999999
Q ss_pred chHHHHHHHHHHhcCCCc
Q psy125 326 FEKPFLWLARKLIGDPNL 343 (385)
Q Consensus 326 v~~~f~~l~~~i~~~~~~ 343 (385)
|+++|.+++++++.....
T Consensus 161 v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 161 VDDVFEAATRAALLVRKS 178 (187)
T ss_pred HHHHHHHHHHHHhcccCc
Confidence 999999999988776544
No 253
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.80 E-value=2.1e-18 Score=147.75 Aligned_cols=154 Identities=17% Similarity=0.110 Sum_probs=105.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC-eeEEEEEEeCCCcccccc--c------hhhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGG--L------RDGY 78 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~~--~------~~~~ 78 (385)
+.++|+|+|++|||||||+|++++...... ...+.|.......... +...+.+|||||...... . ....
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 357999999999999999999887653222 1122232222222222 223789999999732111 0 1112
Q ss_pred hccCcEEEEEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125 79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFE 157 (385)
Q Consensus 79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (385)
+..+|++++|+|++++..+.....|...+... ..+.|+++|+||+|+....... ........+++++||+++.|++
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi~ 194 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEGLD 194 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCCHH
Confidence 56899999999999987776655555555442 2468999999999986543322 3344556689999999999999
Q ss_pred HHHHHHHHH
Q psy125 158 KPFLWLARK 166 (385)
Q Consensus 158 ~l~~~i~~~ 166 (385)
+++.+|...
T Consensus 195 ~l~~~L~~~ 203 (204)
T cd01878 195 ELLEAIEEL 203 (204)
T ss_pred HHHHHHHhh
Confidence 999998765
No 254
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.79 E-value=2e-19 Score=148.35 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=75.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeC
Q psy125 227 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 306 (385)
Q Consensus 227 i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~ 306 (385)
|+++|.+|||||+++++|..+.+...+.+|+|... ..++...+.+.+|||+|+++|+.++..|++++|++|+|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999998888888999987643 23455678899999999999999999999999999999999
Q ss_pred CChhhhhh
Q psy125 307 TSRITYKN 314 (385)
Q Consensus 307 ~~~~s~~~ 314 (385)
+++.+|.+
T Consensus 78 t~~~s~~~ 85 (164)
T cd04162 78 ADSERLPL 85 (164)
T ss_pred CCHHHHHH
Confidence 99988875
No 255
>KOG0070|consensus
Probab=99.79 E-value=1.9e-18 Score=137.73 Aligned_cols=158 Identities=25% Similarity=0.386 Sum_probs=128.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
....+|+++|--||||||+++.+-.+..... .||.|.......+ +++.+.+||.+|+.+++..+..|+.+.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 5678999999999999999999666665555 8999988888777 4899999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhhhHHHH---HHHHhc--CCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI---VFHRKK--NLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~~~~~~---~~~~~~--~~~~~~~Sa~~~~gi~~l 159 (385)
+|+|.++++.+......+..+.... .+.|+++++||.|+...-...++. .+.... ...+..++|.+|+|+.+-
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHH
Confidence 9999999998877776666665533 478999999999987654433322 222222 336778899999999999
Q ss_pred HHHHHHHHhc
Q psy125 160 FLWLARKLIG 169 (385)
Q Consensus 160 ~~~i~~~l~~ 169 (385)
++++...+..
T Consensus 170 l~wl~~~~~~ 179 (181)
T KOG0070|consen 170 LDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHhc
Confidence 9999887643
No 256
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.79 E-value=1.1e-18 Score=140.50 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=93.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc-----ccccchhhhhccCcEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE-----KFGGLRDGYYIQGQCA 85 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~-----~~~~~~~~~~~~~d~i 85 (385)
||+++|++|||||||+|+|.++.+. +.++.+... .-.+|||||.. .+..+. ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~------------~~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY------------NDGAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE------------cCeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 8999999999999999998776532 222322111 11679999973 222222 347899999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i 163 (385)
++|+|++++.++.. ..|... ...|+++++||+|+.+... ......+....+. +++++||+++.|+++++.++
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASI-----FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHh-----ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 99999999988765 234332 1349999999999865322 2333445555554 79999999999999999887
Q ss_pred H
Q psy125 164 A 164 (385)
Q Consensus 164 ~ 164 (385)
+
T Consensus 141 ~ 141 (142)
T TIGR02528 141 N 141 (142)
T ss_pred h
Confidence 4
No 257
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.79 E-value=2.2e-18 Score=146.25 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=104.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------cccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchh
Q psy125 11 KCVLVGDGGTGKTTFVKRHLT--GEFEKKY------------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD 76 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~--~~~~~~~------------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~ 76 (385)
+|+++|.+|+|||||+++|+. +.+.... ..+.|.+..........+.+.+.+|||||+.++.....
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 899999999999999999886 4443322 23466777666666677789999999999998888888
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHH-------hcCCeEE
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHR-------KKNLQYY 146 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~-------~~~~~~~ 146 (385)
.+++++|++++|+|+++.. +.....++..+.. .+.|+++|+||+|+..... ..+...++. ..+.+++
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 160 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVL 160 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEE
Confidence 8999999999999998742 1222233333322 4789999999999864322 223333331 2256899
Q ss_pred EEcCCCCCChH
Q psy125 147 DISAKSNYNFE 157 (385)
Q Consensus 147 ~~Sa~~~~gi~ 157 (385)
.+||++|.|+.
T Consensus 161 ~~Sa~~g~~~~ 171 (194)
T cd01891 161 YASAKNGWASL 171 (194)
T ss_pred Eeehhcccccc
Confidence 99999998774
No 258
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.79 E-value=3.1e-19 Score=147.12 Aligned_cols=107 Identities=25% Similarity=0.477 Sum_probs=91.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc-cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|+++|.+|||||++++++..+. +...+.+|+|.+.... ....+.+.+|||||++++..++..|+++++++|+||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 48999999999999999988765 4667888888654332 234678899999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------------hheeccccCCCchHHH
Q psy125 305 DVTSRITYKN------------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|++++.+|.. |++|||++|.||+++|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 9999987632 5789999999999999
Q ss_pred HHHHHH
Q psy125 331 LWLARK 336 (385)
Q Consensus 331 ~~l~~~ 336 (385)
.+|+++
T Consensus 157 ~~l~~~ 162 (162)
T cd04157 157 QWLQAQ 162 (162)
T ss_pred HHHhcC
Confidence 999753
No 259
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.79 E-value=4.4e-19 Score=147.83 Aligned_cols=108 Identities=21% Similarity=0.400 Sum_probs=92.1
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+|++++|.+|||||++++++... +...+.+|+|.... .+..+ .+.+.+|||||++.++.++..+++++|++++
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIK--TLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4589999999999999999998866 44567788774443 33333 5778999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||++++.+|++ |++|||++|.||+++|
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHH
Confidence 999999988866 7899999999999999
Q ss_pred HHHHH
Q psy125 331 LWLAR 335 (385)
Q Consensus 331 ~~l~~ 335 (385)
.+++.
T Consensus 168 ~~l~~ 172 (173)
T cd04154 168 DWLVD 172 (173)
T ss_pred HHHhc
Confidence 99874
No 260
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.79 E-value=1.1e-18 Score=144.04 Aligned_cols=114 Identities=30% Similarity=0.523 Sum_probs=102.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+||||||++++++.+.+...+.++.+.. ..+....++..+.+.+|||||+..+..++..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999999888888887544 3455677888899999999999999999999999999999999
Q ss_pred eCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 305 DVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 305 d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
|++++.||++ |+++||++|.||+++|.++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999876 799999999999999999998
Q ss_pred HHhc
Q psy125 336 KLIG 339 (385)
Q Consensus 336 ~i~~ 339 (385)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 8753
No 261
>PTZ00099 rab6; Provisional
Probab=99.78 E-value=1.1e-17 Score=138.93 Aligned_cols=140 Identities=29% Similarity=0.535 Sum_probs=117.9
Q ss_pred CCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhc
Q psy125 32 GEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC 111 (385)
Q Consensus 32 ~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~ 111 (385)
+.|.+.+.++.|.++.......+.+.+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45667788999988887777888889999999999999999999999999999999999999999999989998876643
Q ss_pred -CCCCEEEEEeCCCCcchh--hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhcCC
Q psy125 112 -ENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 171 (385)
Q Consensus 112 -~~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~ 171 (385)
.+.|+++|+||+|+...+ ...+...+.......++++||+++.|++++|.+|++.+...+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 568899999999986432 233445566666778999999999999999999999986643
No 262
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=2.5e-18 Score=146.91 Aligned_cols=159 Identities=21% Similarity=0.144 Sum_probs=102.1
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCc-----------c
Q psy125 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ-----------E 69 (385)
Q Consensus 1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~-----------~ 69 (385)
|-.+...+.++|+++|++|||||||+|+|.+..+. ....+|+|+........ .+.+|||||. +
T Consensus 1 ~~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~ 74 (201)
T PRK04213 1 MFETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVR--VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQE 74 (201)
T ss_pred CCcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHH
Confidence 33344456789999999999999999998876643 33445777765544332 5899999994 3
Q ss_pred ccccchhhhhc----cCcEEEEEEeCCChhhhhc---------H-HHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHH
Q psy125 70 KFGGLRDGYYI----QGQCAIIMFDVTSRITYKN---------V-PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSI 135 (385)
Q Consensus 70 ~~~~~~~~~~~----~~d~illV~d~~~~~~~~~---------~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~ 135 (385)
.++..+..++. .++++++|+|.++...... . ..+...+. ..+.|+++|+||+|+.... .....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~p~iiv~NK~Dl~~~~-~~~~~ 151 (201)
T PRK04213 75 KIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR--ELGIPPIVAVNKMDKIKNR-DEVLD 151 (201)
T ss_pred HHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH--HcCCCeEEEEECccccCcH-HHHHH
Confidence 33333333433 4567888888765432200 0 11122222 1478999999999986543 11222
Q ss_pred HHHHhcC---------CeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 136 VFHRKKN---------LQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 136 ~~~~~~~---------~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
++....+ .+++++||+++ |+++++.+|++.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 152 EIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 2323222 25799999999 999999999987643
No 263
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.78 E-value=5.8e-18 Score=138.58 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhhcc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYIQ 81 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~~~ 81 (385)
++|+++|++|+|||||++++++.. .....+..+++..............+.+|||||....... ....+.+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRD-RAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCc-eEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 589999999999999999977654 3333445566655554444445678899999997654321 2245678
Q ss_pred CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125 82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (385)
+|++++|+|++++.+......+.. ..+.|+++++||+|+...... .......+++++|++++.|+++++.
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHH
Confidence 999999999998766554332222 357899999999998754332 3344567899999999999999999
Q ss_pred HHHHHH
Q psy125 162 WLARKL 167 (385)
Q Consensus 162 ~i~~~l 167 (385)
+|...+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 987753
No 264
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=8.1e-19 Score=146.31 Aligned_cols=107 Identities=29% Similarity=0.486 Sum_probs=92.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|.+|||||++++++..+.+.. +.+|+|.++.... . ..+.+.+|||||++++...+..+++++|++|+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIV--Y--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEE--E--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999998888765 5788876654332 2 357789999999999999999999999999999
Q ss_pred EeCCChhhhhh----------------------------------------------------hheeccccCCCchHHHH
Q psy125 304 FDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFL 331 (385)
Q Consensus 304 ~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~ 331 (385)
||++++.+|.. +++|||++|.||+++|.
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~ 169 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLD 169 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHH
Confidence 99999988764 57899999999999999
Q ss_pred HHHH
Q psy125 332 WLAR 335 (385)
Q Consensus 332 ~l~~ 335 (385)
+|++
T Consensus 170 ~l~~ 173 (174)
T cd04153 170 WIAS 173 (174)
T ss_pred HHhc
Confidence 9975
No 265
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.78 E-value=5.4e-18 Score=147.98 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=115.5
Q ss_pred cccccchhhhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEE
Q psy125 69 EKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYY 146 (385)
Q Consensus 69 ~~~~~~~~~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~ 146 (385)
+++..+.+.+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+..... ..+....+...++.++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~ 101 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL 101 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence 566667778999999999999999877 78888888876543 6899999999999965333 2233445556778999
Q ss_pred EEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeE
Q psy125 147 DISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFK 226 (385)
Q Consensus 147 ~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (385)
.+||+++.|+++++..+.. -.
T Consensus 102 ~~SAktg~gi~eLf~~l~~-----------------------------------------------------------~~ 122 (245)
T TIGR00157 102 MTSSKNQDGLKELIEALQN-----------------------------------------------------------RI 122 (245)
T ss_pred EEecCCchhHHHHHhhhcC-----------------------------------------------------------CE
Confidence 9999999999988865432 14
Q ss_pred EEEECCCCCCHHHHHHHHhcCc------cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125 227 CVLVGDGGTGKTTFVKRHLTGE------FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287 (385)
Q Consensus 227 i~~~G~~~vgks~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 287 (385)
++++|.+|||||||+|.++... .........++|.....+.+.+ + .|+||||...+.
T Consensus 123 ~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~-~---~liDtPG~~~~~ 185 (245)
T TIGR00157 123 SVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG-G---LIADTPGFNEFG 185 (245)
T ss_pred EEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC-c---EEEeCCCccccC
Confidence 7899999999999999987442 2222233344777777777743 3 699999986654
No 266
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.78 E-value=1.8e-18 Score=143.21 Aligned_cols=113 Identities=18% Similarity=0.273 Sum_probs=95.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
.|++++|.+|||||+|++++..+.|...+..+.. . .......++..+.+.+|||||++++...+..+++++|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-E-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-c-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 3899999999999999999999888766554322 2 2344455667788999999999988887778889999999999
Q ss_pred eCCChhhhhh----------------------------------------------------hheeccccCCCchHHHHH
Q psy125 305 DVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 305 d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|++++.||++ |+||||++|.||+++|..
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 9999999875 779999999999999999
Q ss_pred HHHHHhc
Q psy125 333 LARKLIG 339 (385)
Q Consensus 333 l~~~i~~ 339 (385)
+++.++.
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9988764
No 267
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=144.31 Aligned_cols=164 Identities=34% Similarity=0.547 Sum_probs=130.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
+..+||+++|+.|||||||+++|..+.+...+.++.+..............+.+.+|||+|++.++.++..++.++++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 34589999999999999999999999999888888887777776666666899999999999999999999999999999
Q ss_pred EEEeCCChhh-hhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhhhH--------------HHHHHHHh---cCCeEEE
Q psy125 87 IMFDVTSRIT-YKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVKA--------------KSIVFHRK---KNLQYYD 147 (385)
Q Consensus 87 lV~d~~~~~~-~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~~~--------------~~~~~~~~---~~~~~~~ 147 (385)
+|+|..+..+ .+....|...+.... ...|+++++||+|+....... ........ ....+++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 9999999554 455667888877755 368999999999997653211 11111111 1234899
Q ss_pred EcCC--CCCChHHHHHHHHHHHhcC
Q psy125 148 ISAK--SNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 148 ~Sa~--~~~gi~~l~~~i~~~l~~~ 170 (385)
+|++ .+.++.+++..+.+.+...
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHHh
Confidence 9999 9999999999988887543
No 268
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.78 E-value=3.6e-18 Score=142.06 Aligned_cols=110 Identities=32% Similarity=0.496 Sum_probs=97.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+|++++|.+|||||++++++..+.+...+.++.. +........++..+.+.+|||||++++......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988777777775 334455667788889999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------------------hheeccccCC
Q psy125 305 DVTSRITYKN------------------------------------------------------------YYDISAKSNY 324 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------------------~~e~Sak~~~ 324 (385)
|++++.||.. |+++||++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999876 7999999999
Q ss_pred CchHHHHHHHH
Q psy125 325 NFEKPFLWLAR 335 (385)
Q Consensus 325 ~v~~~f~~l~~ 335 (385)
|++++|.+|++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999876
No 269
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.77 E-value=3.3e-18 Score=142.91 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=104.9
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccc----cccch---hhhhccCcEE
Q psy125 14 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEK----FGGLR---DGYYIQGQCA 85 (385)
Q Consensus 14 lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~----~~~~~---~~~~~~~d~i 85 (385)
++|++|||||||+|+|.+... ......+.|..+........ ...+.+|||||... ...+. ...+.++|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999877654 23344455555444444444 67889999999732 12222 3346789999
Q ss_pred EEEEeCCCh------hhhhcHHHHHHHHHHhc--------CCCCEEEEEeCCCCcchhhhHHH--HHHHHhcCCeEEEEc
Q psy125 86 IIMFDVTSR------ITYKNVPNWHRDLVRVC--------ENIPIVLCGNKVDIKDRKVKAKS--IVFHRKKNLQYYDIS 149 (385)
Q Consensus 86 llV~d~~~~------~~~~~~~~~~~~l~~~~--------~~~~~ilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~S 149 (385)
++|+|+++. ..+.....|...+.... .+.|+++|+||+|+......... ..........++.+|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 35555555555554321 47899999999998755443322 223344566899999
Q ss_pred CCCCCChHHHHHHHHHH
Q psy125 150 AKSNYNFEKPFLWLARK 166 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~ 166 (385)
++++.|+++++..+.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999988654
No 270
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.77 E-value=7.9e-18 Score=158.63 Aligned_cols=152 Identities=22% Similarity=0.255 Sum_probs=113.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYY 79 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~ 79 (385)
..++|+++|++|||||||+|+|++.. ...+.+.+|+|++........+++.+.+|||||+...... ...++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~-~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQD-RAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC-CcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 45899999999999999999977643 3345567788888776666666788899999998543321 23567
Q ss_pred ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125 80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (385)
.++|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... ....+....+.+++.+|+++ .|+++.
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~~ 351 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKAL 351 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHHH
Confidence 899999999999988776543 5554432 47899999999998643 11223444556789999998 588998
Q ss_pred HHHHHHHHhc
Q psy125 160 FLWLARKLIG 169 (385)
Q Consensus 160 ~~~i~~~l~~ 169 (385)
+..+.+.+..
T Consensus 352 ~~~L~~~i~~ 361 (442)
T TIGR00450 352 VDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHH
Confidence 8888887754
No 271
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.77 E-value=5.3e-18 Score=155.40 Aligned_cols=152 Identities=17% Similarity=0.116 Sum_probs=104.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC-eeEEEEEEeCCCcccc--ccc------hhhhh
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKF--GGL------RDGYY 79 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~--~~~------~~~~~ 79 (385)
.++|+|+|.+|||||||+|+|++... .....++.|++........ ++..+.+|||+|.... ... ....+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~--~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADV--YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCce--eeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 37999999999999999999777542 2234445555544433333 3468899999997221 111 12246
Q ss_pred ccCcEEEEEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125 80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (385)
.++|++++|+|++++........|...+... ..+.|+++|+||+|+....... .......+++.+||+++.|+++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~----~~~~~~~~~i~iSAktg~GI~e 342 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE----RLEEGYPEAVFVSAKTGEGLDL 342 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHH----HHHhCCCCEEEEEccCCCCHHH
Confidence 7899999999999987766555554444432 2478999999999986532211 1112234689999999999999
Q ss_pred HHHHHHHH
Q psy125 159 PFLWLARK 166 (385)
Q Consensus 159 l~~~i~~~ 166 (385)
++..|...
T Consensus 343 L~~~I~~~ 350 (351)
T TIGR03156 343 LLEAIAER 350 (351)
T ss_pred HHHHHHhh
Confidence 99988764
No 272
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.77 E-value=1.3e-18 Score=143.97 Aligned_cols=105 Identities=21% Similarity=0.304 Sum_probs=91.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 305 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 305 (385)
+|+++|.+|||||++++++... +...+.+|+|.+.. .+.. ..+.+.+|||||+++++.++..|++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 3799999999999999997754 77888999887643 3333 45778999999999999999999999999999999
Q ss_pred CCChhhhhh-------------------------------------------------------hheeccccC------C
Q psy125 306 VTSRITYKN-------------------------------------------------------YYDISAKSN------Y 324 (385)
Q Consensus 306 ~~~~~s~~~-------------------------------------------------------~~e~Sak~~------~ 324 (385)
++++.+|++ +++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999998876 677999998 8
Q ss_pred CchHHHHHHHH
Q psy125 325 NFEKPFLWLAR 335 (385)
Q Consensus 325 ~v~~~f~~l~~ 335 (385)
|++++|+||+.
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 273
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.77 E-value=1.2e-17 Score=137.03 Aligned_cols=147 Identities=16% Similarity=0.122 Sum_probs=102.9
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc------hhhhh--ccCcEE
Q psy125 14 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL------RDGYY--IQGQCA 85 (385)
Q Consensus 14 lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~------~~~~~--~~~d~i 85 (385)
|+|.+|||||||+|++.+..... .+.++.|...........+..+.+|||||+..+... ...++ .++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKV--GNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccc--cCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 58999999999999987764332 234555555443333334468999999998765542 34445 489999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
++|+|+.+.... ..+...+.. .++|+++++||+|+..... ......+....+.+++++|+.++.|+.+++..+.
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 999999875432 233333333 4789999999999865432 2223345555567899999999999999999988
Q ss_pred HHH
Q psy125 165 RKL 167 (385)
Q Consensus 165 ~~l 167 (385)
+.+
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 764
No 274
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.77 E-value=1.1e-17 Score=151.82 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-EEEEEEeCCCccccc----cchhhh---hcc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQEKFG----GLRDGY---YIQ 81 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-~~~~i~Dt~g~~~~~----~~~~~~---~~~ 81 (385)
-.|+|||.+|||||||+|+|..... .+.+.+++|..+......... ..+.+||+||+.... .+...+ +.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 3789999999999999999766432 344445556655555444333 789999999975322 222233 457
Q ss_pred CcEEEEEEeCCCh---hhhhcHHHHHHHHHHh---cCCCCEEEEEeCCCCcchhhhHHHH-HHHHhcCCeEEEEcCCCCC
Q psy125 82 GQCAIIMFDVTSR---ITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKVKAKSI-VFHRKKNLQYYDISAKSNY 154 (385)
Q Consensus 82 ~d~illV~d~~~~---~~~~~~~~~~~~l~~~---~~~~~~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~ 154 (385)
++++++|+|+++. ..++.+..|..++... ..++|+++|+||+|+.......+.. .+....+.+++++||+++.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence 9999999999976 4556666666665543 2478999999999986654333222 2333445689999999999
Q ss_pred ChHHHHHHHHHHH
Q psy125 155 NFEKPFLWLARKL 167 (385)
Q Consensus 155 gi~~l~~~i~~~l 167 (385)
|+++++..|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999988764
No 275
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.76 E-value=2.6e-17 Score=136.45 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=104.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC---eeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR---GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~---~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
.|+++|++|+|||||+|+|..+.+..... .+.|.......... ....+.+|||||+..+...+...+..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEA--GGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccC--CCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEE
Confidence 58999999999999999988776554322 23344333333332 36789999999998877777778899999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHH------hcCCeEEEEcCCCCCChHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHR------KKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~ 158 (385)
|+|+++....+.. ..+..+.. .+.|+++++||+|+..... ......+.. ....+++++|++++.|+++
T Consensus 80 v~d~~~~~~~~~~-~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 80 VVAADDGVMPQTI-EAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred EEECCCCccHHHH-HHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence 9999875322211 12222222 4789999999999864321 111111111 1135789999999999999
Q ss_pred HHHHHHHHH
Q psy125 159 PFLWLARKL 167 (385)
Q Consensus 159 l~~~i~~~l 167 (385)
++.+|.+..
T Consensus 157 l~~~l~~~~ 165 (168)
T cd01887 157 LLEAILLLA 165 (168)
T ss_pred HHHHHHHhh
Confidence 999988764
No 276
>KOG0071|consensus
Probab=99.76 E-value=1.4e-17 Score=125.34 Aligned_cols=156 Identities=22% Similarity=0.327 Sum_probs=122.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
-++++|+.+|-.++||||++..+. ........|+.|.....+.+ +++.+++||.+|+++.+.+|+.|+.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLk-l~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLK-LGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHh-cCCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 357899999999999999999944 44556677888888777766 7899999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHh---c--CCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRK---K--NLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~---~--~~~~~~~Sa~~~~gi~~l 159 (385)
||+|..+....++....+..+.+ ...+.++++.+||.|+......+++..+... . ...+.++++.++.|..+-
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 99999888766665554444433 2356788899999999887666655544332 2 235678899999999988
Q ss_pred HHHHHHHH
Q psy125 160 FLWLARKL 167 (385)
Q Consensus 160 ~~~i~~~l 167 (385)
+.++...+
T Consensus 170 lswlsnn~ 177 (180)
T KOG0071|consen 170 LSWLSNNL 177 (180)
T ss_pred HHHHHhhc
Confidence 88876653
No 277
>KOG0075|consensus
Probab=99.76 E-value=3.7e-18 Score=129.42 Aligned_cols=155 Identities=23% Similarity=0.406 Sum_probs=124.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
.+.+.++|-.++|||||+|.+..+.+.....|+.|.. ..+++.+.+.+.+||.||+..++.++..|++.++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn----mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce----eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 5789999999999999999988888888888887765 455677999999999999999999999999999999999
Q ss_pred EeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 161 (385)
+|+.++...+.....+..+.. ....+|+++++||.|+...-....+..-. ......++.+|++...+++..++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~ 175 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLD 175 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHH
Confidence 999998777655554444443 33589999999999987654433332211 12234689999999999999999
Q ss_pred HHHHHH
Q psy125 162 WLARKL 167 (385)
Q Consensus 162 ~i~~~l 167 (385)
+|.+.-
T Consensus 176 Wli~hs 181 (186)
T KOG0075|consen 176 WLIEHS 181 (186)
T ss_pred HHHHHh
Confidence 988753
No 278
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.76 E-value=1e-17 Score=130.47 Aligned_cols=114 Identities=28% Similarity=0.529 Sum_probs=88.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFE--KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~--~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV 88 (385)
||+|+|++|||||||+++|+++.+. ....+..+.+..............+.+||++|.+.+.......+.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999987766 23334455555555666677777799999999987777666778999999999
Q ss_pred EeCCChhhhhcHHH---HHHHHHHhcCCCCEEEEEeCCC
Q psy125 89 FDVTSRITYKNVPN---WHRDLVRVCENIPIVLCGNKVD 124 (385)
Q Consensus 89 ~d~~~~~~~~~~~~---~~~~l~~~~~~~~~ilv~nK~D 124 (385)
||++++.+++.+.. |+..+.....+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999987644 5555555557899999999998
No 279
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=1.3e-17 Score=136.52 Aligned_cols=148 Identities=19% Similarity=0.137 Sum_probs=103.2
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--------chhhhhccCcE
Q psy125 13 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYYIQGQC 84 (385)
Q Consensus 13 ~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------~~~~~~~~~d~ 84 (385)
+++|.+|||||||+|+|++... .......+.|+..........+..+.+|||||...... .....+.++|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD-AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE-EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 5899999999999999776542 22334556666655555555567899999999876443 22345688999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
+++|+|..+....... .....+.. .+.|+++++||+|+...... ...+......+++++|++++.|+++++..|+
T Consensus 80 ii~v~d~~~~~~~~~~-~~~~~~~~--~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (157)
T cd01894 80 ILFVVDGREGLTPADE-EIAKYLRK--SKKPVILVVNKVDNIKEEDE--AAEFYSLGFGEPIPISAEHGRGIGDLLDAIL 154 (157)
T ss_pred EEEEEeccccCCccHH-HHHHHHHh--cCCCEEEEEECcccCChHHH--HHHHHhcCCCCeEEEecccCCCHHHHHHHHH
Confidence 9999999876444322 22222222 36899999999998765433 1222233233789999999999999999988
Q ss_pred HH
Q psy125 165 RK 166 (385)
Q Consensus 165 ~~ 166 (385)
+.
T Consensus 155 ~~ 156 (157)
T cd01894 155 EL 156 (157)
T ss_pred hh
Confidence 65
No 280
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.76 E-value=5.8e-18 Score=142.09 Aligned_cols=117 Identities=25% Similarity=0.402 Sum_probs=102.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
.||+++|.+||||||+++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++++..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998888877777765443 445566777788999999999999999999999999999999
Q ss_pred eCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 305 DVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 305 d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
|++++.+|+. |+++||++|.|+.++|.++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999998766 799999999999999999999
Q ss_pred HHhcCCC
Q psy125 336 KLIGDPN 342 (385)
Q Consensus 336 ~i~~~~~ 342 (385)
.+.....
T Consensus 161 ~~~~~~~ 167 (180)
T cd04137 161 EIEKVEN 167 (180)
T ss_pred HHHHhcC
Confidence 9876543
No 281
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.76 E-value=1e-17 Score=158.90 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=112.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYY 79 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~ 79 (385)
..++|+++|.+|||||||+|+|++.. ...+.+.+|+|++........++..+.+|||||....... ...++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~-~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEE-RAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 35899999999999999999977654 3334567788877766555556678999999998654321 22367
Q ss_pred ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125 80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (385)
.++|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... .....+++.+|++++.|++++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHH
Confidence 88999999999998876654333322 3578999999999986533221 234567899999999999999
Q ss_pred HHHHHHHHhc
Q psy125 160 FLWLARKLIG 169 (385)
Q Consensus 160 ~~~i~~~l~~ 169 (385)
+..|.+.+..
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999988743
No 282
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.76 E-value=2.8e-18 Score=141.10 Aligned_cols=106 Identities=22% Similarity=0.348 Sum_probs=89.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 305 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 305 (385)
+|+++|.+|||||++++++..+.+.. +.+|.+.+... +.. ...+.+.+|||||++++..++..+++++|++|+|||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999887764 46777755433 223 245789999999999999999999999999999999
Q ss_pred CCChhhhhh-----------------------------------------------------hheeccccCCCchHHHHH
Q psy125 306 VTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 306 ~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
++++.+|.. +++|||++|.||+++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 999987766 567999999999999999
Q ss_pred HHH
Q psy125 333 LAR 335 (385)
Q Consensus 333 l~~ 335 (385)
|++
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 975
No 283
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=3.9e-17 Score=152.04 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=113.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccccc----cchhhh---hccC
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFG----GLRDGY---YIQG 82 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~----~~~~~~---~~~~ 82 (385)
.|+|||.+|||||||+|+|.... +.+.+.+++|..+....+... ...+.+||+||..... .+...+ +.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 89999999999999999976543 234566777777776655544 6789999999974321 222333 4569
Q ss_pred cEEEEEEeCCCh---hhhhcHHHHHHHHHHh---cCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCCh
Q psy125 83 QCAIIMFDVTSR---ITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNF 156 (385)
Q Consensus 83 d~illV~d~~~~---~~~~~~~~~~~~l~~~---~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (385)
+++++|+|+++. ..++....|..++... ..++|+++|+||+|+.... .....+......+++.+||+++.|+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHHHHHHHHhCCcEEEEeCCCCCCH
Confidence 999999999764 4445555566666543 2478999999999984322 2223344444468999999999999
Q ss_pred HHHHHHHHHHHhcCCC
Q psy125 157 EKPFLWLARKLIGDPN 172 (385)
Q Consensus 157 ~~l~~~i~~~l~~~~~ 172 (385)
++++..|.+.+...+.
T Consensus 316 ~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 316 DELLYAVAELLEETPE 331 (424)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999998866543
No 284
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.75 E-value=6e-18 Score=138.56 Aligned_cols=111 Identities=37% Similarity=0.756 Sum_probs=103.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.++||||++++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+......+++++|++|+||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999999988888899999999888888888889999999999999999999999999999999
Q ss_pred eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
|.+++.+++. |+++||++|.|++++|.+|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999988777 899999999999999999863
No 285
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.75 E-value=4.2e-18 Score=144.10 Aligned_cols=90 Identities=24% Similarity=0.389 Sum_probs=83.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-----CeeEEEEEeeCCCccccCcccccccccCcE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-----RGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 299 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 299 (385)
+||+++|.++||||+|+++|+.+.|...+.+|+|.++..+.+.++ +..+.+.||||+|+++|..+++.||+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 489999999999999999999999999999999988877777663 467889999999999999999999999999
Q ss_pred EEEEEeCCChhhhhh
Q psy125 300 AIIMFDVTSRITYKN 314 (385)
Q Consensus 300 ~ilv~d~~~~~s~~~ 314 (385)
+|+|||++++.||++
T Consensus 81 iIlVyDvtn~~Sf~~ 95 (202)
T cd04102 81 IILVHDLTNRKSSQN 95 (202)
T ss_pred EEEEEECcChHHHHH
Confidence 999999999999976
No 286
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.75 E-value=1.2e-17 Score=139.05 Aligned_cols=111 Identities=24% Similarity=0.523 Sum_probs=96.2
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
....||+++|..|+|||++++++..+.+. .+.||.|.+...... .++.+.+||.+|+..++.+|+.||.+++++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeE
Confidence 46799999999999999999998766544 477887766544333 4567899999999999999999999999999
Q ss_pred EEEeCCChhhhhh-----------------------------------------------------hheeccccCCCchH
Q psy125 302 IMFDVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEK 328 (385)
Q Consensus 302 lv~d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~ 328 (385)
+|+|.+|...+.+ ++.|||++|+||.|
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence 9999999988777 67899999999999
Q ss_pred HHHHHHHHH
Q psy125 329 PFLWLARKL 337 (385)
Q Consensus 329 ~f~~l~~~i 337 (385)
+|+||.++|
T Consensus 167 ~l~WL~~~~ 175 (175)
T PF00025_consen 167 GLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999876
No 287
>PTZ00099 rab6; Provisional
Probab=99.75 E-value=6.2e-18 Score=140.47 Aligned_cols=97 Identities=32% Similarity=0.586 Sum_probs=90.6
Q ss_pred CccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh------------
Q psy125 247 GEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------ 314 (385)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~------------ 314 (385)
+.|.+.|.+|+|.++..+.+.+++..+.+.||||||+++|..+++.||++||++|+|||++++.||++
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 56888999999999998888899999999999999999999999999999999999999999999988
Q ss_pred ------------------------------------hheeccccCCCchHHHHHHHHHHhcCCCc
Q psy125 315 ------------------------------------YYDISAKSNYNFEKPFLWLARKLIGDPNL 343 (385)
Q Consensus 315 ------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~~~~~ 343 (385)
|+||||++|.||+++|.+|++.+.+.++.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999876644
No 288
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.75 E-value=4.1e-18 Score=139.83 Aligned_cols=105 Identities=26% Similarity=0.449 Sum_probs=89.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 305 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 305 (385)
|++++|.++||||++++++..+.+. .+.+|++.+... + +...+.+.+|||||++.+..++..++.+++++|+|||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVET--V--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEE--E--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999998777665 456777665542 2 2345778999999999999999999999999999999
Q ss_pred CCChhhhhh----------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 306 VTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 306 ~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
++++.+|.. +++|||++|.||+++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 999887753 7899999999999999999
Q ss_pred HH
Q psy125 334 AR 335 (385)
Q Consensus 334 ~~ 335 (385)
++
T Consensus 156 ~~ 157 (158)
T cd04151 156 VN 157 (158)
T ss_pred hc
Confidence 75
No 289
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.75 E-value=3.2e-17 Score=138.56 Aligned_cols=154 Identities=19% Similarity=0.131 Sum_probs=109.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccc--------------cceeeeEEEEEEeCCeeEEEEEEeCCCccccccchh
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVA--------------TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD 76 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~--------------~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~ 76 (385)
+|+++|.+|+|||||+|+|++......... ..+.+..............+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999887655543311 123344443444444567899999999987777778
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHHh------------
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHRK------------ 140 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~------------ 140 (385)
.+++.+|++++|+|+.+...... ..++..+.. .+.|+++++||+|+..... ..........
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTR 157 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcc
Confidence 88899999999999987654332 223333322 5899999999999875222 1222222222
Q ss_pred --cCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125 141 --KNLQYYDISAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 141 --~~~~~~~~Sa~~~~gi~~l~~~i~~~l 167 (385)
...+++++|++++.|+++++..|.+.+
T Consensus 158 ~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 158 NGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 356899999999999999999998875
No 290
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.74 E-value=6.3e-18 Score=143.15 Aligned_cols=110 Identities=20% Similarity=0.368 Sum_probs=93.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
...|++++|++|||||++++++..+.+. .+.+|.+.+... +.++ .+.+.+|||||+.++..++..++++++++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~--i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEE--LTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999998877764 567777654433 3333 4678999999999999888999999999999
Q ss_pred EEeCCChhhhhh---------------------------------------------------------------hheec
Q psy125 303 MFDVTSRITYKN---------------------------------------------------------------YYDIS 319 (385)
Q Consensus 303 v~d~~~~~s~~~---------------------------------------------------------------~~e~S 319 (385)
|||++++.+|+. +++||
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCS 172 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeE
Confidence 999999988765 48899
Q ss_pred cccCCCchHHHHHHHHHH
Q psy125 320 AKSNYNFEKPFLWLARKL 337 (385)
Q Consensus 320 ak~~~~v~~~f~~l~~~i 337 (385)
|++|.||+++|+||++.+
T Consensus 173 a~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 173 VVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ecCCCChHHHHHHHHhhC
Confidence 999999999999998753
No 291
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.74 E-value=7.2e-17 Score=130.91 Aligned_cols=150 Identities=36% Similarity=0.669 Sum_probs=113.8
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCC
Q psy125 14 LVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 92 (385)
Q Consensus 14 lvG~~g~GKSTLin~ll~~~~-~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~ 92 (385)
++|++|+|||||+|++++... .....++. ................+.+||+||...........+..+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999887766 33344444 5555566666667889999999998877666677889999999999999
Q ss_pred ChhhhhcHHHHH--HHHHHhcCCCCEEEEEeCCCCcchhhhHH---HHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 93 SRITYKNVPNWH--RDLVRVCENIPIVLCGNKVDIKDRKVKAK---SIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 93 ~~~~~~~~~~~~--~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
++..+.....|. ........+.|+++++||+|+........ ..........+++.+|+.++.|+++++.+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 998887766652 22222446889999999999865443322 2334555667999999999999999998875
No 292
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.74 E-value=7.7e-18 Score=138.33 Aligned_cols=111 Identities=31% Similarity=0.578 Sum_probs=99.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 305 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 305 (385)
||+++|++|||||+++++++.+.+...+.++.+ +........++..+.+.+||+||+..+..++..++++++++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998888888888876 5556666677777889999999999999999999999999999999
Q ss_pred CCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 306 VTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 306 ~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
++++.++.+ |+++||++|.||+++|.+|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 999998877 8999999999999999999986
Q ss_pred H
Q psy125 337 L 337 (385)
Q Consensus 337 i 337 (385)
|
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 4
No 293
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=1e-16 Score=136.49 Aligned_cols=155 Identities=12% Similarity=0.096 Sum_probs=106.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc----------cccchh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK----------FGGLRD 76 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~~ 76 (385)
...++|+++|.+|||||||+|++++..+...+.+++|.|+....... ...+.+|||||... +.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 45689999999999999999998887767777888888877665443 36799999999532 112223
Q ss_pred hhhcc---CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH----HHHHHHHhcCCeEEEEc
Q psy125 77 GYYIQ---GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----KSIVFHRKKNLQYYDIS 149 (385)
Q Consensus 77 ~~~~~---~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~S 149 (385)
.++.. .+++++|+|...+..... .++..+... .+.|+++++||+|+....... .+..........++++|
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~-~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~S 175 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE-YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFS 175 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH-cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 34443 367788888876543322 122122221 468899999999986543222 12233333356899999
Q ss_pred CCCCCChHHHHHHHHHHH
Q psy125 150 AKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l 167 (385)
++++.|+++++..|...+
T Consensus 176 a~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 176 SLKKQGIDELRAAIAKWL 193 (196)
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999988765
No 294
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.74 E-value=1.3e-16 Score=131.81 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=104.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--------chhhhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYY 79 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------~~~~~~ 79 (385)
...+|+++|++|+|||||+|++++... ....+....+..............+.+|||||...... .....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCce-EeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 467999999999999999999776543 22233334444444444445567899999999754322 223457
Q ss_pred ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc-hhhhHHHHHHHHhc--CCeEEEEcCCCCCCh
Q psy125 80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKK--NLQYYDISAKSNYNF 156 (385)
Q Consensus 80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~-~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi 156 (385)
.++|++++|+|+.++... ....+...+.. .+.|+++++||+|+.. .............. ..+++.+|++++.|+
T Consensus 81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 81 KDVDLVLFVVDASEPIGE-GDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred HhCCEEEEEEECCCccCc-hHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 889999999999987221 11222233322 3689999999999873 33323323233332 358899999999999
Q ss_pred HHHHHHHHHH
Q psy125 157 EKPFLWLARK 166 (385)
Q Consensus 157 ~~l~~~i~~~ 166 (385)
++++..|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 295
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=4.4e-17 Score=156.26 Aligned_cols=158 Identities=20% Similarity=0.210 Sum_probs=111.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc----------ccch-h
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF----------GGLR-D 76 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~----------~~~~-~ 76 (385)
..++|+++|++|||||||+|+|++..+ ..+.+.+|+|++.........+..+.+|||||..+. .... .
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 458999999999999999999887654 345567788877655444444566789999996321 1111 2
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH----HHHH-HHHhcCCeEEEEcCC
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----KSIV-FHRKKNLQYYDISAK 151 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~----~~~~-~~~~~~~~~~~~Sa~ 151 (385)
.++..+|++++|+|+++..+++... ++..+.. .+.|+++|+||+|+....... +... +......+++++||+
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence 3467999999999999987776543 3333332 578999999999996432111 1111 122234588999999
Q ss_pred CCCChHHHHHHHHHHHhc
Q psy125 152 SNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~l~~ 169 (385)
++.|+++++..+++.+..
T Consensus 366 ~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 366 TGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987643
No 296
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.74 E-value=8.1e-17 Score=137.39 Aligned_cols=159 Identities=15% Similarity=0.105 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-CCcccccceeeeEEEEEEeCC---------------------------------
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNR--------------------------------- 55 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~-~~~~~~~~g~t~~~~~~~~~~--------------------------------- 55 (385)
++|+++|++|+|||||+.++.+-.. ........|.+.........+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999654211 101111112222221111111
Q ss_pred eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh----
Q psy125 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK---- 131 (385)
Q Consensus 56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~---- 131 (385)
....+.+|||||++.+.......+..+|++++|+|++++.........+..+. .....|+++++||+|+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IMGLKHIIIVQNKIDLVKEEQALENY 159 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-HcCCCcEEEEEEchhccCHHHHHHHH
Confidence 12678999999998776666667788999999999987421111112222222 2233578999999998753221
Q ss_pred HHHHHHHHh---cCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 132 AKSIVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 132 ~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
.....+... ...+++++||+++.|+++++..|.+.+..
T Consensus 160 ~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 160 EQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 222222222 24579999999999999999999887643
No 297
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=8.2e-17 Score=151.60 Aligned_cols=158 Identities=17% Similarity=0.125 Sum_probs=112.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc----c---hhhhhccC
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----L---RDGYYIQG 82 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----~---~~~~~~~~ 82 (385)
-.|+|||.+|||||||+|+|...+ +.+...+++|+.+....+..+...+.+|||||...... + ....+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 479999999999999999976643 33466788888888877777778999999999742211 1 12245779
Q ss_pred cEEEEEEeCCChh----hhhcHHHHHHHHHHh------------cCCCCEEEEEeCCCCcchhhhH-HHHHHHHhcCCeE
Q psy125 83 QCAIIMFDVTSRI----TYKNVPNWHRDLVRV------------CENIPIVLCGNKVDIKDRKVKA-KSIVFHRKKNLQY 145 (385)
Q Consensus 83 d~illV~d~~~~~----~~~~~~~~~~~l~~~------------~~~~~~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~ 145 (385)
+++|+|+|+++.+ .+..+..+..++... ..++|+++|+||+|+....... .....+...+.++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V 317 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV 317 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence 9999999997532 233333333333322 2468999999999986543322 2222333446789
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhc
Q psy125 146 YDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 146 ~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
+.+||+++.|+++++.+|.+.+..
T Consensus 318 f~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 318 FEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999888754
No 298
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.74 E-value=3.7e-17 Score=148.95 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=120.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--------chhhhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYY 79 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------~~~~~~ 79 (385)
.-++++|+|+||||||||+|. +.+.....+++-+|+||+.......-+++.+.++||.|...... .....+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNa-L~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNA-LLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred cCceEEEECCCCCcHHHHHHH-HhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 358999999999999999999 66677889999999999999999999999999999999753322 234567
Q ss_pred ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125 80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (385)
.++|.+++|+|.+.+..-... ..+. ....++|+++|.||.|+......... ....+.+++.+|++++.|++.+
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDL-ALIE---LLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhH-HHHH---hcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHHHH
Confidence 899999999999986322221 1222 23368999999999999765442222 1223447899999999999999
Q ss_pred HHHHHHHHhcC
Q psy125 160 FLWLARKLIGD 170 (385)
Q Consensus 160 ~~~i~~~l~~~ 170 (385)
...|...+...
T Consensus 368 ~~~i~~~~~~~ 378 (454)
T COG0486 368 REAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHhhc
Confidence 99998887553
No 299
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.74 E-value=5.3e-17 Score=137.60 Aligned_cols=156 Identities=15% Similarity=0.084 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC----CCCc-ccccceeeeEEEEE--Ee------------CCeeEEEEEEeCCCccc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGE----FEKK-YVATLGVEVHPLVF--HT------------NRGAIRFNVWDTAGQEK 70 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~----~~~~-~~~~~g~t~~~~~~--~~------------~~~~~~~~i~Dt~g~~~ 70 (385)
++|+++|+.|+|||||+++|+... +... .....|.|...... .. ......+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999987621 1111 11122333332221 11 22367899999999865
Q ss_pred cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHH-------
Q psy125 71 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHR------- 139 (385)
Q Consensus 71 ~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~------- 139 (385)
+..........+|++++|+|+.+.........+. +... .+.|+++++||+|+..... ..+..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4333333456789999999998754333222222 1122 3679999999999864322 112211111
Q ss_pred hcCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 140 KKNLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 140 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
....+++++|++++.|+++++..|...+.
T Consensus 158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 158 FKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 23568999999999999999999988764
No 300
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.74 E-value=6.7e-17 Score=157.71 Aligned_cols=155 Identities=16% Similarity=0.201 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC-------CCCccc------ccceeeeEEEEEEe-----CCeeEEEEEEeCCCcccc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGE-------FEKKYV------ATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~-------~~~~~~------~~~g~t~~~~~~~~-----~~~~~~~~i~Dt~g~~~~ 71 (385)
-+|+++|+.++|||||+++|+... +...+. ...|.|........ ++..+.+++|||||+.++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 379999999999999999988642 222222 23477776554433 344689999999999998
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEEEE
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYYDI 148 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~ 148 (385)
...+..++..+|++|+|+|+++....+....|...+. .++|+++++||+|+..........++....+. .++.+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~v 160 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILA 160 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEe
Confidence 8888889999999999999998766665555544332 47899999999998643222112223333333 58999
Q ss_pred cCCCCCChHHHHHHHHHHH
Q psy125 149 SAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l 167 (385)
||+++.|+++++..|+..+
T Consensus 161 SAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 161 SAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred eccCCCCHHHHHHHHHHhC
Confidence 9999999999999998875
No 301
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.73 E-value=1.3e-16 Score=132.79 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc-----------chhh
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-----------LRDG 77 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-----------~~~~ 77 (385)
.++|+++|.+|+|||||+|+|++.... ......+.++.........++..+.+|||||...... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERV-IVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccce-eccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 579999999999999999998765432 2223344444443333333456688999999753311 0123
Q ss_pred hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcch--hhhHHHHHHH-Hh----cCCeEEEEcC
Q psy125 78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR--KVKAKSIVFH-RK----KNLQYYDISA 150 (385)
Q Consensus 78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--~~~~~~~~~~-~~----~~~~~~~~Sa 150 (385)
.+.++|++++|+|+.++.+.... .+...+.. .+.|+++++||+|+... .......... .. ...+++.+|+
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDL-RIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 45789999999999988665443 22222222 46899999999998654 2222222222 21 1358999999
Q ss_pred CCCCChHHHHHHHHHH
Q psy125 151 KSNYNFEKPFLWLARK 166 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~ 166 (385)
+++.|+.+++..+.+.
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999999888764
No 302
>KOG0073|consensus
Probab=99.73 E-value=2e-17 Score=128.17 Aligned_cols=112 Identities=25% Similarity=0.471 Sum_probs=100.4
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
++++|.++|..|+|||+++++|+ ++-.....||.|....+..+ ..+.++|||..||...++.|+.||..+||+|+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~-~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLL-GEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhc-CCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 46999999999999999999977 45577788888766655544 67789999999999999999999999999999
Q ss_pred EEeCCChhhhhh-----------------------------------------------------hheeccccCCCchHH
Q psy125 303 MFDVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 303 v~d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
|+|.+|+..|++ .+-|||.+|+++.+.
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence 999999999999 688999999999999
Q ss_pred HHHHHHHHhc
Q psy125 330 FLWLARKLIG 339 (385)
Q Consensus 330 f~~l~~~i~~ 339 (385)
|+||..++..
T Consensus 170 idWL~~~l~~ 179 (185)
T KOG0073|consen 170 IDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 303
>PLN00023 GTP-binding protein; Provisional
Probab=99.73 E-value=1.8e-17 Score=146.78 Aligned_cols=94 Identities=23% Similarity=0.392 Sum_probs=85.4
Q ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC-------------eeEEEEEeeCCCccccC
Q psy125 221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-------------GAIRFNVWDTAGQEKFG 287 (385)
Q Consensus 221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~i~Dt~G~~~~~ 287 (385)
....+||+++|..|||||+|+++|+.+.|...+.+|+|.++..+.+.+++ ..+.+.||||+|+++|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 34568999999999999999999999999999999999998877776642 46889999999999999
Q ss_pred cccccccccCcEEEEEEeCCChhhhhh
Q psy125 288 GLRDGYYIQGQCAIIMFDVTSRITYKN 314 (385)
Q Consensus 288 ~~~~~~~~~~~~~ilv~d~~~~~s~~~ 314 (385)
.+++.||++++++|+|||++++.||++
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFen 124 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTS 124 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHH
Confidence 999999999999999999999999976
No 304
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.73 E-value=1.5e-17 Score=139.85 Aligned_cols=110 Identities=18% Similarity=0.339 Sum_probs=91.9
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
...+++++|.+|||||++++++..+.+. .+.+|.+.+.... .. .++.+.+|||||+..++.++..|++++|++|+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEEL--AI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEE--EE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4589999999999999999999877664 4556665543332 22 35778999999999999999999999999999
Q ss_pred EEeCCChhhhhh-----------------------------------------------------------hheeccccC
Q psy125 303 MFDVTSRITYKN-----------------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 303 v~d~~~~~s~~~-----------------------------------------------------------~~e~Sak~~ 323 (385)
|+|++++.+|+. +++|||++|
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~ 170 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRR 170 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccC
Confidence 999999987755 678999999
Q ss_pred CCchHHHHHHHHHH
Q psy125 324 YNFEKPFLWLARKL 337 (385)
Q Consensus 324 ~~v~~~f~~l~~~i 337 (385)
.|++++|+||+.++
T Consensus 171 ~g~~~~~~wl~~~~ 184 (184)
T smart00178 171 MGYGEGFKWLSQYI 184 (184)
T ss_pred CChHHHHHHHHhhC
Confidence 99999999998753
No 305
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=1.5e-16 Score=151.95 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=112.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccch-----------h
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR-----------D 76 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~-----------~ 76 (385)
..++|+++|.+|+|||||+|+|++... ....+.+|+|++........++..+.+|||||..+..... .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 458999999999999999999876543 2345667888877665555555689999999976543321 2
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc-chhhhHHHHHHH-----HhcCCeEEEEcC
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFH-----RKKNLQYYDISA 150 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~-~~~~~~~~~~~~-----~~~~~~~~~~Sa 150 (385)
.+++.+|++|+|+|+.++.+.+.. .+...+.. .+.|+++|+||+|+. ......+..... .....+++++||
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA 326 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDL-RIAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISA 326 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence 357899999999999987666543 22222222 478999999999986 322222221111 113468999999
Q ss_pred CCCCChHHHHHHHHHHHhc
Q psy125 151 KSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~ 169 (385)
+++.|+++++..+.+....
T Consensus 327 ~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 327 LTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 306
>PRK11058 GTPase HflX; Provisional
Probab=99.73 E-value=8.3e-17 Score=150.84 Aligned_cols=155 Identities=21% Similarity=0.159 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-EEEEEEeCCCcccc--ccch------hhhhc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQEKF--GGLR------DGYYI 80 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-~~~~i~Dt~g~~~~--~~~~------~~~~~ 80 (385)
++|+|+|.+|||||||+|+|.+.... ..+.++.|++.........+ ..+.+|||+|.... ...+ ...+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~--v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY--AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee--eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 58999999999999999997765433 33445556655543333222 36789999997331 1111 22357
Q ss_pred cCcEEEEEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCe-EEEEcCCCCCChHH
Q psy125 81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ-YYDISAKSNYNFEK 158 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 158 (385)
++|++|+|+|++++..++.+..|...+... ..+.|+++|+||+|+....... .... ..+.+ ++.+||+++.|+++
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~~-~~~~~~~v~ISAktG~GIde 352 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDRD-EENKPIRVWLSAQTGAGIPL 352 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHHH-hcCCCceEEEeCCCCCCHHH
Confidence 899999999999987766654444333332 2478999999999986432111 1111 12333 58899999999999
Q ss_pred HHHHHHHHHhc
Q psy125 159 PFLWLARKLIG 169 (385)
Q Consensus 159 l~~~i~~~l~~ 169 (385)
++..|...+..
T Consensus 353 L~e~I~~~l~~ 363 (426)
T PRK11058 353 LFQALTERLSG 363 (426)
T ss_pred HHHHHHHHhhh
Confidence 99999988743
No 307
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.73 E-value=3.1e-16 Score=128.22 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=108.1
Q ss_pred cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCC
Q psy125 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS 152 (385)
Q Consensus 73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (385)
.+...+..++|++++|+|++++...... .+...+. ..++|+++|+||+|+...........+....+.+++.+|+++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~ 80 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL--ELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE 80 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH--hCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence 3456677889999999999876543331 2222222 146899999999998644322222223334456789999999
Q ss_pred CCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECC
Q psy125 153 NYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGD 232 (385)
Q Consensus 153 ~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 232 (385)
+.|+++++..+...+... ....+++++|.
T Consensus 81 ~~gi~~L~~~l~~~~~~~---------------------------------------------------~~~~~~~~ig~ 109 (156)
T cd01859 81 RLGTKILRRTIKELAKID---------------------------------------------------GKEGKVGVVGY 109 (156)
T ss_pred cccHHHHHHHHHHHHhhc---------------------------------------------------CCCcEEEEECC
Confidence 999999998887765321 12257899999
Q ss_pred CCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125 233 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283 (385)
Q Consensus 233 ~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 283 (385)
+|+|||++++++.. .....+.+++|++.....+..+. .+.+|||||.
T Consensus 110 ~~~Gkssl~~~l~~-~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 110 PNVGKSSIINALKG-RHSASTSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCCCHHHHHHHHhC-CCccccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 99999999999874 44566778888887666555543 4789999994
No 308
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.72 E-value=1.6e-17 Score=136.24 Aligned_cols=105 Identities=27% Similarity=0.486 Sum_probs=90.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 305 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 305 (385)
|++++|.+|||||+++++++.+. ...+.++.+.+.....+ ..+.+.+|||||++.+..++..++.++|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999998776 45567777766544332 35678999999999999999999999999999999
Q ss_pred CCChhhhhh----------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 306 VTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 306 ~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
++++.+|.. |+++||++|.||+++|.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 999988776 7899999999999999999
Q ss_pred HH
Q psy125 334 AR 335 (385)
Q Consensus 334 ~~ 335 (385)
+.
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 75
No 309
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.72 E-value=1.3e-17 Score=138.07 Aligned_cols=106 Identities=26% Similarity=0.454 Sum_probs=87.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc------cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcE
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGE------FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 299 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 299 (385)
+|+++|.+|||||+|++++.... +...+.+|.+....... .+ ...+.+|||||++.+..++..+++++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIE--VG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEE--EC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 48999999999999999976422 23455666666554333 33 5678999999999999999999999999
Q ss_pred EEEEEeCCChhhhhh------------------------------------------------------hheeccccCCC
Q psy125 300 AIIMFDVTSRITYKN------------------------------------------------------YYDISAKSNYN 325 (385)
Q Consensus 300 ~ilv~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~ 325 (385)
+++|||++++.+++. ++++||++|.|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 999999999877665 78999999999
Q ss_pred chHHHHHHHH
Q psy125 326 FEKPFLWLAR 335 (385)
Q Consensus 326 v~~~f~~l~~ 335 (385)
|+++|.||++
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 310
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.72 E-value=1.2e-16 Score=130.71 Aligned_cols=139 Identities=14% Similarity=0.064 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc----chhhhhccCcEEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----LRDGYYIQGQCAI 86 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----~~~~~~~~~d~il 86 (385)
+|+++|++|+|||||+|++.+ .+.. ...+.+ ...... .+|||||...... .....+.++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~-~~~~-~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQG-NYTL-ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcC-CCcc-CccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999554 3321 111111 111221 2699999732221 1123468999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcC--CeEEEEcCCCCCChHHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
+|+|+++..++.. .|+..+ ..+.|+++++||+|+.... .....++....+ .+++++|++++.|+++++..++
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred EEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 9999998866533 333332 2467899999999986532 233344444444 3899999999999999999998
Q ss_pred HHHh
Q psy125 165 RKLI 168 (385)
Q Consensus 165 ~~l~ 168 (385)
+.+.
T Consensus 144 ~~~~ 147 (158)
T PRK15467 144 SLTK 147 (158)
T ss_pred Hhch
Confidence 8763
No 311
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.72 E-value=1.2e-16 Score=133.78 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=98.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc----------cccchh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK----------FGGLRD 76 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~~ 76 (385)
...++|+++|++|+|||||+|++++..+...+.++.|.|+....+..+. .+.+|||||... +.....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 4568999999999999999999888766666778888888776655432 688999999532 111222
Q ss_pred hhhc---cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHHhcC--CeEEE
Q psy125 77 GYYI---QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHRKKN--LQYYD 147 (385)
Q Consensus 77 ~~~~---~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~~~--~~~~~ 147 (385)
.+++ .++++++|+|++.+...... .+...+.. .+.|+++++||+|+..... ..++.......+ .++++
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~ 169 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQL 169 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEE
Confidence 3443 45799999999876544332 22222222 4789999999999864322 222333333332 37999
Q ss_pred EcCCCCCCh
Q psy125 148 ISAKSNYNF 156 (385)
Q Consensus 148 ~Sa~~~~gi 156 (385)
+||+++.|+
T Consensus 170 ~Sa~~g~gi 178 (179)
T TIGR03598 170 FSSLKKTGI 178 (179)
T ss_pred EECCCCCCC
Confidence 999999986
No 312
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.71 E-value=8.2e-17 Score=135.84 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=109.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCc----------------ccccceeeeEEEEEEeC--CeeEEEEEEeCCCcc
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----------------YVATLGVEVHPLVFHTN--RGAIRFNVWDTAGQE 69 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----------------~~~~~g~t~~~~~~~~~--~~~~~~~i~Dt~g~~ 69 (385)
+..+|+++|+.++|||||+++|+....... .....+.|......... .....++++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 357899999999999999999885432110 11123344444444444 678999999999998
Q ss_pred ccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHH---HH-HHHHhc----
Q psy125 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK---SI-VFHRKK---- 141 (385)
Q Consensus 70 ~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~---~~-~~~~~~---- 141 (385)
++.......+..+|++|+|+|+.+....+. ...+..+.. .++|+++++||+|+...+.... +. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE--LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH--TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ceeecccceecccccceeeeeccccccccc-ccccccccc--cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 887777778899999999999987644332 222333322 5788999999999974332222 22 122222
Q ss_pred --CCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 142 --NLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 142 --~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
..+++++|+.+|.|+.+++..|.+.++
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 347999999999999999999988753
No 313
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.71 E-value=2.7e-17 Score=137.87 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=90.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc-------ccccccc------ceeeEEEEEEEEe-----CCeeEEEEEeeCCCccccC
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGE-------FEKKYVA------TLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEKFG 287 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~~ 287 (385)
+|+++|.++||||+|+++++... +...+.+ +.|.++....+.+ ++..+.+.+|||||++.|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998531 2223333 3355665554433 5677889999999999999
Q ss_pred cccccccccCcEEEEEEeCCChhhhhh---------------------------------------------hheecccc
Q psy125 288 GLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAKS 322 (385)
Q Consensus 288 ~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~ 322 (385)
..+..+++++|++|+|||++++.+++. |+++||++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKT 161 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccC
Confidence 999999999999999999998755443 57899999
Q ss_pred CCCchHHHHHHHHHH
Q psy125 323 NYNFEKPFLWLARKL 337 (385)
Q Consensus 323 ~~~v~~~f~~l~~~i 337 (385)
|.||+++|.+|++.+
T Consensus 162 g~gi~~l~~~l~~~~ 176 (179)
T cd01890 162 GLGVEDLLEAIVERI 176 (179)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999999875
No 314
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.71 E-value=3.9e-16 Score=155.92 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=117.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc----------hh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL----------RD 76 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~----------~~ 76 (385)
|+.++|+++|++|||||||+|++.+... .+.+.+|+|++.+......++..+.++||||...+... ..
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence 3568999999999999999999765443 46778999999988888888899999999998654321 12
Q ss_pred hhh--ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh-hhHHHHHHHHhcCCeEEEEcCCCC
Q psy125 77 GYY--IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK-VKAKSIVFHRKKNLQYYDISAKSN 153 (385)
Q Consensus 77 ~~~--~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (385)
.++ ..+|++++|+|+++.+.. ..+..++.+ .++|+++++||+|+.+++ .......+.+..+.+++++|+.++
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERN---LYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhh---HHHHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecC
Confidence 232 478999999999885432 223334433 478999999999986432 233445566677889999999999
Q ss_pred CChHHHHHHHHHHH
Q psy125 154 YNFEKPFLWLARKL 167 (385)
Q Consensus 154 ~gi~~l~~~i~~~l 167 (385)
.|+++++..+....
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999888765
No 315
>KOG1673|consensus
Probab=99.70 E-value=2.4e-16 Score=120.72 Aligned_cols=162 Identities=25% Similarity=0.400 Sum_probs=137.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
-++||.++|++..|||||+-.++++.+...+..+.|++.-.+...+.+..+.+.+||.+|++++..+..-...++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999888877777788999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcch-------hhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
+||++.+..+..+..|+.+.++.....--+++++|.|+.-. ....+...+++......+.+|+.+..++++.|
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 99999999999999999988774333334688999996321 12334556777778899999999999999999
Q ss_pred HHHHHHHhc
Q psy125 161 LWLARKLIG 169 (385)
Q Consensus 161 ~~i~~~l~~ 169 (385)
..+...+..
T Consensus 179 K~vlAklFn 187 (205)
T KOG1673|consen 179 KIVLAKLFN 187 (205)
T ss_pred HHHHHHHhC
Confidence 877766654
No 316
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.70 E-value=8.5e-17 Score=139.44 Aligned_cols=118 Identities=36% Similarity=0.584 Sum_probs=107.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|..||||||+++++..+.|...+.++++..+...........+++.+|||+||++|+.+++.|+++++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999999999998888777777666688899999999999999999999999999999
Q ss_pred EeCCChhhhhh----------------------------------------------------------------hheec
Q psy125 304 FDVTSRITYKN----------------------------------------------------------------YYDIS 319 (385)
Q Consensus 304 ~d~~~~~s~~~----------------------------------------------------------------~~e~S 319 (385)
||++++.++.+ +++||
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999666655 79999
Q ss_pred cc--cCCCchHHHHHHHHHHhcCC
Q psy125 320 AK--SNYNFEKPFLWLARKLIGDP 341 (385)
Q Consensus 320 ak--~~~~v~~~f~~l~~~i~~~~ 341 (385)
|+ .+.||+++|..+++.+....
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhh
Confidence 99 99999999999999997654
No 317
>PRK12289 GTPase RsgA; Reviewed
Probab=99.70 E-value=4.1e-16 Score=142.03 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=108.0
Q ss_pred cchhhhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCC
Q psy125 73 GLRDGYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAK 151 (385)
Q Consensus 73 ~~~~~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (385)
.+.+..+.++|.+++|+|+.++. ....+..|+.... ..++|+++|+||+|+........+...+...++.++.+||.
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~--~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~ 158 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE--STGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVE 158 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH--HCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcC
Confidence 34455688999999999998765 3334456655443 25899999999999975443344444555667899999999
Q ss_pred CCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEEC
Q psy125 152 SNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVG 231 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 231 (385)
++.|+++++..+... .++++|
T Consensus 159 tg~GI~eL~~~L~~k-----------------------------------------------------------i~v~iG 179 (352)
T PRK12289 159 TGIGLEALLEQLRNK-----------------------------------------------------------ITVVAG 179 (352)
T ss_pred CCCCHHHHhhhhccc-----------------------------------------------------------eEEEEe
Confidence 999998776654321 279999
Q ss_pred CCCCCHHHHHHHHhcCcccccccccee-------eEEEEEEEEeCCeeEEEEEeeCCCccccCc
Q psy125 232 DGGTGKTTFVKRHLTGEFEKKYVATLG-------VEVHPLVFHTNRGAIRFNVWDTAGQEKFGG 288 (385)
Q Consensus 232 ~~~vgks~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 288 (385)
.+|||||||+|.++... ...+....| +|.....+.+.+++ .|+||||...+.-
T Consensus 180 ~SgVGKSSLIN~L~~~~-~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~l 239 (352)
T PRK12289 180 PSGVGKSSLINRLIPDV-ELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPDL 239 (352)
T ss_pred CCCCCHHHHHHHHcCcc-ccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccccc
Confidence 99999999999987432 222233333 78888777776544 6999999866543
No 318
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=6e-16 Score=140.74 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=118.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc-----------hh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL-----------RD 76 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~-----------~~ 76 (385)
..+||+|+|.||+|||||+|+| .+.....+++.+|+|++.......+++..+.++||.|..+.... ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~i-lgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAI-LGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHh-ccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 4699999999999999999994 55667788999999999999999999999999999997532221 23
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh--hhHHH----H-HHHHhcCCeEEEEc
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--VKAKS----I-VFHRKKNLQYYDIS 149 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--~~~~~----~-~~~~~~~~~~~~~S 149 (385)
..+..++++++|+|++.+.+.+.. .....+. ..+.++++++||.|+.... ...+. . .+......+.+.+|
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~--~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDL-RIAGLIE--EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHH-HHHHHHH--HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 345789999999999988665542 2222222 2688999999999986541 11111 1 12223345899999
Q ss_pred CCCCCChHHHHHHHHHHHh
Q psy125 150 AKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~ 168 (385)
|+++.++.+++..+.....
T Consensus 333 A~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ecCCCChHHHHHHHHHHHH
Confidence 9999999999999887653
No 319
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=1e-15 Score=146.35 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=112.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc-----------hh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL-----------RD 76 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~-----------~~ 76 (385)
..++|+++|++|+|||||+|+|++.. .....+..|+|++.........+..+.+|||||..+.... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEE-RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC-ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 46899999999999999999977654 2334567788888876666556677899999997433221 12
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHH-----HHhcCCeEEEEcCC
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVF-----HRKKNLQYYDISAK 151 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~ 151 (385)
.++..+|++|+|+|+.++.+.+.. .+...+.. .+.|+++++||+|+.......+.... ......+++++||+
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~ 327 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-RIAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISAL 327 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCC
Confidence 356789999999999987665543 22222222 47899999999998743322222111 11234689999999
Q ss_pred CCCChHHHHHHHHHHHh
Q psy125 152 SNYNFEKPFLWLARKLI 168 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~l~ 168 (385)
++.|+++++..+.+...
T Consensus 328 ~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 328 TGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999887653
No 320
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.69 E-value=7.3e-17 Score=134.48 Aligned_cols=109 Identities=20% Similarity=0.455 Sum_probs=90.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..++++++|.+|||||++++++....+ ..+.++.|.+.... ..+ +..+.+|||+|+.++...+..++++++++++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~~~i--~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNIKTV--QSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcceEEE--EEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 358999999999999999999876554 34667777554433 333 4678999999999998888889999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||+++..+|.. +++|||++|.|++++|
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGM 167 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHH
Confidence 999999877743 4689999999999999
Q ss_pred HHHHHH
Q psy125 331 LWLARK 336 (385)
Q Consensus 331 ~~l~~~ 336 (385)
.||+++
T Consensus 168 ~~l~~~ 173 (173)
T cd04155 168 NWVCKN 173 (173)
T ss_pred HHHhcC
Confidence 999863
No 321
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.69 E-value=1.1e-16 Score=131.11 Aligned_cols=105 Identities=28% Similarity=0.527 Sum_probs=92.1
Q ss_pred EEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeC
Q psy125 227 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 306 (385)
Q Consensus 227 i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~ 306 (385)
++++|++|||||++++++....|...+.++.+.+... +.. +.+.+.+|||||+.++..++..+++++|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7899999999999999999999998888888766543 222 347799999999999999999999999999999999
Q ss_pred CChhhhhh----------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 307 TSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 307 ~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
+++.+|.. ++++||++|.||+++|.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 99888753 68999999999999999987
Q ss_pred H
Q psy125 335 R 335 (385)
Q Consensus 335 ~ 335 (385)
+
T Consensus 158 ~ 158 (159)
T cd04159 158 K 158 (159)
T ss_pred h
Confidence 5
No 322
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.69 E-value=6.3e-16 Score=130.67 Aligned_cols=151 Identities=17% Similarity=0.146 Sum_probs=106.6
Q ss_pred cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh-HHHHHHH-----HhcC--
Q psy125 71 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-AKSIVFH-----RKKN-- 142 (385)
Q Consensus 71 ~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~-~~~~~~~-----~~~~-- 142 (385)
++.....++.++|++++|+|+.++... |...+.....+.|+++|+||+|+...... .....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 355667788999999999999876421 22222222357899999999998643321 1122222 2222
Q ss_pred -CeEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCC
Q psy125 143 -LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMD 221 (385)
Q Consensus 143 -~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 221 (385)
..++.+||+++.|+++++..|...+..
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~---------------------------------------------------- 126 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAKK---------------------------------------------------- 126 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhhc----------------------------------------------------
Confidence 268999999999999999888776521
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCcc-------ccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEF-------EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 283 (385)
...++++|.+||||||++|.++.... ....+..+|+|.....+.++. .+.|+||||.
T Consensus 127 --~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 --GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred --CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 14699999999999999999885432 124556678999988887764 3689999994
No 323
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.68 E-value=1.5e-15 Score=147.48 Aligned_cols=153 Identities=14% Similarity=0.173 Sum_probs=105.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
.+.++|+++|+.|+|||||+++|.+..+..... .|.|........... ...+.+|||||++.+..++...+..+|++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~--~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEA--GGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccC--CceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 456899999999999999999987766544332 344444333333222 23789999999999888888888999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHh-------c--CCeEEEEcCCCCCCh
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK-------K--NLQYYDISAKSNYNF 156 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-------~--~~~~~~~Sa~~~~gi 156 (385)
++|+|+++....+....+ .... ..+.|+++++||+|+..... ......... . ..+++++||++|.|+
T Consensus 163 ILVVda~dgv~~qT~e~i-~~~~--~~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEAI-SHAK--AANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEEEECCCCCCHhHHHHH-HHHH--HcCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 999999875433322222 2221 25789999999999854221 111111111 1 247899999999999
Q ss_pred HHHHHHHHH
Q psy125 157 EKPFLWLAR 165 (385)
Q Consensus 157 ~~l~~~i~~ 165 (385)
++++.+|..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999998864
No 324
>KOG0070|consensus
Probab=99.68 E-value=1.5e-16 Score=126.86 Aligned_cols=116 Identities=28% Similarity=0.444 Sum_probs=103.1
Q ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcE
Q psy125 220 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 299 (385)
Q Consensus 220 ~~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 299 (385)
.+..+.+|+++|-.++||||++.++-.+++... .||+|.......+ +.+.+.+||..||++++.+|..||+++++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcE
Confidence 344678999999999999999999888887666 8999877666555 37789999999999999999999999999
Q ss_pred EEEEEeCCChhhhhh----------------------------------------------------hheeccccCCCch
Q psy125 300 AIIMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFE 327 (385)
Q Consensus 300 ~ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~ 327 (385)
+|||.|.+|++.+.+ +..|+|.+|.|+.
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 999999999999988 7889999999999
Q ss_pred HHHHHHHHHHhcC
Q psy125 328 KPFLWLARKLIGD 340 (385)
Q Consensus 328 ~~f~~l~~~i~~~ 340 (385)
|.++|+...+...
T Consensus 168 egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 168 EGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988653
No 325
>KOG0074|consensus
Probab=99.68 E-value=4.4e-16 Score=117.41 Aligned_cols=158 Identities=22% Similarity=0.336 Sum_probs=122.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
...+.+||+++|-.++|||||++. +.+.......|+-|.....+.+. +.+++++||.+|+...+..|..|+.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~~---g~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEYD---GTFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEeec---CcEEEEEEecCCccccchhhhhhhhccce
Confidence 346789999999999999999999 66677777788888776666543 67999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHH-----HHHHhcCCeEEEEcCCCCCChH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFE 157 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~ 157 (385)
+|+|+|.++...|+++...+.++.. .....|+.+..||.|+.......+.. ...+.+...+-++|+.++.|+.
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 9999999998888877766666655 33578899999999986543322221 1223344577889999999887
Q ss_pred HHHHHHHHH
Q psy125 158 KPFLWLARK 166 (385)
Q Consensus 158 ~l~~~i~~~ 166 (385)
.-..++++.
T Consensus 169 dg~~wv~sn 177 (185)
T KOG0074|consen 169 DGSDWVQSN 177 (185)
T ss_pred CcchhhhcC
Confidence 766665543
No 326
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.67 E-value=1.2e-15 Score=151.52 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=108.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+.|+|+|+.++|||||+++|..+.+... ...|.|.......+.+.+..+++|||||+..|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4678999999999999999999876555433 23455555444444444578999999999999888888889999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHH---HHHhc--CCeEEEEcCCCCCChHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIV---FHRKK--NLQYYDISAKSNYNFEK 158 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~---~~~~~--~~~~~~~Sa~~~~gi~~ 158 (385)
+|+|+++....+....|. .. ...+.|+++++||+|+..... ..++.. +.... ..+++++||++|.|+++
T Consensus 366 LVVdAddGv~~qT~e~i~-~a--~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~e 442 (787)
T PRK05306 366 LVVAADDGVMPQTIEAIN-HA--KAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDE 442 (787)
T ss_pred EEEECCCCCCHhHHHHHH-HH--HhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchH
Confidence 999998854332222221 11 125789999999999864221 111111 11111 25799999999999999
Q ss_pred HHHHHHH
Q psy125 159 PFLWLAR 165 (385)
Q Consensus 159 l~~~i~~ 165 (385)
++..|..
T Consensus 443 Lle~I~~ 449 (787)
T PRK05306 443 LLEAILL 449 (787)
T ss_pred HHHhhhh
Confidence 9988865
No 327
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.67 E-value=5.4e-15 Score=120.89 Aligned_cols=153 Identities=12% Similarity=0.059 Sum_probs=102.8
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcC-CeEEEEcCCCCCC
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN-LQYYDISAKSNYN 155 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 155 (385)
..+.++|++++|+|++++..... ..+...+.....+.|+++|+||+|+........+...+.... ...+.+|++++.|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~ 82 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC-HHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccccc
Confidence 34678999999999998743321 122222222224589999999999975543333333333322 2357789999999
Q ss_pred hHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCC
Q psy125 156 FEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGT 235 (385)
Q Consensus 156 i~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~v 235 (385)
+++++..+...+... ......+++++|.+||
T Consensus 83 ~~~L~~~l~~~~~~~-------------------------------------------------~~~~~~~v~~~G~~nv 113 (157)
T cd01858 83 KGSLIQLLRQFSKLH-------------------------------------------------SDKKQISVGFIGYPNV 113 (157)
T ss_pred HHHHHHHHHHHHhhh-------------------------------------------------ccccceEEEEEeCCCC
Confidence 998888776543100 0012367899999999
Q ss_pred CHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125 236 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283 (385)
Q Consensus 236 gks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 283 (385)
||||++|+++.. -.....++.|+|.....+....+ +.++||||.
T Consensus 114 GKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~---~~liDtPGi 157 (157)
T cd01858 114 GKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKR---IYLIDCPGV 157 (157)
T ss_pred ChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCC---EEEEECcCC
Confidence 999999997754 34566778888888777665433 579999994
No 328
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.67 E-value=1.4e-15 Score=126.07 Aligned_cols=160 Identities=19% Similarity=0.148 Sum_probs=110.4
Q ss_pred cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCC
Q psy125 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS 152 (385)
Q Consensus 73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (385)
......+.++|.+++|+|++++...... .+.. ...+.|.++|+||+|+..........+++......++.+|+++
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~ 85 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----ILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKS 85 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----HhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence 3445677899999999999876543321 1222 2246789999999999654333233344444556789999999
Q ss_pred CCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECC
Q psy125 153 NYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGD 232 (385)
Q Consensus 153 ~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 232 (385)
+.|+++++..+...+... .+.. ........++++++|.
T Consensus 86 ~~gi~~L~~~l~~~l~~~------------------------------~~~~------------~~~~~~~~~~~~~~G~ 123 (171)
T cd01856 86 GKGVKKLLKAAKKLLKDI------------------------------EKLK------------AKGLLPRGIRAMVVGI 123 (171)
T ss_pred cccHHHHHHHHHHHHHHH------------------------------hhhh------------hcccCCCCeEEEEECC
Confidence 999999888887765220 0000 0011123478999999
Q ss_pred CCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125 233 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283 (385)
Q Consensus 233 ~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 283 (385)
+|||||++++++....+. .+.+..|+|+....+.++ ..+.+|||||.
T Consensus 124 ~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 124 PNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 999999999998876653 556677888888777765 23689999995
No 329
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.67 E-value=2.3e-15 Score=120.66 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=97.4
Q ss_pred hhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCC
Q psy125 76 DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYN 155 (385)
Q Consensus 76 ~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (385)
...+..+|++++|+|++++.+.... .+...+.....++|+++++||+|+..+.....+...+...+..++.+|+.++.+
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~-~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPP-DLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCH-HHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 4466889999999999988765421 222222222257899999999999665444444555555667889999876542
Q ss_pred hHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCC
Q psy125 156 FEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGT 235 (385)
Q Consensus 156 i~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~v 235 (385)
+++++|.+||
T Consensus 85 ----------------------------------------------------------------------~~~~~G~~~v 94 (141)
T cd01857 85 ----------------------------------------------------------------------TIGLVGYPNV 94 (141)
T ss_pred ----------------------------------------------------------------------EEEEECCCCC
Confidence 4899999999
Q ss_pred CHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125 236 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283 (385)
Q Consensus 236 gks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 283 (385)
|||+++|+++...+. ......|.+.+...+.+++ .+.||||||.
T Consensus 95 GKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 95 GKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred CHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 999999998876654 4566677888888777765 3689999996
No 330
>PRK12288 GTPase RsgA; Reviewed
Probab=99.67 E-value=2.4e-15 Score=137.10 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=107.8
Q ss_pred hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHHhcCCeEEEEcCCCCC
Q psy125 78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKSNY 154 (385)
Q Consensus 78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (385)
+..++|.+++|+++....++..+..|+..... .++|.++|+||+|+..... .......+...+.+++.+||+++.
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 35779999999999888888888888765432 5789999999999965432 233334455667899999999999
Q ss_pred ChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCC
Q psy125 155 NFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGG 234 (385)
Q Consensus 155 gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~ 234 (385)
|+++++..|... -++++|.+|
T Consensus 195 GideL~~~L~~k-----------------------------------------------------------i~~~vG~sg 215 (347)
T PRK12288 195 GLEELEAALTGR-----------------------------------------------------------ISIFVGQSG 215 (347)
T ss_pred CHHHHHHHHhhC-----------------------------------------------------------CEEEECCCC
Confidence 999888765432 168999999
Q ss_pred CCHHHHHHHHhcCcc------ccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125 235 TGKTTFVKRHLTGEF------EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287 (385)
Q Consensus 235 vgks~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 287 (385)
||||||+|.++.... ........++|.....+.+.+++ .|+||||...+.
T Consensus 216 VGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 216 VGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred CCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 999999999885432 22222333467777777776544 499999988765
No 331
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.66 E-value=1.9e-15 Score=147.67 Aligned_cols=156 Identities=14% Similarity=0.176 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC--C-----CCcc------cccceeeeEEEEEEe-----CCeeEEEEEEeCCCcccc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGE--F-----EKKY------VATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~--~-----~~~~------~~~~g~t~~~~~~~~-----~~~~~~~~i~Dt~g~~~~ 71 (385)
-+|+|+|+.++|||||+.+|+... . ...+ ....|.|........ ++..+.+++|||||+.++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 489999999999999999987631 1 1111 123466655443333 344789999999999998
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEEEE
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYYDI 148 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~ 148 (385)
...+..++..+|++|+|+|+++....+....|.... ..++|+++|+||+|+..........++....+. .++.+
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~---~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~i 164 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL---ENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLV 164 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEE
Confidence 888888899999999999999876555444444332 247899999999998643222112223222233 48999
Q ss_pred cCCCCCChHHHHHHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~ 168 (385)
||+++.|+++++.+|...+.
T Consensus 165 SAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 165 SAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred ecCCCCCHHHHHHHHHHhCc
Confidence 99999999999999988753
No 332
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=1.2e-15 Score=153.11 Aligned_cols=158 Identities=18% Similarity=0.165 Sum_probs=109.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc----------c-hh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----------L-RD 76 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----------~-~~ 76 (385)
..++|+++|++|||||||+|+|++... ..+.+.+|+|++........++..+.+|||||..+... + ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 458999999999999999999877653 23445677777765544444555677999999642111 1 12
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCC
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAK 151 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 151 (385)
..+..+|++++|+|+++..+.+... +...+.. .++|+++|+||+|+.+............ ....+++.+||+
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence 3367899999999999887766543 3333322 5789999999999865332222211111 123467899999
Q ss_pred CCCChHHHHHHHHHHHhc
Q psy125 152 SNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~l~~ 169 (385)
++.|+++++..+.+.+..
T Consensus 605 tg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 605 TGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998754
No 333
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.66 E-value=1.5e-15 Score=144.30 Aligned_cols=154 Identities=18% Similarity=0.126 Sum_probs=107.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCC-----------------------------cccccceeeeEEEEEEeCCee
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEK-----------------------------KYVATLGVEVHPLVFHTNRGA 57 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~-----------------------------~~~~~~g~t~~~~~~~~~~~~ 57 (385)
.+.++|+++|+.++|||||+++|+...-.- ......|+|++........+.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 467999999999999999999987421110 012257889999888888889
Q ss_pred EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh------h
Q psy125 58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV------K 131 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~------~ 131 (385)
..+.+|||||++++.......+.++|++++|+|+++..++.....+...+.......++++++||+|+..... .
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 9999999999987766555557899999999999874223222222222223323346899999999864111 1
Q ss_pred HHHHHHHHhcC-----CeEEEEcCCCCCChHHHH
Q psy125 132 AKSIVFHRKKN-----LQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 132 ~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 160 (385)
.+...+....+ .+++++||+++.|+++..
T Consensus 164 ~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 164 EEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 23333433333 478999999999998643
No 334
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.65 E-value=2.3e-15 Score=148.29 Aligned_cols=156 Identities=18% Similarity=0.212 Sum_probs=107.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEE----EEEeCCeeEEEEEEeCCCccccccchhhhhccC
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL----VFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQG 82 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~----~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 82 (385)
.+...|+|+|+.|+|||||+++|....+..... .|.|.... ..........+.+|||||+..+..++..++..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~--~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEA--GGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccC--CccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 356799999999999999999987655443221 23332211 122223468899999999998888888888999
Q ss_pred cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh---HHHHHH---HHhc--CCeEEEEcCCCCC
Q psy125 83 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK---AKSIVF---HRKK--NLQYYDISAKSNY 154 (385)
Q Consensus 83 d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~---~~~~~~---~~~~--~~~~~~~Sa~~~~ 154 (385)
|++|+|+|+++....+....+ ..+. ..+.|+++++||+|+...... ..+..+ .... ..+++++||++|.
T Consensus 320 DiaILVVDA~dGv~~QT~E~I-~~~k--~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~ 396 (742)
T CHL00189 320 DIAILIIAADDGVKPQTIEAI-NYIQ--AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGT 396 (742)
T ss_pred CEEEEEEECcCCCChhhHHHH-HHHH--hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCC
Confidence 999999999885443332222 2222 257899999999998653211 111111 1111 2589999999999
Q ss_pred ChHHHHHHHHHHH
Q psy125 155 NFEKPFLWLARKL 167 (385)
Q Consensus 155 gi~~l~~~i~~~l 167 (385)
|+++++..|....
T Consensus 397 GIdeLle~I~~l~ 409 (742)
T CHL00189 397 NIDKLLETILLLA 409 (742)
T ss_pred CHHHHHHhhhhhh
Confidence 9999999887653
No 335
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.65 E-value=2.4e-15 Score=146.91 Aligned_cols=145 Identities=15% Similarity=0.124 Sum_probs=107.0
Q ss_pred cCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc------hhhhh--ccCcEEEE
Q psy125 16 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL------RDGYY--IQGQCAII 87 (385)
Q Consensus 16 G~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~------~~~~~--~~~d~ill 87 (385)
|.+|||||||+|++.+... .+.+.+|+|.+........++..+.+|||||+..+... ...++ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ--TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC--eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999776543 45567888888776665555677899999998765443 23333 47899999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
|+|.++.+. ...+..++.+ .+.|+++++||+|+.++.. ..+...+.+..+.+++++||+++.|++++++.+.+.
T Consensus 79 VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 999987432 1233333332 4789999999999864332 233455666677899999999999999999999876
Q ss_pred H
Q psy125 167 L 167 (385)
Q Consensus 167 l 167 (385)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 4
No 336
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.65 E-value=3.7e-15 Score=129.44 Aligned_cols=150 Identities=15% Similarity=0.068 Sum_probs=100.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc-------chhhhhccCc
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-------LRDGYYIQGQ 83 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-------~~~~~~~~~d 83 (385)
+|+|+|++|+|||||+|+|.+... .....++.|..+........+..+.+|||||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~--~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS--EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc--cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 799999999999999999776432 2233445555555554445678899999999754321 2234678999
Q ss_pred EEEEEEeCCChhh-hhcHHHHH----------------------------------------------------------
Q psy125 84 CAIIMFDVTSRIT-YKNVPNWH---------------------------------------------------------- 104 (385)
Q Consensus 84 ~illV~d~~~~~~-~~~~~~~~---------------------------------------------------------- 104 (385)
++++|+|++++.. ...+...+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999987542 11111111
Q ss_pred --------HHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125 105 --------RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 105 --------~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l 167 (385)
..+.......|+++|+||+|+....... .+.. ...++++||+++.|+++++..|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~---~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD---LLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH---HHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 1111111246889999999986543222 2322 34689999999999999999998865
No 337
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.65 E-value=2.9e-15 Score=122.65 Aligned_cols=149 Identities=18% Similarity=0.207 Sum_probs=101.9
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCcccccc-------chhhhhccCcEE
Q psy125 14 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGG-------LRDGYYIQGQCA 85 (385)
Q Consensus 14 lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~-------~~~~~~~~~d~i 85 (385)
++|+.|+|||||+|++++.... ......+.+........... ...+.+|||||...... ....++.++|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVA-IVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccc-ccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999997664332 23334444443333333222 67899999999865443 233467899999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHH-----HHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS-----IVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
++|+|..+........ +..... ..+.|+++|+||+|+......... .........+++.+|++++.|+++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR--ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH--hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 9999999876654432 232322 258899999999998765433322 12233445689999999999999999
Q ss_pred HHHHHH
Q psy125 161 LWLARK 166 (385)
Q Consensus 161 ~~i~~~ 166 (385)
..+.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 988764
No 338
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.65 E-value=9.9e-16 Score=131.21 Aligned_cols=146 Identities=19% Similarity=0.195 Sum_probs=98.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc-----------------------------ccccceeeeEEEEEEeCCeeEEEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKK-----------------------------YVATLGVEVHPLVFHTNRGAIRFN 61 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~-----------------------------~~~~~g~t~~~~~~~~~~~~~~~~ 61 (385)
||+|+|++|+|||||+++|+...-.-. .....|+|++.......+++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999875432111 011267777777777777888999
Q ss_pred EEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh------hHHHH
Q psy125 62 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV------KAKSI 135 (385)
Q Consensus 62 i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~------~~~~~ 135 (385)
+|||||+..+.......+..+|++|+|+|+++....+. .....+.......++++|+||+|+..... ..+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~ 158 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL 158 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence 99999998765555566789999999999987532221 11112222222345778999999864211 12223
Q ss_pred HHHHhcC---CeEEEEcCCCCCChHH
Q psy125 136 VFHRKKN---LQYYDISAKSNYNFEK 158 (385)
Q Consensus 136 ~~~~~~~---~~~~~~Sa~~~~gi~~ 158 (385)
.+....+ .+++++||+++.|+.+
T Consensus 159 ~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 159 AFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 3333333 3589999999999864
No 339
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=118.56 Aligned_cols=155 Identities=13% Similarity=0.103 Sum_probs=108.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc----------ccccchhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE----------KFGGLRDG 77 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~----------~~~~~~~~ 77 (385)
...-|+++|++|||||||+|+|++.....-++.++|.|+......++.+ +.++|.||.- ........
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 3468999999999999999998887777888999999999999887776 7889999942 12223334
Q ss_pred hhc---cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHH-HHHH----HhcCCe--EEE
Q psy125 78 YYI---QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS-IVFH----RKKNLQ--YYD 147 (385)
Q Consensus 78 ~~~---~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~-~~~~----~~~~~~--~~~ 147 (385)
|+. +-.++++++|+..+..-.+. ..+..+.. .++|+++++||+|.......... .... ...... +..
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~ 176 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVL 176 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEE
Confidence 443 34567778888766433221 23333333 58999999999998764433221 1111 112222 778
Q ss_pred EcCCCCCChHHHHHHHHHHHh
Q psy125 148 ISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
.|+.++.|++++...|...+.
T Consensus 177 ~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 177 FSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EecccccCHHHHHHHHHHHhh
Confidence 899999999999999888763
No 340
>KOG3883|consensus
Probab=99.64 E-value=1.4e-14 Score=110.87 Aligned_cols=162 Identities=18% Similarity=0.304 Sum_probs=125.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCc--ccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc-ccchhhhhccCcE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-GGLRDGYYIQGQC 84 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~--~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~-~~~~~~~~~~~d~ 84 (385)
+..||+++|..++|||+++..++.++.... ..++...++....-...+..-.+.++||.|...+ ..+...|+.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 457999999999999999999888765433 3455554444444444445567899999998876 5677889999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
+++||+..++++|+.+..+..++.+. ...+|+++++||+|+.+... ......|+.......+++++.+....-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 99999999999998876655555543 24578999999999865433 334456777778899999999999999999
Q ss_pred HHHHHHHhc
Q psy125 161 LWLARKLIG 169 (385)
Q Consensus 161 ~~i~~~l~~ 169 (385)
..++..+.+
T Consensus 168 ~~l~~rl~~ 176 (198)
T KOG3883|consen 168 TYLASRLHQ 176 (198)
T ss_pred HHHHHhccC
Confidence 999888654
No 341
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.64 E-value=2.5e-15 Score=117.25 Aligned_cols=134 Identities=19% Similarity=0.229 Sum_probs=88.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc----ccccchhhhhccCcEEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE----KFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~----~~~~~~~~~~~~~d~il 86 (385)
||+|+|+.|||||||+++|.+.... +..|. .-...=.++||||.- .+.........++|+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq------------~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQ------------AIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccc------------eeEecccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 8999999999999999996653321 11111 111122458999953 22222334456899999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc-chhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
+|.|++++.+... ..+.+. -+.|+|-|++|+|+. +.........+.+..+. .+|.+|+.++.|+++++.+|.
T Consensus 69 ll~dat~~~~~~p-----P~fa~~-f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM-FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred EEecCCCCCccCC-----chhhcc-cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 9999998754321 112222 268999999999998 23333344445554444 789999999999999998764
No 342
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.64 E-value=2.4e-16 Score=126.87 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=74.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc-----ccCcccccccccCcEE
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE-----KFGGLRDGYYIQGQCA 300 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----~~~~~~~~~~~~~~~~ 300 (385)
||+++|.+|||||+|++++..+.+ .+.+|.+.++. . .+|||||+. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 799999999999999999887655 24444433321 1 589999983 3444433 47899999
Q ss_pred EEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHHH
Q psy125 301 IIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 301 ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|+|||++++.+|.+ |+++||++|.|++++|.+++
T Consensus 67 ilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 67 ALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred EEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 99999999999876 78899999999999999875
No 343
>KOG0075|consensus
Probab=99.64 E-value=1.5e-16 Score=120.82 Aligned_cols=110 Identities=23% Similarity=0.468 Sum_probs=99.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
++.+.++|-.++|||++.+....+.|.+...||.|...... +.+.+.+.+||.+||.+|+.+|..|+++++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 47899999999999999999888899999999998766544 44778899999999999999999999999999999
Q ss_pred EeCCChhhhhh----------------------------------------------------hheeccccCCCchHHHH
Q psy125 304 FDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFL 331 (385)
Q Consensus 304 ~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~ 331 (385)
.|..|+..+.- ++.+|+|...|++.+.+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~ 175 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLD 175 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHH
Confidence 99999887765 89999999999999999
Q ss_pred HHHHHH
Q psy125 332 WLARKL 337 (385)
Q Consensus 332 ~l~~~i 337 (385)
||+++.
T Consensus 176 Wli~hs 181 (186)
T KOG0075|consen 176 WLIEHS 181 (186)
T ss_pred HHHHHh
Confidence 999875
No 344
>KOG0076|consensus
Probab=99.64 E-value=7.8e-16 Score=120.57 Aligned_cols=158 Identities=23% Similarity=0.404 Sum_probs=120.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCC--------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFE--------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYY 79 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~--------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~ 79 (385)
..+.|+|+|.-++|||||+.+ +...+. ....++.|.. ...++-....+.+||.+|++..++++..|+
T Consensus 16 e~y~vlIlgldnAGKttfLe~-~Kt~~~~~~~~l~~~ki~~tvgLn----ig~i~v~~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEA-LKTDFSKAYGGLNPSKITPTVGLN----IGTIEVCNAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhheeeccccCCchhHHHH-HHHHHHhhhcCCCHHHeeccccee----ecceeeccceeEEEEcCChHHHHHHHHHHH
Confidence 458899999999999999986 322221 2233444433 344444577899999999999999999999
Q ss_pred ccCcEEEEEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH------hcCCeEEEEcCC
Q psy125 80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR------KKNLQYYDISAK 151 (385)
Q Consensus 80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~Sa~ 151 (385)
..+|++++|+|+.+++.++.....+..+.. ..++.|+++.+||.|+.+.....++..... ....++.++||.
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 999999999999999888776555544443 347899999999999987655444443322 233478999999
Q ss_pred CCCChHHHHHHHHHHHhcC
Q psy125 152 SNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~l~~~ 170 (385)
+|.|+.+-..++.+.+..+
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999998765
No 345
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.64 E-value=3.4e-15 Score=141.99 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=120.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc------cchhhhh-
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG------GLRDGYY- 79 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~------~~~~~~~- 79 (385)
|+..+|+++|.||||||||+|++.+.+ ..+.+.+|+|.+.+......++..+.++|.||.-... ...+.++
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 355789999999999999999966533 4567899999999999988888889999999963221 1223333
Q ss_pred -ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125 80 -IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFE 157 (385)
Q Consensus 80 -~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (385)
..+|+++-|+|+++.+.-- .+-.++.. -+.|+++++|++|...++- ..+...+.+..+.++++++|+++.|++
T Consensus 79 ~~~~D~ivnVvDAtnLeRnL---yltlQLlE--~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNL---YLTLQLLE--LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred cCCCCEEEEEcccchHHHHH---HHHHHHHH--cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 4579999999999865321 22223332 4889999999999866433 445666888899999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy125 158 KPFLWLARKLIGDP 171 (385)
Q Consensus 158 ~l~~~i~~~l~~~~ 171 (385)
+++..+.+....+.
T Consensus 154 ~l~~~i~~~~~~~~ 167 (653)
T COG0370 154 ELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHhccccc
Confidence 99999988765543
No 346
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.63 E-value=3.2e-15 Score=127.36 Aligned_cols=118 Identities=19% Similarity=0.352 Sum_probs=85.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccC-cEEEEEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQG-QCAIIMF 89 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~-d~illV~ 89 (385)
+|+|+|++|||||||+++|..+.+...+.++ ...............+.+.+||+||+.+++.....+++++ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999998887665554433 2222222222223467899999999998888778888898 9999999
Q ss_pred eCCCh-hhhhcHHHHHHHHHH----hcCCCCEEEEEeCCCCcchh
Q psy125 90 DVTSR-ITYKNVPNWHRDLVR----VCENIPIVLCGNKVDIKDRK 129 (385)
Q Consensus 90 d~~~~-~~~~~~~~~~~~l~~----~~~~~~~ilv~nK~Dl~~~~ 129 (385)
|+.+. ..+.....++..+.. .....|+++++||+|+....
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 99987 555554444433322 22579999999999986543
No 347
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.63 E-value=7.1e-15 Score=143.54 Aligned_cols=155 Identities=17% Similarity=0.087 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC---CCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGE---FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~---~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
+.|+++|+.++|||||+++|.+.. +... ...|+|.+.........+..+.+||+||++.+...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE--~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEE--KKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhH--hcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999976522 1111 23455555544444444588999999999988777777889999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhh----hHHHHHHHHhc----CCeEEEEcCCCCCChH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV----KAKSIVFHRKK----NLQYYDISAKSNYNFE 157 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~----~~~~~~~~~~~----~~~~~~~Sa~~~~gi~ 157 (385)
+|+|+++....+.. ..+..+ .. .++| +++|+||+|+.+... ..+...+.... ..+++++|++++.|++
T Consensus 79 LVVDa~~G~~~qT~-ehl~il-~~-lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 79 LVVDADEGVMTQTG-EHLAVL-DL-LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EEEECCCCCcHHHH-HHHHHH-HH-cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99999984322211 122222 22 3667 999999999875432 22233333322 4689999999999999
Q ss_pred HHHHHHHHHHhc
Q psy125 158 KPFLWLARKLIG 169 (385)
Q Consensus 158 ~l~~~i~~~l~~ 169 (385)
+++..|...+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999988776643
No 348
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.63 E-value=9.8e-15 Score=130.26 Aligned_cols=161 Identities=18% Similarity=0.188 Sum_probs=111.2
Q ss_pred cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCC
Q psy125 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS 152 (385)
Q Consensus 73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (385)
......+.++|++|+|+|+..+.+..+ ..+..+. .++|+++|+||+|+.+......+...+...+..++.+|+++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~ 87 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKK 87 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 345667789999999999988765443 1222222 47899999999999654333333334444456789999999
Q ss_pred CCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECC
Q psy125 153 NYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGD 232 (385)
Q Consensus 153 ~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 232 (385)
+.|+++++..+...+..... .. .........++++++|.
T Consensus 88 ~~gi~~L~~~i~~~~~~~~~------------------------------~~-----------~~~~~~~~~~~~~~vG~ 126 (276)
T TIGR03596 88 GKGVKKIIKAAKKLLKEKNE------------------------------KL-----------KAKGLKNRPIRAMIVGI 126 (276)
T ss_pred cccHHHHHHHHHHHHHHhhh------------------------------hh-----------hhccCCCCCeEEEEECC
Confidence 99999988887776532100 00 00011223589999999
Q ss_pred CCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125 233 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283 (385)
Q Consensus 233 ~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 283 (385)
+||||||++|++.... .......+|+|+..+.+.++. .+.++||||.
T Consensus 127 ~nvGKSslin~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 127 PNVGKSTLINRLAGKK-VAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCCHHHHHHHHhCCC-ccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 9999999999977544 334467788898888777754 3689999998
No 349
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.62 E-value=1.7e-14 Score=121.58 Aligned_cols=146 Identities=16% Similarity=0.070 Sum_probs=100.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFE--------------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG 73 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~--------------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~ 73 (385)
+.++|+++|+.++|||||+++|+..... .......|.|.+........+...+.++||||...+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 3579999999999999999998753110 01112567777777777777788999999999987766
Q ss_pred chhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhh-----hHHHHHHHHhc-----C
Q psy125 74 LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV-----KAKSIVFHRKK-----N 142 (385)
Q Consensus 74 ~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~-----~~~~~~~~~~~-----~ 142 (385)
.....+..+|++++|+|+......+. ...+..+.. .++| +++++||+|+..... ..++..+.... .
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 66677789999999999987533222 122222222 3566 778999999853221 12233333332 3
Q ss_pred CeEEEEcCCCCCCh
Q psy125 143 LQYYDISAKSNYNF 156 (385)
Q Consensus 143 ~~~~~~Sa~~~~gi 156 (385)
.+++++||.++.++
T Consensus 158 v~iipiSa~~g~n~ 171 (195)
T cd01884 158 TPIVRGSALKALEG 171 (195)
T ss_pred CeEEEeeCccccCC
Confidence 57999999998875
No 350
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.62 E-value=1.3e-14 Score=120.09 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=100.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc----------ccchhhhhc
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF----------GGLRDGYYI 80 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~----------~~~~~~~~~ 80 (385)
.|+++|++|+|||||+|.++++.+.....++.+.+........+. .+.+|||||.... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999887777777777888777665554433 8889999995432 122223333
Q ss_pred ---cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh----HHHHHHHH--hcCCeEEEEcCC
Q psy125 81 ---QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHR--KKNLQYYDISAK 151 (385)
Q Consensus 81 ---~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~----~~~~~~~~--~~~~~~~~~Sa~ 151 (385)
+.+++++++|.......... .....+.. .+.|+++++||+|+...... ........ ....+++++|++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 45678889988765322211 12222222 35789999999998543221 11222222 344588999999
Q ss_pred CCCChHHHHHHHHHH
Q psy125 152 SNYNFEKPFLWLARK 166 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~ 166 (385)
++.|+.+++..|.+.
T Consensus 155 ~~~~~~~l~~~l~~~ 169 (170)
T cd01876 155 KGQGIDELRALIEKW 169 (170)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999988765
No 351
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.62 E-value=1.6e-15 Score=125.12 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=78.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc---CccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 226 KCVLVGDGGTGKTTFVKRHLT---GEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
-|+++|.+|||||++++++.. +.+...+.++...+.....+.... ...+.+|||||+++|......+++++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 489999999999999999874 333333223222222223333332 4578999999999987666678899999999
Q ss_pred EEeCCC---hhhhhh-----------------------------------------------hheeccccCCCchHHHHH
Q psy125 303 MFDVTS---RITYKN-----------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 303 v~d~~~---~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|||+++ ..+++. +++|||++|.||+++|..
T Consensus 81 V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (164)
T cd04171 81 VVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEY 160 (164)
T ss_pred EEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHH
Confidence 999987 444443 677899999999988888
Q ss_pred HHH
Q psy125 333 LAR 335 (385)
Q Consensus 333 l~~ 335 (385)
+.+
T Consensus 161 l~~ 163 (164)
T cd04171 161 LDE 163 (164)
T ss_pred Hhh
Confidence 754
No 352
>KOG4423|consensus
Probab=99.62 E-value=1.2e-17 Score=132.06 Aligned_cols=118 Identities=36% Similarity=0.608 Sum_probs=109.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC-eeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
.+|+.++|..++||++++.+++...|...|..|+|.++.-+....+. ..+++.+||.+||++|..+...||+.+++..+
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 47899999999999999999999999999999999999877776654 45678999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------------hheeccccCCCchH
Q psy125 303 MFDVTSRITYKN------------------------------------------------------YYDISAKSNYNFEK 328 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v~~ 328 (385)
|||+|+..+|+. .+|||||.+.|+.|
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 999999999988 79999999999999
Q ss_pred HHHHHHHHHhcCC
Q psy125 329 PFLWLARKLIGDP 341 (385)
Q Consensus 329 ~f~~l~~~i~~~~ 341 (385)
+-..|+.+++-+.
T Consensus 185 a~r~lVe~~lvnd 197 (229)
T KOG4423|consen 185 AQRELVEKILVND 197 (229)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998875
No 353
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.62 E-value=1e-14 Score=130.53 Aligned_cols=148 Identities=20% Similarity=0.196 Sum_probs=106.3
Q ss_pred hhhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCC
Q psy125 76 DGYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNY 154 (385)
Q Consensus 76 ~~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (385)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+............+...+.+++.+|++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~ 150 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGE 150 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 34578999999999999887 66777777765543 5789999999999965433223333445567899999999999
Q ss_pred ChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCC
Q psy125 155 NFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGG 234 (385)
Q Consensus 155 gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~ 234 (385)
|+++++..|.. ..++++|.+|
T Consensus 151 gi~~L~~~L~~-----------------------------------------------------------k~~~~~G~sg 171 (287)
T cd01854 151 GLDELREYLKG-----------------------------------------------------------KTSVLVGQSG 171 (287)
T ss_pred cHHHHHhhhcc-----------------------------------------------------------ceEEEECCCC
Confidence 99876654331 2489999999
Q ss_pred CCHHHHHHHHhcCcccc------ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125 235 TGKTTFVKRHLTGEFEK------KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287 (385)
Q Consensus 235 vgks~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 287 (385)
|||||++|.++...... ......++|.....+.+.+.+ .++||||...+.
T Consensus 172 ~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 172 VGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred CCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 99999999977543221 112233466666666665443 589999987654
No 354
>PRK15494 era GTPase Era; Provisional
Probab=99.62 E-value=2e-15 Score=138.24 Aligned_cols=120 Identities=16% Similarity=0.231 Sum_probs=89.1
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc-cCcccc-------ccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRD-------GYY 294 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~-------~~~ 294 (385)
..++++++|.+|||||||++++++..+. .+++.+++|+......+...+..+.+|||||+.. +..+.. .++
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4579999999999999999999876653 4556666665544333333345689999999853 333332 247
Q ss_pred ccCcEEEEEEeCCChhhhhh---------------------------------------------hheeccccCCCchHH
Q psy125 295 IQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 295 ~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
.++|++|+|+|.++. |.+ ++++||++|.||+++
T Consensus 130 ~~aDvil~VvD~~~s--~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL 207 (339)
T PRK15494 130 HSADLVLLIIDSLKS--FDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGL 207 (339)
T ss_pred hhCCEEEEEEECCCC--CCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHH
Confidence 799999999998752 222 689999999999999
Q ss_pred HHHHHHHHhcCCCccc
Q psy125 330 FLWLARKLIGDPNLEF 345 (385)
Q Consensus 330 f~~l~~~i~~~~~~~~ 345 (385)
|.+|+..+...+....
T Consensus 208 ~~~L~~~l~~~~~~~~ 223 (339)
T PRK15494 208 LEYITSKAKISPWLYA 223 (339)
T ss_pred HHHHHHhCCCCCCCCC
Confidence 9999998876654433
No 355
>PRK10218 GTP-binding protein; Provisional
Probab=99.62 E-value=2.4e-14 Score=139.34 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=113.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc--CCCCCc------------ccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLT--GEFEKK------------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL 74 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~--~~~~~~------------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~ 74 (385)
..+|+++|+.++|||||+++|+. +.+... ...+.|.|.........++++.+++|||||+.++...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 45899999999999999999886 333222 1246788888888888888999999999999999888
Q ss_pred hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHHh-------cCCe
Q psy125 75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHRK-------KNLQ 144 (385)
Q Consensus 75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~-------~~~~ 144 (385)
+..+++.+|++|+|+|+.+....+.. .+...+.. .++|.++++||+|+..... ..++..+... ...+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P 161 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP 161 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHH-HHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence 88899999999999999875433322 22222222 5789999999999864322 2233333211 2357
Q ss_pred EEEEcCCCCC----------ChHHHHHHHHHHH
Q psy125 145 YYDISAKSNY----------NFEKPFLWLARKL 167 (385)
Q Consensus 145 ~~~~Sa~~~~----------gi~~l~~~i~~~l 167 (385)
++.+|+.+|. |+..+++.|...+
T Consensus 162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred EEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 8999999997 4667777666664
No 356
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.61 E-value=1.1e-14 Score=138.27 Aligned_cols=155 Identities=18% Similarity=0.144 Sum_probs=107.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcC--CCCC---------------------------cccccceeeeEEEEEEeCCe
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTG--EFEK---------------------------KYVATLGVEVHPLVFHTNRG 56 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~--~~~~---------------------------~~~~~~g~t~~~~~~~~~~~ 56 (385)
+.+.++|+++|+.++|||||+++|+.. .... ......|+|.+........+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 457799999999999999999998752 1110 01134577888887888888
Q ss_pred eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcc--hhh---
Q psy125 57 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD--RKV--- 130 (385)
Q Consensus 57 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~--~~~--- 130 (385)
.+.+.+|||||++.+.......+.++|++++|+|+++..++... ..+...+.......++++++||+|+.. ...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 89999999999987766555667899999999999987433111 111112222334457889999999863 111
Q ss_pred -hHHHHHHHHhcC-----CeEEEEcCCCCCChHHHH
Q psy125 131 -KAKSIVFHRKKN-----LQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 131 -~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 160 (385)
..+...+....+ .+++++||+++.|+.+..
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 223334444433 578999999999987643
No 357
>KOG1673|consensus
Probab=99.61 E-value=2.1e-15 Score=115.68 Aligned_cols=118 Identities=28% Similarity=0.433 Sum_probs=111.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
-.+||.++|++.+|||+++..+..+++.+.+..+.|..+..+.+.+.+..+.+.|||..|++++..+.+..+.++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
+||.|.+.+.+. .+.|||-.+.||+.+|
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 999999999887 7889999999999999
Q ss_pred HHHHHHHhcC
Q psy125 331 LWLARKLIGD 340 (385)
Q Consensus 331 ~~l~~~i~~~ 340 (385)
..+..++..-
T Consensus 179 K~vlAklFnL 188 (205)
T KOG1673|consen 179 KIVLAKLFNL 188 (205)
T ss_pred HHHHHHHhCC
Confidence 9999988664
No 358
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.60 E-value=2.2e-14 Score=128.71 Aligned_cols=162 Identities=20% Similarity=0.217 Sum_probs=112.1
Q ss_pred cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCC
Q psy125 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS 152 (385)
Q Consensus 73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (385)
......+.++|++|+|+|+..+.+..+ .++..+. .++|+++|+||+|+.+......+..++...+..++.+|+++
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~ 90 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKK 90 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 345567789999999999988765443 2222222 37899999999999654333334444444456789999999
Q ss_pred CCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECC
Q psy125 153 NYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGD 232 (385)
Q Consensus 153 ~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 232 (385)
+.|+++++..+...+.... ... .........++++++|.
T Consensus 91 ~~gi~~L~~~l~~~l~~~~-----------------------------~~~------------~~~~~~~~~~~~~~~G~ 129 (287)
T PRK09563 91 GQGVKKILKAAKKLLKEKN-----------------------------ERR------------KAKGMRPRAIRAMIIGI 129 (287)
T ss_pred cccHHHHHHHHHHHHHHHH-----------------------------hhh------------hhcccCcCceEEEEECC
Confidence 9999988887766652210 000 00011123579999999
Q ss_pred CCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc
Q psy125 233 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284 (385)
Q Consensus 233 ~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 284 (385)
+||||||++|.+.... .....+.+|+|.....+.++.. +.++||||..
T Consensus 130 pnvGKSsliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~~---~~l~DtPGi~ 177 (287)
T PRK09563 130 PNVGKSTLINRLAGKK-IAKTGNRPGVTKAQQWIKLGKG---LELLDTPGIL 177 (287)
T ss_pred CCCCHHHHHHHHhcCC-ccccCCCCCeEEEEEEEEeCCc---EEEEECCCcC
Confidence 9999999999977543 3455778899998887776543 6899999984
No 359
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.60 E-value=5.3e-15 Score=122.57 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=77.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc---------ccccc
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD---------GYYIQ 296 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------~~~~~ 296 (385)
+|+++|.+|||||++++++..+.+... +..+++............+.+.||||||+........ .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 689999999999999999987766422 2222333232223333457899999999843211000 11123
Q ss_pred CcEEEEEEeCCChhhh--hh---------------------------------------------hheeccccCCCchHH
Q psy125 297 GQCAIIMFDVTSRITY--KN---------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 297 ~~~~ilv~d~~~~~s~--~~---------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
+|++|+|||++++.+| +. |++|||++|.|++++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHH
Confidence 6899999999987654 21 899999999999999
Q ss_pred HHHHHHHHh
Q psy125 330 FLWLARKLI 338 (385)
Q Consensus 330 f~~l~~~i~ 338 (385)
|+++++.++
T Consensus 160 ~~~l~~~~~ 168 (168)
T cd01897 160 KNKACELLL 168 (168)
T ss_pred HHHHHHHhC
Confidence 999998763
No 360
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=4.3e-14 Score=112.68 Aligned_cols=160 Identities=23% Similarity=0.202 Sum_probs=116.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc-----ccccce---eeeEEEEEEeCC-eeEEEEEEeCCCccccccch
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-----YVATLG---VEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLR 75 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~-----~~~~~g---~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~~~~ 75 (385)
+.+...||+++|+.|+||||+++++........ ....-+ +|...-...... ++..+.+++|||+++++.++
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 346778999999999999999999665442111 001111 222222222222 23667899999999999999
Q ss_pred hhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhc--CCeEEEEcCCCC
Q psy125 76 DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSN 153 (385)
Q Consensus 76 ~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~ 153 (385)
.-+.+++.++++++|.+.+..+ .....+..+... ..+|++++.||.|+.+.....++.++.... ..+.+..++..+
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~ 163 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-NPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEG 163 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-cCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecccc
Confidence 9999999999999999998877 323444444332 228999999999999887777777777666 679999999999
Q ss_pred CChHHHHHHHHHH
Q psy125 154 YNFEKPFLWLARK 166 (385)
Q Consensus 154 ~gi~~l~~~i~~~ 166 (385)
.+..+++..+...
T Consensus 164 ~~~~~~L~~ll~~ 176 (187)
T COG2229 164 EGARDQLDVLLLK 176 (187)
T ss_pred hhHHHHHHHHHhh
Confidence 9999888877665
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.59 E-value=1.5e-13 Score=112.07 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=100.7
Q ss_pred cEEEEEEeCCChhhhhcHHHHHH-HHHHhcCCCCEEEEEeCCCCcchhhhHHHH-HHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 83 QCAIIMFDVTSRITYKNVPNWHR-DLVRVCENIPIVLCGNKVDIKDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 83 d~illV~d~~~~~~~~~~~~~~~-~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
|++++|+|++++.+... .++. ... ...++|+++|+||+|+........+. .+.......++.+|++++.|+++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~-~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLI-KEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHH-hcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHH
Confidence 67899999988765543 2232 111 22578999999999996544333322 2333345578999999999999988
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHH
Q psy125 161 LWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTF 240 (385)
Q Consensus 161 ~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~ 240 (385)
..+......+ .+..... .......+++++|.+|||||++
T Consensus 78 ~~i~~~~~~~-----------------------------~~~~~~~------------~~~~~~~~~~~~G~~~~GKstl 116 (155)
T cd01849 78 SAFTKQTNSN-----------------------------LKSYAKD------------GKLKKSITVGVIGYPNVGKSSV 116 (155)
T ss_pred HHHHHHhHHH-----------------------------HHHHHhc------------cccccCcEEEEEccCCCCHHHH
Confidence 8876653210 1111000 0012347899999999999999
Q ss_pred HHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125 241 VKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283 (385)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 283 (385)
+|.++.. .........|+|.....+..+. .+.++||||.
T Consensus 117 in~l~~~-~~~~~~~~~~~t~~~~~~~~~~---~~~liDtPG~ 155 (155)
T cd01849 117 INALLNK-LKLKVGNVPGTTTSQQEVKLDN---KIKLLDTPGI 155 (155)
T ss_pred HHHHHcc-ccccccCCCCcccceEEEEecC---CEEEEECCCC
Confidence 9997743 3333555667787777766553 3789999994
No 362
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.59 E-value=4.8e-14 Score=119.75 Aligned_cols=159 Identities=14% Similarity=0.036 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc----c-------hhhh
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----L-------RDGY 78 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----~-------~~~~ 78 (385)
++|+|+|.+|+|||||+|.|++...........+.|..+.......++..+.++||||...... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4899999999999999999988765544444567777777666666778999999999754321 0 1112
Q ss_pred hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcC---CCCEEEEEeCCCCcchh--------hhHHHHHHHHhcCCeEEE
Q psy125 79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDRK--------VKAKSIVFHRKKNLQYYD 147 (385)
Q Consensus 79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~---~~~~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~ 147 (385)
.++.|++|+|+++.. .+... ...+..+...+. ..++++++++.|..... .......+...++..++.
T Consensus 81 ~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 367899999999887 22211 122333332222 35788889988854321 123455566666777766
Q ss_pred EcC-----CCCCChHHHHHHHHHHHhcC
Q psy125 148 ISA-----KSNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 148 ~Sa-----~~~~gi~~l~~~i~~~l~~~ 170 (385)
++. ..+.++.+++..|.+.+..+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 654 45667888888888887763
No 363
>PRK00098 GTPase RsgA; Reviewed
Probab=99.58 E-value=4.1e-14 Score=127.45 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=100.7
Q ss_pred hhccCcEEEEEEeCCChhhhhc-HHHHHHHHHHhcCCCCEEEEEeCCCCcch-hhhHHHHHHHHhcCCeEEEEcCCCCCC
Q psy125 78 YYIQGQCAIIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIKDR-KVKAKSIVFHRKKNLQYYDISAKSNYN 155 (385)
Q Consensus 78 ~~~~~d~illV~d~~~~~~~~~-~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (385)
.+.++|.+++|+|+.++..... +..|+..+.. .++|+++|+||+|+... .....+...+...+.+++.+|++++.|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 3589999999999988765443 3556655443 57899999999999632 223334445556678999999999999
Q ss_pred hHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCC
Q psy125 156 FEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGT 235 (385)
Q Consensus 156 i~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~v 235 (385)
+++++..+.. ..++++|.+||
T Consensus 155 i~~L~~~l~g-----------------------------------------------------------k~~~~~G~sgv 175 (298)
T PRK00098 155 LDELKPLLAG-----------------------------------------------------------KVTVLAGQSGV 175 (298)
T ss_pred HHHHHhhccC-----------------------------------------------------------ceEEEECCCCC
Confidence 9877665311 24889999999
Q ss_pred CHHHHHHHHhcCccccccc-------cceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125 236 GKTTFVKRHLTGEFEKKYV-------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 286 (385)
Q Consensus 236 gks~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 286 (385)
|||||+|.++.... .... ...++|.....+.+.+.. .|+||||...+
T Consensus 176 GKStlin~l~~~~~-~~~g~v~~~~~~G~htT~~~~~~~~~~~~---~~~DtpG~~~~ 229 (298)
T PRK00098 176 GKSTLLNALAPDLE-LKTGEISEALGRGKHTTTHVELYDLPGGG---LLIDTPGFSSF 229 (298)
T ss_pred CHHHHHHHHhCCcC-CCCcceeccCCCCCcccccEEEEEcCCCc---EEEECCCcCcc
Confidence 99999999774322 1111 122356666666665443 68999998754
No 364
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.58 E-value=9e-15 Score=121.13 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=85.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
.++++|.+|+|||++++++..+.+.....++...+.....+..+ +....+.+|||||+..|..++..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887765533333222222333332 23567899999999999888888999999999999
Q ss_pred eCCCh---hhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 305 DVTSR---ITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 305 d~~~~---~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|+++. .++.. +++|||++|.||+++|++|
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T cd01887 82 AADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAI 161 (168)
T ss_pred ECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHH
Confidence 99983 33322 4688999999999999999
Q ss_pred HHHH
Q psy125 334 ARKL 337 (385)
Q Consensus 334 ~~~i 337 (385)
++..
T Consensus 162 ~~~~ 165 (168)
T cd01887 162 LLLA 165 (168)
T ss_pred HHhh
Confidence 8753
No 365
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.57 E-value=3.6e-14 Score=138.30 Aligned_cols=154 Identities=16% Similarity=0.219 Sum_probs=112.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCCCc------------ccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchh
Q psy125 11 KCVLVGDGGTGKTTFVKRHLT--GEFEKK------------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD 76 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~--~~~~~~------------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~ 76 (385)
+|+++|+.++|||||+++|+. +.+... .....|.|.......+.++++.+++|||||+.++.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 699999999999999999885 222211 123457777777777788889999999999998888888
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHH-------hcCCeEE
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHR-------KKNLQYY 146 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~-------~~~~~~~ 146 (385)
.++..+|++++|+|+.+....+ ...++..+.. .++|+++++||+|+..... ..+...++. ....+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~q-T~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl 159 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQ-TRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIV 159 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHH-HHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEE
Confidence 8999999999999998743222 2344444433 4789999999999854322 233333332 1245789
Q ss_pred EEcCCCCC----------ChHHHHHHHHHHH
Q psy125 147 DISAKSNY----------NFEKPFLWLARKL 167 (385)
Q Consensus 147 ~~Sa~~~~----------gi~~l~~~i~~~l 167 (385)
.+||+++. |+..++..|...+
T Consensus 160 ~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 160 YASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred echhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 99999985 6888888888775
No 366
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.57 E-value=1.5e-14 Score=118.12 Aligned_cols=109 Identities=28% Similarity=0.458 Sum_probs=94.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|+|||+|++++..+.+...+.++.+.+.....+..++..+.+.+|||||+..+..++..+++.++++++++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 68999999999999999999988877777777777776666667766688999999999999999999999999999999
Q ss_pred eCCCh-hhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 305 DVTSR-ITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 305 d~~~~-~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|++.. .++.+ ++++||++|.|+.++|.+|
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 99877 44443 7999999999999999886
No 367
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=9.5e-14 Score=120.81 Aligned_cols=157 Identities=19% Similarity=0.171 Sum_probs=114.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc-----ccc---hhhhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-----GGL---RDGYY 79 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~-----~~~---~~~~~ 79 (385)
..+.|++.|.||||||||++++.+ ..+.+.+++.+|.....+....+..+++++||||.-+. ..+ ....+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~--AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTT--AKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhc--CCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 346899999999999999999555 44667788888999999999999999999999996321 111 11111
Q ss_pred -ccCcEEEEEEeCCChhhh--hcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHH-HHHhcCCeEEEEcCCCCCC
Q psy125 80 -IQGQCAIIMFDVTSRITY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYN 155 (385)
Q Consensus 80 -~~~d~illV~d~~~~~~~--~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~g 155 (385)
.=.++++|++|.+...++ +....++..+...+. .|+++|.||+|....+...+... +....+.....+++..+.+
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCG 323 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhh
Confidence 236788999999886554 445567777776655 89999999999875544333332 4444555677888888889
Q ss_pred hHHHHHHHHHHH
Q psy125 156 FEKPFLWLARKL 167 (385)
Q Consensus 156 i~~l~~~i~~~l 167 (385)
++.....+....
T Consensus 324 ~d~~~~~v~~~a 335 (346)
T COG1084 324 LDKLREEVRKTA 335 (346)
T ss_pred HHHHHHHHHHHh
Confidence 888877776664
No 368
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.57 E-value=5.8e-14 Score=136.27 Aligned_cols=156 Identities=21% Similarity=0.198 Sum_probs=100.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccceeeeEEEEEEe------------CCeeEEEEEEeCCCcccc
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHT------------NRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g~t~~~~~~~~------------~~~~~~~~i~Dt~g~~~~ 71 (385)
+...|+++|++|+|||||+|+|.+..+... ...+.|.+........ ......+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 456899999999999999999877654322 2233333322111100 000123889999999998
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hH----H
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KA----K 133 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~----~ 133 (385)
..++..++..+|++++|+|+++....+... .+..+.. .+.|+++++||+|+..... .. .
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e-~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~ 159 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQE-ALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQN 159 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHH-HHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHH
Confidence 888888889999999999998743222211 1122222 4789999999999853110 00 0
Q ss_pred H--------HHHHH--------------hcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 134 S--------IVFHR--------------KKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 134 ~--------~~~~~--------------~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
. ..+.. ....+++++||++|.|+++++.+|...
T Consensus 160 ~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 160 LDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0 00111 113588999999999999999887643
No 369
>KOG0076|consensus
Probab=99.57 E-value=2.5e-15 Score=117.74 Aligned_cols=111 Identities=26% Similarity=0.521 Sum_probs=95.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccc--------cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccccccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFE--------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ 296 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 296 (385)
+-++|+|..++|||+++.+ +...|. ....+|.|.....+.+. ...+.+||..||+..+++|..||..
T Consensus 18 y~vlIlgldnAGKttfLe~-~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEA-LKTDFSKAYGGLNPSKITPTVGLNIGTIEVC----NAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhheeeccccCCchhHHHH-HHHHHHhhhcCCCHHHeecccceeecceeec----cceeEEEEcCChHHHHHHHHHHHHH
Confidence 6799999999999999987 333333 34566777666666553 4568999999999999999999999
Q ss_pred CcEEEEEEeCCChhhhhh-----------------------------------------------------hheeccccC
Q psy125 297 GQCAIIMFDVTSRITYKN-----------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 297 ~~~~ilv~d~~~~~s~~~-----------------------------------------------------~~e~Sak~~ 323 (385)
|||+|+|+|.+|++.|++ |..+||.+|
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 999999999999999988 899999999
Q ss_pred CCchHHHHHHHHHHhcC
Q psy125 324 YNFEKPFLWLARKLIGD 340 (385)
Q Consensus 324 ~~v~~~f~~l~~~i~~~ 340 (385)
.||+|...|+++.+.++
T Consensus 173 egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 173 EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999999776
No 370
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.56 E-value=6.2e-14 Score=129.46 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=110.1
Q ss_pred cccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHH----HHHHhcCC
Q psy125 69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSI----VFHRKKNL 143 (385)
Q Consensus 69 ~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~----~~~~~~~~ 143 (385)
+.+..+...+...++++++|+|+.+... .|...+.....+.|+++|+||+|+..... ..... ++....+.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~ 125 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGL 125 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 4566666777789999999999977542 34444444445789999999999864322 12222 23444444
Q ss_pred ---eEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcC
Q psy125 144 ---QYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEM 220 (385)
Q Consensus 144 ---~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 220 (385)
.++.+||+++.|+++++..|.+...
T Consensus 126 ~~~~i~~vSAk~g~gv~eL~~~l~~~~~---------------------------------------------------- 153 (360)
T TIGR03597 126 KPVDIILVSAKKGNGIDELLDKIKKARN---------------------------------------------------- 153 (360)
T ss_pred CcCcEEEecCCCCCCHHHHHHHHHHHhC----------------------------------------------------
Confidence 5899999999999998887755310
Q ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCcc----ccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125 221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEF----EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 286 (385)
Q Consensus 221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 286 (385)
..+++++|.+|||||||+|.++.... ....++.+|+|.....+.+++. +.++||||....
T Consensus 154 ---~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~~ 217 (360)
T TIGR03597 154 ---KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIINS 217 (360)
T ss_pred ---CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCCh
Confidence 13799999999999999999875322 2356677888988887776443 479999997543
No 371
>KOG0074|consensus
Probab=99.56 E-value=1.4e-14 Score=109.33 Aligned_cols=111 Identities=25% Similarity=0.373 Sum_probs=94.7
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
.+++|+.++|-.|+|||+++.+ +.++-+....||-|.. .+.+..+ +...+++||..||...+..|+.||.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn--~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFN--TKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcc--eEEEeec-CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence 5679999999999999999999 5567777778887654 4444444 3577999999999999999999999999999
Q ss_pred EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125 302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
+|+|.+|+..|++ +.+|||.++.++...
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence 9999999999998 778999999998888
Q ss_pred HHHHHHH
Q psy125 330 FLWLARK 336 (385)
Q Consensus 330 f~~l~~~ 336 (385)
..|+...
T Consensus 171 ~~wv~sn 177 (185)
T KOG0074|consen 171 SDWVQSN 177 (185)
T ss_pred chhhhcC
Confidence 8887753
No 372
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.56 E-value=2.9e-14 Score=123.07 Aligned_cols=146 Identities=19% Similarity=0.149 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----------------------------CCcccccceeeeEEEEEEeCCeeEEEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYVATLGVEVHPLVFHTNRGAIRFN 61 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~-----------------------------~~~~~~~~g~t~~~~~~~~~~~~~~~~ 61 (385)
.|+++|+.|+|||||+.+|+...- ........|+|++........++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999863210 011123456778877777878889999
Q ss_pred EEeCCCccccccchhhhhccCcEEEEEEeCCChhh-----h-hcHHHHHHHHHHhcCCCCEEEEEeCCCCcc----hhh-
Q psy125 62 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRIT-----Y-KNVPNWHRDLVRVCENIPIVLCGNKVDIKD----RKV- 130 (385)
Q Consensus 62 i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~-----~-~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~----~~~- 130 (385)
+|||||+..+.......+..+|++++|+|+.+... . ........ +.......|+++++||+|+.. ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHcCCCeEEEEEEccccccccccHHHH
Confidence 99999987766555666788999999999988421 1 11111111 222223468899999999862 111
Q ss_pred ---hHHHHHHHHhc-----CCeEEEEcCCCCCChH
Q psy125 131 ---KAKSIVFHRKK-----NLQYYDISAKSNYNFE 157 (385)
Q Consensus 131 ---~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~ 157 (385)
..++..+.... ..+++++||++|.|+.
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11222222222 2579999999999975
No 373
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.56 E-value=6.5e-14 Score=131.79 Aligned_cols=159 Identities=17% Similarity=0.141 Sum_probs=102.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc--cccceeeeEEEEEE----------------e----CC------eeE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFH----------------T----NR------GAI 58 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~--~~~~g~t~~~~~~~----------------~----~~------~~~ 58 (385)
++.++|+++|..++|||||+++|.+ .+.... ....|.|....... . +. ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~-~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTG-VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhC-eecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 4678999999999999999999643 221110 01112222211100 0 00 146
Q ss_pred EEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh----HHH
Q psy125 59 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKS 134 (385)
Q Consensus 59 ~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~----~~~ 134 (385)
.+.+|||||++.+...+...+..+|++++|+|+++..........+..+ ......++++++||+|+.+.... .+.
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 7999999999988777777778899999999999753111112222222 22234578999999998753321 222
Q ss_pred HHHHHh---cCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125 135 IVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 135 ~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~l 167 (385)
..+... ...+++++|++++.|+++++..|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 222222 145799999999999999999998765
No 374
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.56 E-value=1.4e-14 Score=129.13 Aligned_cols=115 Identities=15% Similarity=0.065 Sum_probs=86.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc-c-------cccccccC
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-L-------RDGYYIQG 297 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~-------~~~~~~~~ 297 (385)
+|+++|.+|||||||+|++++..+ ..+++.+++|..............+.+|||||+..... + ...++.++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~-~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI-SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE-eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 689999999999999999886654 33455556666543332222345689999999864321 1 22467899
Q ss_pred cEEEEEEeCCChhhhhh-------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 298 QCAIIMFDVTSRITYKN-------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 298 ~~~ilv~d~~~~~s~~~-------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|++++|+|+++..+++. ++++||++|.|+++++.+|.
T Consensus 81 Dvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~ 160 (270)
T TIGR00436 81 DLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIE 160 (270)
T ss_pred CEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence 99999999998877643 68899999999999999999
Q ss_pred HHHhcCC
Q psy125 335 RKLIGDP 341 (385)
Q Consensus 335 ~~i~~~~ 341 (385)
+.+...+
T Consensus 161 ~~l~~~~ 167 (270)
T TIGR00436 161 VHLPEGP 167 (270)
T ss_pred HhCCCCC
Confidence 9875543
No 375
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.55 E-value=1e-14 Score=121.12 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=75.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEE--EEeCCeeEEEEEeeCCCcc----ccCcccccccc---c
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--FHTNRGAIRFNVWDTAGQE----KFGGLRDGYYI---Q 296 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~Dt~G~~----~~~~~~~~~~~---~ 296 (385)
.|+++|.+|||||||++++..... ......+++..... +..++ ...+.+|||||+. .+..+...+++ .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 589999999999999999875432 11122222322211 12222 2468999999974 22334444444 5
Q ss_pred CcEEEEEEeCCCh-hhhhh--------------------------------------------------hheeccccCCC
Q psy125 297 GQCAIIMFDVTSR-ITYKN--------------------------------------------------YYDISAKSNYN 325 (385)
Q Consensus 297 ~~~~ilv~d~~~~-~s~~~--------------------------------------------------~~e~Sak~~~~ 325 (385)
+|++++|||++++ .++++ +++|||++|.|
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 9999999999998 55543 78999999999
Q ss_pred chHHHHHHHHH
Q psy125 326 FEKPFLWLARK 336 (385)
Q Consensus 326 v~~~f~~l~~~ 336 (385)
|+++|.++++.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 376
>KOG1191|consensus
Probab=99.55 E-value=3.9e-14 Score=128.99 Aligned_cols=161 Identities=14% Similarity=0.167 Sum_probs=113.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc-cc--------chhhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-GG--------LRDGY 78 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~-~~--------~~~~~ 78 (385)
..+.|+|+|+||||||||+|. +.+.....++|.+|+|++.....++-.++.+.+.||.|.... .. .....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNa-L~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNA-LSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHH-HhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 458999999999999999999 667788899999999999999999999999999999997541 11 22345
Q ss_pred hccCcEEEEEEeCCC--hhhhhcHHHHHHHHHH-h------cCCCCEEEEEeCCCCcchhhh-HH-HHHHHHhc---CC-
Q psy125 79 YIQGQCAIIMFDVTS--RITYKNVPNWHRDLVR-V------CENIPIVLCGNKVDIKDRKVK-AK-SIVFHRKK---NL- 143 (385)
Q Consensus 79 ~~~~d~illV~d~~~--~~~~~~~~~~~~~l~~-~------~~~~~~ilv~nK~Dl~~~~~~-~~-~~~~~~~~---~~- 143 (385)
+.++|++++|+|+.. .++...+.+.+..... . ....+++++.||.|+...-.. .. ...+.... ..
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP 425 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence 678999999999943 3222222223322211 1 123788999999998654111 11 01111111 12
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 144 QYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 144 ~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
....+|+.++.|++++...+...+..
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHHH
Confidence 34458999999999999888877654
No 377
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.55 E-value=2.2e-13 Score=115.65 Aligned_cols=154 Identities=17% Similarity=0.205 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccce---eeeEEEEEEeCCeeEEEEEEeCCCccccccchhhh-----hc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG---VEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGY-----YI 80 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g---~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~-----~~ 80 (385)
+++|+++|++|||||||+|+|++...........+ ++.....+... ....+.+|||||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 37999999999999999999887554433333333 12222222111 13468999999975433222223 46
Q ss_pred cCcEEEEEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh-------------hhHHHHH----HHHh--
Q psy125 81 QGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK-------------VKAKSIV----FHRK-- 140 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~-------------~~~~~~~----~~~~-- 140 (385)
++|++++|.+- .+...+ .++..+.. .+.|+++|+||+|+.... ...+... ....
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 78888887432 233223 34444443 267999999999984211 1111111 1111
Q ss_pred -cCCeEEEEcCC--CCCChHHHHHHHHHHHhc
Q psy125 141 -KNLQYYDISAK--SNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 141 -~~~~~~~~Sa~--~~~gi~~l~~~i~~~l~~ 169 (385)
...+++.+|+. .+.+...+...|...+..
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 12478899998 578899999988888754
No 378
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.54 E-value=4.6e-14 Score=134.09 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=88.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc--------ccccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYY 294 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~ 294 (385)
..++++++|.+||||||++|+++.... ....+.+|+|.......+...+..+.+|||||++.+... ...++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 358999999999999999999886543 223344555554443333323456899999998765432 22368
Q ss_pred ccCcEEEEEEeCCChhhhhh----------------------------------hheeccccCCCchHHHHHHHHHHhc
Q psy125 295 IQGQCAIIMFDVTSRITYKN----------------------------------YYDISAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 295 ~~~~~~ilv~d~~~~~s~~~----------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~ 339 (385)
+++|++|+|||++++.++++ ++++||++|.|++++|.+|.+.+..
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLEEENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhhhccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 89999999999999877655 5789999999999999999998854
No 379
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.54 E-value=2.8e-14 Score=122.17 Aligned_cols=113 Identities=18% Similarity=0.088 Sum_probs=80.1
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccc--cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc--ccc------
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--LRD------ 291 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~------ 291 (385)
....+|+++|.+|||||||++++....+... +.+|.. .....+...+. ..+.+|||||+..... +..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH
Confidence 3457999999999999999999887654322 222322 22223333332 3688999999733211 111
Q ss_pred cccccCcEEEEEEeCCChhhhhh-------------------------------------------hheeccccCCCchH
Q psy125 292 GYYIQGQCAIIMFDVTSRITYKN-------------------------------------------YYDISAKSNYNFEK 328 (385)
Q Consensus 292 ~~~~~~~~~ilv~d~~~~~s~~~-------------------------------------------~~e~Sak~~~~v~~ 328 (385)
..+.++|++++|+|++++.++.+ +++|||++|.||++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDE 195 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHH
Confidence 13678999999999999877643 89999999999999
Q ss_pred HHHHHHHHH
Q psy125 329 PFLWLARKL 337 (385)
Q Consensus 329 ~f~~l~~~i 337 (385)
+|.+|.+.+
T Consensus 196 l~~~L~~~~ 204 (204)
T cd01878 196 LLEAIEELL 204 (204)
T ss_pred HHHHHHhhC
Confidence 999998764
No 380
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.54 E-value=2.2e-13 Score=117.41 Aligned_cols=152 Identities=15% Similarity=0.182 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccc-----------------------cceeeeEEEE-------------EEeC
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVA-----------------------TLGVEVHPLV-------------FHTN 54 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~-----------------------~~g~t~~~~~-------------~~~~ 54 (385)
||+++|+.++|||||+++|..+.+...... ..|.+..-.. ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999887655321110 1111100000 0111
Q ss_pred CeeEEEEEEeCCCccccccchhhhh--ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH
Q psy125 55 RGAIRFNVWDTAGQEKFGGLRDGYY--IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA 132 (385)
Q Consensus 55 ~~~~~~~i~Dt~g~~~~~~~~~~~~--~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~ 132 (385)
..+..++++||||+.++.......+ ..+|++++|+|++.....+. ..++..+.. .++|+++++||+|+.+.....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~--~~ip~ivvvNK~D~~~~~~~~ 157 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA--LNIPVFVVVTKIDLAPANILQ 157 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCEEEEEECccccCHHHHH
Confidence 2356789999999987755443334 36899999999886543221 223333332 478999999999986543221
Q ss_pred ----HHHHHHH--------------------------hcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 133 ----KSIVFHR--------------------------KKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 133 ----~~~~~~~--------------------------~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
++..+.. ....+++.+|+.++.|+++++..|..
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1222221 11238899999999999988877644
No 381
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.54 E-value=2.6e-13 Score=132.38 Aligned_cols=155 Identities=23% Similarity=0.248 Sum_probs=98.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccceeeeEEEEEEe--CCee-----E-----EEEEEeCCCc
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHT--NRGA-----I-----RFNVWDTAGQ 68 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g~t~~~~~~~~--~~~~-----~-----~~~i~Dt~g~ 68 (385)
|..+++.|+++|+.|+|||||+++|.+...... ...+.|.+........ .... . .+.+|||||+
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 566778999999999999999999754332111 1223333322111100 0000 1 2689999999
Q ss_pred cccccchhhhhccCcEEEEEEeCCCh---hhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---------------
Q psy125 69 EKFGGLRDGYYIQGQCAIIMFDVTSR---ITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------- 130 (385)
Q Consensus 69 ~~~~~~~~~~~~~~d~illV~d~~~~---~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------- 130 (385)
+.+..++...+..+|++++|+|+++. .+++.+ ..+.. .+.|+++++||+|+.....
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAI----NILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 99888877788899999999999873 333222 22222 5789999999999842100
Q ss_pred ---hH-------HHHHHHHh---------------cCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 131 ---KA-------KSIVFHRK---------------KNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 131 ---~~-------~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
.. +....... ...+++++||.++.|+++++..+..
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 00011111 2347899999999999998877754
No 382
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.53 E-value=1.6e-13 Score=129.07 Aligned_cols=164 Identities=17% Similarity=0.140 Sum_probs=102.6
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc--ccccceeeeEEEEEEeC------------------------
Q psy125 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLVFHTN------------------------ 54 (385)
Q Consensus 1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~--~~~~~g~t~~~~~~~~~------------------------ 54 (385)
|.=+-..+.++|+++|+.++|||||+.+|.+ .+... .....|.|.........
T Consensus 1 ~~~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~-~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (411)
T PRK04000 1 MMWEKVQPEVNIGMVGHVDHGKTTLVQALTG-VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGS 79 (411)
T ss_pred CCcccCCCcEEEEEEccCCCCHHHHHHHhhC-eecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccc
Confidence 3334456789999999999999999998643 21111 11123334332211100
Q ss_pred --CeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh
Q psy125 55 --RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK 131 (385)
Q Consensus 55 --~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~ 131 (385)
.....+++|||||++.+..........+|++++|+|++++. ..+.. ..+..+ ......++++|+||+|+.+....
T Consensus 80 ~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l~~l-~~~~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 80 ETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHLMAL-DIIGIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred ccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHHHHH-HHcCCCcEEEEEEeeccccchhH
Confidence 01367899999999876654445556789999999999653 22211 112222 22233468999999998653221
Q ss_pred ----HHHHHHHHh---cCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125 132 ----AKSIVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 132 ----~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~l 167 (385)
.+...+... ...+++++||+++.|+++++..|...+
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 222223222 246899999999999999999988765
No 383
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.53 E-value=1.2e-14 Score=123.26 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=71.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc--Ccccccc------------ccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLT--GEFEKKY------------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR 290 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 290 (385)
-+|+++|.++||||+|+++++. +.|...+ .++.|.++......+..+.+.+.+|||||+++|....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999986 5554433 2456777777766777778889999999999999999
Q ss_pred ccccccCcEEEEEEeCCCh
Q psy125 291 DGYYIQGQCAIIMFDVTSR 309 (385)
Q Consensus 291 ~~~~~~~~~~ilv~d~~~~ 309 (385)
..+++++|++++|||+++.
T Consensus 83 ~~~~~~~d~~ilV~d~~~~ 101 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG 101 (194)
T ss_pred HHHHHhcCEEEEEEECCCC
Confidence 9999999999999999983
No 384
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.53 E-value=1.2e-13 Score=120.24 Aligned_cols=135 Identities=17% Similarity=0.150 Sum_probs=91.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC----------c------ccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEK----------K------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL 74 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~----------~------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~ 74 (385)
.|+++|+.|+|||||+++|+...-.. . .....|.+.........+++..+++|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 48999999999999999987632110 0 0123445555566666778899999999999888777
Q ss_pred hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEE
Q psy125 75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 148 (385)
Q Consensus 75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (385)
...+++.+|++++|+|+.+....+ ...+...+.. .++|+++++||+|+..........++....+..++.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~--~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~ 151 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK--LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPM 151 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH--cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEE
Confidence 888899999999999998864432 2233333332 4789999999999875333222233333334444433
No 385
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.53 E-value=5.9e-15 Score=126.23 Aligned_cols=157 Identities=26% Similarity=0.242 Sum_probs=97.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
-++|+||||+|||||++.+++ ..++..+.+.+......+... ....+|.+|.. -+|
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG------------------ll~p~~G~i~~~g~~~~~~~~--~~~IgYVPQ~~----~~d 87 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG------------------LLKPSSGEIKIFGKPVRKRRK--RLRIGYVPQKS----SVD 87 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC------------------CCcCCcceEEEcccccccccc--CCeEEEcCccc----ccC
Confidence 479999999999999999888 566666666665444333221 23456666642 122
Q ss_pred CCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhcC
Q psy125 91 VTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~ 170 (385)
.+-|.+..++ . .........++--.++.|...-....+...+......++-+ .+|++.++..||+++..+
T Consensus 88 ~~fP~tV~d~---V--~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~ 157 (254)
T COG1121 88 RSFPITVKDV---V--LLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQN 157 (254)
T ss_pred CCCCcCHHHH---H--HccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccC
Confidence 2222222111 1 11112333343334555421111111111222222334444 459999999999999999
Q ss_pred CCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 171 PNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 171 ~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
|++++ +|||+.+.|+..+..+.+.|.+...+
T Consensus 158 p~lll-----LDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 158 PDLLL-----LDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred CCEEE-----ecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 99999 99999999999999999999988776
No 386
>PRK12735 elongation factor Tu; Reviewed
Probab=99.53 E-value=2.5e-13 Score=127.42 Aligned_cols=157 Identities=13% Similarity=0.025 Sum_probs=104.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC------CCC--------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTG------EFE--------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~------~~~--------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~ 72 (385)
.+.++|+++|+.++|||||+++|+.. ... .......|.|.+........+...+.++||||+..+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56799999999999999999998752 110 1112356778777766666677889999999998776
Q ss_pred cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEE-EEEeCCCCcchhh-----hHHHHHHHHhc-----
Q psy125 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV-LCGNKVDIKDRKV-----KAKSIVFHRKK----- 141 (385)
Q Consensus 73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~i-lv~nK~Dl~~~~~-----~~~~~~~~~~~----- 141 (385)
......+.++|++++|+|+.+....+. ...+..+. ..++|.+ +++||+|+..... ..+...+....
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~--~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~ 166 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR--QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD 166 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHH--HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcC
Confidence 655666778999999999987533222 12222222 1467755 6799999864322 11233333332
Q ss_pred CCeEEEEcCCCCC----------ChHHHHHHHHHH
Q psy125 142 NLQYYDISAKSNY----------NFEKPFLWLARK 166 (385)
Q Consensus 142 ~~~~~~~Sa~~~~----------gi~~l~~~i~~~ 166 (385)
..+++++|+.++. ++..++..|...
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 167 DTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred ceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 2578999999874 455555555543
No 387
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.52 E-value=3.6e-13 Score=132.02 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccceeeeEEEEEEeCC-eeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+-|+++|+.++|||||+++|.+-.... ......|.|.+........ .+..+.+|||||++++.......+.++|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 358999999999999999966422111 1122346666554433322 34568999999999887666677889999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhh----hHHHHHHHHhcC---CeEEEEcCCCCCChHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV----KAKSIVFHRKKN---LQYYDISAKSNYNFEKP 159 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l 159 (385)
|+|+++....+.. ..+. +... .+.| +++|+||+|+.+... ..++..+....+ .+++++|++++.|++++
T Consensus 81 VVda~eg~~~qT~-ehl~-il~~-lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L 157 (614)
T PRK10512 81 VVACDDGVMAQTR-EHLA-ILQL-TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDAL 157 (614)
T ss_pred EEECCCCCcHHHH-HHHH-HHHH-cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHH
Confidence 9999875332221 1222 2222 2455 579999999865322 222333333322 57999999999999999
Q ss_pred HHHHHHHH
Q psy125 160 FLWLARKL 167 (385)
Q Consensus 160 ~~~i~~~l 167 (385)
+..|....
T Consensus 158 ~~~L~~~~ 165 (614)
T PRK10512 158 REHLLQLP 165 (614)
T ss_pred HHHHHHhh
Confidence 99998754
No 388
>KOG1489|consensus
Probab=99.52 E-value=2.7e-13 Score=116.95 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=104.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-EEEEEEeCCCccccccch----hh---hhccC
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQEKFGGLR----DG---YYIQG 82 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-~~~~i~Dt~g~~~~~~~~----~~---~~~~~ 82 (385)
.|+|||-||+|||||+|+|..-+ +.+..+..+|..+....+..+. ..+++-|.||......+. .. .+..+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 57999999999999999955533 3555666677777666555443 349999999976443332 22 34679
Q ss_pred cEEEEEEeCCCh---hhhhcHHHHHHHH---HHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcC-CeEEEEcCCCCCC
Q psy125 83 QCAIIMFDVTSR---ITYKNVPNWHRDL---VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN-LQYYDISAKSNYN 155 (385)
Q Consensus 83 d~illV~d~~~~---~~~~~~~~~~~~l---~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 155 (385)
..+++|+|++.+ .-++.+..+..++ .+...+.|.++|+||+|+.+.+... +.++.+... ..++++||+.+.|
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH-HHHHHHHcCCCcEEEeeeccccc
Confidence 999999999988 4454444333333 3345688999999999986433221 233443333 3599999999999
Q ss_pred hHHHHHHHHH
Q psy125 156 FEKPFLWLAR 165 (385)
Q Consensus 156 i~~l~~~i~~ 165 (385)
+++++..|-.
T Consensus 355 l~~ll~~lr~ 364 (366)
T KOG1489|consen 355 LEELLNGLRE 364 (366)
T ss_pred hHHHHHHHhh
Confidence 9988876643
No 389
>KOG0072|consensus
Probab=99.52 E-value=5.6e-14 Score=106.54 Aligned_cols=157 Identities=20% Similarity=0.323 Sum_probs=115.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||.++|--|+||||++-++-.+ ......|++|.......+ ++.++.+||.+|+-..+..|+.|+.+.+++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvg-evvttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVG-EVVTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccC-cccccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 6789999999999999998884333 334445677766554444 78999999999999999999999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHH-----HHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
|+|.+|.....-....+..+.. ...+..+++++||.|........+.. .-.+.....++..||.++.|+++.+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 9999987654333322222222 23466778899999976543333222 1223344689999999999999999
Q ss_pred HHHHHHHhc
Q psy125 161 LWLARKLIG 169 (385)
Q Consensus 161 ~~i~~~l~~ 169 (385)
+++.+-+..
T Consensus 172 DWL~~~l~~ 180 (182)
T KOG0072|consen 172 DWLQRPLKS 180 (182)
T ss_pred HHHHHHHhc
Confidence 999987643
No 390
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.52 E-value=4e-13 Score=117.20 Aligned_cols=150 Identities=24% Similarity=0.228 Sum_probs=109.2
Q ss_pred chhhhhccCcEEEEEEeCCChhh-hhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH--HHHHHHHhcCCeEEEEcC
Q psy125 74 LRDGYYIQGQCAIIMFDVTSRIT-YKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISA 150 (385)
Q Consensus 74 ~~~~~~~~~d~illV~d~~~~~~-~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa 150 (385)
+.+.-+.+.|-+++|+.+.+|.- ...+++++-... ..++..++|+||+|+.+..... +....+...+++++.+|+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae--~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~ 149 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE--AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSA 149 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH--HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecC
Confidence 33444556777788888877753 333444443332 2577888889999998765544 456678889999999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEE
Q psy125 151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLV 230 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 230 (385)
+++.|++++...+... -.+++
T Consensus 150 ~~~~~~~~l~~~l~~~-----------------------------------------------------------~svl~ 170 (301)
T COG1162 150 KNGDGLEELAELLAGK-----------------------------------------------------------ITVLL 170 (301)
T ss_pred cCcccHHHHHHHhcCC-----------------------------------------------------------eEEEE
Confidence 9999988766543332 37899
Q ss_pred CCCCCCHHHHHHHHhc------CccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125 231 GDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287 (385)
Q Consensus 231 G~~~vgks~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 287 (385)
|.+|||||||+|++.. ++.++.....-+||.+...+.+.+++ .|+||||...+.
T Consensus 171 GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 171 GQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred CCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 9999999999999773 34455555666788889999886555 599999987665
No 391
>KOG3883|consensus
Probab=99.51 E-value=1.3e-13 Score=105.60 Aligned_cols=120 Identities=18% Similarity=0.291 Sum_probs=98.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCcc--ccccccceeeEEEEEEEE-eCCeeEEEEEeeCCCcccc-CcccccccccCc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFH-TNRGAIRFNVWDTAGQEKF-GGLRDGYYIQGQ 298 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-~~~~~~~~~~~~ 298 (385)
...|+++.|..+||||+++.+++-+.. ...+.+|+...+ ...+. -.+..-.+.|+||+|...+ ..+..+|+.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 357999999999999999999885543 345678875444 34343 3445567899999999888 678888999999
Q ss_pred EEEEEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHH
Q psy125 299 CAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 299 ~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
+|+||||..|++||+. .+|++|++...+-|.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 9999999999999998 799999999999999
Q ss_pred HHHHHHHHhcCCCc
Q psy125 330 FLWLARKLIGDPNL 343 (385)
Q Consensus 330 f~~l~~~i~~~~~~ 343 (385)
|..++..+....+.
T Consensus 167 f~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 167 FTYLASRLHQPQSK 180 (198)
T ss_pred HHHHHHhccCCccc
Confidence 99999988665443
No 392
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.51 E-value=3.6e-14 Score=138.71 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=92.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC-------cccccccc------ceeeEEEEEEEEe-----CCeeEEEEEeeCCCcccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTG-------EFEKKYVA------TLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEKF 286 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~ 286 (385)
-+++++|..++|||||+++++.. .+...+.. ..|.+.....+.+ ++..+.+.||||||+..|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 47999999999999999999853 23333333 2366666555444 455688999999999999
Q ss_pred CcccccccccCcEEEEEEeCCChhhhhh---------------------------------------------hheeccc
Q psy125 287 GGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAK 321 (385)
Q Consensus 287 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak 321 (385)
...+..+++.||++|+|||+++..+++. ++++||+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAk 163 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAK 163 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeecc
Confidence 9999999999999999999998655544 4789999
Q ss_pred cCCCchHHHHHHHHHHhc
Q psy125 322 SNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 322 ~~~~v~~~f~~l~~~i~~ 339 (385)
+|.||+++|++|++.+..
T Consensus 164 tG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 164 TGIGIEEILEAIVKRVPP 181 (595)
T ss_pred CCCCHHHHHHHHHHhCCC
Confidence 999999999999998754
No 393
>KOG0071|consensus
Probab=99.51 E-value=8.2e-14 Score=105.13 Aligned_cols=114 Identities=25% Similarity=0.453 Sum_probs=96.6
Q ss_pred cCCCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCc
Q psy125 219 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ 298 (385)
Q Consensus 219 ~~~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 298 (385)
.....+++++++|-.++|||+++..+..++ +....||.|....+... +.+++++||..||++.+.+|.+||.+..
T Consensus 12 ~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtq 86 (180)
T KOG0071|consen 12 IFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQ 86 (180)
T ss_pred HhCcccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCc
Confidence 344567999999999999999999976554 45667887766554443 6778999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhh----------------------------------------------------hheeccccCCCc
Q psy125 299 CAIIMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNF 326 (385)
Q Consensus 299 ~~ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v 326 (385)
|+|||.|..+++..++ ...|||.+|+++
T Consensus 87 glIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL 166 (180)
T KOG0071|consen 87 GLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGL 166 (180)
T ss_pred eEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhH
Confidence 9999999999988777 577999999999
Q ss_pred hHHHHHHHHHH
Q psy125 327 EKPFLWLARKL 337 (385)
Q Consensus 327 ~~~f~~l~~~i 337 (385)
.|.|.||....
T Consensus 167 ~eglswlsnn~ 177 (180)
T KOG0071|consen 167 KEGLSWLSNNL 177 (180)
T ss_pred HHHHHHHHhhc
Confidence 99999998754
No 394
>PRK12736 elongation factor Tu; Reviewed
Probab=99.51 E-value=4.8e-13 Score=125.41 Aligned_cols=158 Identities=15% Similarity=0.054 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFE--------------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~--------------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~ 72 (385)
.+.++|+++|+.++|||||+++|++.... .......|.|.+........+...+.++||||+.++.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 56789999999999999999998753110 0112256778877777776677889999999998776
Q ss_pred cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhhh-----HHHHHHHHhcC----
Q psy125 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKVK-----AKSIVFHRKKN---- 142 (385)
Q Consensus 73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~---- 142 (385)
......+..+|++++|+|++.....+.. ..+..+.. .++| +++++||+|+.+.... .+...+....+
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 166 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGD 166 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcC
Confidence 6555566789999999999875332221 22222222 3677 6788999998643221 12333333332
Q ss_pred -CeEEEEcCCCCC--------ChHHHHHHHHHHH
Q psy125 143 -LQYYDISAKSNY--------NFEKPFLWLARKL 167 (385)
Q Consensus 143 -~~~~~~Sa~~~~--------gi~~l~~~i~~~l 167 (385)
.+++++|+.++. ++..++..+.+.+
T Consensus 167 ~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 167 DIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 478999999973 4555555555543
No 395
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.51 E-value=3.5e-14 Score=116.10 Aligned_cols=109 Identities=19% Similarity=0.140 Sum_probs=79.5
Q ss_pred EEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc--------ccccccccCcE
Q psy125 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYYIQGQC 299 (385)
Q Consensus 228 ~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~~~~ 299 (385)
+++|.+|||||+|+++++.... .......+++...........+..+.+|||||...+.. ....+++++|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD-AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE-EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 4789999999999999886542 12223334444333333333346789999999987654 22346789999
Q ss_pred EEEEEeCCChhhhhh----------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125 300 AIIMFDVTSRITYKN----------------------------------------YYDISAKSNYNFEKPFLWLARKL 337 (385)
Q Consensus 300 ~ilv~d~~~~~s~~~----------------------------------------~~e~Sak~~~~v~~~f~~l~~~i 337 (385)
+++|+|.+++.++.+ ++++||++|.||+++|+++++.+
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 999999987655433 68999999999999999999764
No 396
>KOG0462|consensus
Probab=99.50 E-value=4.7e-13 Score=123.20 Aligned_cols=177 Identities=17% Similarity=0.198 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC--C-----------CcccccceeeeEEEEEEeCCee---EEEEEEeCCCcccccc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEF--E-----------KKYVATLGVEVHPLVFHTNRGA---IRFNVWDTAGQEKFGG 73 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~--~-----------~~~~~~~g~t~~~~~~~~~~~~---~~~~i~Dt~g~~~~~~ 73 (385)
-+++||-+-..|||||..+++.-.- . -......|+|.........+.. +.++++||||+-+|..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 4689999999999999999874211 1 1123567778777665555444 9999999999999998
Q ss_pred chhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHHhcCCeEEEEcC
Q psy125 74 LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISA 150 (385)
Q Consensus 74 ~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa 150 (385)
.....+..++++|+|+|+......+.+..++..+. .++.+|.|+||+|+..... ..+..++......+++.+||
T Consensus 141 EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe---~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSA 217 (650)
T KOG0462|consen 141 EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE---AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSA 217 (650)
T ss_pred eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH---cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEe
Confidence 88889999999999999998766665555555443 5888999999999976443 44555566666678999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
++|.|+++++.+|++. ..+|....|.+.+..+.+...+.
T Consensus 218 K~G~~v~~lL~AII~r--------------VPpP~~~~d~plr~Lifds~yD~ 256 (650)
T KOG0462|consen 218 KTGLNVEELLEAIIRR--------------VPPPKGIRDAPLRMLIFDSEYDE 256 (650)
T ss_pred ccCccHHHHHHHHHhh--------------CCCCCCCCCcchHHHhhhhhhhh
Confidence 9999999999988887 56677777777777776655554
No 397
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.50 E-value=1.2e-12 Score=107.90 Aligned_cols=172 Identities=15% Similarity=0.107 Sum_probs=91.9
Q ss_pred cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 83 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 83 d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
|++++|+|+.++.+..+ ..+...+.-...+.|+++|+||+|+.+......+...+......+...|+... +...+...
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 78 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQS-QKKNLGQK 78 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccc-cccchhhc
Confidence 68999999998755433 12222211112468999999999997666555555555444433333333221 11111000
Q ss_pred HHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHHHH
Q psy125 163 LARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVK 242 (385)
Q Consensus 163 i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~~~ 242 (385)
..+. +..... +... ........+.+.+++.... ......++++++|.+||||||++|
T Consensus 79 ~~~~---~~~~~~-----l~~~---~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~vG~pnvGKSslin 135 (172)
T cd04178 79 SVKV---EAASAD-----LLRS---SVCFGADCLLKLLKNYSRN------------KDIKTSITVGVVGFPNVGKSSLIN 135 (172)
T ss_pred cccc---chhhhh-----hhhh---ccccCHHHHHHHHHHHhhc------------cccccCcEEEEEcCCCCCHHHHHH
Confidence 0000 000000 0000 0000111111222221111 111234789999999999999999
Q ss_pred HHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125 243 RHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283 (385)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 283 (385)
++... -....++.+|+|.....+.++. .+.++||||.
T Consensus 136 ~l~~~-~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 136 SLKRS-RACNVGATPGVTKSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred HHhCc-ccceecCCCCeEcceEEEEeCC---CEEEEECcCC
Confidence 97744 3456677889999888777653 3689999994
No 398
>PRK13796 GTPase YqeH; Provisional
Probab=99.50 E-value=4.5e-13 Score=123.89 Aligned_cols=143 Identities=20% Similarity=0.236 Sum_probs=100.2
Q ss_pred ccCc-EEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHH----HHHHHhcCC---eEEEEcC
Q psy125 80 IQGQ-CAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKS----IVFHRKKNL---QYYDISA 150 (385)
Q Consensus 80 ~~~d-~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~----~~~~~~~~~---~~~~~Sa 150 (385)
...+ .+++|+|+.+... .|...+.+...+.|+++|+||+|+..... .... ..++...+. .++.+||
T Consensus 67 ~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSA 141 (365)
T PRK13796 67 GDSDALVVNVVDIFDFNG-----SWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISA 141 (365)
T ss_pred cccCcEEEEEEECccCCC-----chhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEEC
Confidence 4444 8889999987542 34444444445789999999999964322 1111 222334443 6899999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEE
Q psy125 151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLV 230 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 230 (385)
+++.|+++++..|.+... ..+++++
T Consensus 142 k~g~gI~eL~~~I~~~~~-------------------------------------------------------~~~v~vv 166 (365)
T PRK13796 142 QKGHGIDELLEAIEKYRE-------------------------------------------------------GRDVYVV 166 (365)
T ss_pred CCCCCHHHHHHHHHHhcC-------------------------------------------------------CCeEEEE
Confidence 999999998887765421 1368999
Q ss_pred CCCCCCHHHHHHHHhcCc----cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc
Q psy125 231 GDGGTGKTTFVKRHLTGE----FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285 (385)
Q Consensus 231 G~~~vgks~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 285 (385)
|.+|||||||+|+++... -....++.+|+|.....+.++++. .++||||...
T Consensus 167 G~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~---~l~DTPGi~~ 222 (365)
T PRK13796 167 GVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGS---FLYDTPGIIH 222 (365)
T ss_pred cCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCc---EEEECCCccc
Confidence 999999999999987432 122356778999998888876543 7999999743
No 399
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.50 E-value=5.5e-13 Score=118.00 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-C-------------cc------cccceeeeEEEEEEeCCeeEEEEEEeCCCcc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFE-K-------------KY------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~-~-------------~~------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~ 69 (385)
-.|+|+|+.|+|||||+++|+...-. . .+ ....|.+.........++++.+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 37999999999999999998742110 0 00 0112344445566777888999999999998
Q ss_pred ccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 129 (385)
Q Consensus 70 ~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~ 129 (385)
++.......++.+|++++|+|+++...... ..+..... ..++|+++++||+|+....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~--~~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCR--LRGIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHH--hcCCCEEEEEECCccCCCC
Confidence 877666777899999999999987533221 22222222 2478999999999986543
No 400
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.50 E-value=6.1e-13 Score=124.93 Aligned_cols=146 Identities=14% Similarity=0.054 Sum_probs=99.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCC------C--------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEF------E--------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~------~--------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~ 71 (385)
..+.++|+++|+.++|||||+++|++... . .......|.|.+........+...+.+|||||++++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 46789999999999999999999873200 0 011234677888777777777788999999999887
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEE-EEEeCCCCcchhh-----hHHHHHHHHhcC---
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV-LCGNKVDIKDRKV-----KAKSIVFHRKKN--- 142 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~i-lv~nK~Dl~~~~~-----~~~~~~~~~~~~--- 142 (385)
.......+.++|++++|+|+......+.. ..+..+.. .++|.+ +++||+|+.+... ..+...+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 65555556788999999999874332221 22222222 356655 6899999865322 123334444333
Q ss_pred --CeEEEEcCCCCC
Q psy125 143 --LQYYDISAKSNY 154 (385)
Q Consensus 143 --~~~~~~Sa~~~~ 154 (385)
.+++++|+.++.
T Consensus 166 ~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 166 DDTPIIRGSALKAL 179 (394)
T ss_pred cCccEEECcccccc
Confidence 578999998875
No 401
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.49 E-value=1.2e-13 Score=113.14 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=79.1
Q ss_pred EECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc------cccccc--cCcEE
Q psy125 229 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL------RDGYYI--QGQCA 300 (385)
Q Consensus 229 ~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~~~~~--~~~~~ 300 (385)
++|.+|||||++++++....+.....+....+.....+.+++ ..+.+|||||+..+... ...++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 579999999999999886654333323322333344444553 56899999999887653 455564 99999
Q ss_pred EEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 301 IIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 301 ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|+|+|+++..+... ++++||++|.|+.++|.++.+.
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 79 VNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred EEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 99999998665333 7999999999999999999875
No 402
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.49 E-value=7.7e-14 Score=108.53 Aligned_cols=89 Identities=25% Similarity=0.440 Sum_probs=71.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccc--cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFE--KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
||+++|.+|||||+|+++++...+. ..+.++.+.+.......+......+.+||++|++.+...+...+.++|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988776 23333444455555666677777799999999999888878789999999999
Q ss_pred EeCCChhhhhh
Q psy125 304 FDVTSRITYKN 314 (385)
Q Consensus 304 ~d~~~~~s~~~ 314 (385)
||++++.||+.
T Consensus 81 ~D~s~~~s~~~ 91 (119)
T PF08477_consen 81 YDLSDPESLEY 91 (119)
T ss_dssp EECCGHHHHHH
T ss_pred EcCCChHHHHH
Confidence 99999999976
No 403
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.49 E-value=1.2e-13 Score=130.50 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=87.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc--------cccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR--------DGYY 294 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~ 294 (385)
..+|++++|.+||||||++|+++...+ ..+...+|+++......+...+..+.+|||||+..+.... ..++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 458999999999999999999886542 2233445566554443333334567999999997654332 3578
Q ss_pred ccCcEEEEEEeCCChhhhhh-------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125 295 IQGQCAIIMFDVTSRITYKN-------------------------------------YYDISAKSNYNFEKPFLWLARKL 337 (385)
Q Consensus 295 ~~~~~~ilv~d~~~~~s~~~-------------------------------------~~e~Sak~~~~v~~~f~~l~~~i 337 (385)
+++|++|+|||++++.++++ |+++|||+ .||+++|..|.+.+
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKINSLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred hhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCcchhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 99999999999999887654 47899998 59999999999988
Q ss_pred hcC
Q psy125 338 IGD 340 (385)
Q Consensus 338 ~~~ 340 (385)
.+.
T Consensus 360 ~~~ 362 (442)
T TIGR00450 360 NAF 362 (442)
T ss_pred HHH
Confidence 754
No 404
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.49 E-value=1.7e-13 Score=111.91 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=83.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc--------ccccccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYIQ 296 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~~ 296 (385)
++++++|++|+|||++++++....+. ......+++..............+.+|||||...+... ...++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRA-IVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceE-eccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 58999999999999999998865432 22233344433332222223557899999998765432 1235679
Q ss_pred CcEEEEEEeCCChhhhhh-----------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125 297 GQCAIIMFDVTSRITYKN-----------------------------------YYDISAKSNYNFEKPFLWLARKL 337 (385)
Q Consensus 297 ~~~~ilv~d~~~~~s~~~-----------------------------------~~e~Sak~~~~v~~~f~~l~~~i 337 (385)
+|++++|+|++++.+..+ ++++||+++.|+++++.+|...+
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 999999999998877766 89999999999999999998754
No 405
>CHL00071 tufA elongation factor Tu
Probab=99.49 E-value=8e-13 Score=124.56 Aligned_cols=146 Identities=15% Similarity=0.050 Sum_probs=100.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCC--------------CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEF--------------EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~--------------~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~ 72 (385)
.+.++|+++|+.++|||||+++|++..- ........|.|++........+...+.++||||+..+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 5679999999999999999999886411 01112236778877766676777889999999988776
Q ss_pred cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhhh-----HHHHHHHHhcC----
Q psy125 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKVK-----AKSIVFHRKKN---- 142 (385)
Q Consensus 73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~---- 142 (385)
......+..+|++++|+|+......+.. ..+..+.. .++| +++++||+|+.+.... .++..+....+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~-~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~ 166 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPMPQTK-EHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGD 166 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6666677899999999999865332221 22222221 4677 6789999998753321 23333333322
Q ss_pred -CeEEEEcCCCCCC
Q psy125 143 -LQYYDISAKSNYN 155 (385)
Q Consensus 143 -~~~~~~Sa~~~~g 155 (385)
.+++++|+.++.+
T Consensus 167 ~~~ii~~Sa~~g~n 180 (409)
T CHL00071 167 DIPIVSGSALLALE 180 (409)
T ss_pred cceEEEcchhhccc
Confidence 5789999988764
No 406
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.49 E-value=1.1e-13 Score=117.78 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=86.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc----------ccCccccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE----------KFGGLRDG 292 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 292 (385)
...+++++|.+|+||||++++++.+.+...+.+++|.+........ ...+.||||||.. ++..+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 5689999999999999999999987777788888887776555443 2568999999953 33344455
Q ss_pred ccccC---cEEEEEEeCCChhhhhh----------------------------------------------hheeccccC
Q psy125 293 YYIQG---QCAIIMFDVTSRITYKN----------------------------------------------YYDISAKSN 323 (385)
Q Consensus 293 ~~~~~---~~~ilv~d~~~~~s~~~----------------------------------------------~~e~Sak~~ 323 (385)
|++.+ +++++|+|.+++.+..+ ++++||++|
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~ 179 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKK 179 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCC
Confidence 66544 67888999887554432 788999999
Q ss_pred CCchHHHHHHHHHH
Q psy125 324 YNFEKPFLWLARKL 337 (385)
Q Consensus 324 ~~v~~~f~~l~~~i 337 (385)
.|++++|..|.+.+
T Consensus 180 ~gi~~l~~~i~~~~ 193 (196)
T PRK00454 180 QGIDELRAAIAKWL 193 (196)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999988765
No 407
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.48 E-value=8.3e-13 Score=119.09 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=44.9
Q ss_pred CCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH-HHHHHHhcCCCccc
Q psy125 113 NIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL-WLARKLIGDPNLEF 175 (385)
Q Consensus 113 ~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~-~i~~~l~~~~~~~~ 175 (385)
.+|+++++||.|+........... .......++.+||+.+.++.++.. .+...+...|.+.+
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~~~~l~-~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~ 276 (318)
T cd01899 214 SKPMVIAANKADIPDAENNISKLR-LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEI 276 (318)
T ss_pred CCcEEEEEEHHHccChHHHHHHHH-hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCcee
Confidence 479999999999754332222111 222355899999999999999997 69999887766655
No 408
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.48 E-value=5.2e-13 Score=118.22 Aligned_cols=114 Identities=20% Similarity=0.170 Sum_probs=84.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--C--C------------cccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEF--E--K------------KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL 74 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~--~--~------------~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~ 74 (385)
.|+++|++|+|||||+++|+...- . . ......|+|.........+++..++++||||..++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 489999999999999999874211 0 0 01134577777777777788899999999999877777
Q ss_pred hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125 75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 127 (385)
Q Consensus 75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~ 127 (385)
+...+..+|++++|+|+.+....+. ...+..+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 7888999999999999987543222 122222222 4789999999999864
No 409
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.48 E-value=1e-12 Score=113.14 Aligned_cols=113 Identities=20% Similarity=0.273 Sum_probs=79.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------------cccceeeeEEEEEEe-----CCeeEEEEEEeCCCc
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKY-----------------VATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQ 68 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~-----------------~~~~g~t~~~~~~~~-----~~~~~~~~i~Dt~g~ 68 (385)
+|+++|+.|+|||||+++|+........ ....|.+........ +...+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999998875432210 112333332222221 345688999999999
Q ss_pred cccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125 69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 126 (385)
Q Consensus 69 ~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~ 126 (385)
.++......++..+|++++|+|+.+...... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence 9887777788899999999999987655432 233333322 468999999999974
No 410
>PRK04213 GTP-binding protein; Provisional
Probab=99.48 E-value=6.2e-14 Score=119.73 Aligned_cols=112 Identities=24% Similarity=0.234 Sum_probs=81.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCC-----------ccccCcccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG-----------QEKFGGLRD 291 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G-----------~~~~~~~~~ 291 (385)
...+|+++|.+||||||+++++.+..+...+ .+|+++....+... .+.+||||| +++++..+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~--~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGK--RPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 3579999999999999999999877765433 34667665555433 478999999 566766666
Q ss_pred cccc----cCcEEEEEEeCCChhhh--------------------hh------------------------------h--
Q psy125 292 GYYI----QGQCAIIMFDVTSRITY--------------------KN------------------------------Y-- 315 (385)
Q Consensus 292 ~~~~----~~~~~ilv~d~~~~~s~--------------------~~------------------------------~-- 315 (385)
.|++ .++++++|+|.++...+ .. .
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 6664 34677788887542110 00 2
Q ss_pred ---------heeccccCCCchHHHHHHHHHHhcCC
Q psy125 316 ---------YDISAKSNYNFEKPFLWLARKLIGDP 341 (385)
Q Consensus 316 ---------~e~Sak~~~~v~~~f~~l~~~i~~~~ 341 (385)
++|||++| ||+++|.+|++.+....
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 68999999 99999999999876544
No 411
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.47 E-value=3.1e-13 Score=104.61 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=72.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc---------chhhhhcc
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---------LRDGYYIQ 81 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~---------~~~~~~~~ 81 (385)
||+|+|.+|+|||||+|+|++.. ........+.|+.............+.++||||...... .....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK-LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST-SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccc-cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 79999999999999999977633 444555567777665444333556667999999753211 12233478
Q ss_pred CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeC
Q psy125 82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNK 122 (385)
Q Consensus 82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK 122 (385)
+|++++|+|+.++.. ......+..+. .+.|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 999999999877322 11223334442 68999999998
No 412
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.46 E-value=1.5e-13 Score=126.13 Aligned_cols=110 Identities=16% Similarity=0.101 Sum_probs=79.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccc--cccceeeEEEEEEEEeCCeeEEEEEeeCCCccc---------cCcccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK---------FGGLRD 291 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~ 291 (385)
...+|+++|.+|||||||+|++....+... ...|. +.....+.+.+ +..+.+|||||+.+ |....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl- 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL- 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-
Confidence 348999999999999999999886654211 12222 22233444432 34689999999832 22211
Q ss_pred cccccCcEEEEEEeCCChhhhhh------------------------------------------hheeccccCCCchHH
Q psy125 292 GYYIQGQCAIIMFDVTSRITYKN------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 292 ~~~~~~~~~ilv~d~~~~~s~~~------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
.++.++|++|+|||++++.++++ +++|||++|.|++++
T Consensus 264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL 343 (351)
T TIGR03156 264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLL 343 (351)
T ss_pred HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHH
Confidence 24789999999999999877643 378999999999999
Q ss_pred HHHHHHH
Q psy125 330 FLWLARK 336 (385)
Q Consensus 330 f~~l~~~ 336 (385)
+.+|.+.
T Consensus 344 ~~~I~~~ 350 (351)
T TIGR03156 344 LEAIAER 350 (351)
T ss_pred HHHHHhh
Confidence 9998764
No 413
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.46 E-value=1.3e-13 Score=116.37 Aligned_cols=113 Identities=21% Similarity=0.160 Sum_probs=86.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccc--------------eeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVAT--------------LGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD 291 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 291 (385)
+|+++|.+|+|||++++.++...+...+..+ .+.+..............+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999998876555433221 12233322333333456789999999998888888
Q ss_pred cccccCcEEEEEEeCCChhhhhh---------------------------------------------------------
Q psy125 292 GYYIQGQCAIIMFDVTSRITYKN--------------------------------------------------------- 314 (385)
Q Consensus 292 ~~~~~~~~~ilv~d~~~~~s~~~--------------------------------------------------------- 314 (385)
.+++.+|++++|+|++++.+.+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCC
Confidence 89999999999999987654432
Q ss_pred ---hheeccccCCCchHHHHHHHHHHh
Q psy125 315 ---YYDISAKSNYNFEKPFLWLARKLI 338 (385)
Q Consensus 315 ---~~e~Sak~~~~v~~~f~~l~~~i~ 338 (385)
++++||+.|.|++++|.+|.+.+.
T Consensus 161 ~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 161 LVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cceEEEEecccCcCHHHHHHHHHhhCC
Confidence 478999999999999999999863
No 414
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.46 E-value=9.2e-14 Score=114.02 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=48.5
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
....+|+++++.+|+|++.-+|++.+ +|||++++||.....+.+.+++.+.+
T Consensus 134 P~qLSGGQqQRVAIARALaM~P~vmL-----FDEPTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 134 PAQLSGGQQQRVAIARALAMDPKVML-----FDEPTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred ccccCcHHHHHHHHHHHHcCCCCEEe-----ecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 34566999999999999999999999 99999999999999999999999887
No 415
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.45 E-value=5.8e-12 Score=117.13 Aligned_cols=178 Identities=19% Similarity=0.205 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC------------------------CeeEEEEEEeC
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN------------------------RGAIRFNVWDT 65 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~------------------------~~~~~~~i~Dt 65 (385)
++|+|||.+|||||||+|+|.+... .....++.|+++...... ...+.+.++|+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~--~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV--EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc--cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 6999999999999999999766543 223445555544442211 22467899999
Q ss_pred CCccc----cccchhhh---hccCcEEEEEEeCCC---------------hh-hhh----cHHHH---------------
Q psy125 66 AGQEK----FGGLRDGY---YIQGQCAIIMFDVTS---------------RI-TYK----NVPNW--------------- 103 (385)
Q Consensus 66 ~g~~~----~~~~~~~~---~~~~d~illV~d~~~---------------~~-~~~----~~~~~--------------- 103 (385)
||... ...+...+ ++++|++++|+|+.. +. .++ ++..|
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~ 159 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK 159 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99642 22233344 789999999999962 10 000 00000
Q ss_pred -------------------------HHHHHH-----------------------hcCCCCEEEEEeCCCCcchhhhHHHH
Q psy125 104 -------------------------HRDLVR-----------------------VCENIPIVLCGNKVDIKDRKVKAKSI 135 (385)
Q Consensus 104 -------------------------~~~l~~-----------------------~~~~~~~ilv~nK~Dl~~~~~~~~~~ 135 (385)
+..++. ....+|+++|+||.|....... ..
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~--l~ 237 (396)
T PRK09602 160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN--IE 237 (396)
T ss_pred HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH--HH
Confidence 000000 0124899999999997532211 12
Q ss_pred HHHHhcCCeEEEEcCCCCCChHH-HHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHH
Q psy125 136 VFHRKKNLQYYDISAKSNYNFEK-PFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLK 201 (385)
Q Consensus 136 ~~~~~~~~~~~~~Sa~~~~gi~~-l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~ 201 (385)
.+.......++.+||+.+.++.+ ++..+.+.+...| +++++....|...+ +.+.++
T Consensus 238 ~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p--------~~~~~d~ltd~~~r--~~E~IR 294 (396)
T PRK09602 238 RLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDS--------DFEILGELSEKQKK--ALEYIR 294 (396)
T ss_pred HHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC--------ccCccccCCHHHHH--HHHHHH
Confidence 22223556799999999999998 7888888876653 34444444454443 666666
No 416
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=1.3e-12 Score=118.61 Aligned_cols=170 Identities=20% Similarity=0.187 Sum_probs=121.8
Q ss_pred CCCc-cccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhc-C
Q psy125 65 TAGQ-EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-N 142 (385)
Q Consensus 65 t~g~-~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~-~ 142 (385)
.+|+ .++.......+...|+++-|+|+.++.+..+. .+..+. .+.+.++|+||+|+.+.....++....... +
T Consensus 17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~--~l~~~v---~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~ 91 (322)
T COG1161 17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP--ELERIV---KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG 91 (322)
T ss_pred CCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc--cHHHHH---ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC
Confidence 3554 34555667788899999999999999876542 222222 466669999999999887777666665555 5
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCC
Q psy125 143 LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDM 222 (385)
Q Consensus 143 ~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 222 (385)
...+.++++.+.++..+...+..... +.+..... .....
T Consensus 92 ~~~~~v~~~~~~~~~~i~~~~~~~~~-----------------------------~~i~~~~~------------~~~~~ 130 (322)
T COG1161 92 IKPIFVSAKSRQGGKKIRKALEKLSE-----------------------------EKIKRLKK------------KGLLK 130 (322)
T ss_pred CccEEEEeecccCccchHHHHHHHHH-----------------------------HHHHHHhh------------cCCCc
Confidence 67788888888888776654444321 01111111 12223
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 284 (385)
...+++++|-+||||||+||++. +.....+++.+|+|...+.+.++.+ +.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~-~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLL-GKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHh-cccceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 45789999999999999999966 4555788889999999999998876 6899999963
No 417
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.45 E-value=7.6e-13 Score=121.04 Aligned_cols=118 Identities=16% Similarity=0.196 Sum_probs=98.4
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc--------c
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG--------Y 293 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--------~ 293 (385)
+..+|++++|.||||||||+|.++ ++-...++..+|||++.....++-.++.+.|+||||.++-...... .
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~-~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALL-GRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHh-cCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 356899999999999999999966 5667888899999999999988888899999999999865544433 5
Q ss_pred cccCcEEEEEEeCCChhhhhh--------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 294 YIQGQCAIIMFDVTSRITYKN--------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 294 ~~~~~~~ilv~d~~~~~s~~~--------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
+..||.+++|+|.+.+.+-++ ++.+||++|.|++.+-+.|.+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~ 373 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQ 373 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHH
Confidence 789999999999998522222 588999999999999988888
Q ss_pred HHhcC
Q psy125 336 KLIGD 340 (385)
Q Consensus 336 ~i~~~ 340 (385)
.+...
T Consensus 374 ~~~~~ 378 (454)
T COG0486 374 LFGKG 378 (454)
T ss_pred HHhhc
Confidence 77554
No 418
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.45 E-value=1e-13 Score=113.23 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=72.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc----cccccCcEEE
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD----GYYIQGQCAI 301 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----~~~~~~~~~i 301 (385)
+|+++|.+|||||+|++++. +.+.. ...+.++ ..... .+|||||+......+. ..++++|++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~-~~~~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ-GNYTL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc-CCCcc-CccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999954 44421 1222222 22222 2699999842221111 2368999999
Q ss_pred EEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125 302 IMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWLARKLI 338 (385)
Q Consensus 302 lv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~ 338 (385)
+|||+++..++.. +++|||++|.||+++|..+++.+.
T Consensus 70 ~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 70 YVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred EEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 9999998876544 789999999999999999988663
No 419
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.45 E-value=1.3e-12 Score=123.00 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-------------------------------cccccceeeeEEEEEEeCCeeE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEK-------------------------------KYVATLGVEVHPLVFHTNRGAI 58 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~-------------------------------~~~~~~g~t~~~~~~~~~~~~~ 58 (385)
+||+++|+.++|||||+++|+...-.- ......|.|.+.......+.+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999986432100 0112345667777777777788
Q ss_pred EEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh------hH
Q psy125 59 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV------KA 132 (385)
Q Consensus 59 ~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~------~~ 132 (385)
.+.++||||++++.......+..+|++++|+|+......+....+. +.......++++++||+|+..... ..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~ 158 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLGIRHVVLAVNKMDLVDYDEEVFENIKK 158 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence 9999999999887665566778999999999998764433222222 222223446889999999864221 11
Q ss_pred HHHHHHHhcC---CeEEEEcCCCCCChHH
Q psy125 133 KSIVFHRKKN---LQYYDISAKSNYNFEK 158 (385)
Q Consensus 133 ~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 158 (385)
+...+....+ .+++++||.++.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2222222222 3699999999999875
No 420
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.45 E-value=1.1e-12 Score=125.24 Aligned_cols=151 Identities=16% Similarity=0.163 Sum_probs=100.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc-------------------------------ccccceeeeEEEEEEeCC
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-------------------------------YVATLGVEVHPLVFHTNR 55 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~-------------------------------~~~~~g~t~~~~~~~~~~ 55 (385)
.+.++|+++|+.++|||||+++|+...-.-. .....|+|.+.......+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 5679999999999999999999875421100 011234566666666667
Q ss_pred eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hH-
Q psy125 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KA- 132 (385)
Q Consensus 56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~- 132 (385)
+...+.++||||++.+.......+..+|++++|+|+......+....+ .+.......++++++||+|+..... ..
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~ 182 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLGIKHLVVAVNKMDLVDYSEEVFER 182 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhCCCceEEEEEeeccccchhHHHHH
Confidence 778899999999887765555556899999999999875433222222 1222223457889999999863211 11
Q ss_pred ---HHHHHHHh----cCCeEEEEcCCCCCChHHH
Q psy125 133 ---KSIVFHRK----KNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 133 ---~~~~~~~~----~~~~~~~~Sa~~~~gi~~l 159 (385)
+...+... ...+++++|++++.|+.++
T Consensus 183 i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 12222222 2367999999999998754
No 421
>KOG4423|consensus
Probab=99.45 E-value=1.1e-14 Score=115.28 Aligned_cols=163 Identities=33% Similarity=0.550 Sum_probs=135.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
-+++.++|.-|+|||+++.+++...+...+..++|+.+.......+.. -+++.+||..|++++..+..-|++.+++.++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 479999999999999999999999888889999998887777666554 4678999999999999999999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcchhh---hHHHHHHHHhcCC-eEEEEcCCCCCChHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNL-QYYDISAKSNYNFEK 158 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 158 (385)
|||+++...|+....|.+.+.... .-.|+++..||||...... .....++.+..+. .++++|++.+.++.+
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 999999999999999999876521 2356788899999865433 2344455565555 799999999999999
Q ss_pred HHHHHHHHHhcCC
Q psy125 159 PFLWLARKLIGDP 171 (385)
Q Consensus 159 l~~~i~~~l~~~~ 171 (385)
....++..+.-+.
T Consensus 185 a~r~lVe~~lvnd 197 (229)
T KOG4423|consen 185 AQRELVEKILVND 197 (229)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888776553
No 422
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=2e-13 Score=113.60 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=53.2
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhc
Q psy125 143 LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETA 207 (385)
Q Consensus 143 ~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~ 207 (385)
......-|.+.+|+++++..|++++.++|++++ .|||.+.+||...+.+++.+++...+.
T Consensus 138 ~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiIL-----ADEPvasLDp~~a~~Vm~~l~~in~~~ 197 (258)
T COG3638 138 LDKAYQRASTLSGGQQQRVAIARALVQQPKIIL-----ADEPVASLDPESAKKVMDILKDINQED 197 (258)
T ss_pred HHHHHHHhccCCcchhHHHHHHHHHhcCCCEEe-----cCCcccccChhhHHHHHHHHHHHHHHc
Confidence 344445567788999999999999999999999 999999999999999999999987763
No 423
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.44 E-value=1.4e-12 Score=116.40 Aligned_cols=146 Identities=17% Similarity=0.195 Sum_probs=92.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC----ccc------------ccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEK----KYV------------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL 74 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~----~~~------------~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~ 74 (385)
+|+|+|++|+|||||+++++...... .+. ...+.+.........+.+..+.+|||||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 48999999999999999987532110 000 01123333334445556788999999999877666
Q ss_pred hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEE--EcCCC
Q psy125 75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD--ISAKS 152 (385)
Q Consensus 75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~Sa~~ 152 (385)
....+..+|++++|+|+++.........| ..+.. .++|.++++||+|+...........+....+.+++. +...+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~--~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE--AGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH--cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence 77888999999999999886544322222 22222 478999999999987543322233333333444443 44566
Q ss_pred CCChHHH
Q psy125 153 NYNFEKP 159 (385)
Q Consensus 153 ~~gi~~l 159 (385)
+.++..+
T Consensus 158 ~~~~~~~ 164 (268)
T cd04170 158 GDDFKGV 164 (268)
T ss_pred CCceeEE
Confidence 6555433
No 424
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.43 E-value=4e-13 Score=108.72 Aligned_cols=106 Identities=39% Similarity=0.714 Sum_probs=90.0
Q ss_pred EECCCCCCHHHHHHHHhcCcc-ccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCC
Q psy125 229 LVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 307 (385)
Q Consensus 229 ~~G~~~vgks~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~ 307 (385)
++|.+|+|||++++++..... .....++. .+..............+.+||++|+..+......+++.++++++|||++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 579999999999999887666 45555665 6666666666667888999999999988888888999999999999999
Q ss_pred Chhhhhh--------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 308 SRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 308 ~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
++.+++. ++++||+.+.|++++|.+|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 9987664 799999999999999999863
No 425
>KOG0077|consensus
Probab=99.43 E-value=3.9e-13 Score=104.69 Aligned_cols=151 Identities=20% Similarity=0.292 Sum_probs=110.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.-|++++|--|+|||||+++ +.+.....+.||.-.|..... .++++++-.|.+|+...+..+..|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHM-LKdDrl~qhvPTlHPTSE~l~----Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHM-LKDDRLGQHVPTLHPTSEELS----IGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHH-HccccccccCCCcCCChHHhe----ecCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 446899999999999999999 666666666666655544433 378999999999998888889999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHH---HHHHhcC--------------CeEEEE
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN--------------LQYYDI 148 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~---~~~~~~~--------------~~~~~~ 148 (385)
.+|+-+.+.+.+....++.+... ..+.|+++.+||+|.......++.. .+....+ ..++.+
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 99999999998776666665552 3689999999999987644333222 1111111 146777
Q ss_pred cCCCCCChHHHHHHH
Q psy125 149 SAKSNYNFEKPFLWL 163 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i 163 (385)
|...+.|..+-+.++
T Consensus 174 si~~~~gy~e~fkwl 188 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWL 188 (193)
T ss_pred EEEccCccceeeeeh
Confidence 877766654444443
No 426
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.43 E-value=2.7e-13 Score=113.51 Aligned_cols=90 Identities=16% Similarity=0.213 Sum_probs=67.8
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc----------ccCcccc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE----------KFGGLRD 291 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 291 (385)
....+++++|.+|+||||+++++....+...+.+++|+|.....+..++ .+.+|||||.. .+..+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 3568999999999999999999987766677778888877666555543 47899999953 2333334
Q ss_pred cccc---cCcEEEEEEeCCChhhhhh
Q psy125 292 GYYI---QGQCAIIMFDVTSRITYKN 314 (385)
Q Consensus 292 ~~~~---~~~~~ilv~d~~~~~s~~~ 314 (385)
.|++ .++++++|+|++++.+..+
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~ 118 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELD 118 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHH
Confidence 4555 4579999999998666555
No 427
>KOG1191|consensus
Probab=99.43 E-value=6.6e-13 Score=121.12 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=94.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc-cCccccc--------c
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDG--------Y 293 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~--------~ 293 (385)
..++++++|+||||||+|+|.+. ++-...++|.+|+|++.....++-.++++.+.||||..+ -...... .
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~-~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALS-REDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHh-cCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 34899999999999999999955 566788999999999999998888889999999999876 2222111 4
Q ss_pred cccCcEEEEEEeCCC--hhhhhh---------------------------------------------------------
Q psy125 294 YIQGQCAIIMFDVTS--RITYKN--------------------------------------------------------- 314 (385)
Q Consensus 294 ~~~~~~~ilv~d~~~--~~s~~~--------------------------------------------------------- 314 (385)
+..+|++++|+|... -.+-..
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP 425 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence 679999999999932 222111
Q ss_pred -hheeccccCCCchHHHHHHHHHHhcCCC
Q psy125 315 -YYDISAKSNYNFEKPFLWLARKLIGDPN 342 (385)
Q Consensus 315 -~~e~Sak~~~~v~~~f~~l~~~i~~~~~ 342 (385)
..++|++++++++++-.++...+.....
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 4559999999999999999888766544
No 428
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.43 E-value=2.4e-13 Score=114.90 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=48.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhc
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETA 207 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~ 207 (385)
....+|+++++..|++++...|++++ +|||+.++|...+..+.+.+.+...+.
T Consensus 128 P~qLSGGMrQRVaiARAL~~~P~lLL-----lDEPFgALDalTR~~lq~~l~~lw~~~ 180 (248)
T COG1116 128 PHQLSGGMRQRVAIARALATRPKLLL-----LDEPFGALDALTREELQDELLRLWEET 180 (248)
T ss_pred ccccChHHHHHHHHHHHHhcCCCEEE-----EcCCcchhhHHHHHHHHHHHHHHHHhh
Confidence 44556999999999999999999999 999999999999999999999887763
No 429
>PRK00049 elongation factor Tu; Reviewed
Probab=99.43 E-value=4.8e-12 Score=118.67 Aligned_cols=146 Identities=14% Similarity=0.057 Sum_probs=98.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFE--------------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~--------------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~ 71 (385)
..+.++|+++|+.++|||||+++|+..... .......|.|.+........+...+.++||||+.++
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 357799999999999999999998763110 011225677888777777677788999999999876
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEE-EEEeCCCCcchhh-----hHHHHHHHHhc----
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV-LCGNKVDIKDRKV-----KAKSIVFHRKK---- 141 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~i-lv~nK~Dl~~~~~-----~~~~~~~~~~~---- 141 (385)
.......+..+|++++|+|+......+. ...+..+.. .+.|.+ +++||+|+..... ..++..+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 6655666789999999999987533222 122222222 467875 6899999864322 11222333322
Q ss_pred -CCeEEEEcCCCCC
Q psy125 142 -NLQYYDISAKSNY 154 (385)
Q Consensus 142 -~~~~~~~Sa~~~~ 154 (385)
..+++++|+.++.
T Consensus 166 ~~~~iv~iSa~~g~ 179 (396)
T PRK00049 166 DDTPIIRGSALKAL 179 (396)
T ss_pred cCCcEEEeeccccc
Confidence 3578999998864
No 430
>COG2262 HflX GTPases [General function prediction only]
Probab=99.43 E-value=4.3e-12 Score=114.06 Aligned_cols=157 Identities=18% Similarity=0.133 Sum_probs=102.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCcccccc--chh------hhh
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGG--LRD------GYY 79 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~--~~~------~~~ 79 (385)
-+.|+|+|-+|+|||||+|++.+... ........|.++........ +..+.+-||.|.-..-. +.. .-.
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~--~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADV--YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCe--eccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 46899999999999999999664321 11222333333333332222 56778889999643211 111 223
Q ss_pred ccCcEEEEEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125 80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (385)
..+|.++.|+|++++...+.+.....-+... ....|+++|.||+|+....... . .........+.+||+++.|++.
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~--~-~~~~~~~~~v~iSA~~~~gl~~ 346 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEIL--A-ELERGSPNPVFISAKTGEGLDL 346 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhh--h-hhhhcCCCeEEEEeccCcCHHH
Confidence 6899999999999996655554444444432 3568999999999976544311 1 1111222689999999999999
Q ss_pred HHHHHHHHHhcC
Q psy125 159 PFLWLARKLIGD 170 (385)
Q Consensus 159 l~~~i~~~l~~~ 170 (385)
++..|...+...
T Consensus 347 L~~~i~~~l~~~ 358 (411)
T COG2262 347 LRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHhhhc
Confidence 999999988643
No 431
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.42 E-value=9.5e-13 Score=128.13 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=87.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
+..+++++|..++|||||++++....+.....+.+..+.....+..++. ..+.+|||||++.|..++..++..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 3468999999999999999999877765554433323333334444332 268999999999999999989999999999
Q ss_pred EEeCCC---hhhhhh-----------------------------------------------hheeccccCCCchHHHHH
Q psy125 303 MFDVTS---RITYKN-----------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 303 v~d~~~---~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|||+++ +++++. |+++||++|.||+++|.+
T Consensus 165 VVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~ 244 (587)
T TIGR00487 165 VVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDM 244 (587)
T ss_pred EEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHh
Confidence 999987 344433 578999999999999999
Q ss_pred HHH
Q psy125 333 LAR 335 (385)
Q Consensus 333 l~~ 335 (385)
|+.
T Consensus 245 I~~ 247 (587)
T TIGR00487 245 ILL 247 (587)
T ss_pred hhh
Confidence 875
No 432
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.42 E-value=4.5e-13 Score=121.94 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=83.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC-eeEEEEEeeCCCcccc----Cccccc---cccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKF----GGLRDG---YYIQ 296 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~----~~~~~~---~~~~ 296 (385)
..|.++|.+|||||||++++.... ......+++|.......+.. ....+.+|||||+.+- ..+... ++..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 469999999999999999976533 12333344555444433322 3456899999997432 223333 4568
Q ss_pred CcEEEEEEeCCChhhhhh--------------------------------------------------hheeccccCCCc
Q psy125 297 GQCAIIMFDVTSRITYKN--------------------------------------------------YYDISAKSNYNF 326 (385)
Q Consensus 297 ~~~~ilv~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v 326 (385)
++++|+|||+++..+|++ +++|||+++.||
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 999999999998776655 688999999999
Q ss_pred hHHHHHHHHHHhcCC
Q psy125 327 EKPFLWLARKLIGDP 341 (385)
Q Consensus 327 ~~~f~~l~~~i~~~~ 341 (385)
+++|.+|.+.+.+.+
T Consensus 317 ~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 317 DELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999876543
No 433
>PLN03126 Elongation factor Tu; Provisional
Probab=99.42 E-value=3.6e-12 Score=121.29 Aligned_cols=147 Identities=14% Similarity=0.042 Sum_probs=101.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCC------CC--------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGE------FE--------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~------~~--------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~ 71 (385)
..+.++|+++|+.++|||||+++|+... .. .......|.|.+.........+..+.++|+||+.++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4567999999999999999999988521 11 112344677777766666667788999999999887
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhh-----hHHHHHHHHhc----
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV-----KAKSIVFHRKK---- 141 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~-----~~~~~~~~~~~---- 141 (385)
.......+..+|++++|+|+.+....+.. .++..+. . .++| +++++||+|+.+... ..++..+....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~-e~~~~~~-~-~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~ 234 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAK-Q-VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG 234 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHH-H-cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 76666677899999999999876433322 2222222 2 4667 778999999865322 11333333332
Q ss_pred -CCeEEEEcCCCCCC
Q psy125 142 -NLQYYDISAKSNYN 155 (385)
Q Consensus 142 -~~~~~~~Sa~~~~g 155 (385)
..+++++|+.++.+
T Consensus 235 ~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 235 DDIPIISGSALLALE 249 (478)
T ss_pred CcceEEEEEcccccc
Confidence 45788999987754
No 434
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.42 E-value=3.6e-13 Score=114.04 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=77.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC----cccccc-----ccceeeEEEEEEEE----------eCCeeEEEEEeeCCCccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTG----EFEKKY-----VATLGVEVHPLVFH----------TNRGAIRFNVWDTAGQEK 285 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~l~i~Dt~G~~~ 285 (385)
++|+++|..++|||+++++++.. .+...+ ..|.+.++....+. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999998852 111111 12333333333332 123367899999999865
Q ss_pred cCcccccccccCcEEEEEEeCCChhhhhh---------------------------------------------------
Q psy125 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN--------------------------------------------------- 314 (385)
Q Consensus 286 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--------------------------------------------------- 314 (385)
+....-.....+|++++|+|+++..+.+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKN 160 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 42222223456789999999987433221
Q ss_pred --hheeccccCCCchHHHHHHHHHHh
Q psy125 315 --YYDISAKSNYNFEKPFLWLARKLI 338 (385)
Q Consensus 315 --~~e~Sak~~~~v~~~f~~l~~~i~ 338 (385)
++++||++|.|+++++.+|..+|.
T Consensus 161 ~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 161 SPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CCEEEEeccCCCCHHHHHHHHHhccc
Confidence 467999999999999999999885
No 435
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.42 E-value=1.8e-12 Score=128.91 Aligned_cols=150 Identities=21% Similarity=0.178 Sum_probs=99.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc-------------------------------ccccceeeeEEEEEEeCC
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-------------------------------YVATLGVEVHPLVFHTNR 55 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~-------------------------------~~~~~g~t~~~~~~~~~~ 55 (385)
...++|+++|++++|||||+++|+...-.-. .....|+|++........
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 4578999999999999999999886321100 011245566666666677
Q ss_pred eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc--hhhh--
Q psy125 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD--RKVK-- 131 (385)
Q Consensus 56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~--~~~~-- 131 (385)
....+.++||||+.++.......+..+|++++|+|+......+....+. +.......++++++||+|+.+ ....
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~--~~~~~~~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF--IASLLGIRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH--HHHHhCCCeEEEEEEecccccchhHHHHH
Confidence 7788999999999876555555678999999999998754333222221 222223467889999999863 2111
Q ss_pred --HHHHHHHHhcC---CeEEEEcCCCCCChHH
Q psy125 132 --AKSIVFHRKKN---LQYYDISAKSNYNFEK 158 (385)
Q Consensus 132 --~~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 158 (385)
.+...+....+ .+++++||+++.|+.+
T Consensus 180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 12222223323 3689999999999874
No 436
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.41 E-value=1.5e-13 Score=118.28 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=94.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc-cccchhhhhccCcEE---E
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQCA---I 86 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~-~~~~~~~~~~~~d~i---l 86 (385)
-++|+||||||||||++++.+ ...+..|.+.+...|...... .......+++|.... +
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g------------------~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG------------------LLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc------------------cCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 468999999999999999877 566666777776655443321 112233444443211 2
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
.|+|+.. ....++...+....+.|. .... ..+.......+........+|++.++.+|+++
T Consensus 92 tV~d~V~--------------~GR~p~~~~~~~~~~~D~---~~v~--~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 92 TVYELVL--------------LGRYPHLGLFGRPSKEDE---EIVE--EALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred EEeehHh--------------hcCCcccccccCCCHhHH---HHHH--HHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 2333211 111122222211122221 1111 11222222233333445566999999999999
Q ss_pred HhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 167 LIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 167 l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
+.+++++++ +|||++.+|...+..+.+.+++...+
T Consensus 153 LaQ~~~iLL-----LDEPTs~LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 153 LAQETPILL-----LDEPTSHLDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred HhcCCCEEE-----eCCCccccCHHHHHHHHHHHHHHHHh
Confidence 999999999 99999999999999999999998755
No 437
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.41 E-value=1.2e-12 Score=112.37 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--Cc------------ccccceeeeEEEE--EEeC--------CeeEEEEEEeCC
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFE--KK------------YVATLGVEVHPLV--FHTN--------RGAIRFNVWDTA 66 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~--~~------------~~~~~g~t~~~~~--~~~~--------~~~~~~~i~Dt~ 66 (385)
.|+++|+.++|||||+.+|+...-. .. .....|.|..... .... ...+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999998754211 00 0011222322221 1112 337889999999
Q ss_pred CccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 126 (385)
Q Consensus 67 g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~ 126 (385)
|+.++......++..+|++++|+|+.+....+.. ..+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH--cCCCEEEEEECCCcc
Confidence 9999888888899999999999999987655432 22222222 468999999999975
No 438
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.41 E-value=4.2e-12 Score=120.31 Aligned_cols=152 Identities=17% Similarity=0.214 Sum_probs=105.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCC--C---------------------------CcccccceeeeEEEEEEeCC
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYVATLGVEVHPLVFHTNR 55 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~--~---------------------------~~~~~~~g~t~~~~~~~~~~ 55 (385)
...+.++|+++|+.++|||||+-+|+...- . .......|+|.+.......+
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 356789999999999999999988764210 0 01123456677777777778
Q ss_pred eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhh------cHHHHHHHHHHhcCCC-CEEEEEeCCCCcch
Q psy125 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK------NVPNWHRDLVRVCENI-PIVLCGNKVDIKDR 128 (385)
Q Consensus 56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~------~~~~~~~~l~~~~~~~-~~ilv~nK~Dl~~~ 128 (385)
....++++||||+.+|.......+..+|++|+|+|+++.. ++ ........+... .++ ++++++||+|+...
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~-~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT-LGVKQMICCCNKMDATTP 160 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH-cCCCcEEEEEEcccCCch
Confidence 8899999999999999888888889999999999998731 21 111111112222 355 57889999997521
Q ss_pred --------hhhHHHHHHHHhcC-----CeEEEEcCCCCCChHH
Q psy125 129 --------KVKAKSIVFHRKKN-----LQYYDISAKSNYNFEK 158 (385)
Q Consensus 129 --------~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 158 (385)
+...++..+....+ .+++++|+.+|.|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11334444555444 5789999999999753
No 439
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.41 E-value=7.4e-12 Score=107.27 Aligned_cols=158 Identities=18% Similarity=0.260 Sum_probs=101.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEe-CCeeEEEEEEeCCCccccc-----cchhhhhccCcE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFG-----GLRDGYYIQGQC 84 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~-~~~~~~~~i~Dt~g~~~~~-----~~~~~~~~~~d~ 84 (385)
||+|+|+.|+||||..+. +-.++.+......|.|.+.....+ ..+.+.+.+||+||+..+. ......++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~v-IF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSV-IFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHH-HHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHH-HHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999887 445555555566777776665555 3567899999999986433 245678899999
Q ss_pred EEEEEeCCChhhhhc---HHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH--------HHHHHHHhcC---CeEEEEcC
Q psy125 85 AIIMFDVTSRITYKN---VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--------KSIVFHRKKN---LQYYDISA 150 (385)
Q Consensus 85 illV~d~~~~~~~~~---~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~--------~~~~~~~~~~---~~~~~~Sa 150 (385)
+|+|+|+.+..-.+. ....+..+.+..++..+.++++|.|+....... .+.+.....+ ..++.+|.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 999999985432222 334455556667899999999999986533322 2222333334 67888888
Q ss_pred CCCCChHHHHHHHHHHHhcC
Q psy125 151 KSNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~~ 170 (385)
.+. .+-+.+..++..+..+
T Consensus 160 ~D~-Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 160 WDE-SLYEAWSKIVQKLIPN 178 (232)
T ss_dssp TST-HHHHHHHHHHHTTSTT
T ss_pred cCc-HHHHHHHHHHHHHccc
Confidence 874 6777788887776544
No 440
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.41 E-value=6.4e-12 Score=111.77 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=83.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCc----------ccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc-----
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKK----------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----- 73 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~----------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----- 73 (385)
.++|+++|.+|+|||||+|+|++...... ..++.+..........++..+.+++|||||......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999888765433 223333333333444455668899999999533211
Q ss_pred ---------------------chhhhhc--cCcEEEEEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125 74 ---------------------LRDGYYI--QGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 129 (385)
Q Consensus 74 ---------------------~~~~~~~--~~d~illV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~ 129 (385)
.+...+. ++|+++++++.+.. ..... ...+..+. ...|+++|+||+|+....
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHH
Confidence 0101222 36677777776542 22222 12233332 478999999999985532
Q ss_pred h----hHHHHHHHHhcCCeEEEEcC
Q psy125 130 V----KAKSIVFHRKKNLQYYDISA 150 (385)
Q Consensus 130 ~----~~~~~~~~~~~~~~~~~~Sa 150 (385)
. .....+.....++.++.+..
T Consensus 160 e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 160 ELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred HHHHHHHHHHHHHHHcCCceECCCC
Confidence 2 23344455566666666543
No 441
>PLN03127 Elongation factor Tu; Provisional
Probab=99.40 E-value=1.2e-11 Score=117.03 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=84.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcC------CCC--------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTG------EFE--------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~------~~~--------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~ 71 (385)
..+.++|+++|+.++|||||+++|.+. ... .......|+|++........+..++.++||||+.++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 356799999999999999999997521 100 011234778888887777777889999999999876
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcc
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKD 127 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~ 127 (385)
.......+..+|++++|+|+.+....+. ...+..+.. .++| +++++||+|+.+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~--~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ--VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEeeccCC
Confidence 6555555678999999999987543222 122222222 4677 578899999874
No 442
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.39 E-value=1.3e-12 Score=111.36 Aligned_cols=88 Identities=16% Similarity=0.291 Sum_probs=68.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccC-cEEEEEE
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQG-QCAIIMF 304 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~-~~~ilv~ 304 (385)
+++++|+++||||+|++++..+.+...+.++. ...........+..+.+.||||||+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999888877665542 222222222223456789999999999988888899999 9999999
Q ss_pred eCCCh-hhhhh
Q psy125 305 DVTSR-ITYKN 314 (385)
Q Consensus 305 d~~~~-~s~~~ 314 (385)
|+++. .++.+
T Consensus 81 D~~~~~~~~~~ 91 (203)
T cd04105 81 DSATFQKNLKD 91 (203)
T ss_pred ECccchhHHHH
Confidence 99998 55544
No 443
>COG1159 Era GTPase [General function prediction only]
Probab=99.39 E-value=1.5e-12 Score=112.49 Aligned_cols=125 Identities=14% Similarity=0.020 Sum_probs=99.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc--------cc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG--------YY 294 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--------~~ 294 (385)
.+..++++|.||||||||+|+++ +.-...+++.+++|+.....-......++.++||||..+-...... .+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~-G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALV-GQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHh-cCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 45789999999999999999976 4455777888889998887766666778999999998665433332 46
Q ss_pred ccCcEEEEEEeCCChhhhhh---------------------------------------------hheeccccCCCchHH
Q psy125 295 IQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 295 ~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
.++|+++||.|+++.-.-.+ .+.+||+.|.|++.+
T Consensus 84 ~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L 163 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTL 163 (298)
T ss_pred ccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHH
Confidence 79999999999998333222 789999999999999
Q ss_pred HHHHHHHHhcCCCcccccC
Q psy125 330 FLWLARKLIGDPNLEFVAM 348 (385)
Q Consensus 330 f~~l~~~i~~~~~~~~~~~ 348 (385)
...+...+.+.+.+.....
T Consensus 164 ~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 164 LEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred HHHHHHhCCCCCCcCChhh
Confidence 9999999988776654443
No 444
>PRK00089 era GTPase Era; Reviewed
Probab=99.39 E-value=2.3e-12 Score=116.55 Aligned_cols=117 Identities=16% Similarity=0.083 Sum_probs=84.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc--------cccccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYY 294 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~ 294 (385)
....|+++|.+|||||||+|++++..+ ...++.++++..............+.+|||||...... ....++
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~-~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCce-eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 456799999999999999999876544 33444555555544333333446789999999755332 222357
Q ss_pred ccCcEEEEEEeCCChhhhhh---------------------------------------------hheeccccCCCchHH
Q psy125 295 IQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 295 ~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
.++|++++|+|+++..+-.. ++++||++|.|++++
T Consensus 83 ~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L 162 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDEL 162 (292)
T ss_pred hcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHH
Confidence 79999999999998322111 678999999999999
Q ss_pred HHHHHHHHhcC
Q psy125 330 FLWLARKLIGD 340 (385)
Q Consensus 330 f~~l~~~i~~~ 340 (385)
+.+|.+.+...
T Consensus 163 ~~~L~~~l~~~ 173 (292)
T PRK00089 163 LDVIAKYLPEG 173 (292)
T ss_pred HHHHHHhCCCC
Confidence 99999987544
No 445
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.39 E-value=1.6e-12 Score=108.07 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=77.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc-----------cc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR-----------DG 292 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----------~~ 292 (385)
.++|+++|.+|+|||+++++++...+... ....+++.......+...+..+.+|||||........ ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 37899999999999999999886543211 1222333333222222223457899999976442111 12
Q ss_pred ccccCcEEEEEEeCCChhhhhh-------------------------------------------------hheeccccC
Q psy125 293 YYIQGQCAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 293 ~~~~~~~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~ 323 (385)
+++++|++++|+|++++.++.. ++++||+++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTG 160 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCC
Confidence 4679999999999999877654 788999999
Q ss_pred CCchHHHHHHHH
Q psy125 324 YNFEKPFLWLAR 335 (385)
Q Consensus 324 ~~v~~~f~~l~~ 335 (385)
.|++++|.++.+
T Consensus 161 ~~i~~~~~~l~~ 172 (174)
T cd01895 161 QGVDKLFDAIDE 172 (174)
T ss_pred CCHHHHHHHHHH
Confidence 999999988876
No 446
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.39 E-value=1.4e-12 Score=104.40 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=77.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc------cc--ccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD------GY--YIQ 296 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~--~~~ 296 (385)
++|+++|.||||||++.|++.+.. ......+|+|...+...+......+.++|+||......... .| ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 479999999999999999977555 44566777877766655543446789999999765544332 13 369
Q ss_pred CcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHH
Q psy125 297 GQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 297 ~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
.|++|.|.|.++.+.-.. ++.+||+++.|++++++.|
T Consensus 79 ~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 999999999998544322 8999999999999998865
No 447
>PRK13351 elongation factor G; Reviewed
Probab=99.37 E-value=7.8e-12 Score=125.78 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=85.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCC----Cc------c------cccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFE----KK------Y------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~----~~------~------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~ 71 (385)
...+|+|+|+.|+|||||+++|+...-. .. . ....+.|.........+....+++|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 4569999999999999999998753210 00 0 012444555555566667899999999999888
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 127 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~ 127 (385)
......+++.+|++++|+|+++....+....|. .+.. .++|+++++||+|+..
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~--~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR--YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh--cCCCEEEEEECCCCCC
Confidence 777888899999999999998876554433332 2222 4789999999999864
No 448
>PRK11058 GTPase HflX; Provisional
Probab=99.37 E-value=1.1e-12 Score=123.27 Aligned_cols=113 Identities=19% Similarity=0.128 Sum_probs=80.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEE--EEEEeCCeeEEEEEeeCCCcccc--Ccccc------ccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP--LVFHTNRGAIRFNVWDTAGQEKF--GGLRD------GYY 294 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~------~~~ 294 (385)
.+++++|.+||||||++|++....+.. ...+++|... ..+.+.+. ..+.+|||||..+. ..++. .++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v--~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYA--ADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceee--ccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence 589999999999999999988655431 1222233322 23334332 25689999998442 11222 246
Q ss_pred ccCcEEEEEEeCCChhhhhh--------------------------------------------hheeccccCCCchHHH
Q psy125 295 IQGQCAIIMFDVTSRITYKN--------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 295 ~~~~~~ilv~d~~~~~s~~~--------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
+.+|++|+|+|++++.++++ ++++||++|.||+++|
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~ 354 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLF 354 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHH
Confidence 89999999999999876654 1679999999999999
Q ss_pred HHHHHHHhcC
Q psy125 331 LWLARKLIGD 340 (385)
Q Consensus 331 ~~l~~~i~~~ 340 (385)
.+|.+.+...
T Consensus 355 e~I~~~l~~~ 364 (426)
T PRK11058 355 QALTERLSGE 364 (426)
T ss_pred HHHHHHhhhc
Confidence 9999988543
No 449
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.37 E-value=2.4e-12 Score=105.40 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=69.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhh---hhccCcEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG---YYIQGQCA 85 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~---~~~~~d~i 85 (385)
.-.|+|+|++|+|||+|+.+|..+.....+.+... .... .........+.++|+||+.+.+..... +...+.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~-n~~~--~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN-NIAY--NVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSE-EEEC--CGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC-CceE--EeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 35799999999999999999888865554444311 1100 001234567899999999987764444 47889999
Q ss_pred EEEEeCCCh-hhhhcHHHH-HHHHHH---hcCCCCEEEEEeCCCCcchhh
Q psy125 86 IIMFDVTSR-ITYKNVPNW-HRDLVR---VCENIPIVLCGNKVDIKDRKV 130 (385)
Q Consensus 86 llV~d~~~~-~~~~~~~~~-~~~l~~---~~~~~~~ilv~nK~Dl~~~~~ 130 (385)
|||+|.... .....+.++ +.-+.. .....|++++.||.|+.....
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 999998753 233333333 222222 225678999999999876443
No 450
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.37 E-value=1.4e-11 Score=116.90 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=102.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCC--CC---------------------------CcccccceeeeEEEEEEeCCe
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGE--FE---------------------------KKYVATLGVEVHPLVFHTNRG 56 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~--~~---------------------------~~~~~~~g~t~~~~~~~~~~~ 56 (385)
..+.++|+++|+.++|||||+.+|+... .. .......|.|.+.......++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 4577999999999999999999987521 00 011134567777777777888
Q ss_pred eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhh---h---hcHHHHHHHHHHhcCCCC-EEEEEeCCCCcc--
Q psy125 57 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRIT---Y---KNVPNWHRDLVRVCENIP-IVLCGNKVDIKD-- 127 (385)
Q Consensus 57 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~---~---~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~-- 127 (385)
...++++||||+.+|.......+..+|++++|+|+..... + ....+.+ .+... .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~-~gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFT-LGVKQMIVCINKMDDKTVN 161 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHH-cCCCeEEEEEEccccccch
Confidence 8999999999999887777777889999999999987531 1 1111211 12222 3555 678999999432
Q ss_pred ---h---hhhHHHHHHHHhc-----CCeEEEEcCCCCCChHH
Q psy125 128 ---R---KVKAKSIVFHRKK-----NLQYYDISAKSNYNFEK 158 (385)
Q Consensus 128 ---~---~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~ 158 (385)
. ....++..+.... ..+++++|+.+|.|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 1122333333322 25789999999999854
No 451
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.37 E-value=1.8e-12 Score=109.40 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=47.4
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
...+|+++++.+|+|++..+|++++ +|||+..+|......+.+.+++...+
T Consensus 141 ~eLSGGqqQRVAIARAL~~~P~iil-----ADEPTgnLD~~t~~~V~~ll~~~~~~ 191 (226)
T COG1136 141 SELSGGQQQRVAIARALINNPKIIL-----ADEPTGNLDSKTAKEVLELLRELNKE 191 (226)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCeEE-----eeCccccCChHHHHHHHHHHHHHHHh
Confidence 3455999999999999999999999 99999999999999999999998766
No 452
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.37 E-value=3.7e-12 Score=109.27 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc-----------hhhh
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL-----------RDGY 78 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~-----------~~~~ 78 (385)
+||+|+|.+|+||||++|.|++...+.......++|..+........+..+.++||||..+.... ....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 58999999999999999999998877666555566666666655666788999999996432211 1123
Q ss_pred hccCcEEEEEEeCCChhhh-hcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---------hHHHHHHHHhcCCeEEEE
Q psy125 79 YIQGQCAIIMFDVTSRITY-KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---------KAKSIVFHRKKNLQYYDI 148 (385)
Q Consensus 79 ~~~~d~illV~d~~~~~~~-~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~ 148 (385)
.++.|++|+|+.+...... .....++..+.....-..++++++..|...... ...+.++...++.+++.+
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f 160 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVF 160 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEEC
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEE
Confidence 4679999999999833211 112233444433212245777777776443221 123456777788888888
Q ss_pred cCC------CCCChHHHHHHHHHHHhcC
Q psy125 149 SAK------SNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 149 Sa~------~~~gi~~l~~~i~~~l~~~ 170 (385)
+.+ ....+.+++..|...+..+
T Consensus 161 ~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 161 NNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 766 2345666777777766655
No 453
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.36 E-value=1e-11 Score=124.67 Aligned_cols=118 Identities=18% Similarity=0.110 Sum_probs=87.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCC----Ccc------------cccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFE----KKY------------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~----~~~------------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~ 71 (385)
+..+|+|+|+.|+|||||+++|+...-. ..+ ....|+|.+.......+++..+++|||||+.++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 3458999999999999999998742111 001 114577777777777788899999999999887
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcch
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~ 128 (385)
.......+..+|++++|+|+.+....+... ++..+.. .++|+++++||+|+...
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~--~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR--YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH--cCCCEEEEEECCCCCCC
Confidence 777788889999999999998865444322 2222222 47899999999998753
No 454
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.35 E-value=4.2e-12 Score=126.59 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=86.5
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
.+...|+++|..++|||||++++..+.+.....+.+..+.....+..+ +..++||||||++.|..++..+++.+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 356789999999999999999988766554332222122222233333 456899999999999999998999999999
Q ss_pred EEEeCCC---hhhhhh-----------------------------------------------hheeccccCCCchHHHH
Q psy125 302 IMFDVTS---RITYKN-----------------------------------------------YYDISAKSNYNFEKPFL 331 (385)
Q Consensus 302 lv~d~~~---~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~ 331 (385)
||||+++ +.+++. |+++||++|.||+++|.
T Consensus 366 LVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle 445 (787)
T PRK05306 366 LVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLE 445 (787)
T ss_pred EEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHH
Confidence 9999987 444333 68899999999999999
Q ss_pred HHHH
Q psy125 332 WLAR 335 (385)
Q Consensus 332 ~l~~ 335 (385)
+|..
T Consensus 446 ~I~~ 449 (787)
T PRK05306 446 AILL 449 (787)
T ss_pred hhhh
Confidence 9986
No 455
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.35 E-value=1.6e-12 Score=108.45 Aligned_cols=106 Identities=18% Similarity=0.136 Sum_probs=72.2
Q ss_pred EECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCe-eEEEEEeeCCCccc----cCcccc---cccccCcEE
Q psy125 229 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEK----FGGLRD---GYYIQGQCA 300 (385)
Q Consensus 229 ~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~----~~~~~~---~~~~~~~~~ 300 (385)
++|.+|||||||++++....+ ......+++.......+... ...+.+|||||+.. ...+.. .++++++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 579999999999999887654 11122222322221112222 55689999999732 222322 247789999
Q ss_pred EEEEeCCCh------hhhh----------------------h---------------------------------hheec
Q psy125 301 IIMFDVTSR------ITYK----------------------N---------------------------------YYDIS 319 (385)
Q Consensus 301 ilv~d~~~~------~s~~----------------------~---------------------------------~~e~S 319 (385)
++|+|++++ .+++ . ++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 3332 1 78999
Q ss_pred cccCCCchHHHHHHHHH
Q psy125 320 AKSNYNFEKPFLWLARK 336 (385)
Q Consensus 320 ak~~~~v~~~f~~l~~~ 336 (385)
|+++.|++++|+++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
No 456
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.35 E-value=2.1e-11 Score=106.00 Aligned_cols=153 Identities=17% Similarity=0.088 Sum_probs=105.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc-------cchhhhhcc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-------GLRDGYYIQ 81 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~-------~~~~~~~~~ 81 (385)
.-+++|||.|++|||||+|.|.+ . ...+...+.+|..++.......+..++++|+||.-... .......++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTn-t-~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTN-T-KSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhC-C-CccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 35899999999999999999554 2 23334556667777777777888999999999864322 234556789
Q ss_pred CcEEEEEEeCCChhh-hhcHHHHHH-------------------------------------------------------
Q psy125 82 GQCAIIMFDVTSRIT-YKNVPNWHR------------------------------------------------------- 105 (385)
Q Consensus 82 ~d~illV~d~~~~~~-~~~~~~~~~------------------------------------------------------- 105 (385)
||.+++|+|+..... .+.+...+.
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986433 111111110
Q ss_pred -----------HHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 106 -----------DLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 106 -----------~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
.+......+|.+.|.||+|+...+.... +.+. ...+.+|++.+.|++++...|-+.+-
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~---l~~~--~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELER---LARK--PNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHH---HHhc--cceEEEecccCCCHHHHHHHHHHhhC
Confidence 0001112468899999999877433322 2222 27899999999999999999988763
No 457
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.35 E-value=5.7e-12 Score=103.86 Aligned_cols=112 Identities=14% Similarity=0.066 Sum_probs=80.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc--------cccccc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYI 295 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~ 295 (385)
..+|+++|.+|+||||++++++...+.. .....+++............+.+.+|||||....... ...++.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISI-VSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEe-ccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 4789999999999999999988654322 2222223333333333444567899999997654332 233578
Q ss_pred cCcEEEEEEeCCChhhhhh---------------------------------------------hheeccccCCCchHHH
Q psy125 296 QGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 296 ~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
.+|++++|+|++++.+... ++++||+++.|++++|
T Consensus 82 ~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 161 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELL 161 (168)
T ss_pred hCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHH
Confidence 9999999999998722222 7889999999999999
Q ss_pred HHHHHH
Q psy125 331 LWLARK 336 (385)
Q Consensus 331 ~~l~~~ 336 (385)
.+|.+.
T Consensus 162 ~~l~~~ 167 (168)
T cd04163 162 EEIVKY 167 (168)
T ss_pred HHHHhh
Confidence 998765
No 458
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1.8e-11 Score=107.31 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=102.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCcccccc----chh---hhhccC
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGG----LRD---GYYIQG 82 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~----~~~---~~~~~~ 82 (385)
-|+|||-||||||||++.+.. ..+.+..++.+|..+....+. ...-.|.+-|.||.....+ +-. ..+.++
T Consensus 161 DVGLVG~PNaGKSTlls~vS~--AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSA--AKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhh--cCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 468999999999999998544 334445556666666554443 3456689999999754332 222 234678
Q ss_pred cEEEEEEeCCChhh---hhc---HHHHHHHHHHhcCCCCEEEEEeCCCCcch-hhhHHH-HHHHHhcCCeEE-EEcCCCC
Q psy125 83 QCAIIMFDVTSRIT---YKN---VPNWHRDLVRVCENIPIVLCGNKVDIKDR-KVKAKS-IVFHRKKNLQYY-DISAKSN 153 (385)
Q Consensus 83 d~illV~d~~~~~~---~~~---~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~~-~~Sa~~~ 153 (385)
.++++|+|++.... .++ +...+..+.....++|.++|+||+|+... +..... ..+........+ .+|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 89999999986543 222 22333333334568999999999995433 322222 233333343322 2999999
Q ss_pred CChHHHHHHHHHHHhcC
Q psy125 154 YNFEKPFLWLARKLIGD 170 (385)
Q Consensus 154 ~gi~~l~~~i~~~l~~~ 170 (385)
.|++++...+.+.+...
T Consensus 319 ~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 319 EGLDELLRALAELLEET 335 (369)
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999988887654
No 459
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.33 E-value=1.3e-11 Score=119.11 Aligned_cols=119 Identities=19% Similarity=0.238 Sum_probs=83.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc--CCCC--Cc----------------ccccceeeeEEEEEEeCCeeEEEEEEeCCC
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLT--GEFE--KK----------------YVATLGVEVHPLVFHTNRGAIRFNVWDTAG 67 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~--~~~~--~~----------------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g 67 (385)
+..+|+|+|+.|+|||||+++|+. +... .. .....|.+.........++++.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 345999999999999999999863 1100 00 011234455555566677789999999999
Q ss_pred ccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125 68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 129 (385)
Q Consensus 68 ~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~ 129 (385)
+.++.......+..+|++|+|+|+.+..... ...++.... ..++|+++++||+|+....
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~--~~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCR--LRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHH--hcCCCEEEEEECCcccccC
Confidence 9888776777889999999999998753222 122332222 2589999999999986543
No 460
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.33 E-value=3e-12 Score=126.51 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=88.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCcccccccccee--eEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 300 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 300 (385)
+...|+++|..++|||||++++....+.....+++. ...+...+..++....+.+|||||++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 457899999999999999999887665443222221 112222333334567899999999999999999999999999
Q ss_pred EEEEeCCCh---hhhhh-----------------------------------------------hheeccccCCCchHHH
Q psy125 301 IIMFDVTSR---ITYKN-----------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 301 ilv~d~~~~---~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||+|+++. .+++. |+++||++|.||+++|
T Consensus 323 ILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLl 402 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLL 402 (742)
T ss_pred EEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHH
Confidence 999999884 44333 4789999999999999
Q ss_pred HHHHHH
Q psy125 331 LWLARK 336 (385)
Q Consensus 331 ~~l~~~ 336 (385)
.+|+..
T Consensus 403 e~I~~l 408 (742)
T CHL00189 403 ETILLL 408 (742)
T ss_pred Hhhhhh
Confidence 999875
No 461
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.32 E-value=4.1e-12 Score=115.64 Aligned_cols=110 Identities=18% Similarity=0.207 Sum_probs=76.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEE--EEeCCeeEEEEEeeCCCcccc----Cccccccc---c
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--FHTNRGAIRFNVWDTAGQEKF----GGLRDGYY---I 295 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~Dt~G~~~~----~~~~~~~~---~ 295 (385)
..|+++|.+|||||||++++..... .....+++|..... +.++ ....+.||||||+.+. ..+...++ .
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 5799999999999999999875432 11222223332222 2222 2356899999998532 23444444 4
Q ss_pred cCcEEEEEEeCCCh---hhhhh-------------------------------------------------hheeccccC
Q psy125 296 QGQCAIIMFDVTSR---ITYKN-------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 296 ~~~~~ilv~d~~~~---~s~~~-------------------------------------------------~~e~Sak~~ 323 (385)
.++++|+|+|+++. .++++ ++++||+++
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 79999999999986 34433 688999999
Q ss_pred CCchHHHHHHHHHH
Q psy125 324 YNFEKPFLWLARKL 337 (385)
Q Consensus 324 ~~v~~~f~~l~~~i 337 (385)
.||+++|.+|++.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 462
>PRK12739 elongation factor G; Reviewed
Probab=99.32 E-value=2.3e-11 Score=122.04 Aligned_cols=117 Identities=19% Similarity=0.133 Sum_probs=85.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCC----CCccc------------ccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEF----EKKYV------------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~----~~~~~------------~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~ 71 (385)
+..+|+|+|+.++|||||+++|+...- ...+. ...|+|.+.......+++..++++||||+.++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 346899999999999999999874211 11111 25567777777777778899999999999877
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 127 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~ 127 (385)
.......+..+|++++|+|+.+....+.. ..+..+.. .++|.++++||+|+..
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECCCCCC
Confidence 66677788999999999999876433322 22222222 4789999999999864
No 463
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=2.1e-11 Score=103.84 Aligned_cols=161 Identities=14% Similarity=0.210 Sum_probs=104.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeE-EEEEEeCCeeEEEEEEeCCCccc-------cccchhhh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLVFHTNRGAIRFNVWDTAGQEK-------FGGLRDGY 78 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~-~~~~~~~~~~~~~~i~Dt~g~~~-------~~~~~~~~ 78 (385)
..+++|.|+|.+|+|||||+|+++.+...+.. ..|.+.+ ........+.-.+.+||+||..+ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVS--KVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceee--ecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 46789999999999999999998854433221 1121111 11122233447789999999865 33445677
Q ss_pred hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh---------hhHHHHH--------H--HH
Q psy125 79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK---------VKAKSIV--------F--HR 139 (385)
Q Consensus 79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~---------~~~~~~~--------~--~~ 139 (385)
++..|.++++.+..++.--.... ++..+....-+.++++++|.+|....- ......+ . ..
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDED-FLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hhhccEEEEeccCCCccccCCHH-HHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 88999999999999886444333 333443333458999999999964320 0111111 1 11
Q ss_pred hcCCeEEEEcCCCCCChHHHHHHHHHHHhcC
Q psy125 140 KKNLQYYDISAKSNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 140 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~ 170 (385)
..-.+++..+.....|++.+...++.++...
T Consensus 194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 194 QEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred hhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 1234778888899999999999999998644
No 464
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.31 E-value=4.2e-12 Score=124.44 Aligned_cols=115 Identities=14% Similarity=0.185 Sum_probs=88.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC--cc-----cccc------ccceeeEEEEEEEEe-----CCeeEEEEEeeCCCcccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTG--EF-----EKKY------VATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEKF 286 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~--~~-----~~~~------~~~~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~ 286 (385)
-+++++|..++|||||+.+++.. .+ ...+ ..+.|.+.....+.+ ++..+.++||||||+..|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 47999999999999999998842 11 1111 123345554443333 455788999999999999
Q ss_pred CcccccccccCcEEEEEEeCCChhhhhh---------------------------------------------hheeccc
Q psy125 287 GGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAK 321 (385)
Q Consensus 287 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak 321 (385)
...+..+++.||++|+|+|+++....+. ++++||+
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAk 167 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAK 167 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecC
Confidence 9888999999999999999998644333 3789999
Q ss_pred cCCCchHHHHHHHHHHhc
Q psy125 322 SNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 322 ~~~~v~~~f~~l~~~i~~ 339 (385)
+|.||+++|++|++.+..
T Consensus 168 tG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 168 TGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CCCCHHHHHHHHHHhCcc
Confidence 999999999999998754
No 465
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.9e-11 Score=108.73 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=109.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCC--C---------------------------CCcccccceeeeEEEEEEeCCee
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGE--F---------------------------EKKYVATLGVEVHPLVFHTNRGA 57 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~--~---------------------------~~~~~~~~g~t~~~~~~~~~~~~ 57 (385)
.+.++++++|+..+|||||+-+|+-.. . ........|+|.+..........
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 477999999999999999998876531 0 01123456788888888888888
Q ss_pred EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh---h--hhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--
Q psy125 58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI---T--YKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-- 130 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~---~--~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-- 130 (385)
..++++|+||+.++..-+..-..++|++|||+|+++.+ + ..........+.+...-..+|+++||.|+.+-..
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 89999999999888877778889999999999999873 1 1222333444444445556889999999874211
Q ss_pred ----hHHHHHHHHhcC-----CeEEEEcCCCCCChHH
Q psy125 131 ----KAKSIVFHRKKN-----LQYYDISAKSNYNFEK 158 (385)
Q Consensus 131 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 158 (385)
..+...+.+..+ .+++++|+..|.|+.+
T Consensus 165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 222333444444 3699999999999864
No 466
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=2.9e-11 Score=109.84 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=115.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-------Cc------ccccceeeeEEEEE----Ee-CCeeEEEEEEeCCCcccc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFE-------KK------YVATLGVEVHPLVF----HT-NRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~-------~~------~~~~~g~t~~~~~~----~~-~~~~~~~~i~Dt~g~~~~ 71 (385)
-+..++-+-..|||||..||+...-. .. .....|+|...... .. ++..+.++++||||+-+|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 36788999999999999998753211 11 12345666554332 22 446799999999999988
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEEEE
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYYDI 148 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~ 148 (385)
.-.....+..|.++|+|+|++.....+.+.+.+..+. .+..++-|+||+||+.........+.....+. ..+.+
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle---~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~ 166 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV 166 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH---cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeE
Confidence 8778888899999999999998877666666666654 57889999999999875543333333333443 67899
Q ss_pred cCCCCCChHHHHHHHHHHH
Q psy125 149 SAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l 167 (385)
||++|.|+++++..|+..+
T Consensus 167 SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 167 SAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred ecccCCCHHHHHHHHHhhC
Confidence 9999999999999998885
No 467
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.31 E-value=1.3e-11 Score=107.35 Aligned_cols=84 Identities=14% Similarity=0.059 Sum_probs=55.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc----c---cccccccCc
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----L---RDGYYIQGQ 298 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~~~ 298 (385)
+++++|.+|+|||+|++++.+.... .....+++.......+...+..+++|||||+..... + ...+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~--v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE--VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc--ccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 6899999999999999998754321 111222332222222222356789999999854431 1 123689999
Q ss_pred EEEEEEeCCChhh
Q psy125 299 CAIIMFDVTSRIT 311 (385)
Q Consensus 299 ~~ilv~d~~~~~s 311 (385)
++++|+|++++..
T Consensus 80 ~il~V~D~t~~~~ 92 (233)
T cd01896 80 LILMVLDATKPEG 92 (233)
T ss_pred EEEEEecCCcchh
Confidence 9999999998763
No 468
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.31 E-value=2.4e-11 Score=117.23 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=83.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC-CCCC---c----------------ccccceeeeEEEEEEeCCeeEEEEEEeCCC
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTG-EFEK---K----------------YVATLGVEVHPLVFHTNRGAIRFNVWDTAG 67 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~-~~~~---~----------------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g 67 (385)
+..+|+|+|+.|+|||||+++|+.. .... . .....|.+.........++++.+++|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 4569999999999999999997631 1110 0 012335566666677778889999999999
Q ss_pred ccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125 68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 127 (385)
Q Consensus 68 ~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~ 127 (385)
+.++.......+..+|++|+|+|+.+..... ...++.... ..++|+++++||+|+..
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~--~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTR--LRDTPIFTFMNKLDRDI 146 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHH--hcCCCEEEEEECccccC
Confidence 9877776677789999999999998752211 122332222 25789999999999854
No 469
>KOG0072|consensus
Probab=99.31 E-value=1.2e-12 Score=99.29 Aligned_cols=113 Identities=26% Similarity=0.424 Sum_probs=93.7
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
...+++++|..|+||++++-+.-.++. ....|++|...... ..+..++++||..|+-..+..|..||.+.+++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v----~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETV----PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccc----ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 468999999999999999888544433 44567777554433 3477888999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|.|.+|+..... ++++||-.|.|+++++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 999999876443 8999999999999999
Q ss_pred HHHHHHHhcC
Q psy125 331 LWLARKLIGD 340 (385)
Q Consensus 331 ~~l~~~i~~~ 340 (385)
+||++.+..+
T Consensus 172 DWL~~~l~~~ 181 (182)
T KOG0072|consen 172 DWLQRPLKSR 181 (182)
T ss_pred HHHHHHHhcc
Confidence 9999987543
No 470
>PRK09866 hypothetical protein; Provisional
Probab=99.31 E-value=1.3e-10 Score=110.69 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=69.6
Q ss_pred EEEEEEeCCCccccc-c----chhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--
Q psy125 58 IRFNVWDTAGQEKFG-G----LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-- 130 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~-~----~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-- 130 (385)
..+.++||||..... . .....+..+|++++|+|+....+..+ ......+.....+.|+++|+||+|+.++..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 346889999986421 1 23456789999999999987544332 122333333212359999999999864221
Q ss_pred hHHHHHHH----Hhc---CCeEEEEcCCCCCChHHHHHHHHHH
Q psy125 131 KAKSIVFH----RKK---NLQYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 131 ~~~~~~~~----~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
......+. ... ...++++||+.+.|++.++..|...
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 22222221 111 3379999999999999998887764
No 471
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.31 E-value=9.9e-12 Score=92.26 Aligned_cols=134 Identities=18% Similarity=0.156 Sum_probs=89.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEE---EEEeCCCccccccch----hhhhccCc
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF---NVWDTAGQEKFGGLR----DGYYIQGQ 83 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~---~i~Dt~g~~~~~~~~----~~~~~~~d 83 (385)
|+++||..|+|||||++.+-+.... +..+ ..+.+ -.+||||.--....+ ......++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKT--------------QAve~~d~~~IDTPGEy~~~~~~Y~aL~tt~~dad 66 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKT--------------QAVEFNDKGDIDTPGEYFEHPRWYHALITTLQDAD 66 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hccc--------------ceeeccCccccCCchhhhhhhHHHHHHHHHhhccc
Confidence 8999999999999999996553211 1111 11222 147999953222222 23346899
Q ss_pred EEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHH
Q psy125 84 CAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 84 ~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~ 162 (385)
++++|-.++++++.-. ..+... ..+|+|-+++|.|+...........|...-+. ++|.+|+.++.|+++++..
T Consensus 67 vi~~v~~and~~s~f~-----p~f~~~-~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 67 VIIYVHAANDPESRFP-----PGFLDI-GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeeeeecccCccccCC-----cccccc-cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 9999999998865321 111111 35669999999999865544444555555444 8999999999999999988
Q ss_pred HHHH
Q psy125 163 LARK 166 (385)
Q Consensus 163 i~~~ 166 (385)
|+..
T Consensus 141 L~~~ 144 (148)
T COG4917 141 LASL 144 (148)
T ss_pred HHhh
Confidence 7653
No 472
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.30 E-value=1.1e-11 Score=121.45 Aligned_cols=112 Identities=19% Similarity=0.130 Sum_probs=88.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc---CccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 226 KCVLVGDGGTGKTTFVKRHLT---GEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
.|+++|..++|||||++++.+ +.+.+.+.+++..+.....+..++ ..+.+|||||+++|......++.++|++++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 589999999999999999874 344444444444444444444444 678999999999998777778899999999
Q ss_pred EEeCCC---hhhhhh------------------------------------------------hheeccccCCCchHHHH
Q psy125 303 MFDVTS---RITYKN------------------------------------------------YYDISAKSNYNFEKPFL 331 (385)
Q Consensus 303 v~d~~~---~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~ 331 (385)
|+|+++ +++++. ++++||++|.||++++.
T Consensus 80 VVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~ 159 (581)
T TIGR00475 80 VVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKK 159 (581)
T ss_pred EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHH
Confidence 999998 556555 57899999999999999
Q ss_pred HHHHHHhc
Q psy125 332 WLARKLIG 339 (385)
Q Consensus 332 ~l~~~i~~ 339 (385)
++.+.+..
T Consensus 160 ~L~~l~~~ 167 (581)
T TIGR00475 160 ELKNLLES 167 (581)
T ss_pred HHHHHHHh
Confidence 98876644
No 473
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.29 E-value=6e-12 Score=101.14 Aligned_cols=154 Identities=20% Similarity=0.255 Sum_probs=91.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE-Ee
Q psy125 12 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM-FD 90 (385)
Q Consensus 12 i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV-~d 90 (385)
+.++|++|+|||||++.|+. ...++.+.+.+...|...... ....++++--+++|- |-
T Consensus 31 ~fl~GpSGAGKSTllkLi~~------------------~e~pt~G~i~~~~~dl~~l~~---~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYG------------------EERPTRGKILVNGHDLSRLKG---REIPFLRRQIGVVFQDFR 89 (223)
T ss_pred EEEECCCCCCHHHHHHHHHh------------------hhcCCCceEEECCeecccccc---cccchhhheeeeEeeecc
Confidence 56889999999999999887 455666777777777654332 122334444343320 00
Q ss_pred C-CChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 91 V-TSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 91 ~-~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
+ .+...++++ -.|+.+++.+-+...++. .+..++.-.... ...=....+|+++++..|++++.+
T Consensus 90 LL~~~tvyeNV------------A~pL~v~G~~~~~i~~rV-~~~L~~VgL~~k--~~~lP~~LSGGEQQRvaIARAiV~ 154 (223)
T COG2884 90 LLPDRTVYENV------------ALPLRVIGKPPREIRRRV-SEVLDLVGLKHK--ARALPSQLSGGEQQRVAIARAIVN 154 (223)
T ss_pred ccccchHhhhh------------hhhhhccCCCHHHHHHHH-HHHHHHhccchh--hhcCccccCchHHHHHHHHHHHcc
Confidence 0 011111111 123334443222111111 111222111111 011122345999999999999999
Q ss_pred CCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 170 DPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 170 ~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
+|.+++ .|||+..+||.....+.+.+.+....
T Consensus 155 ~P~vLl-----ADEPTGNLDp~~s~~im~lfeeinr~ 186 (223)
T COG2884 155 QPAVLL-----ADEPTGNLDPDLSWEIMRLFEEINRL 186 (223)
T ss_pred CCCeEe-----ecCCCCCCChHHHHHHHHHHHHHhhc
Confidence 999999 99999999999999999998887554
No 474
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.29 E-value=2.2e-12 Score=108.43 Aligned_cols=153 Identities=24% Similarity=0.247 Sum_probs=99.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc-cchhhhhccCcEEEEEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-GLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~-~~~~~~~~~~d~illV~ 89 (385)
-++++|++||||||+++++.. .+.++.+.+.+...|+...+... +...+|.-|..+++
T Consensus 29 f~vliGpSGsGKTTtLkMINr------------------Liept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF--- 87 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINR------------------LIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF--- 87 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhc------------------ccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccC---
Confidence 368999999999999998666 66677788888777766543211 12234433332221
Q ss_pred eCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEEEEcCCCCCChHHHHHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYYDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
.. +- ..+|+.++..+-|.|.... .....++...-+. .+..--....+|+++++..++++
T Consensus 88 --------Ph---~T-----v~eNIa~VP~L~~w~k~~i--~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RA 149 (309)
T COG1125 88 --------PH---LT-----VAENIATVPKLLGWDKERI--KKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARA 149 (309)
T ss_pred --------CC---cc-----HHHHHHhhhhhcCCCHHHH--HHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHH
Confidence 00 00 0012223333445554322 2223333333333 23344455566999999999999
Q ss_pred HhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhc
Q psy125 167 LIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETA 207 (385)
Q Consensus 167 l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~ 207 (385)
+...|.+++ +|||+.++||-.+..+.+.+.+...+.
T Consensus 150 LAadP~ilL-----MDEPFgALDpI~R~~lQ~e~~~lq~~l 185 (309)
T COG1125 150 LAADPPILL-----MDEPFGALDPITRKQLQEEIKELQKEL 185 (309)
T ss_pred HhcCCCeEe-----ecCCccccChhhHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999998887663
No 475
>PRK00007 elongation factor G; Reviewed
Probab=99.29 E-value=3.7e-11 Score=120.51 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=86.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc--CCCC--Cccc------------ccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLT--GEFE--KKYV------------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~--~~~~--~~~~------------~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~ 71 (385)
+..+|+|+|+.|+|||||+++|+. +... ..+. ...|+|.+.......+.+..++++||||+.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 345999999999999999999873 2111 1111 35677887777777778899999999998776
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 129 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~ 129 (385)
.......+..+|++++|+|+......+....| ..+.. .++|.++++||+|+....
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~--~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK--YKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH--cCCCEEEEEECCCCCCCC
Confidence 55566677899999999998876444432222 22222 478999999999987543
No 476
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.28 E-value=2.1e-11 Score=109.40 Aligned_cols=152 Identities=21% Similarity=0.198 Sum_probs=93.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
-++|+|+||||||||++++++ ...++.|.+.+...|.............|+++...+.
T Consensus 33 i~gllG~NGAGKTTllk~l~g------------------l~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~---- 90 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAG------------------LLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLY---- 90 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhC------------------CcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCC----
Confidence 479999999999999999887 5556677888777665442111111122333322110
Q ss_pred CCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeE-EEEcCCCCCChHHHHHHHHHHHhc
Q psy125 91 VTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY-YDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
...+..+...++..+.. ..+ .........+....+..- ...-..+.+++++++..|+.++.+
T Consensus 91 --~~lT~~e~l~~~~~l~~---~~~------------~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~ 153 (293)
T COG1131 91 --PELTVRENLEFFARLYG---LSK------------EEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH 153 (293)
T ss_pred --ccccHHHHHHHHHHHhC---CCh------------hHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc
Confidence 01111111122222221 100 011112222333333321 122245677999999999999999
Q ss_pred CCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 170 DPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 170 ~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 154 ~P~lli-----LDEPt~GLDp~~~~~~~~~l~~l~~~ 185 (293)
T COG1131 154 DPELLI-----LDEPTSGLDPESRREIWELLRELAKE 185 (293)
T ss_pred CCCEEE-----ECCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 999999 99999999999999999999998876
No 477
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.28 E-value=1.7e-11 Score=114.56 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=81.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCe-eEEEEEeeCCCccc----cCcccccc---ccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEK----FGGLRDGY---YIQ 296 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~----~~~~~~~~---~~~ 296 (385)
..|+++|.+|||||||++++..... .....+++|.......+... ...+.+|||||+.. ...+...| +..
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 4699999999999999999775432 22333444544443333222 45689999999753 22233444 446
Q ss_pred CcEEEEEEeCCCh---hhhhh----------------------------------------------hheeccccCCCch
Q psy125 297 GQCAIIMFDVTSR---ITYKN----------------------------------------------YYDISAKSNYNFE 327 (385)
Q Consensus 297 ~~~~ilv~d~~~~---~s~~~----------------------------------------------~~e~Sak~~~~v~ 327 (385)
++++|+|+|+++. .++++ ++++||+++.|++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~ 316 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLD 316 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHH
Confidence 9999999999864 34332 6889999999999
Q ss_pred HHHHHHHHHHhcCCC
Q psy125 328 KPFLWLARKLIGDPN 342 (385)
Q Consensus 328 ~~f~~l~~~i~~~~~ 342 (385)
++|.+|.+.+...+.
T Consensus 317 eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 317 ELLYAVAELLEETPE 331 (424)
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999998876544
No 478
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.28 E-value=1.2e-12 Score=105.99 Aligned_cols=154 Identities=23% Similarity=0.232 Sum_probs=103.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--chhhhhccCcEEEEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--LRDGYYIQGQCAIIM 88 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--~~~~~~~~~d~illV 88 (385)
-|+++||||+||||.++++++ ...++.+.+.+...|......+.+ +-..|++|...+
T Consensus 32 iVGLLGPNGAGKTT~Fymi~G------------------lv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI--- 90 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVG------------------LVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASI--- 90 (243)
T ss_pred EEEEECCCCCCceeEEEEEEE------------------EEecCCceEEECCcccccCChHHHhhcCcccccccchH---
Confidence 479999999999999999777 888999999999989887765443 335566664221
Q ss_pred EeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHHHHHH
Q psy125 89 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~l 167 (385)
|..+. .. .|+..++-....|....+...+...+...... ++-...+...+|++..+..|++++
T Consensus 91 --------Fr~Lt-V~-------dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 91 --------FRKLT-VE-------DNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred --------hhcCc-HH-------HHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHH
Confidence 21110 00 01111111222333322222222233333333 333445667789999999999999
Q ss_pred hcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 168 IGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 168 ~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
..+|.+++ +|||+.+.||.....+...++.....
T Consensus 155 a~~P~fiL-----LDEPFAGVDPiaV~dIq~iI~~L~~r 188 (243)
T COG1137 155 AANPKFIL-----LDEPFAGVDPIAVIDIQRIIKHLKDR 188 (243)
T ss_pred hcCCCEEE-----ecCCccCCCchhHHHHHHHHHHHHhC
Confidence 99999999 99999999999999999888877654
No 479
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.27 E-value=8.2e-11 Score=111.27 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=100.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccceeeeEEEEE-----------------EeCC-------------
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVF-----------------HTNR------------- 55 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~~~~g~t~~~~~~-----------------~~~~------------- 55 (385)
.+.++|+++|+-..|||||+.+|.+-.... ......|.|.+.-.. ....
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 467899999999999999999966422110 011111222111000 0000
Q ss_pred ---eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCCh-hhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh
Q psy125 56 ---GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR-ITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK 131 (385)
Q Consensus 56 ---~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~-~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~ 131 (385)
-...+.++|+||++.+.......+..+|++++|+|+... ...+.. +.+ .+.....-.++++++||+|+.+....
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~lgi~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIMKLKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHcCCCcEEEEEecccccCHHHH
Confidence 024689999999988776666677899999999999874 222222 222 22222334568899999998753322
Q ss_pred ----HHHHHHHHh---cCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125 132 ----AKSIVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 132 ----~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~l 167 (385)
.++..+... ...+++++||.++.|++.++..|...+
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 222222211 356899999999999999999888754
No 480
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.26 E-value=2e-11 Score=119.63 Aligned_cols=105 Identities=13% Similarity=0.064 Sum_probs=78.4
Q ss_pred CCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc------ccccc--ccCcEEEE
Q psy125 231 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL------RDGYY--IQGQCAII 302 (385)
Q Consensus 231 G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~~~~--~~~~~~il 302 (385)
|.+||||||++|++.+..+ .....+|+|.......+...+..+.+|||||+..+... ...|+ +++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ--TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC--eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8899999999999886654 34445566665554433333456899999999887664 23343 47999999
Q ss_pred EEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125 303 MFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWLARKL 337 (385)
Q Consensus 303 v~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l~~~i 337 (385)
|+|.++.+.... +++|||++|.|++++|+++++..
T Consensus 79 VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 79 VVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred EecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 999997543222 79999999999999999998864
No 481
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.5e-10 Score=107.70 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=108.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC---eeEEEEEEeCCCccccccchhhhhccCc
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR---GAIRFNVWDTAGQEKFGGLRDGYYIQGQ 83 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~---~~~~~~i~Dt~g~~~~~~~~~~~~~~~d 83 (385)
.+.+-|+++|+--.|||||+..+=..+... ...-|.|...--+.+.. ....+.++||||++.|..++..-..-+|
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~--~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtD 80 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTD 80 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcccc--ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCcccc
Confidence 355789999999999999999844432221 12344555544444333 3457899999999998888877778899
Q ss_pred EEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhc--------CCeEEEEcCCCCCC
Q psy125 84 CAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--------NLQYYDISAKSNYN 155 (385)
Q Consensus 84 ~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~g 155 (385)
.+++|+++++..-.+.+.. +..+. ..+.|+++..||+|..+........++.... ...++++||++|.|
T Consensus 81 IaILVVa~dDGv~pQTiEA-I~hak--~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 81 IAILVVAADDGVMPQTIEA-INHAK--AAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEEEEccCCcchhHHHH-HHHHH--HCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999999999765554322 22222 2689999999999987544333222222222 13689999999999
Q ss_pred hHHHHHHHHHH
Q psy125 156 FEKPFLWLARK 166 (385)
Q Consensus 156 i~~l~~~i~~~ 166 (385)
+.+++..+.-.
T Consensus 158 i~eLL~~ill~ 168 (509)
T COG0532 158 IDELLELILLL 168 (509)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 482
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.26 E-value=1.9e-11 Score=104.32 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=54.9
Q ss_pred EEEEEeeCCCccccCcccccccccCcEEEEEEeCCCh----hhhhh----------------------------------
Q psy125 273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR----ITYKN---------------------------------- 314 (385)
Q Consensus 273 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----~s~~~---------------------------------- 314 (385)
..+.+|||||++.|....-..+..+|++++|+|++++ .+++.
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i 162 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQI 162 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHH
Confidence 6789999999988766666667788999999999973 23322
Q ss_pred -------------hheeccccCCCchHHHHHHHHHHhc
Q psy125 315 -------------YYDISAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 315 -------------~~e~Sak~~~~v~~~f~~l~~~i~~ 339 (385)
++++||++|.||+++|.+|.+.+..
T Consensus 163 ~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 163 KKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 5789999999999999999987754
No 483
>KOG1424|consensus
Probab=99.25 E-value=1.1e-10 Score=107.29 Aligned_cols=193 Identities=14% Similarity=0.083 Sum_probs=113.8
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCC----
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS---- 152 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~---- 152 (385)
..+..+|++|.++|+.++.-|... .+...+....+++..++++||.||........+..+....+++++..||..
T Consensus 170 RVlErSDivvqIVDARnPllfr~~-dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~ 248 (562)
T KOG1424|consen 170 RVLERSDIVVQIVDARNPLLFRSP-DLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQ 248 (562)
T ss_pred HHHhhcceEEEEeecCCccccCCh-hHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEeccccccc
Confidence 345789999999999999877542 333333334456788999999999998888888888888899999999875
Q ss_pred CCC--hHHHHHHHHHHHhcCCCcccccCCCCCCC-CCCCChhhhhhhHHhHHHH-HHhcCCCCchhhhhhcCCCCeeEEE
Q psy125 153 NYN--FEKPFLWLARKLIGDPNLEFVAMPALLPP-EVTMDPQWQSRIEQDLKEA-QETALPDDDEDLMAAEMDMPSFKCV 228 (385)
Q Consensus 153 ~~g--i~~l~~~i~~~l~~~~~~~~~~~~~~~ep-~~~~d~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (385)
+.+ +.+.+...-.-......... .++- ....+......+.. +... ........ + .. ......+.|.
T Consensus 249 ~~~~~~~e~~r~~d~~~~~~~~~~~-----~~~d~~i~r~~~d~~e~~~-v~~~~~~s~~~~~-~--t~-~~~~~~vtVG 318 (562)
T KOG1424|consen 249 LESKVLKEDRRSLDGVSRALGAIFV-----GEVDLKIARDKGDGEEIED-VEQLRLISAMEPT-P--TG-ERYKDVVTVG 318 (562)
T ss_pred ccccchhhhhhcccchhhhcccccc-----ccchhhhhhhcccccchhh-HHhhhhhhccccC-C--CC-cCCCceeEEE
Confidence 111 11111110000000000000 0000 00000000001111 1111 01100000 0 00 1111257899
Q ss_pred EECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc
Q psy125 229 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284 (385)
Q Consensus 229 ~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 284 (385)
++|-||||||++||.+. +.-...+++|+|-|.+.+++.+... +.+.|+||.-
T Consensus 319 ~VGYPNVGKSSTINaLv-G~KkVsVS~TPGkTKHFQTi~ls~~---v~LCDCPGLV 370 (562)
T KOG1424|consen 319 FVGYPNVGKSSTINALV-GRKKVSVSSTPGKTKHFQTIFLSPS---VCLCDCPGLV 370 (562)
T ss_pred eecCCCCchhHHHHHHh-cCceeeeecCCCCcceeEEEEcCCC---ceecCCCCcc
Confidence 99999999999999965 5556778999999999999988765 5799999963
No 484
>KOG1423|consensus
Probab=99.25 E-value=4.4e-11 Score=102.90 Aligned_cols=127 Identities=14% Similarity=0.151 Sum_probs=95.7
Q ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc--------
Q psy125 220 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD-------- 291 (385)
Q Consensus 220 ~~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------- 291 (385)
.....+.++++|.||||||+|.|..++... ...+....+|+......+..+...+.++||||.-.-...+.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv-~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKV-SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCcc-ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 345679999999999999999999876654 44455566888888777777788899999999643221111
Q ss_pred ----cccccCcEEEEEEeCCChhhhhh-----------------------------------------------------
Q psy125 292 ----GYYIQGQCAIIMFDVTSRITYKN----------------------------------------------------- 314 (385)
Q Consensus 292 ----~~~~~~~~~ilv~d~~~~~s~~~----------------------------------------------------- 314 (385)
..+..||++++|+|+++....-+
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 23568999999999996332222
Q ss_pred ---------------------hheeccccCCCchHHHHHHHHHHhcCCCccccc
Q psy125 315 ---------------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 347 (385)
Q Consensus 315 ---------------------~~e~Sak~~~~v~~~f~~l~~~i~~~~~~~~~~ 347 (385)
+|.+||++|.||+++=++|..+....+-.....
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~ 280 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPAD 280 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcc
Confidence 788999999999999999998876655444333
No 485
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.24 E-value=1e-10 Score=102.12 Aligned_cols=119 Identities=11% Similarity=0.060 Sum_probs=74.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc---c-------hh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---L-------RD 76 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~---~-------~~ 76 (385)
...++|+|+|.+|||||||+|+|++..... .....+.|.....+.....+..+.++||||...... . ..
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~-v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAA-TSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 457999999999999999999988765432 233444555555555555667899999999764421 0 11
Q ss_pred hhh--ccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcC---CCCEEEEEeCCCCcc
Q psy125 77 GYY--IQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD 127 (385)
Q Consensus 77 ~~~--~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~---~~~~ilv~nK~Dl~~ 127 (385)
.++ ...+++++|..++... .... ...+..+...++ -.++++|.|++|...
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 222 2578888887665432 1111 123333333222 246899999999753
No 486
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.23 E-value=1.2e-10 Score=103.05 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=70.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccch---hhhh---
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR---DGYY--- 79 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~---~~~~--- 79 (385)
+...++|+++|.+|+||||++|+|++.... .++...+.+..........++..+.++||||........ ...+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~-~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIA-TVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 356789999999999999999998875432 222222222222222223356889999999986432211 1111
Q ss_pred ---ccCcEEEEEEeCCCh--hhh-hcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125 80 ---IQGQCAIIMFDVTSR--ITY-KNVPNWHRDLVRVCENIPIVLCGNKVDIK 126 (385)
Q Consensus 80 ---~~~d~illV~d~~~~--~~~-~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~ 126 (385)
...|++|+|..++.. ... ..+...+..+.+..--.++++++++.|..
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 268999999665432 111 11222233332211235689999999965
No 487
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.9e-10 Score=99.77 Aligned_cols=154 Identities=20% Similarity=0.233 Sum_probs=91.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE-EE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII-MF 89 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill-V~ 89 (385)
.++++|.+|+|||||++++.. .-.++.|.+.+...|........ ...+++--+.|| =|
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~------------------Le~PtsG~v~v~G~di~~l~~~~---Lr~~R~~IGMIFQhF 92 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINL------------------LERPTSGSVFVDGQDLTALSEAE---LRQLRQKIGMIFQHF 92 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhc------------------cCCCCCceEEEcCEecccCChHH---HHHHHhhccEEeccc
Confidence 469999999999999998655 44555667776666654432110 011112212221 01
Q ss_pred eCCC-hhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHHHHHH
Q psy125 90 DVTS-RITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 90 d~~~-~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~l 167 (385)
.+-. ...++++ -.|.-+.+ .+ ..+......++...-+. ....-.....+|+++++..|+|++
T Consensus 93 nLLssrTV~~Nv------------A~PLeiag--~~--k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 93 NLLSSRTVFENV------------AFPLELAG--VP--KAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred cccccchHHhhh------------hhhHhhcC--CC--HHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence 1111 1111111 11211111 11 22223333344444333 222223345669999999999999
Q ss_pred hcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 168 IGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 168 ~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
..+|++++ +||+++++||.....+.+.|++...+
T Consensus 157 a~~P~iLL-----~DEaTSALDP~TT~sIL~LL~~In~~ 190 (339)
T COG1135 157 ANNPKILL-----CDEATSALDPETTQSILELLKDINRE 190 (339)
T ss_pred hcCCCEEE-----ecCccccCChHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999887654
No 488
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.22 E-value=3.5e-11 Score=98.17 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=78.0
Q ss_pred EECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC-eeEEEEEeeCCCccccCcccc-------cccccCcEE
Q psy125 229 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRD-------GYYIQGQCA 300 (385)
Q Consensus 229 ~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~-------~~~~~~~~~ 300 (385)
++|..|+||||+++++....+. ......+.+.......... ....+.+|||||+..+..... .+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVA-IVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccc-ccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5799999999999997754333 1222222333322222221 145689999999887765444 378899999
Q ss_pred EEEEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHH
Q psy125 301 IIMFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 301 ilv~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
++|+|.++..+... ++++||+++.||+++++++
T Consensus 80 l~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l 159 (163)
T cd00880 80 LFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHH
Confidence 99999998766555 8899999999999999999
Q ss_pred HHHH
Q psy125 334 ARKL 337 (385)
Q Consensus 334 ~~~i 337 (385)
.+.+
T Consensus 160 ~~~~ 163 (163)
T cd00880 160 IEAL 163 (163)
T ss_pred HhhC
Confidence 8753
No 489
>PRK10218 GTP-binding protein; Provisional
Probab=99.21 E-value=6e-11 Score=115.80 Aligned_cols=117 Identities=17% Similarity=0.229 Sum_probs=94.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc--Ccccccc------------ccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLT--GEFEKKY------------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL 289 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 289 (385)
.-+|+++|..++|||||+.+++. +.|...+ ..+.|.+.......+....+++.+|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 35899999999999999999985 4443322 235677887777777778889999999999999999
Q ss_pred cccccccCcEEEEEEeCCChhhhhh----------------------------------------------------hhe
Q psy125 290 RDGYYIQGQCAIIMFDVTSRITYKN----------------------------------------------------YYD 317 (385)
Q Consensus 290 ~~~~~~~~~~~ilv~d~~~~~s~~~----------------------------------------------------~~e 317 (385)
+..+++.+|++|+|+|+++....+. ++.
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~ 164 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVY 164 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEE
Confidence 9999999999999999998633222 367
Q ss_pred eccccCC----------CchHHHHHHHHHHhcC
Q psy125 318 ISAKSNY----------NFEKPFLWLARKLIGD 340 (385)
Q Consensus 318 ~Sak~~~----------~v~~~f~~l~~~i~~~ 340 (385)
+||++|. ++..+|+.|+..++..
T Consensus 165 ~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 165 ASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred eEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 8999998 5888888888887644
No 490
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.21 E-value=3.8e-11 Score=99.13 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=79.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc----------cCcccccccc
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK----------FGGLRDGYYI 295 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~ 295 (385)
.|+++|.+|+|||||++.+..+.+...+.++.+.+.....+..++ .+.+|||||... +..+...|+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999887777777788887777665555544 688999999432 3333344544
Q ss_pred ---cCcEEEEEEeCCChhhhhh------------------------------------------------hheeccccCC
Q psy125 296 ---QGQCAIIMFDVTSRITYKN------------------------------------------------YYDISAKSNY 324 (385)
Q Consensus 296 ---~~~~~ilv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~ 324 (385)
.++++++++|.++..+... ++++||+++.
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQ 157 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCC
Confidence 4578899999986532222 5688888888
Q ss_pred CchHHHHHHHHH
Q psy125 325 NFEKPFLWLARK 336 (385)
Q Consensus 325 ~v~~~f~~l~~~ 336 (385)
|+.+++.+|.+.
T Consensus 158 ~~~~l~~~l~~~ 169 (170)
T cd01876 158 GIDELRALIEKW 169 (170)
T ss_pred CHHHHHHHHHHh
Confidence 888888888764
No 491
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.21 E-value=2.2e-11 Score=110.42 Aligned_cols=54 Identities=28% Similarity=0.284 Sum_probs=48.4
Q ss_pred EEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125 147 DISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE 205 (385)
Q Consensus 147 ~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~ 205 (385)
.......+++++++..|++++.++|++++ +|||++++|+..+..+.+.+++...
T Consensus 133 ~~~~~~LS~G~~qrl~la~aL~~~P~lll-----LDEPt~gLD~~~~~~l~~~l~~l~~ 186 (306)
T PRK13537 133 DAKVGELSGGMKRRLTLARALVNDPDVLV-----LDEPTTGLDPQARHLMWERLRSLLA 186 (306)
T ss_pred cCchhhCCHHHHHHHHHHHHHhCCCCEEE-----EeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 34456678999999999999999999999 9999999999999999999988743
No 492
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.20 E-value=9.6e-11 Score=98.38 Aligned_cols=53 Identities=25% Similarity=0.255 Sum_probs=48.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhc
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETA 207 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~ 207 (385)
....+|++.++..|++++.-+|++++ +|||++.+|...+..+.+.+.+...++
T Consensus 139 P~eLSGGQ~QRiaIARAL~~~PklLI-----lDEptSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 139 PHELSGGQRQRIAIARALIPEPKLLI-----LDEPTSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred chhcChhHHHHHHHHHHhccCCCEEE-----ecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence 33455999999999999999999999 999999999999999999999987763
No 493
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.20 E-value=8.8e-11 Score=105.33 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=92.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
-++|+||+|||||||++.|.+ ...++.|.+.+...|........+ ...+..|. |.
T Consensus 31 f~vllGPSGcGKSTlLr~IAG------------------Le~~~~G~I~i~g~~vt~l~P~~R-~iamVFQ~------yA 85 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAG------------------LEEPTSGEILIDGRDVTDLPPEKR-GIAMVFQN------YA 85 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhC------------------CCCCCCceEEECCEECCCCChhHC-CEEEEeCC------cc
Confidence 378999999999999999888 566677788877766655332111 11111111 01
Q ss_pred CCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 91 VTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
+.-+-+. +. |+-+-+-..|.. ..+......+.++..+. .+...-....+|+++++.++++++..
T Consensus 86 LyPhmtV------~~-------Niaf~Lk~~~~~--k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 86 LYPHMTV------YE-------NIAFGLKLRGVP--KAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR 150 (338)
T ss_pred ccCCCcH------HH-------HhhhhhhhCCCc--hHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence 1111010 11 111111111111 12222233333333333 34444456677999999999999999
Q ss_pred CCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 170 DPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 170 ~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
+|++++ +|||.+.+|...+..+...+++...+
T Consensus 151 ~P~v~L-----~DEPlSnLDa~lR~~mr~ei~~lh~~ 182 (338)
T COG3839 151 KPKVFL-----LDEPLSNLDAKLRVLMRSEIKKLHER 182 (338)
T ss_pred CCCEEE-----ecCchhHhhHHHHHHHHHHHHHHHHh
Confidence 999999 99999999999999999999986554
No 494
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.20 E-value=2.8e-11 Score=117.69 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=82.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccc----cccceeeEEEEEEEEe------------CCeeEEEEEeeCCCccccCc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHT------------NRGAIRFNVWDTAGQEKFGG 288 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~l~i~Dt~G~~~~~~ 288 (385)
--|+++|.+++|||||++++....+... +..++|.++....... ......+.+|||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 3599999999999999999886655422 3344454443221100 00112378999999999999
Q ss_pred ccccccccCcEEEEEEeCCC---hhhhhh-------------------------------hheeccccCCCch----HHH
Q psy125 289 LRDGYYIQGQCAIIMFDVTS---RITYKN-------------------------------YYDISAKSNYNFE----KPF 330 (385)
Q Consensus 289 ~~~~~~~~~~~~ilv~d~~~---~~s~~~-------------------------------~~e~Sak~~~~v~----~~f 330 (385)
++..+++.+|++++|||+++ +.+++. |+|+||+.+.+|. +.|
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~ 164 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKV 164 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999997 566654 7899999987665 455
Q ss_pred HHHHHHHhc
Q psy125 331 LWLARKLIG 339 (385)
Q Consensus 331 ~~l~~~i~~ 339 (385)
..++.++.+
T Consensus 165 ~~lv~~l~~ 173 (590)
T TIGR00491 165 YNLVIKLHE 173 (590)
T ss_pred HHHHHHHHh
Confidence 566655543
No 495
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.20 E-value=1.3e-10 Score=96.85 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=92.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccch--hhhhccCcEEEEE
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR--DGYYIQGQCAIIM 88 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~--~~~~~~~d~illV 88 (385)
-++|+|+||+|||||++++.+ ..+...+.+.+...|..+........ ..+.++..
T Consensus 31 iv~llG~NGaGKTTlLkti~G------------------l~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR----- 87 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMG------------------LVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGR----- 87 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhC------------------CCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccc-----
Confidence 579999999999999999888 55556688888888887765332221 22222221
Q ss_pred EeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 89 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
..|..+. ....+. +-....+.+........+..+++-. ...-...-+-+.+|++++...|+++++
T Consensus 88 ------~iF~~LT-VeENL~-------~g~~~~~~~~~~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 88 ------RIFPRLT-VEENLL-------LGAYARRDKEAQERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred ------cchhhCc-HHHHHh-------hhhhcccccccccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 1122110 111111 0000111011111101112211100 001112235567799999999999999
Q ss_pred cCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 169 GDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 169 ~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
.+|++++ +|||+.++.|.-...+.+.+++...+
T Consensus 153 ~~PklLL-----LDEPs~GLaP~iv~~I~~~i~~l~~~ 185 (237)
T COG0410 153 SRPKLLL-----LDEPSEGLAPKIVEEIFEAIKELRKE 185 (237)
T ss_pred cCCCEEE-----ecCCccCcCHHHHHHHHHHHHHHHHc
Confidence 9999999 99999999999999999999887654
No 496
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.20 E-value=2.6e-11 Score=111.15 Aligned_cols=54 Identities=31% Similarity=0.307 Sum_probs=48.5
Q ss_pred EEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125 147 DISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE 205 (385)
Q Consensus 147 ~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~ 205 (385)
.....+.+++++++..|++++..+|++++ +|||++++|+..+..+.+.+++...
T Consensus 167 ~~~~~~LS~G~kqrv~lA~aL~~~P~lLi-----LDEPt~gLD~~~r~~l~~~l~~l~~ 220 (340)
T PRK13536 167 DARVSDLSGGMKRRLTLARALINDPQLLI-----LDEPTTGLDPHARHLIWERLRSLLA 220 (340)
T ss_pred CCChhhCCHHHHHHHHHHHHHhcCCCEEE-----EECCCCCCCHHHHHHHHHHHHHHHh
Confidence 33455677999999999999999999999 9999999999999999999998754
No 497
>KOG2484|consensus
Probab=99.19 E-value=1.2e-10 Score=103.83 Aligned_cols=167 Identities=13% Similarity=0.108 Sum_probs=109.6
Q ss_pred hhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCC
Q psy125 76 DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYN 155 (385)
Q Consensus 76 ~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (385)
...+..+|++|-|+|+.||.+-..-. .-..+.+..+++..|+|+||+|+...+...++..+.+..+..+.+..+....+
T Consensus 141 rkvve~sDVVleVlDARDPlgtR~~~-vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~ 219 (435)
T KOG2484|consen 141 RKVVEASDVVLEVLDARDPLGTRCPE-VEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQN 219 (435)
T ss_pred HHHHhhhheEEEeeeccCCCCCCChh-HHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccccccc
Confidence 34456799999999999998765422 22223333367899999999999999988888888888777666655443322
Q ss_pred hHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCC
Q psy125 156 FEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGT 235 (385)
Q Consensus 156 i~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~v 235 (385)
... ...+ .++-.-.+.+.+....+... ..-...+++.|+|-+||
T Consensus 220 ~~~-------~~~~---------------------~s~c~gae~l~~~lgny~~~--------~~lk~sIrvGViG~PNV 263 (435)
T KOG2484|consen 220 SNS-------KNLQ---------------------SSVCFGAETLMKVLGNYCRK--------GELKTSIRVGIIGYPNV 263 (435)
T ss_pred ccc-------cccc---------------------cchhhhHHHHHHHhcCcccc--------cccCcceEeeeecCCCC
Confidence 210 0000 00000111222221111100 11124689999999999
Q ss_pred CHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125 236 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283 (385)
Q Consensus 236 gks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 283 (385)
||||+||++...+ .....+++|.|...+.+.++.. |.|+|.||.
T Consensus 264 GKSSvINsL~~~k-~C~vg~~pGvT~smqeV~Ldk~---i~llDsPgi 307 (435)
T KOG2484|consen 264 GKSSVINSLKRRK-ACNVGNVPGVTRSMQEVKLDKK---IRLLDSPGI 307 (435)
T ss_pred ChhHHHHHHHHhc-cccCCCCccchhhhhheeccCC---ceeccCCce
Confidence 9999999976544 4778889999999998888764 689999996
No 498
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.19 E-value=8.8e-11 Score=95.41 Aligned_cols=147 Identities=20% Similarity=0.272 Sum_probs=92.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
-++++|+||+||||+++.|.+ ...++.+.+.+..+|+...........+.+....+
T Consensus 30 i~GlLG~NGAGKTT~LRmiat------------------lL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~g------ 85 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIAT------------------LLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERG------ 85 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHH------------------hccCCCceEEEeecccccChHHHhhhcceecCCcC------
Confidence 468999999999999999777 77888889999988886554322222221111111
Q ss_pred CCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHH------HHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 91 VTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSI------VFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
+..+-+.++...++..+.. +.......... ++.......+...| -+.+++..|+
T Consensus 86 lY~RlT~rEnl~~Fa~L~~---------------l~~~~~kari~~l~k~l~l~~~~~rRv~~~S-----~G~kqkV~iA 145 (245)
T COG4555 86 LYARLTARENLKYFARLNG---------------LSRKEIKARIAELSKRLQLLEYLDRRVGEFS-----TGMKQKVAIA 145 (245)
T ss_pred hhhhhhHHHHHHHHHHHhh---------------hhhhHHHHHHHHHHHHhChHHHHHHHHhhhc-----hhhHHHHHHH
Confidence 1111122222233333332 11111111111 12222222344444 7899999999
Q ss_pred HHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 165 RKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
+++.++|.+++ +|||++++|...+..+.+.+.....+
T Consensus 146 RAlvh~P~i~v-----lDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 146 RALVHDPSILV-----LDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred HHHhcCCCeEE-----EcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 99999999999 99999999999999999988876553
No 499
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.19 E-value=1.3e-10 Score=116.65 Aligned_cols=112 Identities=15% Similarity=0.114 Sum_probs=89.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc----------cc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD----------GY 293 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----------~~ 293 (385)
..+|+++|.+||||||++|++.+... .+...+|+|...+...+......+.+|||||+..+..... .|
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 46899999999999999999875433 5667788998888777777778899999999987754322 23
Q ss_pred c--ccCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHH
Q psy125 294 Y--IQGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 294 ~--~~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f 330 (385)
+ ..+|++++|+|.++.+.-.. ++++||++|.|++++.
T Consensus 81 l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALK 160 (772)
T ss_pred HhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence 2 48999999999998654222 7899999999999999
Q ss_pred HHHHHHH
Q psy125 331 LWLARKL 337 (385)
Q Consensus 331 ~~l~~~i 337 (385)
+.+.+..
T Consensus 161 ~~I~~~~ 167 (772)
T PRK09554 161 LAIDRHQ 167 (772)
T ss_pred HHHHHhh
Confidence 8888754
No 500
>PRK01889 GTPase RsgA; Reviewed
Probab=99.18 E-value=4e-10 Score=103.95 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=90.6
Q ss_pred hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCC
Q psy125 78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYN 155 (385)
Q Consensus 78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (385)
...+.|.+++|+++........++.++..+.. .+++.++|+||+|+.+... ......+ ..+++++.+|++++.|
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG 184 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence 35789999999999754444445555544433 5778899999999975421 1112211 3467899999999999
Q ss_pred hHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCC
Q psy125 156 FEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGT 235 (385)
Q Consensus 156 i~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~v 235 (385)
++++...+.. .-+++++|.+|+
T Consensus 185 l~~L~~~L~~----------------------------------------------------------g~~~~lvG~sgv 206 (356)
T PRK01889 185 LDVLAAWLSG----------------------------------------------------------GKTVALLGSSGV 206 (356)
T ss_pred HHHHHHHhhc----------------------------------------------------------CCEEEEECCCCc
Confidence 8876665321 126899999999
Q ss_pred CHHHHHHHHhcCccccc------cccceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125 236 GKTTFVKRHLTGEFEKK------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 286 (385)
Q Consensus 236 gks~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 286 (385)
|||++++.++...-... ......++.......+.++. .++||||...+
T Consensus 207 GKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~---~l~DtpG~~~~ 260 (356)
T PRK01889 207 GKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGG---LLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCC---eecCCCchhhh
Confidence 99999999774321110 00111122223333333332 58899997654
Done!