Query psy125
Match_columns 385
No_of_seqs 426 out of 4384
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 20:52:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 100.0 7.5E-40 2.6E-44 310.7 11.5 277 9-339 3-349 (436)
2 1mky_A Probable GTP-binding pr 100.0 6.3E-37 2.2E-41 290.8 20.3 282 10-340 2-356 (439)
3 4dcu_A GTP-binding protein ENG 100.0 4.7E-38 1.6E-42 300.0 11.0 280 7-340 21-370 (456)
4 4dkx_A RAS-related protein RAB 100.0 1.1E-29 3.9E-34 217.2 19.5 163 7-169 11-176 (216)
5 3gj0_A GTP-binding nuclear pro 100.0 5.4E-29 1.8E-33 215.2 18.2 208 4-211 10-217 (221)
6 4dkx_A RAS-related protein RAB 100.0 1.2E-28 4E-33 210.9 11.7 121 222-342 11-179 (216)
7 1x3s_A RAS-related protein RAB 99.9 9.6E-26 3.3E-30 190.6 19.6 165 7-171 13-180 (195)
8 3tw8_B RAS-related protein RAB 99.9 2.4E-25 8.2E-30 185.7 20.5 163 7-169 7-171 (181)
9 1r2q_A RAS-related protein RAB 99.9 2.2E-25 7.5E-30 183.9 19.0 163 6-168 3-168 (170)
10 1wms_A RAB-9, RAB9, RAS-relate 99.9 4.6E-25 1.6E-29 183.4 20.5 165 6-170 4-175 (177)
11 1z0f_A RAB14, member RAS oncog 99.9 6.2E-25 2.1E-29 182.8 20.6 162 7-168 13-177 (179)
12 2gf9_A RAS-related protein RAB 99.9 1.2E-24 4.1E-29 183.0 22.3 162 8-169 21-185 (189)
13 3gj0_A GTP-binding nuclear pro 99.9 6E-26 2E-30 196.0 14.4 165 221-385 12-221 (221)
14 1z2a_A RAS-related protein RAB 99.9 6.6E-25 2.3E-29 180.7 20.0 162 8-169 4-167 (168)
15 1ek0_A Protein (GTP-binding pr 99.9 3.8E-25 1.3E-29 182.4 18.6 161 7-167 1-167 (170)
16 2a5j_A RAS-related protein RAB 99.9 8.7E-25 3E-29 184.2 21.0 163 7-169 19-184 (191)
17 3q3j_B RHO-related GTP-binding 99.9 3E-25 1E-29 190.5 18.2 165 6-171 24-205 (214)
18 1z0j_A RAB-22, RAS-related pro 99.9 9E-25 3.1E-29 180.3 20.5 162 7-168 4-168 (170)
19 2fg5_A RAB-22B, RAS-related pr 99.9 4.5E-25 1.5E-29 186.2 18.6 163 7-169 21-186 (192)
20 2fn4_A P23, RAS-related protei 99.9 1.1E-24 3.6E-29 181.7 20.7 166 3-169 3-172 (181)
21 2atx_A Small GTP binding prote 99.9 7.3E-25 2.5E-29 185.1 19.9 162 7-169 16-193 (194)
22 1c1y_A RAS-related protein RAP 99.9 1.2E-24 4.2E-29 178.9 20.8 161 7-168 1-166 (167)
23 3kkq_A RAS-related protein M-R 99.9 1.6E-24 5.5E-29 181.2 21.8 163 6-169 15-182 (183)
24 3t5g_A GTP-binding protein RHE 99.9 7.8E-25 2.7E-29 182.8 19.6 163 7-170 4-170 (181)
25 2efe_B Small GTP-binding prote 99.9 8.9E-25 3E-29 182.3 19.9 163 7-169 10-175 (181)
26 2ew1_A RAS-related protein RAB 99.9 6.4E-25 2.2E-29 186.4 19.2 162 8-169 25-189 (201)
27 1z08_A RAS-related protein RAB 99.9 8.5E-25 2.9E-29 180.5 19.1 162 7-168 4-168 (170)
28 3bc1_A RAS-related protein RAB 99.9 1.3E-24 4.3E-29 183.5 20.1 169 1-169 3-185 (195)
29 1zbd_A Rabphilin-3A; G protein 99.9 1.2E-24 4.2E-29 185.1 20.1 165 5-169 4-171 (203)
30 2hxs_A RAB-26, RAS-related pro 99.9 9.4E-25 3.2E-29 181.7 19.0 165 6-170 3-174 (178)
31 2hup_A RAS-related protein RAB 99.9 8.3E-25 2.8E-29 185.9 18.9 163 8-170 28-194 (201)
32 1z06_A RAS-related protein RAB 99.9 1.1E-24 3.6E-29 183.4 19.4 164 5-168 16-187 (189)
33 2oil_A CATX-8, RAS-related pro 99.9 1.9E-24 6.6E-29 182.4 21.0 162 8-169 24-188 (193)
34 3tkl_A RAS-related protein RAB 99.9 2.6E-24 8.9E-29 181.9 21.7 162 8-169 15-179 (196)
35 1u8z_A RAS-related protein RAL 99.9 1.4E-24 4.8E-29 178.6 19.4 161 7-168 2-166 (168)
36 3reg_A RHO-like small GTPase; 99.9 1.5E-24 5.1E-29 183.3 20.0 163 7-170 21-189 (194)
37 2fu5_C RAS-related protein RAB 99.9 4.3E-25 1.5E-29 184.7 16.5 162 8-169 7-171 (183)
38 3c5c_A RAS-like protein 12; GD 99.9 1.4E-24 4.7E-29 182.4 19.5 160 7-168 19-185 (187)
39 3cbq_A GTP-binding protein REM 99.9 1.3E-24 4.3E-29 183.8 19.1 165 5-169 19-188 (195)
40 2bcg_Y Protein YP2, GTP-bindin 99.9 2.5E-24 8.6E-29 183.7 21.0 168 1-169 1-171 (206)
41 1g16_A RAS-related protein SEC 99.9 1.5E-24 5.1E-29 178.9 18.9 162 8-169 2-165 (170)
42 1vg8_A RAS-related protein RAB 99.9 1.7E-24 5.9E-29 184.7 19.9 164 6-169 5-175 (207)
43 2bme_A RAB4A, RAS-related prot 99.9 2.1E-24 7.1E-29 181.0 19.7 163 7-169 8-173 (186)
44 3q85_A GTP-binding protein REM 99.9 2.3E-24 7.8E-29 177.8 19.5 161 9-169 2-167 (169)
45 3ihw_A Centg3; RAS, centaurin, 99.9 2.5E-24 8.5E-29 180.3 19.9 159 4-169 15-180 (184)
46 2g6b_A RAS-related protein RAB 99.9 3.4E-24 1.2E-28 178.6 20.6 164 7-170 8-175 (180)
47 2il1_A RAB12; G-protein, GDP, 99.9 1.4E-24 4.6E-29 183.2 18.0 163 7-169 24-190 (192)
48 2gco_A H9, RHO-related GTP-bin 99.9 3E-24 1E-28 182.5 19.9 164 4-168 20-199 (201)
49 2y8e_A RAB-protein 6, GH09086P 99.9 2.5E-24 8.6E-29 179.1 19.0 162 7-168 12-176 (179)
50 1mh1_A RAC1; GTP-binding, GTPa 99.9 3E-24 1E-28 179.9 19.5 164 6-170 2-181 (186)
51 2j0v_A RAC-like GTP-binding pr 99.9 2E-24 7E-29 185.1 18.8 166 4-170 3-181 (212)
52 2p5s_A RAS and EF-hand domain 99.9 1.4E-24 4.9E-29 184.1 17.7 163 7-169 26-197 (199)
53 3dz8_A RAS-related protein RAB 99.9 3.4E-25 1.2E-29 186.8 13.7 162 8-169 22-186 (191)
54 1ky3_A GTP-binding protein YPT 99.9 2.6E-24 8.9E-29 179.5 18.9 164 6-169 5-178 (182)
55 2a9k_A RAS-related protein RAL 99.9 3.1E-24 1.1E-28 179.9 19.2 164 5-169 14-181 (187)
56 1kao_A RAP2A; GTP-binding prot 99.9 2.2E-24 7.6E-29 177.2 17.9 161 7-168 1-165 (167)
57 3oes_A GTPase rhebl1; small GT 99.9 1.8E-24 6.2E-29 183.8 17.6 163 7-170 22-188 (201)
58 4djt_A GTP-binding nuclear pro 99.9 3.2E-24 1.1E-28 184.6 19.3 169 7-175 9-181 (218)
59 3q72_A GTP-binding protein RAD 99.9 3.1E-24 1.1E-28 176.4 18.3 159 8-168 1-163 (166)
60 2o52_A RAS-related protein RAB 99.9 2.7E-24 9.2E-29 182.6 18.3 162 8-169 24-188 (200)
61 3cpj_B GTP-binding protein YPT 99.9 3.9E-24 1.3E-28 184.8 19.4 163 8-170 12-177 (223)
62 2bov_A RAla, RAS-related prote 99.9 6.7E-24 2.3E-28 180.9 20.7 163 6-169 11-177 (206)
63 2nzj_A GTP-binding protein REM 99.9 4.7E-24 1.6E-28 176.9 18.8 161 7-168 2-168 (175)
64 1m7b_A RND3/RHOE small GTP-bin 99.9 2.9E-24 9.9E-29 179.9 17.7 163 6-169 4-183 (184)
65 2fv8_A H6, RHO-related GTP-bin 99.9 5.5E-24 1.9E-28 181.7 19.3 165 5-170 21-201 (207)
66 2ce2_X GTPase HRAS; signaling 99.9 1.2E-23 4.1E-28 172.5 20.6 162 7-169 1-165 (166)
67 1gwn_A RHO-related GTP-binding 99.9 3.2E-24 1.1E-28 182.8 17.3 162 7-169 26-204 (205)
68 2iwr_A Centaurin gamma 1; ANK 99.9 6.9E-24 2.3E-28 176.5 19.0 156 7-169 5-169 (178)
69 3clv_A RAB5 protein, putative; 99.9 1.5E-23 5E-28 178.5 21.3 162 7-169 5-204 (208)
70 2q3h_A RAS homolog gene family 99.9 8.4E-24 2.9E-28 179.6 19.6 162 7-169 18-195 (201)
71 3t1o_A Gliding protein MGLA; G 99.9 5.3E-25 1.8E-29 186.3 12.0 162 7-169 12-192 (198)
72 2j1l_A RHO-related GTP-binding 99.9 5.3E-24 1.8E-28 182.8 18.3 163 7-170 32-210 (214)
73 3con_A GTPase NRAS; structural 99.9 1.3E-23 4.5E-28 176.7 19.9 165 4-169 16-183 (190)
74 3cph_A RAS-related protein SEC 99.9 1.3E-23 4.6E-28 180.0 20.2 163 7-169 18-182 (213)
75 2atv_A RERG, RAS-like estrogen 99.9 1.3E-23 4.4E-28 177.8 19.4 161 7-169 26-191 (196)
76 4dsu_A GTPase KRAS, isoform 2B 99.9 2.1E-23 7.2E-28 175.2 20.2 161 8-169 3-166 (189)
77 3bwd_D RAC-like GTP-binding pr 99.9 2.2E-24 7.5E-29 180.1 14.0 162 7-169 6-181 (182)
78 4bas_A ADP-ribosylation factor 99.9 7.3E-24 2.5E-28 179.6 17.3 159 7-169 15-189 (199)
79 2g3y_A GTP-binding protein GEM 99.9 1.7E-23 5.8E-28 178.4 18.9 162 7-168 35-202 (211)
80 2erx_A GTP-binding protein DI- 99.9 1.6E-23 5.6E-28 172.9 17.7 160 8-168 2-166 (172)
81 2f7s_A C25KG, RAS-related prot 99.9 6.2E-24 2.1E-28 182.7 15.4 162 8-169 24-199 (217)
82 2gf0_A GTP-binding protein DI- 99.9 1.9E-23 6.6E-28 177.0 18.2 164 6-170 5-172 (199)
83 1ksh_A ARF-like protein 2; sma 99.9 2.3E-23 7.7E-28 174.7 17.5 159 7-170 16-181 (186)
84 4gzl_A RAS-related C3 botulinu 99.9 2E-23 6.9E-28 177.8 17.3 160 7-167 28-203 (204)
85 1zj6_A ADP-ribosylation factor 99.9 2.1E-23 7.3E-28 175.1 17.0 159 7-170 14-179 (187)
86 2yc2_C IFT27, small RAB-relate 99.9 2.8E-24 9.5E-29 183.5 11.6 163 7-169 18-192 (208)
87 3iev_A GTP-binding protein ERA 99.9 2.6E-23 9E-28 187.8 18.6 226 5-241 6-256 (308)
88 2cjw_A GTP-binding protein GEM 99.9 7.9E-23 2.7E-27 172.3 20.3 163 6-168 3-171 (192)
89 1zd9_A ADP-ribosylation factor 99.9 1.8E-23 6.1E-28 175.7 15.9 158 7-168 20-184 (188)
90 1f6b_A SAR1; gtpases, N-termin 99.9 1.8E-23 6.2E-28 177.2 15.9 157 5-166 21-196 (198)
91 2h17_A ADP-ribosylation factor 99.9 1.2E-23 4.2E-28 175.6 14.1 155 7-166 19-180 (181)
92 1m2o_B GTP-binding protein SAR 99.9 3.4E-23 1.2E-27 174.3 16.7 157 5-166 19-189 (190)
93 2h57_A ADP-ribosylation factor 99.9 3.2E-23 1.1E-27 174.4 16.4 157 7-167 19-185 (190)
94 1upt_A ARL1, ADP-ribosylation 99.9 1.1E-22 3.8E-27 167.8 19.0 158 7-169 5-169 (171)
95 1fzq_A ADP-ribosylation factor 99.9 3.7E-23 1.3E-27 172.7 15.2 157 7-168 14-177 (181)
96 2b6h_A ADP-ribosylation factor 99.9 6.9E-23 2.3E-27 172.7 16.2 159 5-168 25-190 (192)
97 1r8s_A ADP-ribosylation factor 99.9 5E-23 1.7E-27 168.8 14.7 154 10-168 1-161 (164)
98 3l0i_B RAS-related protein RAB 99.9 1.1E-24 3.6E-29 185.0 4.1 162 8-169 32-196 (199)
99 2f9l_A RAB11B, member RAS onco 99.9 1E-21 3.5E-26 166.5 21.2 164 6-169 2-168 (199)
100 2zej_A Dardarin, leucine-rich 99.9 3.8E-23 1.3E-27 173.0 12.2 161 9-169 2-178 (184)
101 1moz_A ARL1, ADP-ribosylation 99.9 9E-23 3.1E-27 170.5 14.2 157 7-168 16-179 (183)
102 3llu_A RAS-related GTP-binding 99.9 2.1E-22 7.1E-27 170.3 15.4 160 6-167 17-195 (196)
103 1wf3_A GTP-binding protein; GT 99.9 1.9E-22 6.4E-27 181.2 15.9 199 7-217 5-214 (301)
104 2x77_A ADP-ribosylation factor 99.9 2.5E-22 8.7E-27 168.7 14.5 158 7-169 20-184 (189)
105 1oix_A RAS-related protein RAB 99.9 4.9E-21 1.7E-25 161.1 20.5 160 8-167 28-190 (191)
106 2wkq_A NPH1-1, RAS-related C3 99.9 3.5E-21 1.2E-25 176.4 19.1 162 8-170 154-331 (332)
107 2ew1_A RAS-related protein RAB 99.9 6.6E-22 2.3E-26 167.8 12.9 118 223-340 25-190 (201)
108 2wji_A Ferrous iron transport 99.9 1.7E-21 5.8E-26 160.0 14.9 154 7-167 1-163 (165)
109 3reg_A RHO-like small GTPase; 99.9 1.8E-21 6.1E-26 164.3 15.1 120 222-342 21-191 (194)
110 3q3j_B RHO-related GTP-binding 99.9 7.5E-22 2.6E-26 169.3 12.8 120 222-342 25-206 (214)
111 1z08_A RAS-related protein RAB 99.9 1.5E-21 5E-26 160.9 13.9 117 223-339 5-169 (170)
112 3t5g_A GTP-binding protein RHE 99.9 1.2E-21 4.2E-26 163.3 13.6 119 223-342 5-172 (181)
113 3th5_A RAS-related C3 botulinu 99.8 8.2E-24 2.8E-28 180.2 0.0 160 7-167 28-203 (204)
114 2hxs_A RAB-26, RAS-related pro 99.9 9.6E-22 3.3E-26 163.4 12.5 120 222-341 4-175 (178)
115 1r2q_A RAS-related protein RAB 99.9 8.1E-22 2.8E-26 162.4 11.8 117 223-339 5-169 (170)
116 2a5j_A RAS-related protein RAB 99.9 9.8E-22 3.3E-26 165.5 12.1 119 222-340 19-185 (191)
117 2fu5_C RAS-related protein RAB 99.9 3E-22 1E-26 167.4 8.6 118 223-340 7-172 (183)
118 3o47_A ADP-ribosylation factor 99.9 2E-21 6.9E-26 177.0 14.7 158 7-169 163-327 (329)
119 2hup_A RAS-related protein RAB 99.9 7.1E-22 2.4E-26 167.8 10.9 120 222-341 27-195 (201)
120 1ek0_A Protein (GTP-binding pr 99.9 1.1E-21 3.9E-26 161.5 11.8 116 224-339 3-169 (170)
121 1z0j_A RAB-22, RAS-related pro 99.9 2E-21 6.9E-26 160.0 12.9 117 223-339 5-169 (170)
122 2lkc_A Translation initiation 99.9 4E-21 1.4E-25 159.6 14.8 161 3-169 2-171 (178)
123 3tkl_A RAS-related protein RAB 99.9 2.3E-21 7.9E-26 163.7 13.2 119 223-341 15-181 (196)
124 2gf9_A RAS-related protein RAB 99.9 4.2E-21 1.4E-25 161.3 14.6 117 223-339 21-185 (189)
125 3c5h_A Glucocorticoid receptor 99.9 1E-21 3.5E-26 172.9 11.1 162 6-167 16-253 (255)
126 3ihw_A Centg3; RAS, centaurin, 99.9 2.3E-21 8E-26 162.1 12.6 114 220-340 16-181 (184)
127 1z2a_A RAS-related protein RAB 99.9 3.3E-21 1.1E-25 158.4 13.3 117 223-339 4-167 (168)
128 2qu8_A Putative nucleolar GTP- 99.9 6.4E-21 2.2E-25 165.1 15.7 161 7-169 27-205 (228)
129 2oil_A CATX-8, RAS-related pro 99.9 3.9E-21 1.3E-25 162.0 14.0 119 222-340 23-189 (193)
130 3tw8_B RAS-related protein RAB 99.9 4.8E-21 1.6E-25 159.5 14.2 118 223-340 8-172 (181)
131 1x3s_A RAS-related protein RAB 99.9 3.8E-21 1.3E-25 162.2 13.7 120 223-342 14-181 (195)
132 3kkq_A RAS-related protein M-R 99.9 4.4E-21 1.5E-25 160.2 13.9 118 221-339 15-182 (183)
133 2p5s_A RAS and EF-hand domain 99.9 1.5E-21 5E-26 165.5 11.1 117 223-339 27-197 (199)
134 1wms_A RAB-9, RAB9, RAS-relate 99.9 4E-21 1.4E-25 159.4 13.5 118 223-340 6-175 (177)
135 2il1_A RAB12; G-protein, GDP, 99.9 1.5E-21 5.1E-26 164.5 10.9 119 222-340 24-191 (192)
136 1z0f_A RAB14, member RAS oncog 99.9 2.6E-21 9.1E-26 160.7 12.3 118 222-339 13-178 (179)
137 3c5c_A RAS-like protein 12; GD 99.9 3.2E-21 1.1E-25 161.7 12.8 116 222-339 19-186 (187)
138 3cpj_B GTP-binding protein YPT 99.9 3.8E-21 1.3E-25 166.0 13.6 123 223-345 12-182 (223)
139 4djt_A GTP-binding nuclear pro 99.9 2.6E-21 8.9E-26 166.4 12.5 134 223-356 10-192 (218)
140 2fh5_B SR-beta, signal recogni 99.9 7.4E-21 2.5E-25 163.1 15.2 157 7-166 5-213 (214)
141 3oes_A GTPase rhebl1; small GT 99.9 2E-21 6.8E-26 165.0 11.5 120 223-343 23-191 (201)
142 2fg5_A RAB-22B, RAS-related pr 99.9 2.3E-21 7.8E-26 163.4 11.8 118 223-340 22-187 (192)
143 2bme_A RAB4A, RAS-related prot 99.9 3.6E-21 1.2E-25 161.1 12.8 118 223-340 9-174 (186)
144 2efe_B Small GTP-binding prote 99.9 2.8E-21 9.6E-26 161.0 12.0 119 222-340 10-176 (181)
145 2bcg_Y Protein YP2, GTP-bindin 99.9 5.1E-21 1.8E-25 163.0 13.7 120 223-342 7-174 (206)
146 1svi_A GTP-binding protein YSX 99.9 9.9E-21 3.4E-25 159.7 14.8 155 7-167 21-193 (195)
147 1c1y_A RAS-related protein RAP 99.9 5.1E-21 1.7E-25 157.1 12.5 115 223-338 2-166 (167)
148 1zbd_A Rabphilin-3A; G protein 99.9 5.5E-21 1.9E-25 162.4 13.1 118 223-340 7-172 (203)
149 3dz8_A RAS-related protein RAB 99.9 4E-22 1.4E-26 167.8 5.9 119 223-341 22-188 (191)
150 1g16_A RAS-related protein SEC 99.9 4.4E-21 1.5E-25 158.0 12.0 117 224-340 3-166 (170)
151 2fn4_A P23, RAS-related protei 99.8 6.5E-21 2.2E-25 158.6 13.1 119 222-341 7-174 (181)
152 2o52_A RAS-related protein RAB 99.8 2.8E-21 9.7E-26 163.9 11.1 118 223-340 24-189 (200)
153 3cbq_A GTP-binding protein REM 99.8 2.7E-21 9.2E-26 163.3 10.7 120 222-341 21-190 (195)
154 2g6b_A RAS-related protein RAB 99.8 1.1E-20 3.8E-25 157.2 14.2 119 222-340 8-175 (180)
155 3r7w_A Gtpase1, GTP-binding pr 99.8 1.5E-20 5.1E-25 169.8 16.1 159 8-168 2-180 (307)
156 3q85_A GTP-binding protein REM 99.8 5.3E-21 1.8E-25 157.5 12.0 117 224-340 2-168 (169)
157 3q72_A GTP-binding protein RAD 99.8 5E-21 1.7E-25 157.1 11.5 114 224-339 2-164 (166)
158 1z06_A RAS-related protein RAB 99.8 3.4E-21 1.2E-25 161.8 10.7 118 222-339 18-188 (189)
159 3lvq_E ARF-GAP with SH3 domain 99.8 1.8E-20 6E-25 181.1 17.1 158 7-169 320-484 (497)
160 1vg8_A RAS-related protein RAB 99.8 1.3E-20 4.4E-25 160.6 14.2 119 223-341 7-177 (207)
161 2j0v_A RAC-like GTP-binding pr 99.8 1.2E-20 4E-25 161.5 13.8 118 223-341 8-182 (212)
162 1ega_A Protein (GTP-binding pr 99.8 1.8E-20 6.2E-25 168.6 15.6 196 7-215 6-213 (301)
163 2iwr_A Centaurin gamma 1; ANK 99.8 7.2E-21 2.5E-25 158.1 12.1 112 222-340 5-170 (178)
164 2cjw_A GTP-binding protein GEM 99.8 8E-21 2.7E-25 160.0 12.3 116 223-339 5-172 (192)
165 2y8e_A RAB-protein 6, GH09086P 99.8 7.4E-21 2.5E-25 158.0 11.9 117 223-339 13-177 (179)
166 1m7b_A RND3/RHOE small GTP-bin 99.8 1E-20 3.5E-25 158.2 12.8 117 223-340 6-184 (184)
167 1mh1_A RAC1; GTP-binding, GTPa 99.8 2.1E-20 7.3E-25 156.3 14.7 118 223-341 4-182 (186)
168 2g3y_A GTP-binding protein GEM 99.8 6.4E-21 2.2E-25 162.5 11.1 118 222-340 35-204 (211)
169 2q3h_A RAS homolog gene family 99.8 1.4E-20 4.7E-25 159.7 13.1 118 222-340 18-196 (201)
170 2atx_A Small GTP binding prote 99.8 1.7E-20 5.9E-25 158.2 13.6 116 223-339 17-193 (194)
171 2gj8_A MNME, tRNA modification 99.8 4E-21 1.4E-25 158.9 9.4 155 8-169 3-166 (172)
172 3a1s_A Iron(II) transport prot 99.8 1.8E-20 6.2E-25 164.8 13.6 156 7-169 3-167 (258)
173 1gwn_A RHO-related GTP-binding 99.8 1.4E-20 4.6E-25 160.2 12.4 116 223-339 27-204 (205)
174 1ky3_A GTP-binding protein YPT 99.8 1.1E-20 3.6E-25 157.5 11.4 117 223-339 7-178 (182)
175 1u8z_A RAS-related protein RAL 99.8 1.8E-20 6.1E-25 153.8 12.5 116 223-339 3-167 (168)
176 2wjg_A FEOB, ferrous iron tran 99.8 3.5E-20 1.2E-24 155.4 14.4 157 7-170 5-170 (188)
177 1kao_A RAP2A; GTP-binding prot 99.8 1.2E-20 4E-25 154.8 11.0 116 223-339 2-166 (167)
178 4dhe_A Probable GTP-binding pr 99.8 1.8E-20 6.1E-25 161.7 12.6 161 6-169 26-211 (223)
179 2j1l_A RHO-related GTP-binding 99.8 1.9E-20 6.5E-25 160.5 12.7 119 222-341 32-211 (214)
180 2gco_A H9, RHO-related GTP-bin 99.8 2.7E-20 9.2E-25 158.0 13.4 119 220-339 21-200 (201)
181 4gzl_A RAS-related C3 botulinu 99.8 2.2E-20 7.7E-25 158.8 12.8 115 222-337 28-203 (204)
182 4dsu_A GTPase KRAS, isoform 2B 99.8 2.5E-20 8.7E-25 156.2 12.8 117 223-340 3-167 (189)
183 2nzj_A GTP-binding protein REM 99.8 1.9E-20 6.4E-25 155.0 11.8 116 223-339 3-169 (175)
184 2dyk_A GTP-binding protein; GT 99.8 1.5E-20 5E-25 153.4 11.0 151 10-167 2-160 (161)
185 2fv8_A H6, RHO-related GTP-bin 99.8 5.1E-20 1.7E-24 157.0 14.3 117 223-340 24-201 (207)
186 3bc1_A RAS-related protein RAB 99.8 2.8E-20 9.7E-25 156.6 12.6 118 223-340 10-186 (195)
187 3clv_A RAB5 protein, putative; 99.8 3.8E-20 1.3E-24 157.3 13.4 118 223-340 6-205 (208)
188 3cph_A RAS-related protein SEC 99.8 3.3E-20 1.1E-24 158.8 13.0 118 223-340 19-183 (213)
189 3i8s_A Ferrous iron transport 99.8 7.3E-21 2.5E-25 169.0 9.1 157 7-170 1-170 (274)
190 4bas_A ADP-ribosylation factor 99.8 3.1E-20 1.1E-24 157.2 12.6 116 222-341 15-191 (199)
191 1zd9_A ADP-ribosylation factor 99.8 1.3E-20 4.4E-25 158.2 10.1 115 221-339 19-185 (188)
192 2bov_A RAla, RAS-related prote 99.8 3.6E-20 1.2E-24 157.6 12.5 118 222-340 12-178 (206)
193 3l0i_B RAS-related protein RAB 99.8 1.7E-21 5.9E-26 165.1 4.2 118 223-340 32-197 (199)
194 3pqc_A Probable GTP-binding pr 99.8 1.8E-19 6.1E-24 151.8 16.6 155 7-168 21-193 (195)
195 2f7s_A C25KG, RAS-related prot 99.8 1.8E-20 6.2E-25 161.0 10.5 119 222-340 23-200 (217)
196 2atv_A RERG, RAS-like estrogen 99.8 3E-20 1E-24 157.0 11.4 116 223-340 27-192 (196)
197 1fzq_A ADP-ribosylation factor 99.8 1.4E-20 4.6E-25 157.1 8.9 113 223-340 15-179 (181)
198 2a9k_A RAS-related protein RAL 99.8 4.7E-20 1.6E-24 154.2 12.1 118 222-340 16-182 (187)
199 3bwd_D RAC-like GTP-binding pr 99.8 1.4E-20 4.6E-25 157.0 8.6 116 223-339 7-181 (182)
200 1r8s_A ADP-ribosylation factor 99.8 1.3E-20 4.4E-25 154.3 8.2 111 225-340 1-163 (164)
201 3t1o_A Gliding protein MGLA; G 99.8 1.1E-20 3.8E-25 159.6 8.0 117 223-340 13-193 (198)
202 3b1v_A Ferrous iron uptake tra 99.8 3.4E-20 1.2E-24 163.9 11.4 152 9-168 3-163 (272)
203 1upt_A ARL1, ADP-ribosylation 99.8 8.3E-20 2.8E-24 150.5 13.0 113 223-340 6-170 (171)
204 1ksh_A ARF-like protein 2; sma 99.8 6.5E-20 2.2E-24 153.5 12.4 113 223-340 17-181 (186)
205 1zj6_A ADP-ribosylation factor 99.8 3.2E-20 1.1E-24 155.6 10.4 113 223-340 15-179 (187)
206 2erx_A GTP-binding protein DI- 99.8 6E-20 2E-24 151.4 11.5 116 223-339 2-167 (172)
207 3iby_A Ferrous iron transport 99.8 2.5E-20 8.5E-25 163.6 9.6 150 10-166 2-164 (256)
208 3k53_A Ferrous iron transport 99.8 9.2E-20 3.2E-24 161.9 13.3 158 7-170 1-167 (271)
209 2b6h_A ADP-ribosylation factor 99.8 5.6E-20 1.9E-24 154.8 11.0 114 221-339 26-191 (192)
210 2h17_A ADP-ribosylation factor 99.8 3.3E-20 1.1E-24 154.7 9.0 110 222-336 19-180 (181)
211 2gf0_A GTP-binding protein DI- 99.8 8.6E-20 2.9E-24 154.4 11.5 118 222-340 6-172 (199)
212 3r7w_B Gtpase2, GTP-binding pr 99.8 2E-20 7E-25 167.0 7.9 152 11-170 1-175 (331)
213 3dpu_A RAB family protein; roc 99.8 4.8E-20 1.6E-24 179.3 11.1 164 6-172 38-211 (535)
214 2cxx_A Probable GTP-binding pr 99.8 5.2E-20 1.8E-24 154.5 9.5 154 10-170 2-185 (190)
215 2ce2_X GTPase HRAS; signaling 99.8 2E-19 6.9E-24 147.1 12.8 115 224-339 3-165 (166)
216 3con_A GTPase NRAS; structural 99.8 2.4E-19 8.3E-24 150.5 13.6 118 222-340 19-184 (190)
217 1f6b_A SAR1; gtpases, N-termin 99.8 5.7E-20 2E-24 155.5 9.7 111 222-337 23-197 (198)
218 1m2o_B GTP-binding protein SAR 99.8 1.4E-19 4.7E-24 152.1 11.4 109 223-336 22-189 (190)
219 3gee_A MNME, tRNA modification 99.8 2.2E-19 7.5E-24 170.4 13.9 157 9-168 233-397 (476)
220 2x77_A ADP-ribosylation factor 99.8 1.3E-19 4.4E-24 152.1 10.5 114 222-340 20-185 (189)
221 2h57_A ADP-ribosylation factor 99.8 2.1E-19 7.2E-24 151.0 10.7 114 222-339 19-187 (190)
222 1moz_A ARL1, ADP-ribosylation 99.8 1.6E-19 5.5E-24 150.6 9.8 113 222-339 16-180 (183)
223 2f9l_A RAB11B, member RAS onco 99.8 3.9E-19 1.3E-23 150.5 12.2 118 223-340 4-169 (199)
224 2e87_A Hypothetical protein PH 99.8 2.4E-18 8.2E-23 158.8 16.9 160 7-168 165-335 (357)
225 2yc2_C IFT27, small RAB-relate 99.8 8.3E-20 2.8E-24 155.6 6.5 118 223-340 19-193 (208)
226 1oix_A RAS-related protein RAB 99.8 1.3E-18 4.4E-23 146.3 13.5 115 223-337 28-190 (191)
227 3qq5_A Small GTP-binding prote 99.8 2.3E-19 7.8E-24 167.5 7.9 158 7-170 32-197 (423)
228 1u0l_A Probable GTPase ENGC; p 99.8 4.1E-19 1.4E-23 159.7 9.1 156 24-246 32-191 (301)
229 2zej_A Dardarin, leucine-rich 99.8 3E-19 1E-23 149.3 7.2 118 224-341 2-180 (184)
230 3o47_A ADP-ribosylation factor 99.8 6.4E-19 2.2E-23 160.5 9.8 114 222-340 163-328 (329)
231 1nrj_B SR-beta, signal recogni 99.8 2.4E-19 8.1E-24 154.1 6.5 144 3-155 6-170 (218)
232 3th5_A RAS-related C3 botulinu 99.6 2.4E-20 8.1E-25 158.7 0.0 115 222-337 28-203 (204)
233 2wkq_A NPH1-1, RAS-related C3 99.8 3.9E-18 1.3E-22 156.1 14.5 117 223-340 154-331 (332)
234 2lkc_A Translation initiation 99.8 1.2E-18 4.1E-23 144.5 9.9 118 222-341 6-173 (178)
235 3lxw_A GTPase IMAP family memb 99.8 3.2E-18 1.1E-22 149.6 12.9 164 7-170 19-209 (247)
236 3llu_A RAS-related GTP-binding 99.8 9.1E-19 3.1E-23 147.9 8.0 113 222-338 18-196 (196)
237 3r7w_B Gtpase2, GTP-binding pr 99.8 3.5E-19 1.2E-23 159.0 5.6 109 226-340 1-175 (331)
238 3lxx_A GTPase IMAP family memb 99.8 4E-18 1.4E-22 148.6 11.8 162 7-170 27-215 (239)
239 2wji_A Ferrous iron transport 99.8 4.9E-18 1.7E-22 139.2 11.3 112 224-337 3-163 (165)
240 1xzp_A Probable tRNA modificat 99.8 1.1E-18 3.9E-23 165.6 8.5 153 9-168 243-404 (482)
241 2xtp_A GTPase IMAP family memb 99.8 3.1E-18 1.1E-22 151.3 10.6 167 7-173 20-212 (260)
242 2hjg_A GTP-binding protein ENG 99.7 1.7E-18 5.9E-23 164.0 8.7 158 8-169 174-349 (436)
243 2fh5_B SR-beta, signal recogni 99.7 3.3E-18 1.1E-22 146.5 9.1 85 223-310 6-92 (214)
244 3lvq_E ARF-GAP with SH3 domain 99.7 7.3E-18 2.5E-22 162.7 11.8 114 222-340 320-485 (497)
245 1lnz_A SPO0B-associated GTP-bi 99.7 8.1E-18 2.8E-22 153.1 11.2 158 11-172 160-333 (342)
246 3sjy_A Translation initiation 99.7 5.1E-17 1.8E-21 152.2 16.8 163 4-168 3-191 (403)
247 1svi_A GTP-binding protein YSX 99.7 3.5E-18 1.2E-22 144.0 7.2 113 223-338 22-194 (195)
248 4dcu_A GTP-binding protein ENG 99.7 8.7E-18 3E-22 160.1 9.7 159 7-169 193-369 (456)
249 3c5h_A Glucocorticoid receptor 99.7 1.4E-18 4.8E-23 152.8 3.2 117 222-338 17-254 (255)
250 3geh_A MNME, tRNA modification 99.7 3.3E-18 1.1E-22 161.8 5.4 154 9-170 224-385 (462)
251 1mky_A Probable GTP-binding pr 99.7 4.9E-17 1.7E-21 154.1 13.1 158 8-169 179-355 (439)
252 2gj8_A MNME, tRNA modification 99.7 3.4E-17 1.1E-21 135.2 10.3 114 223-339 3-166 (172)
253 3cb4_D GTP-binding protein LEP 99.7 6.8E-17 2.3E-21 157.0 13.8 157 9-168 4-181 (599)
254 3p26_A Elongation factor 1 alp 99.7 3.9E-17 1.3E-21 156.5 11.8 153 7-159 31-228 (483)
255 1wb1_A Translation elongation 99.7 6.4E-17 2.2E-21 154.5 12.6 161 5-168 15-188 (482)
256 2wjg_A FEOB, ferrous iron tran 99.7 1.2E-16 4.1E-21 133.7 11.9 118 222-341 5-171 (188)
257 2dyk_A GTP-binding protein; GT 99.7 2.2E-17 7.5E-22 134.5 7.2 110 225-337 2-160 (161)
258 3j2k_7 ERF3, eukaryotic polype 99.7 3.3E-16 1.1E-20 148.0 16.2 154 6-161 14-217 (439)
259 2ged_A SR-beta, signal recogni 99.7 3.9E-17 1.3E-21 137.3 8.9 117 7-130 46-173 (193)
260 3tr5_A RF-3, peptide chain rel 99.7 7.5E-17 2.6E-21 155.0 11.9 117 8-127 12-148 (528)
261 2ywe_A GTP-binding protein LEP 99.7 1.7E-16 5.7E-21 153.9 13.8 158 8-168 5-183 (600)
262 2qu8_A Putative nucleolar GTP- 99.7 6.1E-17 2.1E-21 140.0 9.2 116 222-340 27-206 (228)
263 1puj_A YLQF, conserved hypothe 99.7 4.1E-16 1.4E-20 138.4 14.6 173 63-285 4-177 (282)
264 3r7w_A Gtpase1, GTP-binding pr 99.7 8.8E-17 3E-21 145.1 10.2 113 223-339 2-181 (307)
265 3t5d_A Septin-7; GTP-binding p 99.7 1.1E-16 3.6E-21 142.3 10.5 157 8-167 7-202 (274)
266 3izy_P Translation initiation 99.7 4E-18 1.4E-22 163.1 -0.2 156 8-168 3-167 (537)
267 2qtf_A Protein HFLX, GTP-bindi 99.7 4E-16 1.4E-20 143.3 12.8 156 11-169 181-354 (364)
268 3a1s_A Iron(II) transport prot 99.7 2.7E-16 9.3E-21 138.1 11.1 114 223-338 4-166 (258)
269 1s0u_A EIF-2-gamma, translatio 99.7 2.3E-15 7.8E-20 141.3 17.8 161 7-168 6-197 (408)
270 2elf_A Protein translation elo 99.7 4.9E-16 1.7E-20 143.2 12.8 143 11-168 23-179 (370)
271 1zun_B Sulfate adenylate trans 99.7 5.8E-16 2E-20 146.4 13.6 151 7-159 22-214 (434)
272 2aka_B Dynamin-1; fusion prote 99.7 6.2E-17 2.1E-21 145.9 6.4 194 7-213 24-289 (299)
273 1d2e_A Elongation factor TU (E 99.7 3.6E-16 1.2E-20 146.1 11.6 157 8-167 2-193 (397)
274 1kk1_A EIF2gamma; initiation o 99.7 1.2E-15 4.2E-20 143.3 15.2 158 7-168 8-199 (410)
275 3pqc_A Probable GTP-binding pr 99.7 1.2E-16 4.1E-21 134.4 7.2 113 223-339 22-194 (195)
276 2c78_A Elongation factor TU-A; 99.6 3.7E-16 1.3E-20 146.6 10.8 146 7-155 9-180 (405)
277 3izq_1 HBS1P, elongation facto 99.6 5.9E-16 2E-20 151.5 12.3 153 7-159 165-362 (611)
278 3b1v_A Ferrous iron uptake tra 99.6 1.7E-16 5.9E-21 140.1 7.2 112 224-338 3-163 (272)
279 3h2y_A GTPase family protein; 99.6 1.7E-15 5.7E-20 139.7 13.8 176 68-306 56-254 (368)
280 1jny_A EF-1-alpha, elongation 99.6 2.9E-16 9.8E-21 148.5 8.9 152 7-159 4-203 (435)
281 3iev_A GTP-binding protein ERA 99.6 4.8E-16 1.6E-20 140.3 9.5 120 222-342 8-185 (308)
282 1pui_A ENGB, probable GTP-bind 99.6 1.6E-15 5.4E-20 129.2 12.2 156 8-169 25-199 (210)
283 2yv5_A YJEQ protein; hydrolase 99.6 4.2E-15 1.4E-19 133.4 15.2 117 68-245 66-186 (302)
284 2qag_A Septin-2, protein NEDD5 99.6 3E-16 1E-20 144.4 7.8 157 9-169 37-233 (361)
285 3dpu_A RAB family protein; roc 99.6 1.6E-16 5.4E-21 154.5 6.2 121 222-342 39-211 (535)
286 1g7s_A Translation initiation 99.6 1.9E-15 6.7E-20 146.9 13.4 160 6-168 2-217 (594)
287 3iby_A Ferrous iron transport 99.6 1.1E-15 3.7E-20 134.0 10.4 110 225-336 2-164 (256)
288 3gee_A MNME, tRNA modification 99.6 5.4E-16 1.8E-20 147.2 9.0 115 223-338 232-397 (476)
289 4dhe_A Probable GTP-binding pr 99.6 2.3E-16 7.8E-21 135.8 5.0 118 223-340 28-212 (223)
290 1f60_A Elongation factor EEF1A 99.6 6.7E-16 2.3E-20 146.7 8.6 150 7-158 5-201 (458)
291 2cxx_A Probable GTP-binding pr 99.6 9.2E-17 3.1E-21 134.6 2.4 111 225-341 2-186 (190)
292 1r5b_A Eukaryotic peptide chai 99.6 4.2E-16 1.4E-20 148.4 6.9 154 7-160 41-243 (467)
293 1zo1_I IF2, translation initia 99.6 7.9E-17 2.7E-21 152.9 1.7 153 8-165 3-163 (501)
294 1wxq_A GTP-binding protein; st 99.6 2.5E-16 8.6E-21 146.3 4.9 83 10-94 1-114 (397)
295 3ec1_A YQEH GTPase; atnos1, at 99.6 3.7E-15 1.3E-19 137.5 12.6 177 68-307 58-256 (369)
296 3mca_A HBS1, elongation factor 99.6 2.4E-16 8.3E-21 153.8 4.5 150 7-157 175-371 (592)
297 1cip_A Protein (guanine nucleo 99.6 3.9E-15 1.3E-19 135.8 11.8 114 56-169 191-344 (353)
298 3i8s_A Ferrous iron transport 99.6 6.4E-16 2.2E-20 137.1 6.3 115 224-340 3-170 (274)
299 3avx_A Elongation factor TS, e 99.6 3.8E-15 1.3E-19 151.3 12.4 158 7-167 294-484 (1289)
300 2dy1_A Elongation factor G; tr 99.6 7.9E-15 2.7E-19 145.3 13.8 123 1-126 1-139 (665)
301 1udx_A The GTP-binding protein 99.6 1.9E-14 6.4E-19 133.9 15.0 158 11-171 159-327 (416)
302 1wf3_A GTP-binding protein; GT 99.6 1.1E-15 3.7E-20 137.1 6.4 118 223-341 6-175 (301)
303 3def_A T7I23.11 protein; chlor 99.6 5.4E-15 1.8E-19 130.4 10.8 118 7-126 34-164 (262)
304 2xtz_A Guanine nucleotide-bind 99.6 7.1E-15 2.4E-19 134.1 11.7 114 56-169 181-345 (354)
305 3cnl_A YLQF, putative uncharac 99.6 1.4E-15 4.9E-20 133.4 6.2 152 66-286 5-157 (262)
306 1dar_A EF-G, elongation factor 99.6 1.2E-14 4.2E-19 144.4 13.6 124 1-127 1-143 (691)
307 3ohm_A Guanine nucleotide-bind 99.6 9.5E-15 3.3E-19 131.3 11.2 117 54-170 163-319 (327)
308 3k53_A Ferrous iron transport 99.6 2.2E-14 7.4E-19 127.2 13.3 116 224-341 3-168 (271)
309 1h65_A Chloroplast outer envel 99.6 1.2E-14 4.2E-19 128.7 10.8 120 7-128 37-169 (270)
310 2h5e_A Peptide chain release f 99.6 3.9E-14 1.3E-18 136.3 14.5 117 8-127 12-148 (529)
311 4fid_A G protein alpha subunit 99.5 2E-14 7E-19 129.5 11.2 118 52-169 155-328 (340)
312 2xex_A Elongation factor G; GT 99.5 5.4E-14 1.9E-18 139.9 13.8 124 1-127 1-141 (693)
313 2qnr_A Septin-2, protein NEDD5 99.5 1.9E-14 6.5E-19 129.1 9.2 161 8-172 17-217 (301)
314 2j69_A Bacterial dynamin-like 99.5 1.1E-13 3.9E-18 137.6 15.4 109 59-169 175-325 (695)
315 2rdo_7 EF-G, elongation factor 99.5 3.2E-13 1.1E-17 134.4 17.1 118 7-127 8-148 (704)
316 1jwy_B Dynamin A GTPase domain 99.5 1.2E-13 4.2E-18 125.2 12.7 162 7-172 22-265 (315)
317 3qq5_A Small GTP-binding prote 99.5 4.1E-14 1.4E-18 132.0 9.2 116 223-340 33-197 (423)
318 3geh_A MNME, tRNA modification 99.5 1.8E-14 6.2E-19 136.2 6.1 115 223-340 223-385 (462)
319 2qag_C Septin-7; cell cycle, c 99.5 1.4E-13 4.9E-18 128.0 10.8 154 9-167 31-225 (418)
320 1xzp_A Probable tRNA modificat 99.5 7.4E-15 2.5E-19 139.5 2.2 112 224-338 243-404 (482)
321 3izy_P Translation initiation 99.5 9.8E-15 3.4E-19 139.7 2.2 114 224-338 4-167 (537)
322 2xtp_A GTPase IMAP family memb 99.4 8.8E-14 3E-18 122.6 7.3 117 223-341 21-210 (260)
323 2qpt_A EH domain-containing pr 99.4 1.3E-12 4.4E-17 126.5 15.9 122 7-130 63-235 (550)
324 1nrj_B SR-beta, signal recogni 99.4 3E-14 1E-18 122.0 3.8 84 222-314 10-101 (218)
325 2x2e_A Dynamin-1; nitration, h 99.4 2.1E-14 7.1E-19 132.2 2.0 157 7-165 29-254 (353)
326 3vqt_A RF-3, peptide chain rel 99.4 1.7E-12 5.7E-17 125.5 13.2 116 9-127 31-166 (548)
327 1ega_A Protein (GTP-binding pr 99.4 4.2E-13 1.5E-17 120.4 8.4 117 223-341 7-177 (301)
328 1jal_A YCHF protein; nucleotid 99.4 4.6E-12 1.6E-16 115.2 15.1 83 9-93 2-108 (363)
329 2e87_A Hypothetical protein PH 99.4 5.4E-13 1.9E-17 122.9 9.2 115 223-339 166-336 (357)
330 3cb4_D GTP-binding protein LEP 99.4 2.6E-13 9E-18 131.8 7.3 117 224-340 4-183 (599)
331 3t34_A Dynamin-related protein 99.4 3.5E-13 1.2E-17 124.4 7.9 153 8-162 33-254 (360)
332 3p32_A Probable GTPase RV1496/ 99.4 9.1E-13 3.1E-17 121.2 9.8 103 57-169 171-284 (355)
333 3lxw_A GTPase IMAP family memb 99.4 4.2E-13 1.4E-17 117.0 7.2 87 222-308 19-117 (247)
334 3sjy_A Translation initiation 99.4 2.4E-12 8.2E-17 120.5 11.7 117 222-339 6-192 (403)
335 2ywe_A GTP-binding protein LEP 99.4 4.4E-13 1.5E-17 130.0 6.7 117 224-340 6-185 (600)
336 3p26_A Elongation factor 1 alp 99.4 3.2E-13 1.1E-17 129.4 5.6 89 223-311 32-149 (483)
337 2qag_A Septin-2, protein NEDD5 99.4 2.8E-13 9.5E-18 124.6 4.9 121 223-344 36-238 (361)
338 2www_A Methylmalonic aciduria 99.4 7.6E-13 2.6E-17 121.2 7.7 103 56-168 165-278 (349)
339 3lxx_A GTPase IMAP family memb 99.4 7.4E-13 2.5E-17 115.1 6.8 88 223-310 28-126 (239)
340 1s0u_A EIF-2-gamma, translatio 99.4 3.4E-12 1.2E-16 119.7 11.4 117 223-339 7-198 (408)
341 1pui_A ENGB, probable GTP-bind 99.3 5.4E-13 1.8E-17 113.4 5.4 114 223-339 25-199 (210)
342 1lnz_A SPO0B-associated GTP-bi 99.3 1E-12 3.6E-17 119.4 7.6 114 225-341 159-332 (342)
343 1zo1_I IF2, translation initia 99.3 2.9E-13 9.8E-18 128.6 2.1 111 223-335 3-163 (501)
344 3izq_1 HBS1P, elongation facto 99.3 8E-13 2.7E-17 129.4 4.8 88 222-309 165-281 (611)
345 1kk1_A EIF2gamma; initiation o 99.3 9.1E-12 3.1E-16 116.9 11.6 118 222-339 8-200 (410)
346 1wb1_A Translation elongation 99.3 2.9E-12 9.8E-17 122.3 8.0 113 222-338 17-188 (482)
347 1zcb_A G alpha I/13; GTP-bindi 99.3 1.1E-11 3.6E-16 113.5 11.4 114 56-169 199-353 (362)
348 3t5d_A Septin-7; GTP-binding p 99.3 1.5E-12 5.3E-17 115.4 5.7 116 223-338 7-203 (274)
349 1g7s_A Translation initiation 99.3 2.6E-12 8.8E-17 125.1 7.2 92 223-314 4-114 (594)
350 1azs_C GS-alpha; complex (lyas 99.3 1.1E-11 3.6E-16 114.4 10.7 114 56-169 215-385 (402)
351 2wsm_A Hydrogenase expression/ 99.3 7.1E-12 2.4E-16 107.4 9.0 151 8-168 29-213 (221)
352 2ged_A SR-beta, signal recogni 99.3 1.2E-12 3.9E-17 109.8 3.9 83 223-314 47-137 (193)
353 1n0u_A EF-2, elongation factor 99.3 4.3E-12 1.5E-16 128.8 8.6 116 8-126 18-163 (842)
354 3tr5_A RF-3, peptide chain rel 99.3 1.9E-12 6.5E-17 124.5 5.3 91 224-314 13-123 (528)
355 2p67_A LAO/AO transport system 99.3 8E-12 2.7E-16 114.2 9.2 102 57-168 148-260 (341)
356 3zvr_A Dynamin-1; hydrolase, D 99.3 7.9E-12 2.7E-16 123.6 9.7 194 7-214 49-315 (772)
357 4a9a_A Ribosome-interacting GT 99.3 5.4E-12 1.9E-16 115.4 7.7 114 9-126 72-195 (376)
358 3j2k_7 ERF3, eukaryotic polype 99.3 9.5E-12 3.2E-16 117.5 9.2 88 223-310 16-132 (439)
359 2aka_B Dynamin-1; fusion prote 99.3 3.7E-12 1.3E-16 114.5 6.1 114 223-336 25-250 (299)
360 1jny_A EF-1-alpha, elongation 99.2 1.9E-12 6.4E-17 122.4 3.4 90 223-313 5-123 (435)
361 1d2e_A Elongation factor TU (E 99.2 5E-12 1.7E-16 118.0 5.9 89 223-311 2-104 (397)
362 3ohm_A Guanine nucleotide-bind 99.2 1.1E-11 3.8E-16 111.4 7.2 96 242-341 133-320 (327)
363 2c78_A Elongation factor TU-A; 99.2 3.7E-12 1.3E-16 119.4 4.0 92 222-313 9-115 (405)
364 1yrb_A ATP(GTP)binding protein 99.2 3.9E-11 1.3E-15 105.6 10.4 112 58-171 109-259 (262)
365 2dby_A GTP-binding protein; GD 99.2 5.1E-11 1.7E-15 109.1 11.2 82 10-93 2-111 (368)
366 2qnr_A Septin-2, protein NEDD5 99.2 4.3E-12 1.5E-16 113.8 3.8 121 223-345 17-220 (301)
367 2hf9_A Probable hydrogenase ni 99.2 5.9E-11 2E-15 102.0 10.3 151 8-168 37-223 (226)
368 2qtf_A Protein HFLX, GTP-bindi 99.2 3.2E-11 1.1E-15 110.7 8.7 111 225-340 179-355 (364)
369 3j25_A Tetracycline resistance 99.2 6.1E-12 2.1E-16 124.1 3.6 114 11-127 4-133 (638)
370 1cip_A Protein (guanine nucleo 99.2 2.8E-11 9.5E-16 110.4 7.5 52 254-309 178-229 (353)
371 1t9h_A YLOQ, probable GTPase E 99.2 9.4E-12 3.2E-16 110.9 4.0 112 74-246 79-195 (307)
372 1zun_B Sulfate adenylate trans 99.2 1.2E-11 4.2E-16 116.8 4.7 88 223-310 23-141 (434)
373 4fn5_A EF-G 1, elongation fact 99.2 1.9E-10 6.5E-15 115.0 13.5 114 10-126 14-150 (709)
374 1vpl_A ABC transporter, ATP-bi 99.2 2.1E-11 7.3E-16 106.3 5.8 52 149-205 143-194 (256)
375 3tui_C Methionine import ATP-b 99.2 3.5E-11 1.2E-15 109.3 7.3 53 149-206 160-212 (366)
376 3def_A T7I23.11 protein; chlor 99.2 2.9E-11 9.8E-16 106.4 6.3 88 222-310 34-130 (262)
377 3tif_A Uncharacterized ABC tra 99.2 3.5E-11 1.2E-15 103.8 6.7 53 149-206 142-194 (235)
378 3rlf_A Maltose/maltodextrin im 99.1 4.3E-11 1.5E-15 109.5 6.7 54 148-206 129-182 (381)
379 4g1u_C Hemin import ATP-bindin 99.1 4E-11 1.4E-15 105.3 6.3 52 150-206 139-196 (266)
380 1z47_A CYSA, putative ABC-tran 99.1 6.1E-11 2.1E-15 107.8 7.1 53 149-206 142-194 (355)
381 2pcj_A ABC transporter, lipopr 99.1 4.2E-11 1.4E-15 102.5 5.6 54 148-206 136-189 (224)
382 1f60_A Elongation factor EEF1A 99.1 1.1E-11 3.7E-16 117.7 2.2 87 223-309 6-121 (458)
383 3gfo_A Cobalt import ATP-bindi 99.1 9.3E-11 3.2E-15 103.2 8.0 52 148-204 139-190 (275)
384 3mca_A HBS1, elongation factor 99.1 1.5E-11 5.2E-16 120.0 2.8 89 221-309 174-291 (592)
385 3avx_A Elongation factor TS, e 99.1 2.2E-11 7.4E-16 124.1 3.9 91 222-312 294-398 (1289)
386 1h65_A Chloroplast outer envel 99.1 1.5E-10 5.2E-15 102.3 9.0 86 222-308 37-131 (270)
387 2it1_A 362AA long hypothetical 99.1 6.4E-11 2.2E-15 108.0 6.6 54 148-206 129-182 (362)
388 4fid_A G protein alpha subunit 99.1 3.4E-11 1.2E-15 108.6 4.6 68 243-314 128-212 (340)
389 2elf_A Protein translation elo 99.1 5.7E-11 1.9E-15 109.4 6.2 103 226-339 23-180 (370)
390 2rcn_A Probable GTPase ENGC; Y 99.1 3E-10 1E-14 103.1 10.8 108 78-247 127-238 (358)
391 2onk_A Molybdate/tungstate ABC 99.1 1.1E-10 3.6E-15 100.9 6.7 52 149-205 123-174 (240)
392 1r5b_A Eukaryotic peptide chai 99.1 5.5E-11 1.9E-15 113.1 5.2 88 222-309 41-157 (467)
393 1g6h_A High-affinity branched- 99.1 1.1E-10 3.7E-15 102.1 6.6 54 148-206 149-202 (257)
394 2olj_A Amino acid ABC transpor 99.1 2.5E-10 8.5E-15 99.9 8.7 53 149-206 156-208 (263)
395 3fvq_A Fe(3+) IONS import ATP- 99.1 6E-11 2E-15 107.8 4.8 53 149-206 135-187 (359)
396 1sgw_A Putative ABC transporte 99.1 1.9E-10 6.6E-15 97.3 7.4 53 148-205 129-181 (214)
397 2xtz_A Guanine nucleotide-bind 99.1 7.7E-11 2.6E-15 107.4 5.2 44 271-314 181-234 (354)
398 1zcb_A G alpha I/13; GTP-bindi 99.1 1.7E-10 5.7E-15 105.6 7.3 51 254-308 186-236 (362)
399 2yyz_A Sugar ABC transporter, 99.1 1.3E-10 4.5E-15 105.8 6.4 53 149-206 130-182 (359)
400 1g29_1 MALK, maltose transport 99.1 9.6E-11 3.3E-15 107.4 5.6 53 149-206 136-188 (372)
401 2qm8_A GTPase/ATPase; G protei 99.1 6.5E-10 2.2E-14 101.1 10.8 103 56-168 146-260 (337)
402 1v43_A Sugar-binding transport 99.1 1.7E-10 5.8E-15 105.6 6.5 53 149-206 138-190 (372)
403 2d2e_A SUFC protein; ABC-ATPas 99.0 3.2E-10 1.1E-14 98.7 6.9 50 150-204 140-190 (250)
404 3d31_A Sulfate/molybdate ABC t 99.0 2E-10 6.7E-15 104.3 5.2 53 149-206 124-176 (348)
405 1ji0_A ABC transporter; ATP bi 99.0 3.4E-10 1.2E-14 97.9 6.5 51 150-205 137-187 (240)
406 1oxx_K GLCV, glucose, ABC tran 99.0 1.9E-10 6.6E-15 104.7 5.1 53 149-206 137-189 (353)
407 1azs_C GS-alpha; complex (lyas 99.0 3.9E-10 1.3E-14 104.0 6.9 56 255-314 203-268 (402)
408 1u0l_A Probable GTPase ENGC; p 99.0 4.4E-11 1.5E-15 107.3 0.6 92 239-336 32-170 (301)
409 1b0u_A Histidine permease; ABC 99.0 3.7E-10 1.3E-14 98.9 6.4 54 148-206 149-202 (262)
410 2ohf_A Protein OLA1, GTP-bindi 99.0 3.2E-10 1.1E-14 104.2 5.6 88 8-97 21-132 (396)
411 2qag_C Septin-7; cell cycle, c 99.0 5.6E-10 1.9E-14 103.9 7.1 117 223-339 30-227 (418)
412 2h5e_A Peptide chain release f 99.0 2E-10 6.7E-15 110.6 4.2 88 224-311 13-120 (529)
413 2nq2_C Hypothetical ABC transp 99.0 1.2E-09 4.2E-14 95.0 8.7 53 149-206 125-177 (253)
414 2pjz_A Hypothetical protein ST 99.0 3E-10 1E-14 99.3 4.6 50 149-203 125-174 (263)
415 3nh6_A ATP-binding cassette SU 99.0 5.1E-11 1.7E-15 106.3 -0.6 51 149-204 187-237 (306)
416 2yz2_A Putative ABC transporte 99.0 3.1E-10 1E-14 99.7 4.4 54 148-206 134-187 (266)
417 2ihy_A ABC transporter, ATP-bi 99.0 2.8E-11 9.6E-16 106.9 -2.4 54 148-206 157-210 (279)
418 2qi9_C Vitamin B12 import ATP- 98.9 4.3E-10 1.5E-14 97.6 4.4 52 149-205 123-181 (249)
419 2dy1_A Elongation factor G; tr 98.9 8.4E-10 2.9E-14 109.4 6.5 91 223-313 8-114 (665)
420 2zu0_C Probable ATP-dependent 98.9 9.5E-10 3.3E-14 96.6 5.9 47 152-203 164-210 (267)
421 3t34_A Dynamin-related protein 98.9 3.5E-10 1.2E-14 104.2 2.8 113 225-337 35-259 (360)
422 2x2e_A Dynamin-1; nitration, h 98.9 4.5E-10 1.5E-14 103.2 3.2 28 223-250 30-57 (353)
423 2ff7_A Alpha-hemolysin translo 98.9 1.3E-09 4.4E-14 94.6 5.8 49 150-203 143-191 (247)
424 1mv5_A LMRA, multidrug resista 98.9 1.3E-09 4.5E-14 94.4 5.2 50 150-204 137-186 (243)
425 2ohf_A Protein OLA1, GTP-bindi 98.9 2.1E-09 7.3E-14 98.7 6.7 90 223-314 21-134 (396)
426 2hf9_A Probable hydrogenase ni 98.9 4E-10 1.4E-14 96.8 1.6 39 223-261 37-75 (226)
427 2ixe_A Antigen peptide transpo 98.9 7.4E-10 2.5E-14 97.5 2.9 52 148-204 152-203 (271)
428 1udx_A The GTP-binding protein 98.9 6.3E-09 2.2E-13 96.7 9.3 114 225-342 158-328 (416)
429 1jwy_B Dynamin A GTPase domain 98.9 4.5E-09 1.5E-13 95.0 8.0 27 223-249 23-49 (315)
430 2wsm_A Hydrogenase expression/ 98.8 3E-09 1E-13 90.8 6.1 113 224-340 30-215 (221)
431 2j69_A Bacterial dynamin-like 98.8 3.7E-09 1.3E-13 105.2 7.4 41 274-314 175-218 (695)
432 1n0u_A EF-2, elongation factor 98.8 4.1E-09 1.4E-13 107.1 7.2 92 223-314 18-139 (842)
433 1wxq_A GTP-binding protein; st 98.8 6.5E-09 2.2E-13 96.4 7.1 83 225-309 1-114 (397)
434 2cbz_A Multidrug resistance-as 98.8 4.1E-09 1.4E-13 90.8 5.2 48 149-201 124-171 (237)
435 1jal_A YCHF protein; nucleotid 98.8 5.1E-09 1.8E-13 95.2 5.6 82 225-308 3-108 (363)
436 3b5x_A Lipid A export ATP-bind 98.8 3.4E-09 1.2E-13 103.8 4.2 49 150-203 478-526 (582)
437 2ghi_A Transport protein; mult 98.7 6.8E-10 2.3E-14 97.1 -1.2 49 150-203 153-201 (260)
438 3gd7_A Fusion complex of cysti 98.7 6.9E-10 2.4E-14 102.2 -1.6 47 152-203 155-201 (390)
439 3h2y_A GTPase family protein; 98.7 2E-08 6.7E-13 92.4 7.4 125 9-139 160-299 (368)
440 3p32_A Probable GTPase RV1496/ 98.7 2.3E-08 7.7E-13 91.8 7.5 65 272-339 171-284 (355)
441 3ec1_A YQEH GTPase; atnos1, at 98.7 2E-08 6.9E-13 92.4 7.2 118 9-132 162-293 (369)
442 2pze_A Cystic fibrosis transme 98.7 2E-08 7E-13 86.0 6.4 45 150-199 128-172 (229)
443 1dar_A EF-G, elongation factor 98.7 8.7E-09 3E-13 102.5 4.1 92 223-314 11-118 (691)
444 2qag_B Septin-6, protein NEDD5 98.7 9.9E-08 3.4E-12 88.4 10.3 137 10-150 43-217 (427)
445 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 2.5E-08 8.7E-13 91.8 6.1 84 9-93 20-127 (392)
446 2xex_A Elongation factor G; GT 98.6 1E-08 3.5E-13 102.0 3.8 92 223-314 9-116 (693)
447 3qf4_A ABC transporter, ATP-bi 98.6 1.4E-08 4.7E-13 99.4 4.4 53 146-203 473-525 (587)
448 2rdo_7 EF-G, elongation factor 98.6 2.9E-08 1E-12 98.8 6.7 92 223-314 9-123 (704)
449 4a9a_A Ribosome-interacting GT 98.6 6.8E-08 2.3E-12 88.4 7.8 87 223-311 71-164 (376)
450 3bk7_A ABC transporter ATP-bin 98.6 3.3E-08 1.1E-12 96.5 5.9 53 148-205 467-519 (607)
451 3ozx_A RNAse L inhibitor; ATP 98.6 3.1E-08 1.1E-12 95.4 5.4 53 149-206 382-434 (538)
452 3qf4_B Uncharacterized ABC tra 98.6 5.8E-09 2E-13 102.4 -0.3 49 151-204 490-538 (598)
453 3j16_B RLI1P; ribosome recycli 98.6 3.7E-08 1.3E-12 96.0 5.3 53 147-204 216-268 (608)
454 4a82_A Cystic fibrosis transme 98.6 1.5E-09 5.2E-14 106.1 -4.6 49 150-203 475-523 (578)
455 3b60_A Lipid A export ATP-bind 98.6 2.9E-09 9.9E-14 104.3 -2.7 50 150-204 478-527 (582)
456 3l82_B F-box only protein 4; T 98.6 8.1E-08 2.8E-12 79.2 6.2 104 65-169 109-223 (227)
457 1yqt_A RNAse L inhibitor; ATP- 98.6 4.1E-08 1.4E-12 94.8 5.1 52 149-205 398-449 (538)
458 2qpt_A EH domain-containing pr 98.6 5.3E-08 1.8E-12 94.2 5.8 89 223-311 64-203 (550)
459 2yl4_A ATP-binding cassette SU 98.6 3.5E-08 1.2E-12 96.9 4.6 49 151-204 482-530 (595)
460 3sop_A Neuronal-specific septi 98.5 3.1E-07 1.1E-11 80.6 10.0 117 9-129 2-156 (270)
461 2bbs_A Cystic fibrosis transme 98.5 4E-08 1.4E-12 87.0 3.8 45 150-199 157-201 (290)
462 4f4c_A Multidrug resistance pr 98.5 8.4E-08 2.9E-12 102.2 6.5 51 149-204 551-601 (1321)
463 3ozx_A RNAse L inhibitor; ATP 98.5 9E-09 3.1E-13 99.2 -0.9 50 149-203 135-184 (538)
464 2www_A Methylmalonic aciduria 98.5 2.1E-08 7.1E-13 91.7 1.5 64 272-338 166-278 (349)
465 4f4c_A Multidrug resistance pr 98.5 2E-08 6.8E-13 106.9 1.5 47 151-202 1216-1262(1321)
466 1tq4_A IIGP1, interferon-induc 98.5 1.4E-06 4.7E-11 80.8 13.0 156 9-171 69-255 (413)
467 3j16_B RLI1P; ribosome recycli 98.5 1.3E-07 4.6E-12 92.1 6.1 53 148-205 463-515 (608)
468 2p67_A LAO/AO transport system 98.5 1.1E-07 3.9E-12 86.5 5.2 64 272-338 148-260 (341)
469 1puj_A YLQF, conserved hypothe 98.4 2E-07 6.7E-12 82.4 5.4 60 7-70 118-177 (282)
470 2dby_A GTP-binding protein; GD 98.4 2.3E-07 7.8E-12 84.9 5.8 78 225-308 2-111 (368)
471 3vqt_A RF-3, peptide chain rel 98.4 2.1E-07 7.2E-12 89.9 5.8 91 224-314 31-141 (548)
472 3bk7_A ABC transporter ATP-bin 98.4 1.8E-07 6.3E-12 91.3 4.8 51 149-204 225-275 (607)
473 2j37_W Signal recognition part 98.4 4.4E-07 1.5E-11 86.2 7.3 114 8-127 100-254 (504)
474 3ux8_A Excinuclease ABC, A sub 98.4 6.3E-07 2.1E-11 89.3 8.5 52 148-204 198-251 (670)
475 1yqt_A RNAse L inhibitor; ATP- 98.4 1.4E-07 4.9E-12 91.0 3.3 50 150-204 156-205 (538)
476 3l2o_B F-box only protein 4; s 98.4 7E-07 2.4E-11 77.4 7.1 104 65-169 194-308 (312)
477 3g5u_A MCG1178, multidrug resi 98.3 1.7E-07 5.7E-12 99.6 2.5 50 150-204 524-573 (1284)
478 3cnl_A YLQF, putative uncharac 98.3 2.4E-07 8.2E-12 80.9 3.1 57 10-70 100-156 (262)
479 3l82_B F-box only protein 4; T 98.3 1.9E-07 6.6E-12 77.0 1.4 60 281-340 110-224 (227)
480 1ye8_A Protein THEP1, hypothet 98.3 1.4E-06 4.7E-11 71.4 6.5 45 153-202 77-128 (178)
481 3g5u_A MCG1178, multidrug resi 98.2 2.1E-07 7.1E-12 98.9 1.6 48 151-203 1170-1217(1284)
482 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 1.3E-06 4.5E-11 80.4 6.0 85 223-308 19-127 (392)
483 2iw3_A Elongation factor 3A; a 98.2 2.5E-06 8.6E-11 86.8 7.3 49 149-202 545-593 (986)
484 3zvr_A Dynamin-1; hydrolase, D 98.1 1.6E-06 5.6E-11 85.9 4.3 26 224-249 51-76 (772)
485 3j25_A Tetracycline resistance 98.1 3.4E-07 1.2E-11 90.3 -0.8 88 225-312 3-106 (638)
486 3l2o_B F-box only protein 4; s 98.0 8.7E-07 3E-11 76.8 1.2 61 280-340 194-309 (312)
487 1yrb_A ATP(GTP)binding protein 98.0 7.5E-06 2.6E-10 71.5 6.3 24 222-245 12-35 (262)
488 3dm5_A SRP54, signal recogniti 98.0 2E-05 6.9E-10 73.4 9.4 107 58-173 183-299 (443)
489 4gp7_A Metallophosphoesterase; 98.0 2.6E-06 9.1E-11 69.3 3.1 37 152-193 83-119 (171)
490 1f5n_A Interferon-induced guan 97.9 9.1E-06 3.1E-10 78.6 6.3 65 6-70 35-103 (592)
491 2iw3_A Elongation factor 3A; a 97.9 5.1E-06 1.7E-10 84.6 4.4 48 150-202 899-946 (986)
492 4fn5_A EF-G 1, elongation fact 97.8 3.3E-05 1.1E-09 77.2 8.2 91 224-314 13-126 (709)
493 2qm8_A GTPase/ATPase; G protei 97.7 1.2E-05 4.2E-10 72.8 2.4 22 224-245 55-76 (337)
494 2v3c_C SRP54, signal recogniti 97.7 0.00018 6.2E-09 67.2 10.1 86 56-149 179-272 (432)
495 2npi_A Protein CLP1; CLP1-PCF1 97.7 5.1E-06 1.7E-10 78.4 -0.6 45 152-202 235-286 (460)
496 4aby_A DNA repair protein RECN 97.6 0.00034 1.2E-08 65.3 11.6 47 153-204 296-344 (415)
497 2yv5_A YJEQ protein; hydrolase 97.6 4.6E-05 1.6E-09 67.9 4.7 53 283-335 66-165 (302)
498 3szr_A Interferon-induced GTP- 97.6 0.00016 5.6E-09 70.8 8.6 23 10-32 46-68 (608)
499 3kl4_A SRP54, signal recogniti 97.5 0.00038 1.3E-08 64.8 10.1 91 57-156 179-277 (433)
500 3b9q_A Chloroplast SRP recepto 97.5 7.4E-05 2.5E-09 66.5 4.9 30 158-193 207-238 (302)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=7.5e-40 Score=310.65 Aligned_cols=277 Identities=18% Similarity=0.175 Sum_probs=187.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc--------ccccchhhhhc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE--------KFGGLRDGYYI 80 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~--------~~~~~~~~~~~ 80 (385)
.++|+|+|++|||||||+|+|++. ....+.+++|+|++.......+.+..+.+|||||+. .+......++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 469999999999999999996654 445678899999999999988888899999999985 34445566788
Q ss_pred cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
.+|++|+|+|+.+..++. ..++..+.+ ..++|+++|+||+|+..... ...+++......++++||++|.|+.+++
T Consensus 82 ~ad~il~vvD~~~~~~~~--d~~~~~~l~-~~~~pvilv~NK~D~~~~~~--~~~~~~~lg~~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAA--DEEVAKILY-RTKKPVVLAVNKLDNTEMRA--NIYDFYSLGFGEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp HCSEEEEEEETTTCSCHH--HHHHHHHHT-TCCSCEEEEEECCCC-------CCCSSGGGSSCCCEECBTTTTBTHHHHH
T ss_pred hCCEEEEEEeCCCCCCHH--HHHHHHHHH-HcCCCEEEEEECccCccchh--hHHHHHHcCCCCeEEEeCcCCCChHHHH
Confidence 999999999998876543 234444333 25889999999999865322 1122333333478999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHH
Q psy125 161 LWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTF 240 (385)
Q Consensus 161 ~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~ 240 (385)
..+.+.+...+.. ......+|++++|.+|||||||
T Consensus 157 ~~i~~~l~~~~~~---------------------------------------------~~~~~~~ki~lvG~~nvGKSSL 191 (436)
T 2hjg_A 157 DAVAEHFKNIPET---------------------------------------------KYNEEVIQFCLIGRPNVGKSSL 191 (436)
T ss_dssp HHHHHTGGGCCSS---------------------------------------------CCCTTCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCccccc---------------------------------------------cccccCcEEEEEcCCCCCHHHH
Confidence 9998876432100 0011348999999999999999
Q ss_pred HHHHhcCccccccccceeeEEEEE--EEEeCCeeEEEEEeeCCCccc----------cCcccc-cccccCcEEEEEEeCC
Q psy125 241 VKRHLTGEFEKKYVATLGVEVHPL--VFHTNRGAIRFNVWDTAGQEK----------FGGLRD-GYYIQGQCAIIMFDVT 307 (385)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~-~~~~~~~~~ilv~d~~ 307 (385)
+++++...+. ...+..|++.... .+..++ ..+.||||||+.+ |..++. .+++.+|++|+|||++
T Consensus 192 in~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~ 268 (436)
T 2hjg_A 192 VNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGE 268 (436)
T ss_dssp HHHHHTSTTE-EEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred HHHHhCCCce-eecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCC
Confidence 9999876542 2233445555543 333444 4589999999843 333333 3788999999999999
Q ss_pred Chhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125 308 SRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLARKLI 338 (385)
Q Consensus 308 ~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~ 338 (385)
++.++++ |++|||++|.||+++|..+.+.+.
T Consensus 269 ~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 269 EGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp TCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence 9888776 689999999999999999998876
Q ss_pred c
Q psy125 339 G 339 (385)
Q Consensus 339 ~ 339 (385)
.
T Consensus 349 ~ 349 (436)
T 2hjg_A 349 N 349 (436)
T ss_dssp H
T ss_pred H
Confidence 5
No 2
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=6.3e-37 Score=290.81 Aligned_cols=282 Identities=17% Similarity=0.163 Sum_probs=186.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc---------ccchhhhhc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF---------GGLRDGYYI 80 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~---------~~~~~~~~~ 80 (385)
.+|+|+|++|||||||+|+|++.. ...+.+++|+|++.......+.+..+.+|||||+... ......+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~-~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKK-KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 489999999999999999977654 4456788899998887777667778999999997642 223456789
Q ss_pred cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHH-HHHHHhcCCeEEEEcCCCCCChHHH
Q psy125 81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS-IVFHRKKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (385)
++|++|+|+|+++..+.. ..++..+.+. .++|+++|+||+|+.... .... .+++......++++||++|.|+.++
T Consensus 81 ~ad~il~V~D~~~~~~~~--d~~i~~~l~~-~~~p~ilv~NK~D~~~~~-~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L 156 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKE--DESLADFLRK-STVDTILVANKAENLREF-EREVKPELYSLGFGEPIPVSAEHNINLDTM 156 (439)
T ss_dssp TCSEEEEEEETTTCCCHH--HHHHHHHHHH-HTCCEEEEEESCCSHHHH-HHHTHHHHGGGSSCSCEECBTTTTBSHHHH
T ss_pred hCCEEEEEEECCCCCCHH--HHHHHHHHHH-cCCCEEEEEeCCCCcccc-HHHHHHHHHhcCCCCEEEEeccCCCCHHHH
Confidence 999999999998765433 2233333222 478999999999986431 1222 3444433337899999999999999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHH
Q psy125 160 FLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTT 239 (385)
Q Consensus 160 ~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~ 239 (385)
+..+.+.+.....- ..+ + ......++++++|++||||||
T Consensus 157 ~~~i~~~l~~~~~~-------~~~---------------------------~-------~~~~~~~kvaivG~~gvGKST 195 (439)
T 1mky_A 157 LETIIKKLEEKGLD-------LES---------------------------K-------PEITDAIKVAIVGRPNVGKST 195 (439)
T ss_dssp HHHHHHHHHHTTCC-------SSS---------------------------C-------CCCCSCEEEEEECSTTSSHHH
T ss_pred HHHHHHhccccccc-------chh---------------------------c-------cccccCceEEEECCCCCCHHH
Confidence 99999887432100 000 0 001134899999999999999
Q ss_pred HHHHHhcCccccccccceeeEEEEE--EEEeCCeeEEEEEeeCCCccccCccc------------ccccccCcEEEEEEe
Q psy125 240 FVKRHLTGEFEKKYVATLGVEVHPL--VFHTNRGAIRFNVWDTAGQEKFGGLR------------DGYYIQGQCAIIMFD 305 (385)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~------------~~~~~~~~~~ilv~d 305 (385)
|++++++..+ ....+..|++.... .+.+++. .+.+|||||+.++.... ..+++.+|++++|+|
T Consensus 196 Lln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d 272 (439)
T 1mky_A 196 LFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLD 272 (439)
T ss_dssp HHHHHHTSTT-EEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHhCCcc-cccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEe
Confidence 9999886543 23445555665433 3445554 57899999986544332 135778999999999
Q ss_pred CCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 306 VTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 306 ~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
++++.++++ +++|||++|.||+++|..+++.
T Consensus 273 ~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 273 ATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp TTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 998766554 5789999999999999999987
Q ss_pred HhcC
Q psy125 337 LIGD 340 (385)
Q Consensus 337 i~~~ 340 (385)
+...
T Consensus 353 ~~~~ 356 (439)
T 1mky_A 353 YASY 356 (439)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7553
No 3
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=4.7e-38 Score=300.02 Aligned_cols=280 Identities=19% Similarity=0.182 Sum_probs=191.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCC--------ccccccchhhh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG--------QEKFGGLRDGY 78 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g--------~~~~~~~~~~~ 78 (385)
|+.++|+|+|++|||||||+|+|++.. ...+.+++|+|++.......+.+..+.+||||| ++.+......+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~-~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGER-ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEE-EC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC-CcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 556799999999999999999976654 446778899999999999998889999999999 44455566778
Q ss_pred hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125 79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (385)
+..+|++|+|+|..+... ....++..+... .++|+++|+||+|+.... ....+++......++.+||+++.|+.+
T Consensus 100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~--~~~~e~~~lg~~~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVT--AADEEVAKILYR-TKKPVVLAVNKLDNTEMR--ANIYDFYSLGFGEPYPISGTHGLGLGD 174 (456)
T ss_dssp HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT-CCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTTHHH
T ss_pred HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH-cCCCEEEEEECccchhhh--hhHHHHHHcCCCceEEeecccccchHH
Confidence 889999999999876433 233444444432 689999999999986432 122233444445778999999999999
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHH
Q psy125 159 PFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKT 238 (385)
Q Consensus 159 l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks 238 (385)
++..+...+...... ......++++++|.+|||||
T Consensus 175 L~~~i~~~l~~~~~~---------------------------------------------~~~~~~~ki~ivG~~~vGKS 209 (456)
T 4dcu_A 175 LLDAVAEHFKNIPET---------------------------------------------KYNEEVIQFCLIGRPNVGKS 209 (456)
T ss_dssp HHHHHHTTGGGSCSS---------------------------------------------CCCTTCEEEEEECSTTSSHH
T ss_pred HHHHHHhhccccccc---------------------------------------------ccccccceeEEecCCCCCHH
Confidence 999887765321000 00123589999999999999
Q ss_pred HHHHHHhcCccccccccceeeEEEE--EEEEeCCeeEEEEEeeCCC----------ccccCccccc-ccccCcEEEEEEe
Q psy125 239 TFVKRHLTGEFEKKYVATLGVEVHP--LVFHTNRGAIRFNVWDTAG----------QEKFGGLRDG-YYIQGQCAIIMFD 305 (385)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~-~~~~~~~~ilv~d 305 (385)
+|+++++.... ......+|++... ..+..++ ..+.|||||| +++|..++.. +++.+|++|+|+|
T Consensus 210 slin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD 286 (456)
T 4dcu_A 210 SLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLD 286 (456)
T ss_dssp HHHHHHHTSTT-EEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEe
Confidence 99999885532 2233444555543 3344444 3689999999 6667666654 7899999999999
Q ss_pred CCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 306 VTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 306 ~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
+++..+.++ |++|||++|.||+++|.++++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 366 (456)
T 4dcu_A 287 GEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA 366 (456)
T ss_dssp TTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHH
Confidence 998655444 7899999999999999999998
Q ss_pred HhcC
Q psy125 337 LIGD 340 (385)
Q Consensus 337 i~~~ 340 (385)
+...
T Consensus 367 ~~~~ 370 (456)
T 4dcu_A 367 SENH 370 (456)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7543
No 4
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.97 E-value=1.1e-29 Score=217.24 Aligned_cols=163 Identities=28% Similarity=0.553 Sum_probs=137.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
++.+||+|||.+|||||||+++|+.+.+...+.++.|.++.......+...+.+.+|||+|++++..++..+++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 56799999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|||++++.+|+++..|+..+... ..+.|++||+||+|+...+. ..+...++...+..++++||++|.|++++|..|
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 999999999999999999888763 46789999999999976543 456677888889999999999999999999999
Q ss_pred HHHHhc
Q psy125 164 ARKLIG 169 (385)
Q Consensus 164 ~~~l~~ 169 (385)
++.+..
T Consensus 171 ~~~i~~ 176 (216)
T 4dkx_A 171 AAALPG 176 (216)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 998754
No 5
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=5.4e-29 Score=215.15 Aligned_cols=208 Identities=88% Similarity=1.394 Sum_probs=181.2
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCc
Q psy125 4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ 83 (385)
Q Consensus 4 ~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d 83 (385)
....+.+||+++|.+|||||||+|+|+.+.+...+.++.|.++...........+.+.+|||||++.+...+..++.++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34467899999999999999999998888888888999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 84 CAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 84 ~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
++++|||++++.++..+..|+..+.....+.|+++|+||+|+.......+...+....+..++++||+++.|+++++.+|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 169 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 169 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999888777999999999999976554444455667778899999999999999999999
Q ss_pred HHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCC
Q psy125 164 ARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDD 211 (385)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~ 211 (385)
++.+...+.......+...+|....++.....+...+++.....++.+
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 217 (221)
T 3gj0_A 170 ARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDE 217 (221)
T ss_dssp HHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhccCCCCC
Confidence 999999999888888888888889999988888888777665544443
No 6
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=1.2e-28 Score=210.93 Aligned_cols=121 Identities=30% Similarity=0.595 Sum_probs=101.7
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
.+.+||+++|++|||||+|+++|+.+.|...|.+|+|.++..+.+.+++..+.+.||||+|+++|..+++.||++++++|
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
+|||++++.||++ |+|||||+|.||+++|..|
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 9999999999998 8999999999999999999
Q ss_pred HHHHhcCCC
Q psy125 334 ARKLIGDPN 342 (385)
Q Consensus 334 ~~~i~~~~~ 342 (385)
++.|....+
T Consensus 171 ~~~i~~~~~ 179 (216)
T 4dkx_A 171 AAALPGMES 179 (216)
T ss_dssp HHHC-----
T ss_pred HHHHHhhhc
Confidence 999976543
No 7
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=9.6e-26 Score=190.59 Aligned_cols=165 Identities=32% Similarity=0.618 Sum_probs=144.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
++.+||+|+|++|||||||+|+|+++.+...+.++.+.++.......+...+.+.+|||||++.+...+..+++++|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35699999999999999999999998888888899998888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+..... ..+...++...+..++++||+++.|+++++.+|
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999998888988877643 4789999999999965433 344566777778899999999999999999999
Q ss_pred HHHHhcCC
Q psy125 164 ARKLIGDP 171 (385)
Q Consensus 164 ~~~l~~~~ 171 (385)
.+.+...+
T Consensus 173 ~~~~~~~~ 180 (195)
T 1x3s_A 173 VEKIIQTP 180 (195)
T ss_dssp HHHHHTSG
T ss_pred HHHHHhhh
Confidence 99987653
No 8
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.4e-25 Score=185.69 Aligned_cols=163 Identities=31% Similarity=0.590 Sum_probs=141.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||.+.+...+..++.++|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 35699999999999999999999988888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
+|+|++++.++..+..|+..+.....+.|+++|+||+|+..... ......+....+.+++++||+++.|+++++..|.
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT 166 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999998889988887777899999999999876433 3445567777788999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 167 ~~~~~ 171 (181)
T 3tw8_B 167 ELVLR 171 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 9
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.94 E-value=2.2e-25 Score=183.90 Aligned_cols=163 Identities=31% Similarity=0.591 Sum_probs=142.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
.++.+||+++|++|||||||+|+|+++.+...+.++.+.++...........+.+.+|||||++.+...+..++.++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45679999999999999999999999888888888999888888888888899999999999999888889999999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
++|+|++++.++..+..|+..+... ..+.|+++|+||+|+..... ..+...+....+.+++++||+++.|+++++.+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999998888888887764 35789999999999865332 34555677778889999999999999999999
Q ss_pred HHHHHh
Q psy125 163 LARKLI 168 (385)
Q Consensus 163 i~~~l~ 168 (385)
|++.+.
T Consensus 163 i~~~~~ 168 (170)
T 1r2q_A 163 IAKKLP 168 (170)
T ss_dssp HHHTSC
T ss_pred HHHHHh
Confidence 988753
No 10
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.94 E-value=4.6e-25 Score=183.39 Aligned_cols=165 Identities=31% Similarity=0.666 Sum_probs=138.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
..+.++|+++|++|||||||+|+++++.+...+.++.|.+........+...+.+.+|||||++.+...+..++.++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 44679999999999999999999999888888888888888777788888889999999999998888888999999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcchhh-hHHHHHHHH-hcCCeEEEEcCCCCCChHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKV-KAKSIVFHR-KKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 158 (385)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+..... ..+...+.. ....+++++||+++.|+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999998888888876643 5789999999999864332 344455555 5667999999999999999
Q ss_pred HHHHHHHHHhcC
Q psy125 159 PFLWLARKLIGD 170 (385)
Q Consensus 159 l~~~i~~~l~~~ 170 (385)
++..|++.+...
T Consensus 164 l~~~l~~~~~~~ 175 (177)
T 1wms_A 164 AFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
No 11
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.94 E-value=6.2e-25 Score=182.81 Aligned_cols=162 Identities=30% Similarity=0.560 Sum_probs=141.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||++.+...+..++.++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 34699999999999999999999998888888888898888888888888999999999999998888899999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+...+. ..+...+....+.+++++||+++.|+++++.+|
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999998888888877643 5789999999999965332 345566777788899999999999999999999
Q ss_pred HHHHh
Q psy125 164 ARKLI 168 (385)
Q Consensus 164 ~~~l~ 168 (385)
++.+.
T Consensus 173 ~~~i~ 177 (179)
T 1z0f_A 173 AKKIY 177 (179)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98774
No 12
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.93 E-value=1.2e-24 Score=183.03 Aligned_cols=162 Identities=26% Similarity=0.547 Sum_probs=141.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+|+|++|||||||+|+|+++.+...+.++.|.++...........+.+.+|||||++.+...+..++.++|++++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 46899999999999999999999988888888888888887777788889999999999999998899999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...+....+.+++++||+++.|+++++.+|+
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999998888988877643 5789999999999865432 3445567777788999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 181 ~~i~~ 185 (189)
T 2gf9_A 181 DVICE 185 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 13
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.93 E-value=6e-26 Score=195.99 Aligned_cols=165 Identities=86% Similarity=1.369 Sum_probs=147.0
Q ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125 221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 300 (385)
Q Consensus 221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 300 (385)
....+||+++|.+|||||+|+++++.+.+...+.+++|+++....+.+++..+.+.||||||++++..++..+++++|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 34579999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhhhh---------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 301 IIMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 301 ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
|+|||++++.||++ |++|||++|.||+++|.+|++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 171 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999877 899999999999999999999
Q ss_pred HHhcCCCcccccCCCCCCCccccChhhhhHHHHHHHHhhccCCCCCCCCC
Q psy125 336 KLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 385 (385)
Q Consensus 336 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (385)
.+...+.......++..++...+.....+..++.+.+....+.|++|+++
T Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (221)
T 3gj0_A 172 KLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL 221 (221)
T ss_dssp HHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHTC---------
T ss_pred HHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhccCCCCCCCCC
Confidence 99999999888889999999999999999999999999999999988874
No 14
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.93 E-value=6.6e-25 Score=180.70 Aligned_cols=162 Identities=30% Similarity=0.607 Sum_probs=141.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+++|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||++.+......++.++|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 56899999999999999999999988888888888887777777778888999999999999988888999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
|+|++++.+++.+..|+..+.....+.|+++|+||+|+...+. ..+...+....+.+++++||+++.|+++++.+|.+
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 163 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999988889888877657899999999999865332 34455677777889999999999999999999998
Q ss_pred HHhc
Q psy125 166 KLIG 169 (385)
Q Consensus 166 ~l~~ 169 (385)
.+..
T Consensus 164 ~~~~ 167 (168)
T 1z2a_A 164 KHLQ 167 (168)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8753
No 15
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=3.8e-25 Score=182.43 Aligned_cols=161 Identities=30% Similarity=0.590 Sum_probs=139.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
++.+||+++|++|||||||+|+|+++.+...+.++.+.++...........+.+.+|||||++.+...+..+++++|+++
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 35789999999999999999999998888888899998888888888888899999999999998888899999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcch---h-h-hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR---K-V-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~---~-~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+... . . ......+....+.+++++||+++.|+++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999988888888877643 57899999999998653 1 1 234455666778899999999999999999
Q ss_pred HHHHHHH
Q psy125 161 LWLARKL 167 (385)
Q Consensus 161 ~~i~~~l 167 (385)
.+|.+.+
T Consensus 161 ~~l~~~i 167 (170)
T 1ek0_A 161 LGIGEKI 167 (170)
T ss_dssp HHHHTTS
T ss_pred HHHHHHH
Confidence 9988765
No 16
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.93 E-value=8.7e-25 Score=184.25 Aligned_cols=163 Identities=29% Similarity=0.561 Sum_probs=137.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+|+|++|||||||+++|+++.+.....++.+.++.......+...+.+.+|||||++.+...+..++.++|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999998888777788888887777788888899999999999999988999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|+|++++.+++.+..|+..+... ..+.|+++|+||+|+...+. ..+...++...+..++++||+++.|+++++.+|
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 178 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 178 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999988898887764 35789999999999965332 344556777778899999999999999999999
Q ss_pred HHHHhc
Q psy125 164 ARKLIG 169 (385)
Q Consensus 164 ~~~l~~ 169 (385)
++.+..
T Consensus 179 ~~~i~~ 184 (191)
T 2a5j_A 179 AKEIYR 184 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988753
No 17
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.93 E-value=3e-25 Score=190.53 Aligned_cols=165 Identities=20% Similarity=0.370 Sum_probs=138.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
.++.+||+|+|++|||||||+++|+++.+...+.++.+.++. .....+...+.+.+|||+|++.+..++..++.++|++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 356799999999999999999999999988888888887763 4456677789999999999999999999999999999
Q ss_pred EEEEeCCChhhhhc-HHHHHHHHHHhcCCCCEEEEEeCCCCcch--------------hhhHHHHHHHHhcCC-eEEEEc
Q psy125 86 IIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIKDR--------------KVKAKSIVFHRKKNL-QYYDIS 149 (385)
Q Consensus 86 llV~d~~~~~~~~~-~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S 149 (385)
|+|||++++.++.. +..|+..+.....+.|+++|+||+|+... ....+...++...+. .++++|
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 182 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS 182 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence 99999999999988 67898888877778999999999998652 223455667777788 999999
Q ss_pred CCCCCC-hHHHHHHHHHHHhcCC
Q psy125 150 AKSNYN-FEKPFLWLARKLIGDP 171 (385)
Q Consensus 150 a~~~~g-i~~l~~~i~~~l~~~~ 171 (385)
|+++.| ++++|..|++.+....
T Consensus 183 A~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 183 AFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp TTTCHHHHHHHHHHHHHHHHC--
T ss_pred cCCCcccHHHHHHHHHHHHhccC
Confidence 999998 9999999999987653
No 18
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.93 E-value=9e-25 Score=180.26 Aligned_cols=162 Identities=27% Similarity=0.510 Sum_probs=141.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+|+|+++.+...+.++.|.++...........+.+.+|||||.+.+......++.++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999999888888999999988888888888999999999999998888889999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|+|++++.++..+..|+..+... ..+.|+++|+||+|+...+. ......+....+.+++++||+++.|+++++..|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 999999999998888888887764 46788999999999875432 344555667778899999999999999999999
Q ss_pred HHHHh
Q psy125 164 ARKLI 168 (385)
Q Consensus 164 ~~~l~ 168 (385)
.+.+.
T Consensus 164 ~~~i~ 168 (170)
T 1z0j_A 164 SRRIP 168 (170)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 88763
No 19
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=4.5e-25 Score=186.15 Aligned_cols=163 Identities=28% Similarity=0.490 Sum_probs=142.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+|+|++|||||||+|+|+++.+...+.++.|.++...........+.+.+|||||.+.+...+..++.++|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 45799999999999999999999998888888999999998888888888999999999999999888899999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...++...+.+++++||+++.|+++++..|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 9999999999998888988877643 4789999999999865322 345666777778899999999999999999999
Q ss_pred HHHHhc
Q psy125 164 ARKLIG 169 (385)
Q Consensus 164 ~~~l~~ 169 (385)
.+.+..
T Consensus 181 ~~~i~~ 186 (192)
T 2fg5_A 181 SRQIPP 186 (192)
T ss_dssp HHTCC-
T ss_pred HHHHHh
Confidence 987644
No 20
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.93 E-value=1.1e-24 Score=181.73 Aligned_cols=166 Identities=27% Similarity=0.514 Sum_probs=139.9
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccC
Q psy125 3 AEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQG 82 (385)
Q Consensus 3 ~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 82 (385)
..+..+.+||+++|++|||||||+|+|+++.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 456677899999999999999999999998888877888777665 4456677788999999999999988899999999
Q ss_pred cEEEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125 83 QCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 83 d~illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (385)
|++++|+|++++.++..+..|+..+... ..+.|+++|+||+|+...+. ..+...+....+..++++||+++.|+++
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE 161 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 9999999999999998888888877542 35789999999999875432 3445556677788999999999999999
Q ss_pred HHHHHHHHHhc
Q psy125 159 PFLWLARKLIG 169 (385)
Q Consensus 159 l~~~i~~~l~~ 169 (385)
++.+|.+.+..
T Consensus 162 l~~~l~~~~~~ 172 (181)
T 2fn4_A 162 AFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 21
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=7.3e-25 Score=185.14 Aligned_cols=162 Identities=25% Similarity=0.415 Sum_probs=135.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+++|+++.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE-EEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 35689999999999999999999998887777787776553 34555667799999999999999988999999999999
Q ss_pred EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcCC-eEEEEcC
Q psy125 87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKNL-QYYDISA 150 (385)
Q Consensus 87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~Sa 150 (385)
+|||++++.++..+. .|+..+.....+.|+++|+||+|+.... ...+...++...+. +++++||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 999999999998876 6888887766789999999999986532 12345556666666 8999999
Q ss_pred CCCCChHHHHHHHHHHHhc
Q psy125 151 KSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~ 169 (385)
+++.|+++++..|++.+..
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 175 LTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998753
No 22
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.93 E-value=1.2e-24 Score=178.88 Aligned_cols=161 Identities=30% Similarity=0.538 Sum_probs=135.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
|+.+||+++|++|||||||+|+++++.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++|+++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999998887777788776554 44566777899999999999998888899999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhc-CCeEEEEcCCCCCChHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKK-NLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~ 161 (385)
+|+|++++.++..+..|+..+... ..+.|+++|+||+|+...+. ..+...+.... +.+++++||+++.|+++++.
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 999999999999888888777663 35899999999999965432 33445566555 78999999999999999999
Q ss_pred HHHHHHh
Q psy125 162 WLARKLI 168 (385)
Q Consensus 162 ~i~~~l~ 168 (385)
+|++.+.
T Consensus 160 ~l~~~i~ 166 (167)
T 1c1y_A 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988763
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.93 E-value=1.6e-24 Score=181.17 Aligned_cols=163 Identities=30% Similarity=0.515 Sum_probs=140.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
..+.+||+|+|++|||||||+|+|+.+.+...+.++.+... ......+...+.+.+|||||++.+...+..++.++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 35689999999999999999999999888888888888776 55667788889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCC-CCCChHHHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAK-SNYNFEKPF 160 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~l~ 160 (385)
++|||++++.+++.+..|+..+... ..+.|+++|+||+|+...+. ..+...+....+.+++++||+ ++.|+++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHH
Confidence 9999999999999988888887652 36789999999999865322 445566777778999999999 999999999
Q ss_pred HHHHHHHhc
Q psy125 161 LWLARKLIG 169 (385)
Q Consensus 161 ~~i~~~l~~ 169 (385)
..|++.+.+
T Consensus 174 ~~l~~~i~~ 182 (183)
T 3kkq_A 174 HDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987743
No 24
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.93 E-value=7.8e-25 Score=182.79 Aligned_cols=163 Identities=23% Similarity=0.327 Sum_probs=140.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+|+|+++.+...+.++.+.++ ......+...+.+.+|||||++.+......++.++|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3579999999999999999999998888888889988877 556677888899999999999999888899999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...+....+.+++++||+++.|+++++..
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999888888876643 4789999999999864332 45566678888889999999999999999999
Q ss_pred HHHHHhcC
Q psy125 163 LARKLIGD 170 (385)
Q Consensus 163 i~~~l~~~ 170 (385)
|++.+...
T Consensus 163 l~~~~~~~ 170 (181)
T 3t5g_A 163 IILEAEKM 170 (181)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99988654
No 25
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.93 E-value=8.9e-25 Score=182.33 Aligned_cols=163 Identities=31% Similarity=0.544 Sum_probs=141.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+|+|+++.+.....++.+.++...........+.+.+|||||++.+...+..++.++|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 56799999999999999999999998888888888888888888888888899999999999998888899999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+..... ..+...+....+.+++++||+++.|+++++.+|
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999988888888877643 4789999999999865332 345566777778899999999999999999999
Q ss_pred HHHHhc
Q psy125 164 ARKLIG 169 (385)
Q Consensus 164 ~~~l~~ 169 (385)
++.+..
T Consensus 170 ~~~~~~ 175 (181)
T 2efe_B 170 ARRLPR 175 (181)
T ss_dssp HHTCC-
T ss_pred HHHHHh
Confidence 987644
No 26
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=6.4e-25 Score=186.45 Aligned_cols=162 Identities=34% Similarity=0.628 Sum_probs=140.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+|+|++|||||||+++|+++.+...+.++.+.+........+...+.+.+|||||++.+......+++++|++++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 104 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999988888888888888877777788888999999999999888888899999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...+....+.+++++||+++.|+++++..|+
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 105 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999889988877643 4789999999999865332 3345556667788999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 185 ~~i~~ 189 (201)
T 2ew1_A 185 CRLIS 189 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 27
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.93 E-value=8.5e-25 Score=180.47 Aligned_cols=162 Identities=31% Similarity=0.567 Sum_probs=133.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+|+++++.+...+.++.+.+........+...+.+.+|||||++.+......++.++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 35689999999999999999999998888888888888877777777888899999999999988888888999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...+....+.+++++||+++.|+++++.+|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999988888887776533 5789999999999865432 345566777778899999999999999999999
Q ss_pred HHHHh
Q psy125 164 ARKLI 168 (385)
Q Consensus 164 ~~~l~ 168 (385)
++.+.
T Consensus 164 ~~~~~ 168 (170)
T 1z08_A 164 CKRMI 168 (170)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98875
No 28
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.93 E-value=1.3e-24 Score=183.47 Aligned_cols=169 Identities=29% Similarity=0.540 Sum_probs=139.4
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeE-EEEEEeCCe---------eEEEEEEeCCCccc
Q psy125 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLVFHTNRG---------AIRFNVWDTAGQEK 70 (385)
Q Consensus 1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~-~~~~~~~~~---------~~~~~i~Dt~g~~~ 70 (385)
|+.....+.+||+|+|++|||||||+|+|+++.+...+.++.+.+.. ......... .+.+.+|||||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 44434456799999999999999999999998888778888887776 445555554 78999999999998
Q ss_pred cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEE
Q psy125 71 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYY 146 (385)
Q Consensus 71 ~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~ 146 (385)
+......++.++|++|+|+|++++.++..+..|+..+.... .+.|+++|+||+|+...+. ......+....+.+++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 88888889999999999999999999998888988877654 5889999999999865332 3445566667788999
Q ss_pred EEcCCCCCChHHHHHHHHHHHhc
Q psy125 147 DISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 147 ~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
++||+++.|+++++..|.+.+..
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988743
No 29
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.93 E-value=1.2e-24 Score=185.13 Aligned_cols=165 Identities=27% Similarity=0.543 Sum_probs=142.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
+....+||+|+|++|||||||+++|+++.+...+.++.|.++...........+.+.+|||||.+.+...+..++.++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 33457999999999999999999999988888888888988888888888889999999999999888888899999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (385)
+|+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ......+....+.+++++||+++.|+++++.
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 999999999999988888888877643 5789999999999865332 3445566677788999999999999999999
Q ss_pred HHHHHHhc
Q psy125 162 WLARKLIG 169 (385)
Q Consensus 162 ~i~~~l~~ 169 (385)
+|.+.+..
T Consensus 164 ~l~~~i~~ 171 (203)
T 1zbd_A 164 RLVDVICE 171 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987754
No 30
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.93 E-value=9.4e-25 Score=181.68 Aligned_cols=165 Identities=25% Similarity=0.464 Sum_probs=137.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC-eeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
.++.+||+++|++|||||||+++|+++.+...+.++.|.+.......... ..+.+.+|||||++.+...+..++.++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35679999999999999999999998887777778888766666666665 57899999999999998889999999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHhc---CCCC-EEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRVC---ENIP-IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~~---~~~~-~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (385)
+++|+|++++.+++.+..|+..+.... ...| +++|+||+|+...+. ..+...+....+.+++++||+++.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999988888887776532 2556 789999999865332 3445566677788999999999999999
Q ss_pred HHHHHHHHHhcC
Q psy125 159 PFLWLARKLIGD 170 (385)
Q Consensus 159 l~~~i~~~l~~~ 170 (385)
++.+|++.+...
T Consensus 163 l~~~l~~~~~~~ 174 (178)
T 2hxs_A 163 CFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
No 31
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.93 E-value=8.3e-25 Score=185.90 Aligned_cols=163 Identities=34% Similarity=0.568 Sum_probs=132.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+|+|++|||||||+++|+++.+...+.++.+.++.......+...+.+.+|||||++.+...+..+++++|++|+
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIL 107 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEE
Confidence 46899999999999999999999888877777888877777777777778999999999999988888899999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i 163 (385)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...++...+. .++++||+++.|+++++.+|
T Consensus 108 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 187 (201)
T 2hup_A 108 AYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 187 (201)
T ss_dssp EEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999888988887654 6789999999999975322 3455667777788 99999999999999999999
Q ss_pred HHHHhcC
Q psy125 164 ARKLIGD 170 (385)
Q Consensus 164 ~~~l~~~ 170 (385)
++.+...
T Consensus 188 ~~~i~~~ 194 (201)
T 2hup_A 188 ATELIMR 194 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987653
No 32
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.93 E-value=1.1e-24 Score=183.39 Aligned_cols=164 Identities=28% Similarity=0.535 Sum_probs=137.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc-cchhhhhccCc
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-GLRDGYYIQGQ 83 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~-~~~~~~~~~~d 83 (385)
+.++.+||+|+|++|||||||+|+|+++.+...+.++.+.++.......+...+.+.+|||||.+.+. ..+..++.++|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34567999999999999999999999988888888888888877778888888999999999998887 77888999999
Q ss_pred EEEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCC---CCh
Q psy125 84 CAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSN---YNF 156 (385)
Q Consensus 84 ~illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~---~gi 156 (385)
++|+|+|++++.++..+..|+..+... ..+.|+++|+||+|+...+. ......+....+.+++++||+++ .|+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 999999999999999988898888775 35789999999999965432 34455667777889999999999 999
Q ss_pred HHHHHHHHHHHh
Q psy125 157 EKPFLWLARKLI 168 (385)
Q Consensus 157 ~~l~~~i~~~l~ 168 (385)
++++..|++.+.
T Consensus 176 ~~l~~~l~~~i~ 187 (189)
T 1z06_A 176 EAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 33
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.9e-24 Score=182.40 Aligned_cols=162 Identities=29% Similarity=0.540 Sum_probs=141.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.+||+|+|++|||||||+|+|+++.+...+.++.|.++...........+.+.+|||||.+.+...+..++.++|++|+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~ 103 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALL 103 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 46999999999999999999999988888888888888888878888889999999999999998889999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|+|++++.++..+..|+..+.... .+.|+++|+||+|+...+. ..+...++...+..++++||+++.|+++++..|+
T Consensus 104 v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 104 VFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 183 (193)
T ss_dssp EEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999988888888876643 4789999999999865432 3445566777788999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 184 ~~i~~ 188 (193)
T 2oil_A 184 KEIFA 188 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 34
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.93 E-value=2.6e-24 Score=181.95 Aligned_cols=162 Identities=30% Similarity=0.599 Sum_probs=143.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+|+|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||++.+...+..++.++|++++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence 46899999999999999999999998888888888888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ......+....+.+++++||+++.|+++++.+|+
T Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999888988877643 4789999999999865433 3455667778888999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 175 ~~i~~ 179 (196)
T 3tkl_A 175 AEIKK 179 (196)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98755
No 35
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.93 E-value=1.4e-24 Score=178.56 Aligned_cols=161 Identities=27% Similarity=0.512 Sum_probs=133.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
++.+||+++|++|||||||+|+++++.+...+.++.+.+.. .....+...+.+.+|||||.+.+...+..++.++|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 56799999999999999999999988877777777776553 33456777889999999999988888889999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
+|+|++++.++..+..|+..+..... +.|+++|+||+|+...+. ..+...+....+.+++++||+++.|+++++.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999888888888776543 799999999999865432 34556667777889999999999999999999
Q ss_pred HHHHHh
Q psy125 163 LARKLI 168 (385)
Q Consensus 163 i~~~l~ 168 (385)
|.+.+.
T Consensus 161 l~~~i~ 166 (168)
T 1u8z_A 161 LMREIR 166 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 36
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.93 E-value=1.5e-24 Score=183.27 Aligned_cols=163 Identities=25% Similarity=0.439 Sum_probs=139.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+++|+++.+...+.++.+.+... ....+...+.+.+|||||++.+...+..++.++|+++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 456999999999999999999999998888888888877664 4566778899999999999999999999999999999
Q ss_pred EEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcch----hhhHHHHHHHHhcCCe-EEEEcCCCCCChHHHH
Q psy125 87 IMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR----KVKAKSIVFHRKKNLQ-YYDISAKSNYNFEKPF 160 (385)
Q Consensus 87 lV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 160 (385)
+|||++++.++..+ ..|+..+.....+.|+++|+||+|+... ....+...++...+.. ++++||+++.|+++++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHH
Confidence 99999999999886 5688877776678999999999998642 1244555677777776 9999999999999999
Q ss_pred HHHHHHHhcC
Q psy125 161 LWLARKLIGD 170 (385)
Q Consensus 161 ~~i~~~l~~~ 170 (385)
..|++.+...
T Consensus 180 ~~l~~~i~~~ 189 (194)
T 3reg_A 180 EKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHHhc
Confidence 9999988664
No 37
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.93 E-value=4.3e-25 Score=184.71 Aligned_cols=162 Identities=28% Similarity=0.589 Sum_probs=111.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.+||+++|++|||||||+++|+++.+...+.++.+.+........+...+.+.+|||||++.+...+..++.++|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 56999999999999999999988887777777888877777777777788999999999999888888899999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|+|++++.+++.+..|+..+... ..+.|+++|+||+|+...+. ..+...++...+.+++++||+++.|+++++..|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999998888888887764 35789999999999865322 3455667777788999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 167 ~~i~~ 171 (183)
T 2fu5_C 167 RDIKA 171 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88743
No 38
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.93 E-value=1.4e-24 Score=182.37 Aligned_cols=160 Identities=19% Similarity=0.306 Sum_probs=133.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+|+|++|||||||+++|+++.+...+.++.+.++. .....+...+.+.+|||+|++.+..+ ..++.++|+++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 56799999999999999999999999888888888887663 34566788899999999999887765 56889999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcC-CCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISA-KSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~l 159 (385)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...++...+..++++|| +++.|++++
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~l 176 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV 176 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHH
Confidence 9999999999999888988877643 6899999999999865432 34556677777889999999 899999999
Q ss_pred HHHHHHHHh
Q psy125 160 FLWLARKLI 168 (385)
Q Consensus 160 ~~~i~~~l~ 168 (385)
+..|++.+.
T Consensus 177 f~~l~~~i~ 185 (187)
T 3c5c_A 177 FHEAVREAR 185 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 39
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=183.84 Aligned_cols=165 Identities=22% Similarity=0.268 Sum_probs=130.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc-chhhhhccCc
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-LRDGYYIQGQ 83 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-~~~~~~~~~d 83 (385)
+....+||+|+|++|||||||+++|++........++.+.+........+...+.+.+|||+|++.+.. ++..++..+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 335679999999999999999999765433333344445444555566788889999999999987654 6677888999
Q ss_pred EEEEEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125 84 CAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 84 ~illV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (385)
++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+...+. ..+...++...+..++++||+++.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 9999999999999999999998877643 4789999999999965332 34455677777789999999999999999
Q ss_pred HHHHHHHHhc
Q psy125 160 FLWLARKLIG 169 (385)
Q Consensus 160 ~~~i~~~l~~ 169 (385)
+..|++.+..
T Consensus 179 f~~l~~~i~~ 188 (195)
T 3cbq_A 179 FEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 40
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.93 E-value=2.5e-24 Score=183.66 Aligned_cols=168 Identities=29% Similarity=0.570 Sum_probs=143.0
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc
Q psy125 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI 80 (385)
Q Consensus 1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~ 80 (385)
|+..+ ...+||+|+|++|||||||+++|+++.+...+.++.+.++.......+...+.+.+|||||++.+...+..++.
T Consensus 1 M~~~~-~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (206)
T 2bcg_Y 1 MNSEY-DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR 79 (206)
T ss_dssp --CCC-SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred CCccc-CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence 44332 35699999999999999999999999888888888888888777888888899999999999999888999999
Q ss_pred cCcEEEEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125 81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFE 157 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (385)
++|++|+|+|++++.++..+..|+..+.... .+.|+++|+||+|+...+. ......+....+.+++++||+++.|++
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE 159 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999998888888877643 5789999999999975332 344556677778899999999999999
Q ss_pred HHHHHHHHHHhc
Q psy125 158 KPFLWLARKLIG 169 (385)
Q Consensus 158 ~l~~~i~~~l~~ 169 (385)
+++.+|.+.+..
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 41
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.93 E-value=1.5e-24 Score=178.93 Aligned_cols=162 Identities=26% Similarity=0.564 Sum_probs=133.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+++|++|||||||+|+++++.+...+.++.+.+............+.+.+|||||.+.+...+..++.++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 35899999999999999999999988877778888877777777777778999999999999988888999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
|+|++++.++..+..|+..+.... .+.|+++|+||+|+..... ......+....+.+++++||+++.|+++++..|.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999988888888877643 5789999999999854332 33445566677789999999999999999999999
Q ss_pred HHhc
Q psy125 166 KLIG 169 (385)
Q Consensus 166 ~l~~ 169 (385)
.+..
T Consensus 162 ~~~~ 165 (170)
T 1g16_A 162 LIQE 165 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 42
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.93 E-value=1.7e-24 Score=184.70 Aligned_cols=164 Identities=31% Similarity=0.646 Sum_probs=139.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
..+.+||+|+|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||++.+...+..++.++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999999888888888888888777777788889999999999999988888999999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcchhh-hHHHHHHHH-hcCCeEEEEcCCCCCChHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKV-KAKSIVFHR-KKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 158 (385)
|+|+|++++.++..+..|+..+.... .+.|+++|+||+|+..... ......+.. ..+.+++++||+++.|+++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999998888888776643 4789999999999874332 334444555 5677999999999999999
Q ss_pred HHHHHHHHHhc
Q psy125 159 PFLWLARKLIG 169 (385)
Q Consensus 159 l~~~i~~~l~~ 169 (385)
++.+|++.+..
T Consensus 165 l~~~l~~~~~~ 175 (207)
T 1vg8_A 165 AFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 43
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.93 E-value=2.1e-24 Score=180.98 Aligned_cols=163 Identities=31% Similarity=0.599 Sum_probs=141.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+|+|+++.+...+.++.+.+........+...+.+.+|||||++.+...+..++.++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45699999999999999999999998888888888888877777777888899999999999988888888999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|+|++++.++..+..|+..+... ..+.|+++|+||+|+...+. ..+...++...+.+++++||+++.|+++++..|
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999999988888877664 35789999999999865322 345566777788899999999999999999999
Q ss_pred HHHHhc
Q psy125 164 ARKLIG 169 (385)
Q Consensus 164 ~~~l~~ 169 (385)
++.+..
T Consensus 168 ~~~~~~ 173 (186)
T 2bme_A 168 ARKILN 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 44
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.93 E-value=2.3e-24 Score=177.76 Aligned_cols=161 Identities=22% Similarity=0.280 Sum_probs=122.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc-chhhhhccCcEEEE
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-LRDGYYIQGQCAII 87 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-~~~~~~~~~d~ill 87 (385)
.+||+++|++|||||||+++|++........++.+.+........+...+.+.+|||+|++.+.. ....++.++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999887766655555666666666677788899999999999988765 66777889999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
|||++++.+++.+..|+..+..... +.|+++|+||+|+..... ..+...++...+.+++++||+++.|+++++..+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999988877544 899999999999874332 345566777888899999999999999999999
Q ss_pred HHHHhc
Q psy125 164 ARKLIG 169 (385)
Q Consensus 164 ~~~l~~ 169 (385)
++.+..
T Consensus 162 ~~~i~~ 167 (169)
T 3q85_A 162 VRQIRL 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
No 45
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.93 E-value=2.5e-24 Score=180.29 Aligned_cols=159 Identities=20% Similarity=0.345 Sum_probs=130.6
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCc
Q psy125 4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ 83 (385)
Q Consensus 4 ~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d 83 (385)
.+.++.+||+|+|++|||||||+++++.+.+...+.++.+ .+ ......++..+.+.+|||+|++.+. ++.++|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 3447789999999999999999999999988877777744 33 3566777888999999999998654 778999
Q ss_pred EEEEEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcc--h--hhhHHHHHHHHhcC-CeEEEEcCCCCCCh
Q psy125 84 CAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKD--R--KVKAKSIVFHRKKN-LQYYDISAKSNYNF 156 (385)
Q Consensus 84 ~illV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~--~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 156 (385)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.. . ....+...+....+ ..++++||+++.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 9999999999999999888998887643 4789999999999842 1 12344556666665 79999999999999
Q ss_pred HHHHHHHHHHHhc
Q psy125 157 EKPFLWLARKLIG 169 (385)
Q Consensus 157 ~~l~~~i~~~l~~ 169 (385)
+++|.+|++.+..
T Consensus 168 ~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 168 ERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 46
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=3.4e-24 Score=178.63 Aligned_cols=164 Identities=28% Similarity=0.601 Sum_probs=131.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCC-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
.+.+||+++|++|||||||+|+|+++.+. ..+.++.+.+........+...+.+.+|||||++.+...+..++.++|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 56799999999999999999999888774 45667788777777777788889999999999999888888899999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+..... ..+...+....+.+++++||+++.|+++++.+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA 167 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999998888988877654 5789999999999875332 33445566667789999999999999999999
Q ss_pred HHHHHhcC
Q psy125 163 LARKLIGD 170 (385)
Q Consensus 163 i~~~l~~~ 170 (385)
|.+.+...
T Consensus 168 l~~~~~~~ 175 (180)
T 2g6b_A 168 IAKELKRR 175 (180)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99987643
No 47
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.4e-24 Score=183.22 Aligned_cols=163 Identities=26% Similarity=0.581 Sum_probs=132.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
...+||+|+|++|||||||+|+|+++.+...+.++.+.+........+...+.+.+|||||.+.+...+..++.++|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 45689999999999999999999888887778888888888777878888899999999999988888888999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHh-cCCeEEEEcCCCCCChHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRK-KNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...+... .+..++++||+++.|+++++..
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 183 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK 183 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999888887776643 4789999999999865432 2344455555 3679999999999999999999
Q ss_pred HHHHHhc
Q psy125 163 LARKLIG 169 (385)
Q Consensus 163 i~~~l~~ 169 (385)
|.+.+..
T Consensus 184 l~~~i~~ 190 (192)
T 2il1_A 184 LVDDILK 190 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 48
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.93 E-value=3e-24 Score=182.49 Aligned_cols=164 Identities=26% Similarity=0.448 Sum_probs=135.7
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCc
Q psy125 4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ 83 (385)
Q Consensus 4 ~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d 83 (385)
.|....+||+++|++|||||||+++++++.+...+.++.+.+.... ...+...+.+.+|||||++.+...+..++.++|
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE-EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE-EEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 4556679999999999999999999999888777777777665533 566777899999999999999888889999999
Q ss_pred EEEEEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEE
Q psy125 84 CAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYD 147 (385)
Q Consensus 84 ~illV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~ 147 (385)
++++|||++++.++..+ ..|+..+.....+.|+++|+||+|+..... ..+...++...+. .+++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 99999999999999887 567777776667899999999999865321 2234456666666 8999
Q ss_pred EcCCCCCChHHHHHHHHHHHh
Q psy125 148 ISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
+||+++.|+++++..|++.+.
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 49
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.93 E-value=2.5e-24 Score=179.12 Aligned_cols=162 Identities=28% Similarity=0.557 Sum_probs=139.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
++.+||+++|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||.+.+...+..++.++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988888888888888777777778888899999999999998888899999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+...+. ..+...+....+.+++++||+++.|+++++..|
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999998888888776633 5789999999999865433 344555666778899999999999999999999
Q ss_pred HHHHh
Q psy125 164 ARKLI 168 (385)
Q Consensus 164 ~~~l~ 168 (385)
.+.+.
T Consensus 172 ~~~~~ 176 (179)
T 2y8e_A 172 AAALP 176 (179)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 88653
No 50
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.93 E-value=3e-24 Score=179.90 Aligned_cols=164 Identities=28% Similarity=0.508 Sum_probs=136.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
+++.+||+++|++|||||||+++|+++.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++|++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE-EEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 356799999999999999999999988887777777765543 3456677889999999999999988888899999999
Q ss_pred EEEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEEc
Q psy125 86 IIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDIS 149 (385)
Q Consensus 86 llV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~S 149 (385)
++|+|++++.++..+. .|+..+.....+.|+++|+||+|+..... ..+...+....+. +++++|
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 9999999999998876 68887777666899999999999864321 2234456666665 999999
Q ss_pred CCCCCChHHHHHHHHHHHhcC
Q psy125 150 AKSNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~ 170 (385)
|+++.|+++++..|.+.+...
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999998654
No 51
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.93 E-value=2e-24 Score=185.08 Aligned_cols=166 Identities=28% Similarity=0.492 Sum_probs=137.0
Q ss_pred CCC-CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccC
Q psy125 4 EMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQG 82 (385)
Q Consensus 4 ~~~-~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 82 (385)
.|+ .+.+||+++|++|||||||+++|+.+.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++
T Consensus 3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 81 (212)
T 2j0v_A 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA 81 (212)
T ss_dssp CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEECSSCEEEEEEECCCCCCCCCC--CGGGTTC
T ss_pred CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhccCC
Confidence 444 46799999999999999999999998887777788876553 3455677789999999999999998888999999
Q ss_pred cEEEEEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh----------hHHHHHHHHhcCC-eEEEEcC
Q psy125 83 QCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV----------KAKSIVFHRKKNL-QYYDISA 150 (385)
Q Consensus 83 d~illV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~-~~~~~Sa 150 (385)
|++|+|||++++.++..+. .|+..+.....+.|+++|+||+|+..... ..+...+....+. +++++||
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 9999999999999998876 68888877667899999999999865432 3344556666665 9999999
Q ss_pred CCCCChHHHHHHHHHHHhcC
Q psy125 151 KSNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~~ 170 (385)
+++.|+++++..|++.+...
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999988654
No 52
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.93 E-value=1.4e-24 Score=184.14 Aligned_cols=163 Identities=30% Similarity=0.526 Sum_probs=129.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+|+|++|||||||+|+|+++.+...+.++.|.++.......+...+.+.+|||||.+.+...+..++.++|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 45799999999999999999999998888888889998888888888888999999999999988888888999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcch-------hh-hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR-------KV-KAKSIVFHRKKNLQYYDISAKSNYNFE 157 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~-------~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (385)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+... .. ......++...+.+++++||+++.|++
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 185 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV 185 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHH
Confidence 9999999999999888888776543 47899999999998632 11 234455666778899999999999999
Q ss_pred HHHHHHHHHHhc
Q psy125 158 KPFLWLARKLIG 169 (385)
Q Consensus 158 ~l~~~i~~~l~~ 169 (385)
+++..|++.+..
T Consensus 186 el~~~l~~~i~~ 197 (199)
T 2p5s_A 186 EAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 53
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=3.4e-25 Score=186.78 Aligned_cols=162 Identities=25% Similarity=0.564 Sum_probs=142.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.+||+|+|++|||||||+|+|+++.+...+.++.+.++...........+.+.+|||||.+.+...+..++.++|++++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 46899999999999999999999988888888888888888888888888999999999999888888999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...+....+.+++++||+++.|+++++..|+
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999889988887644 5789999999999865432 3445567777788999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 182 ~~i~~ 186 (191)
T 3dz8_A 182 DAICD 186 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 54
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.92 E-value=2.6e-24 Score=179.54 Aligned_cols=164 Identities=27% Similarity=0.571 Sum_probs=125.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
..+.++|+++|++|||||||+++++++.+...+.++.+.+......... ...+.+.+|||||++.+...+..++.++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3567999999999999999999999988888888888877777766666 456899999999999888888889999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcchh---hhHHHHHHHH-hcCCeEEEEcCCCCCC
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRK---VKAKSIVFHR-KKNLQYYDISAKSNYN 155 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~~---~~~~~~~~~~-~~~~~~~~~Sa~~~~g 155 (385)
+++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.... ...+...+.. ....+++++||+++.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 999999999999999888888776643 578999999999985432 1334455555 4667999999999999
Q ss_pred hHHHHHHHHHHHhc
Q psy125 156 FEKPFLWLARKLIG 169 (385)
Q Consensus 156 i~~l~~~i~~~l~~ 169 (385)
+++++.+|.+.+..
T Consensus 165 i~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 165 VDTAFEEIARSALQ 178 (182)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987753
No 55
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.92 E-value=3.1e-24 Score=179.91 Aligned_cols=164 Identities=27% Similarity=0.502 Sum_probs=136.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
.+++.+||+++|++|||||||+|+|+++.+...+.++.+.... .........+.+.+|||||++.+...+..++..+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 3467899999999999999999999988877777777775553 334567778899999999999888888899999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
+++|||++++.++..+..|+..+..... +.|+++|+||+|+...+. ..+...++...+.+++++||+++.|+++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999888888888777544 789999999999865432 345566777778899999999999999999
Q ss_pred HHHHHHHhc
Q psy125 161 LWLARKLIG 169 (385)
Q Consensus 161 ~~i~~~l~~ 169 (385)
.+|.+.+..
T Consensus 173 ~~l~~~i~~ 181 (187)
T 2a9k_A 173 FDLMREIRA 181 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988743
No 56
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.92 E-value=2.2e-24 Score=177.18 Aligned_cols=161 Identities=26% Similarity=0.496 Sum_probs=134.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
|+.+||+++|++|||||||+|+++++.+...+.++.+... ..........+.+.+|||||++.+...+..++.++|+++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4679999999999999999999998888777777766444 455667778889999999999988888888999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...+....+.+++++||+++.|+++++..
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 9999999999988888887776643 4799999999999865332 33445566667889999999999999999999
Q ss_pred HHHHHh
Q psy125 163 LARKLI 168 (385)
Q Consensus 163 i~~~l~ 168 (385)
|.+.+.
T Consensus 160 l~~~~~ 165 (167)
T 1kao_A 160 IVRQMN 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988763
No 57
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=183.81 Aligned_cols=163 Identities=20% Similarity=0.318 Sum_probs=135.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+|+|++|||||||+|+|+++.+...+.++.+.+. ..........+.+.+|||||.+.+...+..++.++|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999988888888888766 555556667899999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
+|||++++.+++.+..|+..+... ..+.|+++|+||+|+..... ..+...+....+.+++++||+++.|+++++..
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999988888887653 24789999999999865433 34455677778889999999999999999999
Q ss_pred HHHHHhcC
Q psy125 163 LARKLIGD 170 (385)
Q Consensus 163 i~~~l~~~ 170 (385)
|++.+...
T Consensus 181 l~~~i~~~ 188 (201)
T 3oes_A 181 VIQEIARV 188 (201)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988654
No 58
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.92 E-value=3.2e-24 Score=184.65 Aligned_cols=169 Identities=50% Similarity=0.864 Sum_probs=141.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
...+||+|+|++|||||||+|+|+++.+...+.++.+.+..........+ .+.+.+|||||++.+......++.++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 45799999999999999999999888888888888888777776665544 48999999999999988899999999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
|+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+..... ......+....+.+++++||+++.|+++++..
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999888888877643 3589999999999876432 33344566677889999999999999999999
Q ss_pred HHHHHhcCCCccc
Q psy125 163 LARKLIGDPNLEF 175 (385)
Q Consensus 163 i~~~l~~~~~~~~ 175 (385)
|++.+........
T Consensus 169 l~~~~~~~~~~~~ 181 (218)
T 4djt_A 169 LARIFTGRPDLIF 181 (218)
T ss_dssp HHHHHHCCTTCCB
T ss_pred HHHHHhccccccc
Confidence 9999988765544
No 59
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.92 E-value=3.1e-24 Score=176.37 Aligned_cols=159 Identities=18% Similarity=0.255 Sum_probs=112.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.+||+++|++|||||||+|++++. ......++.+.++. .....+...+.+.+|||+|++.+......++..+|++++
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEE-EEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceE-EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 3589999999999999999996644 44455677777774 445678889999999999999988888999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
|||++++.+++.+..|+..+... ..+.|+++|+||+|+..... ......+....+.+++++||+++.|+++++.+|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 99999999999988888887763 35789999999999865332 344456777778899999999999999999999
Q ss_pred HHHHh
Q psy125 164 ARKLI 168 (385)
Q Consensus 164 ~~~l~ 168 (385)
.+.+.
T Consensus 159 ~~~~~ 163 (166)
T 3q72_A 159 VRQIR 163 (166)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 60
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.92 E-value=2.7e-24 Score=182.61 Aligned_cols=162 Identities=31% Similarity=0.603 Sum_probs=130.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.+||+|+|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||.+.+...+..++.++|++|+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 103 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 103 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEE
Confidence 46999999999999999999999888877778888877777777778888999999999999888888999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|+|++++.+++.+..|+..+... ..+.|+++|+||+|+..... ..+...++...+..++++||+++.|+++++.+|+
T Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 104 VYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999988898887663 35789999999999865332 3455667777888999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 184 ~~i~~ 188 (200)
T 2o52_A 184 RTILN 188 (200)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 61
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.9e-24 Score=184.84 Aligned_cols=163 Identities=29% Similarity=0.536 Sum_probs=133.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..+||+|+|++|||||||+++|+++.+...+.++.+.+............+.+.+|||||++.+...+..+++.+|++|+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vil 91 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALI 91 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEE
Confidence 45899999999999999999999988887888888888877777778888999999999999999999999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|||++++.+++.+..|+..+... ..+.|+++|+||+|+...+. ..+...+....+.+++++||+++.|+++++.+|+
T Consensus 92 V~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 92 VYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171 (223)
T ss_dssp EEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999888898887764 34789999999999865332 3445567777788999999999999999999999
Q ss_pred HHHhcC
Q psy125 165 RKLIGD 170 (385)
Q Consensus 165 ~~l~~~ 170 (385)
+.+...
T Consensus 172 ~~i~~~ 177 (223)
T 3cpj_B 172 NTIYQK 177 (223)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 998664
No 62
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.92 E-value=6.7e-24 Score=180.88 Aligned_cols=163 Identities=27% Similarity=0.509 Sum_probs=138.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
.++.++|+|+|++|||||||+|+|+++.+...+.++.+.+.. .....+...+.+.+|||||++.+...+..++.++|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 356799999999999999999999988887777777776553 3455677788999999999998888888999999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (385)
++|||++++.++..+..|+..+..... +.|+++|+||+|+..... ..+...+....+.+++++||+++.|+++++.
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999888889888877543 889999999999875432 3455666777788999999999999999999
Q ss_pred HHHHHHhc
Q psy125 162 WLARKLIG 169 (385)
Q Consensus 162 ~i~~~l~~ 169 (385)
+|++.+..
T Consensus 170 ~l~~~i~~ 177 (206)
T 2bov_A 170 DLMREIRA 177 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998743
No 63
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.92 E-value=4.7e-24 Score=176.88 Aligned_cols=161 Identities=22% Similarity=0.316 Sum_probs=124.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc--cccchhhhhccCcE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK--FGGLRDGYYIQGQC 84 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~--~~~~~~~~~~~~d~ 84 (385)
++.+||+++|++|||||||+|+|+++.+.. ..++.|.+........+...+.+.+|||||+.. +......++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERD-LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcc-ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 467999999999999999999987766543 345677777777777888889999999999886 44556677889999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
+++|||++++.+++.+..|+..+... ..+.|+++|+||+|+...+. ..+...+....+.+++++||+++.|+++++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 99999999999999888888877653 24789999999999975432 334445666677899999999999999999
Q ss_pred HHHHHHHh
Q psy125 161 LWLARKLI 168 (385)
Q Consensus 161 ~~i~~~l~ 168 (385)
.+|++.+.
T Consensus 161 ~~l~~~~~ 168 (175)
T 2nzj_A 161 EGVVRQLR 168 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 64
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.92 E-value=2.9e-24 Score=179.92 Aligned_cols=163 Identities=23% Similarity=0.401 Sum_probs=134.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
..+.+||+++|++|||||||+++|+++.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 346799999999999999999999998887777888876654 3456677789999999999999888888999999999
Q ss_pred EEEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcchh-------------h-hHHHHHHHHhcC-CeEEEEc
Q psy125 86 IIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK-------------V-KAKSIVFHRKKN-LQYYDIS 149 (385)
Q Consensus 86 llV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~-------------~-~~~~~~~~~~~~-~~~~~~S 149 (385)
++|||++++.+++.+ ..|+..+.....+.|+++|+||+|+.... . ..+...++...+ .+++++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999887 57888777766789999999999986421 1 234455665555 6999999
Q ss_pred CC-CCCChHHHHHHHHHHHhc
Q psy125 150 AK-SNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 150 a~-~~~gi~~l~~~i~~~l~~ 169 (385)
|+ ++.|+++++..+++.+..
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred ecCCCcCHHHHHHHHHHHHhc
Confidence 98 689999999999988753
No 65
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=5.5e-24 Score=181.69 Aligned_cols=165 Identities=27% Similarity=0.435 Sum_probs=130.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
|.+..+||+++|++|||||||+|+|+++.+...+.++.+.+.... ...+...+.+.+|||||++.+...+..++.++|+
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 345678999999999999999999999888777777777665443 5567778999999999999988888899999999
Q ss_pred EEEEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEE
Q psy125 85 AIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDI 148 (385)
Q Consensus 85 illV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~ 148 (385)
+++|||++++.+++.+ ..|+..+.....+.|+++|+||+|+..... ..+...++...+. .++++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 9999999999998887 567777776667899999999999865421 2233445555565 89999
Q ss_pred cCCCCCChHHHHHHHHHHHhcC
Q psy125 149 SAKSNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~ 170 (385)
||+++.|+++++..|.+.+...
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 66
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.92 E-value=1.2e-23 Score=172.50 Aligned_cols=162 Identities=26% Similarity=0.486 Sum_probs=134.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
|+.+||+++|++|||||||+|+++++.+...+.++.+... ..........+.+.+|||||...+...+..++..+|+++
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 3568999999999999999999998877776666666443 344556777889999999999988888888999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 163 (385)
+|+|+++..++..+..|+..+..... +.|+++++||+|+..... ......+....+.+++++|++++.|+++++.+|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999888888887776433 799999999999865332 344556667778899999999999999999999
Q ss_pred HHHHhc
Q psy125 164 ARKLIG 169 (385)
Q Consensus 164 ~~~l~~ 169 (385)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 987643
No 67
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.92 E-value=3.2e-24 Score=182.76 Aligned_cols=162 Identities=23% Similarity=0.393 Sum_probs=134.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
...+||+++|++|||||||+++|+++.+...+.++.+.++. .....+...+.+.+|||+|++.+...+..++.++|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 45799999999999999999999998888777888876663 34556777899999999999999888889999999999
Q ss_pred EEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcC-CeEEEEcC
Q psy125 87 IMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKN-LQYYDISA 150 (385)
Q Consensus 87 lV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~Sa 150 (385)
+|||++++.++..+ ..|+..+.....+.|+++|+||+|+.... ...+...++...+ ..++++||
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 184 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence 99999999999887 67888887766789999999999986421 1233455665555 68999999
Q ss_pred C-CCCChHHHHHHHHHHHhc
Q psy125 151 K-SNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 151 ~-~~~gi~~l~~~i~~~l~~ 169 (385)
+ ++.|++++|..|++.+..
T Consensus 185 k~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 185 LQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhh
Confidence 8 689999999999987653
No 68
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.92 E-value=6.9e-24 Score=176.52 Aligned_cols=156 Identities=19% Similarity=0.353 Sum_probs=125.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
++.+||+++|++|||||||+++|+++.+.. +.++.+..+ ......+...+.+.+|||+|++. ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 578999999999999999999999888766 677777554 44556677889999999999875 46788999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcc---hhh-hHHHHHHHHhc-CCeEEEEcCCCCCChH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKD---RKV-KAKSIVFHRKK-NLQYYDISAKSNYNFE 157 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~---~~~-~~~~~~~~~~~-~~~~~~~Sa~~~~gi~ 157 (385)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+.. +.. ..+...++... +.+++++||+++.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999998888766555431 4789999999999842 111 33444555544 6799999999999999
Q ss_pred HHHHHHHHHHhc
Q psy125 158 KPFLWLARKLIG 169 (385)
Q Consensus 158 ~l~~~i~~~l~~ 169 (385)
+++..|++.+..
T Consensus 158 ~lf~~l~~~~~~ 169 (178)
T 2iwr_A 158 RVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 69
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.92 E-value=1.5e-23 Score=178.53 Aligned_cols=162 Identities=30% Similarity=0.526 Sum_probs=135.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-----------------------------
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA----------------------------- 57 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~----------------------------- 57 (385)
.+.+||+|+|++|||||||+|+|+++.+...+.++.+.+............
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 357999999999999999999999998888888888877766666655544
Q ss_pred --------EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125 58 --------IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 129 (385)
Q Consensus 58 --------~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~ 129 (385)
+.+.+|||||++.+......++.++|++|+|+|++++.++..+..|+..+.... ..|+++|+||+|+....
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIILVANKIDKNKFQ 163 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTTCC-CC
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCCccccc
Confidence 899999999999998889999999999999999999999988888888877653 49999999999943222
Q ss_pred h-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 130 V-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 130 ~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
. ..+...++...+.+++++||+++.|+++++.+|.+.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2 455666777788899999999999999999999987753
No 70
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.92 E-value=8.4e-24 Score=179.65 Aligned_cols=162 Identities=27% Similarity=0.452 Sum_probs=127.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+++|+++.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++|+++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE-EEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 56799999999999999999999988877777777765543 34556777889999999999999888889999999999
Q ss_pred EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcCC-eEEEEcC
Q psy125 87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKNL-QYYDISA 150 (385)
Q Consensus 87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~Sa 150 (385)
+|||++++.++..+. .|+..+.....+.|+++|+||+|+.... ...+...++...+. +++++||
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 176 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence 999999999998876 6888887766789999999999986521 12344556666566 8999999
Q ss_pred CCCCChHHHHHHHHHHHhc
Q psy125 151 KSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~ 169 (385)
+++.|+++++..|++.+..
T Consensus 177 ~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 177 LTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 71
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.92 E-value=5.3e-25 Score=186.35 Aligned_cols=162 Identities=19% Similarity=0.179 Sum_probs=129.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------cccceeeeEEEEE-EeCCeeEEEEEEeCCCccccccc
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY-----------VATLGVEVHPLVF-HTNRGAIRFNVWDTAGQEKFGGL 74 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~-----------~~~~g~t~~~~~~-~~~~~~~~~~i~Dt~g~~~~~~~ 74 (385)
.+.+||+|+|++|||||||++. +.+.+...+ .++.+.++..... ..+...+.+.+|||||++.+...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 4579999999999999999976 555555543 3355555444433 55667899999999999999999
Q ss_pred hhhhhccCcEEEEEEeCCC------hhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEE
Q psy125 75 RDGYYIQGQCAIIMFDVTS------RITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYD 147 (385)
Q Consensus 75 ~~~~~~~~d~illV~d~~~------~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~ 147 (385)
+..+++++|++|+|||+++ ..++..+..|+..+.....+.|+++|+||+|+.......+...++...+. ++++
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLE 170 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEE
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEE
Confidence 9999999999999999994 45566666676665434468999999999999776556667777777788 9999
Q ss_pred EcCCCCCChHHHHHHHHHHHhc
Q psy125 148 ISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
+||+++.|+++++.+|++.+..
T Consensus 171 ~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 171 AVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CBGGGTBTHHHHHHHHHHHHHH
T ss_pred EecCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 72
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.92 E-value=5.3e-24 Score=182.78 Aligned_cols=163 Identities=28% Similarity=0.520 Sum_probs=116.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+++|+++.+...+.++.+... ......+...+.+.+|||||++.+...+..++.++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4679999999999999999999998877766667665444 334566778889999999999998888888999999999
Q ss_pred EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEEcC
Q psy125 87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDISA 150 (385)
Q Consensus 87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~Sa 150 (385)
+|||++++.+++.+. .|+..+.....+.|+++|+||+|+..... ..+...++...+. .++++||
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 999999999998876 68888877667899999999999865431 2234556666676 9999999
Q ss_pred CCCCChHHHHHHHHHHHhcC
Q psy125 151 KSNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~~ 170 (385)
+++.|+++++..|++.+...
T Consensus 191 ~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999987653
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.92 E-value=1.3e-23 Score=176.74 Aligned_cols=165 Identities=25% Similarity=0.472 Sum_probs=125.3
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCc
Q psy125 4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ 83 (385)
Q Consensus 4 ~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d 83 (385)
...++.+||+++|.+|||||||+|+|+++.+...+.++.+.... .........+.+.+|||||.+.+...+..++..+|
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE-EEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 34467899999999999999999999988777666666654443 34556777889999999999988888889999999
Q ss_pred EEEEEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 84 CAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 84 ~illV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
++++|+|+++..++..+..|+..+.... .+.|+++|+||+|+..... ..+...+....+.+++++||+++.|+++++
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999988888887776643 3789999999999865322 345556677777899999999999999999
Q ss_pred HHHHHHHhc
Q psy125 161 LWLARKLIG 169 (385)
Q Consensus 161 ~~i~~~l~~ 169 (385)
.+|.+.+..
T Consensus 175 ~~l~~~~~~ 183 (190)
T 3con_A 175 YTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 74
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.3e-23 Score=179.99 Aligned_cols=163 Identities=26% Similarity=0.553 Sum_probs=138.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.++|+|+|++|||||||+++|+++.+...+.++.+.+............+.+.+|||||++.+...+..++..+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999988887778888888777777777878899999999999999888899999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+..... ......+....+.+++++||+++.|+++++.+|.
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999988888888877643 3689999999999854322 3344556666678999999999999999999998
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 178 ~~~~~ 182 (213)
T 3cph_A 178 KLIQE 182 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 75
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.3e-23 Score=177.78 Aligned_cols=161 Identities=25% Similarity=0.372 Sum_probs=134.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+++|+++.+...+.++.+... ......+...+.+.+|||||.+. ...+..++..+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 5679999999999999999999999888877778777655 34456677889999999999987 667788889999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCC-ChHHHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNY-NFEKPFL 161 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~ 161 (385)
+|||++++.+++.+..|+..+... ..+.|+++|+||+|+...+. ..+...+....+.+++++||+++. |+++++.
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 999999999999988888877663 25889999999999876322 344556666778899999999999 9999999
Q ss_pred HHHHHHhc
Q psy125 162 WLARKLIG 169 (385)
Q Consensus 162 ~i~~~l~~ 169 (385)
+|++.+..
T Consensus 184 ~l~~~i~~ 191 (196)
T 2atv_A 184 ELCREVRR 191 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988754
No 76
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.92 E-value=2.1e-23 Score=175.17 Aligned_cols=161 Identities=25% Similarity=0.478 Sum_probs=132.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.+||+++|++|||||||+|+|+++.+...+.++.+. ........+...+.+.+|||||++.+...+..++.++|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 5689999999999999999999988877777666653 333455667788899999999999999999999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|||++++.++..+..|+..+.... .+.|+++|+||+|+..... ......+....+.+++++||+++.|+++++.+|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999988888888877632 4789999999999875433 3445566777788999999999999999999999
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 162 ~~~~~ 166 (189)
T 4dsu_A 162 REIRK 166 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98743
No 77
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.92 E-value=2.2e-24 Score=180.10 Aligned_cols=162 Identities=30% Similarity=0.493 Sum_probs=120.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+++++.+.+...+.++.+...... ...+...+.+.+|||||++.+...+..++.++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCC-CC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEE-EEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4679999999999999999999998887777667666443321 233455678889999999999888999999999999
Q ss_pred EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh------------hHHHHHHHHhcCC-eEEEEcCCC
Q psy125 87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKS 152 (385)
Q Consensus 87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~-~~~~~Sa~~ 152 (385)
+|+|++++.+++.+. .|+..+.....+.|+++|+||+|+..... ..+...+....+. +++++||++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 999999999998876 68888777667899999999999865332 2344556666665 899999999
Q ss_pred CCChHHHHHHHHHHHhc
Q psy125 153 NYNFEKPFLWLARKLIG 169 (385)
Q Consensus 153 ~~gi~~l~~~i~~~l~~ 169 (385)
+.|+++++..|++.+.+
T Consensus 165 ~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CTTHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988743
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=7.3e-24 Score=179.63 Aligned_cols=159 Identities=21% Similarity=0.378 Sum_probs=127.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
.+.+||+|+|++|||||||+++|+++.+.. .+.++.|.+.... +...+.+.+|||||++.+...+..++.++|++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 567999999999999999999998888777 6788888655433 34678999999999999999999999999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhc---------CCCCEEEEEeCCCCcchhhhHHHH---HH---HHhcCCeEEEEcC
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVC---------ENIPIVLCGNKVDIKDRKVKAKSI---VF---HRKKNLQYYDISA 150 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~---------~~~~~ilv~nK~Dl~~~~~~~~~~---~~---~~~~~~~~~~~Sa 150 (385)
|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.......+.. .+ .......++++||
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 170 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNG 170 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBT
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeC
Confidence 99999999999988888887776531 288999999999997653222221 11 1335668999999
Q ss_pred CCCCChHHHHHHHHHHHhc
Q psy125 151 KSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~ 169 (385)
+++.|+++++..|++.+..
T Consensus 171 ~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 171 LKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 79
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.7e-23 Score=178.45 Aligned_cols=162 Identities=20% Similarity=0.281 Sum_probs=125.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCC-CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc-cccchhhhhccCcE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQC 84 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~-~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~-~~~~~~~~~~~~d~ 84 (385)
.+.+||+|+|++|||||||+|+|++... .....++.|.+.......+++..+.+.+|||+|... +..+...+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 4569999999999999999999886432 222234466665556667788889999999999875 34455667788999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
+|+|||+++..+|+.+..|...+... ..+.|+++|+||+|+...+. ..+...++...+.+++++||+++.|++++|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf 194 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999988888777642 35789999999999965332 233444556667899999999999999999
Q ss_pred HHHHHHHh
Q psy125 161 LWLARKLI 168 (385)
Q Consensus 161 ~~i~~~l~ 168 (385)
..|++.+.
T Consensus 195 ~~l~~~i~ 202 (211)
T 2g3y_A 195 EGIVRQVR 202 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 80
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.6e-23 Score=172.91 Aligned_cols=160 Identities=24% Similarity=0.419 Sum_probs=131.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.+||+++|++|||||||+|+++++.+...+.++.+.+... ....+...+.+.+|||||...+......++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE-EEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 46899999999999999999999888777777777755543 34567778899999999999888888889999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc---CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~---~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ......+....+.+++++||+++.|+++++.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999988877877666532 4789999999999865432 23445566667789999999999999999999
Q ss_pred HHHHHh
Q psy125 163 LARKLI 168 (385)
Q Consensus 163 i~~~l~ 168 (385)
|.+.+.
T Consensus 161 l~~~~~ 166 (172)
T 2erx_A 161 LLNLEK 166 (172)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 988653
No 81
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.91 E-value=6.2e-24 Score=182.72 Aligned_cols=162 Identities=32% Similarity=0.547 Sum_probs=134.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe----------eEEEEEEeCCCccccccchhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG----------AIRFNVWDTAGQEKFGGLRDG 77 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~----------~~~~~i~Dt~g~~~~~~~~~~ 77 (385)
+.+||+|+|++|||||||+|+|+++.+...+.++.+.++.......... .+.+.+|||||++.+...+..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~ 103 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA 103 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHH
Confidence 4689999999999999999999988887777777777666555555544 789999999999988888889
Q ss_pred hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCC
Q psy125 78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSN 153 (385)
Q Consensus 78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~ 153 (385)
++.++|++|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ..+...+....+.+++++||+++
T Consensus 104 ~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g 183 (217)
T 2f7s_A 104 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATG 183 (217)
T ss_dssp HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCC
Confidence 9999999999999999999988888877665433 5789999999999865432 34556677777889999999999
Q ss_pred CChHHHHHHHHHHHhc
Q psy125 154 YNFEKPFLWLARKLIG 169 (385)
Q Consensus 154 ~gi~~l~~~i~~~l~~ 169 (385)
.|+++++.+|++.+..
T Consensus 184 ~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 184 QNVEKAVETLLDLIMK 199 (217)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988743
No 82
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.9e-23 Score=177.01 Aligned_cols=164 Identities=26% Similarity=0.458 Sum_probs=134.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
..+.++|+++|++|||||||+|+|+++.+...+.++.+.+... ....+...+.+.+|||||++.+...+..++.++|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQ-VISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEE-EEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeE-EEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 3467999999999999999999999988877777777755543 355677788999999999998888888899999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHh---cCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~---~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (385)
++|||++++.+++.+..|+..+... ..+.|+++|+||+|+..... ......+....+.+++++||+++.|+++++.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 9999999999998877777666553 24789999999999875433 3344556666778999999999999999999
Q ss_pred HHHHHHhcC
Q psy125 162 WLARKLIGD 170 (385)
Q Consensus 162 ~i~~~l~~~ 170 (385)
+|.+.+...
T Consensus 164 ~l~~~~~~~ 172 (199)
T 2gf0_A 164 ELLTLETRR 172 (199)
T ss_dssp HHHHHCSSS
T ss_pred HHHHHHhhh
Confidence 999986543
No 83
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=2.3e-23 Score=174.70 Aligned_cols=159 Identities=17% Similarity=0.269 Sum_probs=127.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+|+++++. ...+.++.+.+...... +.+.+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEH----RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEE----TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999988777 66777787755443332 4688999999999988888899999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 159 (385)
+|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.......+..+... ..+.+++++||+++.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG 170 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence 999999999998888888777653 35799999999999976433333322221 23458999999999999999
Q ss_pred HHHHHHHHhcC
Q psy125 160 FLWLARKLIGD 170 (385)
Q Consensus 160 ~~~i~~~l~~~ 170 (385)
+..|.+.+...
T Consensus 171 ~~~l~~~i~~~ 181 (186)
T 1ksh_A 171 IDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 84
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.91 E-value=2e-23 Score=177.75 Aligned_cols=160 Identities=28% Similarity=0.502 Sum_probs=129.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
++.+||+++|++|||||||+++|+.+.+...+.++.+... ......+...+.+.+|||||++.+......++.++|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 5679999999999999999999998888777777776443 334556677888999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEEcC
Q psy125 87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDISA 150 (385)
Q Consensus 87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~Sa 150 (385)
+|||++++.+++.+. .|+..+.....+.|+++|+||+|+..... ..+...++...+. +++++||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 999999999998876 68888777667899999999999865332 2234445555554 6999999
Q ss_pred CCCCChHHHHHHHHHHH
Q psy125 151 KSNYNFEKPFLWLARKL 167 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l 167 (385)
+++.|+++++..|.+.+
T Consensus 187 ~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 187 LTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTCTTHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998754
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.1e-23 Score=175.06 Aligned_cols=159 Identities=21% Similarity=0.323 Sum_probs=123.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.++|+++|++|||||||+++++++.+. .+.++.|.+...... +++.+.+|||||++.+...+..++.++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEE----TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999998877766 666777755443332 3588999999999998888899999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 159 (385)
+|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.......+...... ..+..++++||+++.|++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 168 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHH
Confidence 999999999998888888887653 36899999999999975332233332222 23458999999999999999
Q ss_pred HHHHHHHHhcC
Q psy125 160 FLWLARKLIGD 170 (385)
Q Consensus 160 ~~~i~~~l~~~ 170 (385)
+.+|++.+...
T Consensus 169 ~~~l~~~~~~~ 179 (187)
T 1zj6_A 169 LEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHCC-
T ss_pred HHHHHHHHHHH
Confidence 99999987554
No 86
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.91 E-value=2.8e-24 Score=183.47 Aligned_cols=163 Identities=25% Similarity=0.389 Sum_probs=101.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC--CCCCcccccceeeeEEEEEEeCCe--eEEEEEEeCCCccccccchhhhhccC
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHTNRG--AIRFNVWDTAGQEKFGGLRDGYYIQG 82 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~--~~~~~~~~~~g~t~~~~~~~~~~~--~~~~~i~Dt~g~~~~~~~~~~~~~~~ 82 (385)
.+.++|+|+|++|||||||+++|+++ .+...+.++.+.+........... .+.+.+|||||++.+...+..++.++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35689999999999999999998887 666677777776666666666665 89999999999998888888899999
Q ss_pred cEEEEEEeCCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcc-hhh--hHHHHHHHHhcCCeEEEEcCCC-CC
Q psy125 83 QCAIIMFDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKD-RKV--KAKSIVFHRKKNLQYYDISAKS-NY 154 (385)
Q Consensus 83 d~illV~d~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~~~~~Sa~~-~~ 154 (385)
|++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.. .+. ..+...+....+.+++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 99999999999999998889998887754 3889999999999976 322 3456667777788999999999 99
Q ss_pred ChHHHHHHHHHHHhc
Q psy125 155 NFEKPFLWLARKLIG 169 (385)
Q Consensus 155 gi~~l~~~i~~~l~~ 169 (385)
|+++++.+|++.+..
T Consensus 178 gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 178 DADAPFLSIATTFYR 192 (208)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987743
No 87
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=2.6e-23 Score=187.85 Aligned_cols=226 Identities=16% Similarity=0.145 Sum_probs=169.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccccc----------c
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFG----------G 73 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~----------~ 73 (385)
.+.+...|+++|++|||||||+|+|++..+ ....+.+++|+.........+ ...+.+|||||+.... .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKV-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCc-cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 445678999999999999999999776553 455677888887776666656 7899999999986544 3
Q ss_pred chhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc-chhhhH-HHHHHHHhcC--CeEEEEc
Q psy125 74 LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK-DRKVKA-KSIVFHRKKN--LQYYDIS 149 (385)
Q Consensus 74 ~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~-~~~~~~-~~~~~~~~~~--~~~~~~S 149 (385)
....++..+|++++|+|+++..++.....|+..+.. .+.|+++|+||+|+. ...... ....+....+ .+++++|
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 445677899999999999998777665555666554 478999999999987 443333 3334444443 6899999
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcC---------
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEM--------- 220 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------- 220 (385)
|+++.|+++++..|.+.+... ++.+++....|...+..+.+.+++.....+.++.|+......
T Consensus 163 A~~g~gv~~L~~~l~~~l~~~--------~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~ 234 (308)
T 3iev_A 163 ALKGANLDELVKTILKYLPEG--------EPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDAN 234 (308)
T ss_dssp TTTTBSHHHHHHHHHHHSCBC--------CCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSC
T ss_pred CCCCCCHHHHHHHHHHhCccC--------CCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCC
Confidence 999999999999999998654 346677788888899999999999999999999998755322
Q ss_pred -CCCeeEEEEECCCCCCHHHHH
Q psy125 221 -DMPSFKCVLVGDGGTGKTTFV 241 (385)
Q Consensus 221 -~~~~~~i~~~G~~~vgks~~~ 241 (385)
....+...++-...+-|..++
T Consensus 235 ~~~~~i~a~i~ve~~~~k~i~i 256 (308)
T 3iev_A 235 PNMLVIKGEIIVDRENLKPIII 256 (308)
T ss_dssp TTSEEEEEEEEESSGGGHHHHH
T ss_pred CCeEEEEEEEEEccCCcceEEE
Confidence 122344555555555554443
No 88
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.91 E-value=7.9e-23 Score=172.30 Aligned_cols=163 Identities=20% Similarity=0.302 Sum_probs=124.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCC-CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc-cccchhhhhccCc
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQ 83 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~-~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~-~~~~~~~~~~~~d 83 (385)
..+.+||+|+|++|||||||+|+|++... .....++.|.+........++..+.+.+|||+|... ...+...+++.+|
T Consensus 3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 35679999999999999999999886322 222233456665556667788888999999999875 4456677888999
Q ss_pred EEEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125 84 CAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 84 ~illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (385)
++++|||+++..+|+.+..|...+... ..+.|+++|+||+|+...+. ..+...++...+.+++++||+++.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 999999999999999888887776653 24789999999999865332 23334455666779999999999999999
Q ss_pred HHHHHHHHh
Q psy125 160 FLWLARKLI 168 (385)
Q Consensus 160 ~~~i~~~l~ 168 (385)
|..|++.+.
T Consensus 163 f~~l~~~~~ 171 (192)
T 2cjw_A 163 FEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 89
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=1.8e-23 Score=175.71 Aligned_cols=158 Identities=24% Similarity=0.435 Sum_probs=127.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+|+|++|||||||+|+|+++.+...+.++.+.+.... ....+.+.+|||||++.+...+..++.++|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 4579999999999999999999998888877788888765432 335788999999999988888889999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 159 (385)
+|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.......+...... .....++++||+++.|++++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT 175 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHH
Confidence 999999999998888888777652 36899999999999975422222222111 22347899999999999999
Q ss_pred HHHHHHHHh
Q psy125 160 FLWLARKLI 168 (385)
Q Consensus 160 ~~~i~~~l~ 168 (385)
+.+|++.+.
T Consensus 176 ~~~l~~~~~ 184 (188)
T 1zd9_A 176 LQWLIQHSK 184 (188)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHHH
Confidence 999988764
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.91 E-value=1.8e-23 Score=177.18 Aligned_cols=157 Identities=18% Similarity=0.257 Sum_probs=117.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
+..+.++|+++|++|||||||++++.++.+ ..+.++.+.+... ...+ ++.+.+|||||++.++..+..+++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~~~--~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 95 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEE--LTIA--GMTFTTFDLGGHIQARRVWKNYLPAING 95 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEE--EEET--TEEEEEEEECC----CCGGGGGGGGCSE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCC-CccCCCCCceeEE--EEEC--CEEEEEEECCCcHhhHHHHHHHHhcCCE
Confidence 446679999999999999999999776654 4566777766432 2233 3899999999999999888999999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh-----------------cCCeE
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----------------KNLQY 145 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~ 145 (385)
+++|+|++++.++..+..|+..+... ..+.|+++|+||+|+.......+...+... ...++
T Consensus 96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 96 IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 99999999999999888888877652 357999999999999753333334444331 23479
Q ss_pred EEEcCCCCCChHHHHHHHHHH
Q psy125 146 YDISAKSNYNFEKPFLWLARK 166 (385)
Q Consensus 146 ~~~Sa~~~~gi~~l~~~i~~~ 166 (385)
+++||+++.|+++++.+|++.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998764
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.91 E-value=1.2e-23 Score=175.57 Aligned_cols=155 Identities=21% Similarity=0.338 Sum_probs=122.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+|+|+++.+ ..+.++.|.+...... +++.+.+|||||++.+...+..++.++|+++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEE----TTEEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEE----CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999888776 6667777765543332 3488999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 159 (385)
+|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.......+..... ...+..++++||+++.|++++
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 999999999998888888777653 3689999999999996532222222222 122347999999999999999
Q ss_pred HHHHHHH
Q psy125 160 FLWLARK 166 (385)
Q Consensus 160 ~~~i~~~ 166 (385)
+.+|++.
T Consensus 174 ~~~l~~~ 180 (181)
T 2h17_A 174 LEWMMSR 180 (181)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 9988753
No 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.90 E-value=3.4e-23 Score=174.28 Aligned_cols=157 Identities=17% Similarity=0.260 Sum_probs=121.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
+..+.+||+++|++|||||||++++.++.+. .+.++.+.+... ...+ ++.+.+|||||++.++..+..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEE--LAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNG 93 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEE--EEET--TEEEEEEECCCSGGGTTSGGGGCTTCCE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEE--EEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3456789999999999999999998877654 566777765332 3333 4889999999999998888899999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh------------cCCeEEEEcC
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK------------KNLQYYDISA 150 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~Sa 150 (385)
+++|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.......+..+.... ...+++++||
T Consensus 94 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 94 IVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 99999999999999888888777652 367999999999999753323333333221 2347999999
Q ss_pred CCCCChHHHHHHHHHH
Q psy125 151 KSNYNFEKPFLWLARK 166 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~ 166 (385)
+++.|+++++.+|++.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.2e-23 Score=174.44 Aligned_cols=157 Identities=22% Similarity=0.397 Sum_probs=124.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCC-CCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~-~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
.+.+||+++|++|||||||+|+|+++. +...+.++.+..... .. ..++.+.+|||||++.+...+..++.++|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEK--FK--SSSLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEE--EE--CSSCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEE--EE--ECCEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 467999999999999999999988776 455666777644332 22 2358899999999999888889999999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCCh
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNF 156 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 156 (385)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.......+...... ..+..++++||+++.|+
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL 174 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence 99999999999988888887776632 4789999999999975433333433332 12458999999999999
Q ss_pred HHHHHHHHHHH
Q psy125 157 EKPFLWLARKL 167 (385)
Q Consensus 157 ~~l~~~i~~~l 167 (385)
++++.+|.+.+
T Consensus 175 ~~l~~~l~~~i 185 (190)
T 2h57_A 175 QEGVDWLQDQI 185 (190)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 94
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.90 E-value=1.1e-22 Score=167.83 Aligned_cols=158 Identities=20% Similarity=0.356 Sum_probs=124.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+|+|+++.+. .+.++.+.+...... ..+.+.+|||||++.+...+..++.++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTY----KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEE----TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEE----CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 35699999999999999999998887764 455666654433322 3688999999999998888889999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 159 (385)
+|+|++++.++.....|+..+... ..+.|+++|+||+|+.......+..... ...+.+++++||+++.|++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA 159 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence 999999999888887787776653 2588999999999997643222222211 223457999999999999999
Q ss_pred HHHHHHHHhc
Q psy125 160 FLWLARKLIG 169 (385)
Q Consensus 160 ~~~i~~~l~~ 169 (385)
+.+|++.+..
T Consensus 160 ~~~l~~~i~~ 169 (171)
T 1upt_A 160 MEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.90 E-value=3.7e-23 Score=172.66 Aligned_cols=157 Identities=18% Similarity=0.303 Sum_probs=122.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.++|+++|++|||||||+++++++ ....+.++.|.+..... . ..+.+.+|||||++.+...+..++.++|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~~~~--~--~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSVQ--S--QGFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEEEE--E--TTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999997665 44556777775543332 2 3688999999999988888888999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 159 (385)
+|+|++++.++..+..|+..+... ..+.|+++|+||+|+.......+...... ....+++++||+++.|++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDG 168 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHH
Confidence 999999999998887887776542 35789999999999975433222222211 12347899999999999999
Q ss_pred HHHHHHHHh
Q psy125 160 FLWLARKLI 168 (385)
Q Consensus 160 ~~~i~~~l~ 168 (385)
+.+|++.+.
T Consensus 169 ~~~l~~~~~ 177 (181)
T 1fzq_A 169 MNWVCKNVN 177 (181)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHHH
Confidence 999988753
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.90 E-value=6.9e-23 Score=172.72 Aligned_cols=159 Identities=20% Similarity=0.311 Sum_probs=118.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 84 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ 84 (385)
+..+.+||+++|++|||||||+++++.+.+. ...++.+.... ......+.+.+|||||++.+...+..++.++|+
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQG 99 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEE----EEEETTEEEEEEECC-----CTTHHHHHHTCCE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEE----EEEECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 4567899999999999999999998776654 34455553322 223356899999999999988888899999999
Q ss_pred EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChH
Q psy125 85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFE 157 (385)
Q Consensus 85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 157 (385)
+++|+|++++.++..+..|+..+... ..+.|+++|+||+|+.......+...... ....+++++||+++.|++
T Consensus 100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 100 LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 99999999999998888888777652 25789999999999965432222222111 123478999999999999
Q ss_pred HHHHHHHHHHh
Q psy125 158 KPFLWLARKLI 168 (385)
Q Consensus 158 ~l~~~i~~~l~ 168 (385)
+++.+|++.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 97
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.90 E-value=5e-23 Score=168.80 Aligned_cols=154 Identities=23% Similarity=0.326 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~ 89 (385)
+||+++|++|||||||+++++++.+.. +.++.+.... ......+.+.+|||||++.+...+..++.++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEE----EEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEE----EEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999988877653 4566663322 23345688999999999988888888999999999999
Q ss_pred eCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHHHHH
Q psy125 90 DVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 90 d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
|++++.++..+..|+..+.. ...+.|+++|+||+|+.......+...... ..+.+++++||+++.|+++++.+
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence 99999999888888877665 235789999999999965422222221111 12347899999999999999999
Q ss_pred HHHHHh
Q psy125 163 LARKLI 168 (385)
Q Consensus 163 i~~~l~ 168 (385)
|++.+.
T Consensus 156 l~~~i~ 161 (164)
T 1r8s_A 156 LSNQLR 161 (164)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 998764
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.90 E-value=1.1e-24 Score=184.99 Aligned_cols=162 Identities=30% Similarity=0.599 Sum_probs=130.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.+||+|+|++|||||||+|+|+++.+...+.++.+.+........+...+.+.+|||||++.+...+..++.++|++++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 111 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEE
Confidence 46999999999999999999988888877778888888888888888888999999999999998889999999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+. ......+....+.+++++||+++.|+++++.+|+
T Consensus 112 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~ 191 (199)
T 3l0i_B 112 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 191 (199)
T ss_dssp CC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999998888988876533 3789999999999865432 2234456677788999999999999999999998
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 192 ~~l~~ 196 (199)
T 3l0i_B 192 AEIKK 196 (199)
T ss_dssp TTTTT
T ss_pred HHHHH
Confidence 77643
No 99
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.89 E-value=1e-21 Score=166.51 Aligned_cols=164 Identities=31% Similarity=0.570 Sum_probs=135.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 85 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 85 (385)
....++|+|+|++|||||||+++|++..+...+.++.|.+.....+..++..+.+.+||++|++.++.....++..++++
T Consensus 2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 34568999999999999999999999888777778888777777777888889999999999998888888888999999
Q ss_pred EEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 86 IIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 86 llV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
++|+|+.+..++..+..|+..+.... .+.|+++++||+|+..... ......+.......++++|++++.|+++++..
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999888878887665532 4688999999999865332 33455677777889999999999999999999
Q ss_pred HHHHHhc
Q psy125 163 LARKLIG 169 (385)
Q Consensus 163 i~~~l~~ 169 (385)
|.+.+..
T Consensus 162 l~~~~~~ 168 (199)
T 2f9l_A 162 ILTEIYR 168 (199)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887743
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.89 E-value=3.8e-23 Score=173.05 Aligned_cols=161 Identities=20% Similarity=0.376 Sum_probs=117.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC--CCCCcccccceeeeEEEEEEe---CCeeEEEEEEeCCCccccccchhhhhccCc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHT---NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ 83 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~--~~~~~~~~~~g~t~~~~~~~~---~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d 83 (385)
.+||+|+|++|||||||+++|++. .+...+.++.|.+........ +...+.+.+|||+|++.+..+...++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999998874 344556677776655443332 235678999999999988888888899999
Q ss_pred EEEEEEeCCCh-hhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH-----HHHHHHHhcCCe----EEEEcCCCC
Q psy125 84 CAIIMFDVTSR-ITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA-----KSIVFHRKKNLQ----YYDISAKSN 153 (385)
Q Consensus 84 ~illV~d~~~~-~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~----~~~~Sa~~~ 153 (385)
++++|||++++ .++..+..|+..+.....+.|+++|+||+|+....... ....+....+.+ ++++||+++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 99999999997 47888888998887665689999999999987644321 122333334454 899999999
Q ss_pred C-ChHHHHHHHHHHHhc
Q psy125 154 Y-NFEKPFLWLARKLIG 169 (385)
Q Consensus 154 ~-gi~~l~~~i~~~l~~ 169 (385)
. ++++++..|.+.+..
T Consensus 162 ~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 162 SDALAKLRKTIINESLN 178 (184)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhc
Confidence 7 999999999887754
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=9e-23 Score=170.46 Aligned_cols=157 Identities=20% Similarity=0.296 Sum_probs=120.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.++|+++|++|||||||+++++++.+ ..+.++.|........ ..+.+.+|||||.+.+...+..++.++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEE----TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999776665 5666777755433322 3588999999999988888889999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh-----cCCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----KNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 159 (385)
+|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.......+....... ...+++++||+++.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 999999999998888888777653 367899999999998654322333222211 2337899999999999999
Q ss_pred HHHHHHHHh
Q psy125 160 FLWLARKLI 168 (385)
Q Consensus 160 ~~~i~~~l~ 168 (385)
+.+|.+.+.
T Consensus 171 ~~~l~~~~~ 179 (183)
T 1moz_A 171 LDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 102
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.89 E-value=2.1e-22 Score=170.34 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=116.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccccccch---hhhhcc
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLR---DGYYIQ 81 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~---~~~~~~ 81 (385)
..+.+||+++|++|||||||++++.+ .+........+.+......... ...+.+.+|||+|++.+.... ..++++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS-CCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh-cCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 35679999999999999999998554 4444432222223233333332 567899999999999887766 789999
Q ss_pred CcEEEEEEeCCCh--hhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---------hHHHHHHHH----hcCCeEE
Q psy125 82 GQCAIIMFDVTSR--ITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---------KAKSIVFHR----KKNLQYY 146 (385)
Q Consensus 82 ~d~illV~d~~~~--~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---------~~~~~~~~~----~~~~~~~ 146 (385)
+|++|+|||+++. .++..+..|+..+.....+.|+++|+||+|+..... ......+.. ..+..++
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 175 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFY 175 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceE
Confidence 9999999999997 555666667776655567899999999999765221 112334444 4566899
Q ss_pred EEcCCCCCChHHHHHHHHHHH
Q psy125 147 DISAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 147 ~~Sa~~~~gi~~l~~~i~~~l 167 (385)
++||++ .|++++|..|++.+
T Consensus 176 e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 176 LTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EECTTS-THHHHHHHHHHHHT
T ss_pred EEEech-hhHHHHHHHHHHHh
Confidence 999999 99999999998865
No 103
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=1.9e-22 Score=181.23 Aligned_cols=199 Identities=18% Similarity=0.105 Sum_probs=142.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc--------ccchhhh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF--------GGLRDGY 78 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~--------~~~~~~~ 78 (385)
.+..+|+|+|++|||||||+|+|++.... ..++.+++|+.........+...+.+|||||.... ......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~-ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA-PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCcee-eecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 56789999999999999999998876543 34455666766555444556789999999998753 2344567
Q ss_pred hccCcEEEEEEeCCChhhhhcHHHHH-HHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCCh
Q psy125 79 YIQGQCAIIMFDVTSRITYKNVPNWH-RDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNF 156 (385)
Q Consensus 79 ~~~~d~illV~d~~~~~~~~~~~~~~-~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (385)
+..+|++++|+|++++.+.. ..|+ ..+.....+.|+++|+||+|+..... ..+....+ ....+++++||+++.|+
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSALDERQV 160 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCTTCHHHH
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeCCCCCCH
Confidence 88999999999998864433 3444 33433334789999999999875433 21111111 23347899999999999
Q ss_pred HHHHHHHHHHHhcCCCcccccCCCCCCCCCC-CChhhhhhhHHhHHHHHHhcCCCCchhhhh
Q psy125 157 EKPFLWLARKLIGDPNLEFVAMPALLPPEVT-MDPQWQSRIEQDLKEAQETALPDDDEDLMA 217 (385)
Q Consensus 157 ~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~-~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 217 (385)
++++..|.+.+...+ +.+++... .|...+....+.+++...+.+.++.|+...
T Consensus 161 ~~l~~~l~~~l~~~~--------~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~ 214 (301)
T 1wf3_A 161 AELKADLLALMPEGP--------FFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVA 214 (301)
T ss_dssp HHHHHHHHTTCCBCC--------CSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCE
T ss_pred HHHHHHHHHhcccCC--------CCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEE
Confidence 999999988775543 23444444 566666678888899999999988887654
No 104
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.88 E-value=2.5e-22 Score=168.75 Aligned_cols=158 Identities=22% Similarity=0.312 Sum_probs=122.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+|+++.+.+. .+.++.+.+...... ..+.+.+|||||++.+...+..+++++|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQY----KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEE----TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEE----CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 46899999999999999999997766554 355666644333222 3688999999999998888888999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 159 (385)
+|+|++++.++..+..|+..+... ..+.|+++|+||+|+.......+..... ...+.+++++||+++.|++++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG 174 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence 999999999888887777776553 2578999999999997543222222211 122347999999999999999
Q ss_pred HHHHHHHHhc
Q psy125 160 FLWLARKLIG 169 (385)
Q Consensus 160 ~~~i~~~l~~ 169 (385)
+.+|.+.+..
T Consensus 175 ~~~l~~~i~~ 184 (189)
T 2x77_A 175 MDWLVERLRE 184 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 105
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.88 E-value=4.9e-21 Score=161.14 Aligned_cols=160 Identities=31% Similarity=0.577 Sum_probs=135.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..++|+|+|++|||||||+++|++..+...+.++.+.+.....+..++..+.+.+||++|.+.+...+..++..++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 35899999999999999999999988888888888888877778888888899999999999888888888899999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|+|+.+..+++++..|+..+... ..+.|+++++||+|+..... ......++......++++|++++.|+++++..|.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999998888887787766543 24678999999999865322 3445567777788999999999999999999998
Q ss_pred HHH
Q psy125 165 RKL 167 (385)
Q Consensus 165 ~~l 167 (385)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 106
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.87 E-value=3.5e-21 Score=176.43 Aligned_cols=162 Identities=27% Similarity=0.494 Sum_probs=134.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
..++|+++|.+|||||||+++++.+.+...+.++.+.... .....+...+.+.+|||||++.+......++.++|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE-EEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 4589999999999999999999988887777777775553 345667778899999999999998888999999999999
Q ss_pred EEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcCC-eEEEEcCC
Q psy125 88 MFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKNL-QYYDISAK 151 (385)
Q Consensus 88 V~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~Sa~ 151 (385)
|||++++.++..+. .|+..+.....+.|+++|+||+|+.... ...+...++...+. +++++||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 99999999998876 6777777666689999999999985421 12344556666666 89999999
Q ss_pred CCCChHHHHHHHHHHHhcC
Q psy125 152 SNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~l~~~ 170 (385)
++.|+++++..|.+.+...
T Consensus 313 ~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHhcC
Confidence 9999999999999987653
No 107
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=6.6e-22 Score=167.80 Aligned_cols=118 Identities=37% Similarity=0.629 Sum_probs=110.7
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.+|++.++....+.+++..+.+.||||||+++|..++..+++++|++|+
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 104 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999999988899999999988888889888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|++ |++|||++|.||+++|.+|+
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 105 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999876 89999999999999999999
Q ss_pred HHHhcC
Q psy125 335 RKLIGD 340 (385)
Q Consensus 335 ~~i~~~ 340 (385)
+.+...
T Consensus 185 ~~i~~~ 190 (201)
T 2ew1_A 185 CRLISE 190 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.87 E-value=1.7e-21 Score=159.99 Aligned_cols=154 Identities=17% Similarity=0.158 Sum_probs=109.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------chhhhhc
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYYI 80 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------~~~~~~~ 80 (385)
|+.++|+++|++|||||||+|+|++..+.... .++.+++.........+..+.+|||||+..+.. +...++.
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 35689999999999999999998876654333 334444333322222347899999999887642 2344554
Q ss_pred --cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125 81 --QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFE 157 (385)
Q Consensus 81 --~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (385)
+++++++|+|+++... ...|+..+.. .+.|+++|+||+|+..... ..+...+....+.+++++||+++.|++
T Consensus 79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 79 NEKPDLVVNIVDATALER---NLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp HHCCSEEEEEEETTCHHH---HHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred cCCCCEEEEEecCCchhH---hHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999988543 2346666554 4789999999999864322 112344566667899999999999999
Q ss_pred HHHHHHHHHH
Q psy125 158 KPFLWLARKL 167 (385)
Q Consensus 158 ~l~~~i~~~l 167 (385)
+++..|++.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 109
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.87 E-value=1.8e-21 Score=164.27 Aligned_cols=120 Identities=27% Similarity=0.464 Sum_probs=110.0
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.+|.+.++.. .+..++..+.+.||||||+++|..++..+++++|++|
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 356999999999999999999999999988999999877654 5677888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhh---------------------------------------------------hheeccccCCCchHHH
Q psy125 302 IMFDVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 302 lv~d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
+|||++++.||++ |++|||++|.||+++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHH
Confidence 9999999999877 7899999999999999
Q ss_pred HHHHHHHhcCCC
Q psy125 331 LWLARKLIGDPN 342 (385)
Q Consensus 331 ~~l~~~i~~~~~ 342 (385)
.+|++.+..++.
T Consensus 180 ~~l~~~i~~~~~ 191 (194)
T 3reg_A 180 EKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHCSCC
T ss_pred HHHHHHHHhcCC
Confidence 999999987654
No 110
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.87 E-value=7.5e-22 Score=169.29 Aligned_cols=120 Identities=23% Similarity=0.370 Sum_probs=105.7
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.|...+.+|++.++ ...+.+++..+.+.||||+|+++|..++..+++++|++|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 3579999999999999999999999999999999998776 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhh-------------------------------------------------------------hheecc
Q psy125 302 IMFDVTSRITYKN-------------------------------------------------------------YYDISA 320 (385)
Q Consensus 302 lv~d~~~~~s~~~-------------------------------------------------------------~~e~Sa 320 (385)
+|||++++.||++ |+||||
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 183 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEecc
Confidence 9999999999876 789999
Q ss_pred ccCCC-chHHHHHHHHHHhcCCC
Q psy125 321 KSNYN-FEKPFLWLARKLIGDPN 342 (385)
Q Consensus 321 k~~~~-v~~~f~~l~~~i~~~~~ 342 (385)
++|.| |+++|.+|++.+.....
T Consensus 184 ~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 184 FTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp TTCHHHHHHHHHHHHHHHHC---
T ss_pred CCCcccHHHHHHHHHHHHhccCc
Confidence 99998 99999999999986644
No 111
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.87 E-value=1.5e-21 Score=160.95 Aligned_cols=117 Identities=36% Similarity=0.601 Sum_probs=102.9
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999888889999988888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|++ |++|||++|.||+++|.+|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999876 89999999999999999999
Q ss_pred HHHhc
Q psy125 335 RKLIG 339 (385)
Q Consensus 335 ~~i~~ 339 (385)
+.+.+
T Consensus 165 ~~~~~ 169 (170)
T 1z08_A 165 KRMIE 169 (170)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98865
No 112
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.87 E-value=1.2e-21 Score=163.30 Aligned_cols=119 Identities=22% Similarity=0.303 Sum_probs=109.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+.++ ...+..++..+.+.+|||||+++|..++..+++++|++|+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 468999999999999999999998999999999998877 6677788888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|||++++.+|+. |++|||++|.||+++|.+|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 163 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Confidence 999999999987 8999999999999999999
Q ss_pred HHHHhcCCC
Q psy125 334 ARKLIGDPN 342 (385)
Q Consensus 334 ~~~i~~~~~ 342 (385)
++.+.....
T Consensus 164 ~~~~~~~~~ 172 (181)
T 3t5g_A 164 ILEAEKMDG 172 (181)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHhcC
Confidence 999987654
No 113
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.78 E-value=8.2e-24 Score=180.20 Aligned_cols=160 Identities=29% Similarity=0.510 Sum_probs=126.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+++|++|||||||+++|+.+.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 35799999999999999999998887776666666654442 23344556788889999999998888888999999999
Q ss_pred EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEEcC
Q psy125 87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDISA 150 (385)
Q Consensus 87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~Sa 150 (385)
+|+|++++.+++.+. .|+..+.....+.|+++|+||+|+..... ..+...++...+. +++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 999999999988876 67777665545889999999999865321 1223344455555 8899999
Q ss_pred CCCCChHHHHHHHHHHH
Q psy125 151 KSNYNFEKPFLWLARKL 167 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l 167 (385)
+++.|+++++..|++.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999988764
No 114
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.87 E-value=9.6e-22 Score=163.37 Aligned_cols=120 Identities=26% Similarity=0.419 Sum_probs=109.7
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC-eeEEEEEeeCCCccccCcccccccccCcEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 300 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 300 (385)
...+||+++|.+|||||+|++++..+.+...+.+|+|.++....+.+++ ..+.+.+|||||++++..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 3569999999999999999999999888888889998888888888776 578899999999999999999999999999
Q ss_pred EEEEeCCChhhhhh---------------------------------------------------hheeccccCCCchHH
Q psy125 301 IIMFDVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 301 ilv~d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
|+|||++++.+|++ |++|||++|.||+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 99999999999876 799999999999999
Q ss_pred HHHHHHHHhcCC
Q psy125 330 FLWLARKLIGDP 341 (385)
Q Consensus 330 f~~l~~~i~~~~ 341 (385)
|.+|++.+.+.+
T Consensus 164 ~~~l~~~~~~~~ 175 (178)
T 2hxs_A 164 FQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
No 115
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.87 E-value=8.1e-22 Score=162.37 Aligned_cols=117 Identities=32% Similarity=0.603 Sum_probs=109.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 46899999999999999999999999988899999999988888888889999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|++ |++|||++|.||+++|.+|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~ 164 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999877 79999999999999999999
Q ss_pred HHHhc
Q psy125 335 RKLIG 339 (385)
Q Consensus 335 ~~i~~ 339 (385)
+.+.+
T Consensus 165 ~~~~~ 169 (170)
T 1r2q_A 165 KKLPK 169 (170)
T ss_dssp HTSCC
T ss_pred HHHhh
Confidence 87743
No 116
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.86 E-value=9.8e-22 Score=165.47 Aligned_cols=119 Identities=29% Similarity=0.565 Sum_probs=106.5
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999998888899988888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
+|||++++.+|++ |++|||++|.||+++|.+|
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 178 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 178 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999887 7999999999999999999
Q ss_pred HHHHhcC
Q psy125 334 ARKLIGD 340 (385)
Q Consensus 334 ~~~i~~~ 340 (385)
++.+.+.
T Consensus 179 ~~~i~~~ 185 (191)
T 2a5j_A 179 AKEIYRK 185 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
No 117
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.86 E-value=3e-22 Score=167.35 Aligned_cols=118 Identities=31% Similarity=0.627 Sum_probs=83.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|++++..+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 46899999999999999999999888888888999988888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.||++ |++|||++|.||+++|.+|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999876 89999999999999999999
Q ss_pred HHHhcC
Q psy125 335 RKLIGD 340 (385)
Q Consensus 335 ~~i~~~ 340 (385)
+.+..+
T Consensus 167 ~~i~~~ 172 (183)
T 2fu5_C 167 RDIKAK 172 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 118
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=177.05 Aligned_cols=158 Identities=22% Similarity=0.304 Sum_probs=118.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
.+.+||+|+|++|||||||+++|+++.+... .++.+... .......+.+.+|||||++.+...+..++.++|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~----~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE----EEEEETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE----EEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4568999999999999999999877665433 34444333 333446689999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh-----cCCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----KNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 159 (385)
+|||++++.++..+..++..+... ..+.|+++|+||+|+.......+....... .+.+++++||+++.|++++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el 317 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 317 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence 999999999998887777666552 258899999999999764433333322222 2347999999999999999
Q ss_pred HHHHHHHHhc
Q psy125 160 FLWLARKLIG 169 (385)
Q Consensus 160 ~~~i~~~l~~ 169 (385)
+..|++.+..
T Consensus 318 ~~~l~~~l~~ 327 (329)
T 3o47_A 318 LDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 119
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.86 E-value=7.1e-22 Score=167.75 Aligned_cols=120 Identities=36% Similarity=0.582 Sum_probs=102.1
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.+|++.++....+.+++..+.+.||||||+++|..++..+++++|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 34689999999999999999999999998888999988888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHH
Q psy125 302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
+|||++++.+|++ |++|||++|.||+++|.+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999876 699999999999999999
Q ss_pred HHHHHhcCC
Q psy125 333 LARKLIGDP 341 (385)
Q Consensus 333 l~~~i~~~~ 341 (385)
|++.+..+.
T Consensus 187 l~~~i~~~~ 195 (201)
T 2hup_A 187 VATELIMRH 195 (201)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999997654
No 120
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=1.1e-21 Score=161.49 Aligned_cols=116 Identities=32% Similarity=0.602 Sum_probs=108.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|.+|||||+|+++++.+.+...+.+++|.++....+.+++..+.+.+|||||++++..++..+++++|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 58999999999999999999999999888999999999888888888889999999999999999999999999999999
Q ss_pred EeCCChhhhhh---------------------------------------------------hheeccccCCCchHHHHH
Q psy125 304 FDVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 304 ~d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
||++++.+|++ |++|||++|.||+++|.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG 162 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999876 899999999999999999
Q ss_pred HHHHHhc
Q psy125 333 LARKLIG 339 (385)
Q Consensus 333 l~~~i~~ 339 (385)
|++.+.+
T Consensus 163 l~~~i~~ 169 (170)
T 1ek0_A 163 IGEKIPL 169 (170)
T ss_dssp HHTTSCC
T ss_pred HHHHHhh
Confidence 9987643
No 121
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=2e-21 Score=160.02 Aligned_cols=117 Identities=29% Similarity=0.544 Sum_probs=109.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+...+..+.+.+|||||++++..++..+++++|++|+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 45899999999999999999999999988999999999988888889888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|++ |++|||++|.||+++|.+|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 164 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 164 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 999999999877 89999999999999999999
Q ss_pred HHHhc
Q psy125 335 RKLIG 339 (385)
Q Consensus 335 ~~i~~ 339 (385)
+.+.+
T Consensus 165 ~~i~~ 169 (170)
T 1z0j_A 165 RRIPS 169 (170)
T ss_dssp HHCCC
T ss_pred HHHhc
Confidence 98753
No 122
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.86 E-value=4e-21 Score=159.58 Aligned_cols=161 Identities=15% Similarity=0.161 Sum_probs=116.2
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccC
Q psy125 3 AEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQG 82 (385)
Q Consensus 3 ~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 82 (385)
+.+..+.++|+++|++|||||||+++|+++.+.....++.+.+......... +..+.+|||||++.+...+..++..+
T Consensus 2 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (178)
T 2lkc_A 2 SHMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN--DKKITFLDTPGHEAFTTMRARGAQVT 79 (178)
T ss_dssp CTTCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET--TEEEEESCCCSSSSSSCSCCSSCCCC
T ss_pred CCcCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC--CceEEEEECCCCHHHHHHHHHHHhhC
Confidence 4566778999999999999999999998887766555554444433334433 35678999999999888888889999
Q ss_pred cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhc-------C--CeEEEEcCCCC
Q psy125 83 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-------N--LQYYDISAKSN 153 (385)
Q Consensus 83 d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~ 153 (385)
|++++|+|+++....... .++..+. ..+.|+++|+||+|+..... .+........ + .+++++||+++
T Consensus 80 d~~i~v~d~~~~~~~~~~-~~l~~~~--~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 80 DIVILVVAADDGVMPQTV-EAINHAK--AANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp CEEEEEEETTCCCCHHHH-HHHHHHG--GGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred CEEEEEEECCCCCcHHHH-HHHHHHH--hCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 999999999885332221 2222222 24789999999999875321 1112122111 1 47999999999
Q ss_pred CChHHHHHHHHHHHhc
Q psy125 154 YNFEKPFLWLARKLIG 169 (385)
Q Consensus 154 ~gi~~l~~~i~~~l~~ 169 (385)
.|+++++.+|++.+..
T Consensus 156 ~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhh
Confidence 9999999999987654
No 123
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=163.74 Aligned_cols=119 Identities=30% Similarity=0.611 Sum_probs=112.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+.++....+..++..+.+.||||||++++..++..+++++|++|+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence 46899999999999999999999999999999999999998999999888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|+. |++|||++|.||+++|.+|+
T Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 999999999877 89999999999999999999
Q ss_pred HHHhcCC
Q psy125 335 RKLIGDP 341 (385)
Q Consensus 335 ~~i~~~~ 341 (385)
+.+.+..
T Consensus 175 ~~i~~~~ 181 (196)
T 3tkl_A 175 AEIKKRM 181 (196)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9997654
No 124
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.86 E-value=4.2e-21 Score=161.27 Aligned_cols=117 Identities=27% Similarity=0.563 Sum_probs=109.9
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+..++..+.+.||||||++++..++..+++++|++|+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 46899999999999999999999999988889999999988888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|+. |++|||++|.||+++|.+|+
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999877 89999999999999999999
Q ss_pred HHHhc
Q psy125 335 RKLIG 339 (385)
Q Consensus 335 ~~i~~ 339 (385)
+.+.+
T Consensus 181 ~~i~~ 185 (189)
T 2gf9_A 181 DVICE 185 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
No 125
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=172.86 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=115.9
Q ss_pred CCCceEEEEEcCC---------CCcHHHHHHHHhc---CCCCCcccccc-eeeeEEEE--------------EEeCCeeE
Q psy125 6 DMPSFKCVLVGDG---------GTGKTTFVKRHLT---GEFEKKYVATL-GVEVHPLV--------------FHTNRGAI 58 (385)
Q Consensus 6 ~~~~~~i~lvG~~---------g~GKSTLin~ll~---~~~~~~~~~~~-g~t~~~~~--------------~~~~~~~~ 58 (385)
.++.+||+|+|.+ |||||||+|+|++ +.+...+.++. +..+.... ...+...+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3567999999999 9999999999888 44444444443 22211111 11345678
Q ss_pred EEEEEe-----------------------CCCccccccchhhhhc---------------------cCcEEEEEEeCCCh
Q psy125 59 RFNVWD-----------------------TAGQEKFGGLRDGYYI---------------------QGQCAIIMFDVTSR 94 (385)
Q Consensus 59 ~~~i~D-----------------------t~g~~~~~~~~~~~~~---------------------~~d~illV~d~~~~ 94 (385)
.+.+|| ++|++.+..++..++. ++|++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 5555555555566665 79999999999998
Q ss_pred --hhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh-cCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125 95 --ITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK-KNLQYYDISAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 95 --~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~~l 167 (385)
.+++.+..|+..+... ..+.|+++|+||+|+...+...+...++.. .+.+++++||+++.|+++++..|++.+
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 8999888888877653 368999999999999765444455556654 467999999999999999999998876
No 126
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.86 E-value=2.3e-21 Score=162.12 Aligned_cols=114 Identities=21% Similarity=0.381 Sum_probs=102.2
Q ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcE
Q psy125 220 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 299 (385)
Q Consensus 220 ~~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 299 (385)
.....+||+++|.+|||||+|+++++.+.|...+.+|.+ .+ ...+.+++..+.+.||||+|+++|. |++++|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 345689999999999999999999999999888888843 33 4777888889999999999999886 8899999
Q ss_pred EEEEEeCCChhhhhh----------------------------------------------------hheeccccCCCch
Q psy125 300 AIIMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFE 327 (385)
Q Consensus 300 ~ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~ 327 (385)
+|+|||++++.||++ |++|||++|.||+
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence 999999999999988 8999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy125 328 KPFLWLARKLIGD 340 (385)
Q Consensus 328 ~~f~~l~~~i~~~ 340 (385)
++|.+|++.+.+.
T Consensus 169 ~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 169 RVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 127
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.86 E-value=3.3e-21 Score=158.43 Aligned_cols=117 Identities=33% Similarity=0.652 Sum_probs=109.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999999988899999888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 303 MFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 303 v~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
|||++++.+|++ |++|||++|.||+++|.+|++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 163 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence 999999999876 899999999999999999999
Q ss_pred HHhc
Q psy125 336 KLIG 339 (385)
Q Consensus 336 ~i~~ 339 (385)
.+.+
T Consensus 164 ~~~~ 167 (168)
T 1z2a_A 164 KHLQ 167 (168)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8864
No 128
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.86 E-value=6.4e-21 Score=165.14 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=112.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc----c-----cchhh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF----G-----GLRDG 77 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~----~-----~~~~~ 77 (385)
...++|+|+|++|||||||+|+|+++.+. ..+..+.|..............+.+|||||+... . .....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD--VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE--EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 46799999999999999999998877654 2334444555444443334578999999998321 1 11234
Q ss_pred hhccCcEEEEEEeCCChhhhhc--HHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh-----HHHHHHHHhcC--CeEEEE
Q psy125 78 YYIQGQCAIIMFDVTSRITYKN--VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-----AKSIVFHRKKN--LQYYDI 148 (385)
Q Consensus 78 ~~~~~d~illV~d~~~~~~~~~--~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~--~~~~~~ 148 (385)
++..+|++|+|+|++++.++.. ...|+..+.....+.|+++|+||+|+...... .....+....+ .+++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 5678899999999999877652 22455555543358999999999998654321 13344555555 789999
Q ss_pred cCCCCCChHHHHHHHHHHHhc
Q psy125 149 SAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
||+++.|+++++..|++.+..
T Consensus 185 SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998743
No 129
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=162.00 Aligned_cols=119 Identities=30% Similarity=0.541 Sum_probs=110.6
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.+++|.++....+.+++..+.+.||||||++++..++..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 34699999999999999999999999998888999999998888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
+|||++++.+|+. |++|||++|.||+++|.+|
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999876 7999999999999999999
Q ss_pred HHHHhcC
Q psy125 334 ARKLIGD 340 (385)
Q Consensus 334 ~~~i~~~ 340 (385)
++.+.++
T Consensus 183 ~~~i~~~ 189 (193)
T 2oil_A 183 LKEIFAK 189 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 130
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.86 E-value=4.8e-21 Score=159.45 Aligned_cols=118 Identities=31% Similarity=0.609 Sum_probs=108.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++++|++|+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 87 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 87 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999988888889999989988888889888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 303 MFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 303 v~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
|||++++.+|++ |++|||++|.||+++|.+|++
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (181)
T 3tw8_B 88 VYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITE 167 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999987 799999999999999999999
Q ss_pred HHhcC
Q psy125 336 KLIGD 340 (385)
Q Consensus 336 ~i~~~ 340 (385)
.+...
T Consensus 168 ~~~~~ 172 (181)
T 3tw8_B 168 LVLRA 172 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 131
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.8e-21 Score=162.20 Aligned_cols=120 Identities=31% Similarity=0.580 Sum_probs=112.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 46899999999999999999999999988999999999988888889889999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|++ |++|||++|.||+++|.+|+
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV 173 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999998876 79999999999999999999
Q ss_pred HHHhcCCC
Q psy125 335 RKLIGDPN 342 (385)
Q Consensus 335 ~~i~~~~~ 342 (385)
+.+...+.
T Consensus 174 ~~~~~~~~ 181 (195)
T 1x3s_A 174 EKIIQTPG 181 (195)
T ss_dssp HHHHTSGG
T ss_pred HHHHhhhh
Confidence 99987543
No 132
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.86 E-value=4.4e-21 Score=160.17 Aligned_cols=118 Identities=31% Similarity=0.519 Sum_probs=108.7
Q ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125 221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 300 (385)
Q Consensus 221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 300 (385)
....+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+..++..+.+.+|||||++++..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34679999999999999999999999999999999988776 66777888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhh-------------------------------------------------hheeccc-cCCCchHHH
Q psy125 301 IIMFDVTSRITYKN-------------------------------------------------YYDISAK-SNYNFEKPF 330 (385)
Q Consensus 301 ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak-~~~~v~~~f 330 (385)
|+|||++++.||++ |++|||+ +|.||+++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHH
Confidence 99999999999877 8999999 999999999
Q ss_pred HHHHHHHhc
Q psy125 331 LWLARKLIG 339 (385)
Q Consensus 331 ~~l~~~i~~ 339 (385)
.+|++.+.+
T Consensus 174 ~~l~~~i~~ 182 (183)
T 3kkq_A 174 HDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998864
No 133
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=165.52 Aligned_cols=117 Identities=32% Similarity=0.582 Sum_probs=100.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 106 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL 106 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence 46999999999999999999999999988899999999988888899988999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------------hheeccccCCCchH
Q psy125 303 MFDVTSRITYKN------------------------------------------------------YYDISAKSNYNFEK 328 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v~~ 328 (385)
|||++++.+|++ |++|||++|.||++
T Consensus 107 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 107 LYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE 186 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence 999999999877 78999999999999
Q ss_pred HHHHHHHHHhc
Q psy125 329 PFLWLARKLIG 339 (385)
Q Consensus 329 ~f~~l~~~i~~ 339 (385)
+|.+|++.+.+
T Consensus 187 l~~~l~~~i~~ 197 (199)
T 2p5s_A 187 AVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 134
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.86 E-value=4e-21 Score=159.44 Aligned_cols=118 Identities=32% Similarity=0.666 Sum_probs=106.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.|.++....+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 85 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence 46899999999999999999999999988899999999888888889888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||++++.+|++ |++|||++|.||+++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHH
Confidence 999999998865 8999999999999999
Q ss_pred HHHHHHHhcC
Q psy125 331 LWLARKLIGD 340 (385)
Q Consensus 331 ~~l~~~i~~~ 340 (385)
.+|++.+.+.
T Consensus 166 ~~l~~~~~~~ 175 (177)
T 1wms_A 166 EEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 135
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=164.51 Aligned_cols=119 Identities=29% Similarity=0.594 Sum_probs=103.4
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.+|||||++++..++..+++++|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999988888888999998998888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHH
Q psy125 302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
+|||++++.+|++ |++|||++|.||+++|.+
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 183 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK 183 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999976 789999999999999999
Q ss_pred HHHHHhcC
Q psy125 333 LARKLIGD 340 (385)
Q Consensus 333 l~~~i~~~ 340 (385)
|++.+.++
T Consensus 184 l~~~i~~~ 191 (192)
T 2il1_A 184 LVDDILKK 191 (192)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998653
No 136
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=2.6e-21 Score=160.73 Aligned_cols=118 Identities=32% Similarity=0.594 Sum_probs=109.6
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++|
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 35699999999999999999999999998889999998988888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
+|||++++.+|++ |++|||++|.||+++|.+|
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999876 7999999999999999999
Q ss_pred HHHHhc
Q psy125 334 ARKLIG 339 (385)
Q Consensus 334 ~~~i~~ 339 (385)
++.+.+
T Consensus 173 ~~~i~~ 178 (179)
T 1z0f_A 173 AKKIYQ 178 (179)
T ss_dssp HHHHC-
T ss_pred HHHHhh
Confidence 998864
No 137
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=161.71 Aligned_cols=116 Identities=18% Similarity=0.289 Sum_probs=101.8
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.|...+.+|++.++ ...+.+++..+.+.||||+|++++..+ ..|++++|++|
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 4579999999999999999999999999999999998776 455677888899999999999999886 67999999999
Q ss_pred EEEeCCChhhhhh---------------------------------------------------hheecc-ccCCCchHH
Q psy125 302 IMFDVTSRITYKN---------------------------------------------------YYDISA-KSNYNFEKP 329 (385)
Q Consensus 302 lv~d~~~~~s~~~---------------------------------------------------~~e~Sa-k~~~~v~~~ 329 (385)
+|||++++.||++ |++||| ++|.||+++
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~l 176 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV 176 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHH
Confidence 9999999999986 899999 899999999
Q ss_pred HHHHHHHHhc
Q psy125 330 FLWLARKLIG 339 (385)
Q Consensus 330 f~~l~~~i~~ 339 (385)
|.+|++.+.+
T Consensus 177 f~~l~~~i~~ 186 (187)
T 3c5c_A 177 FHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999998854
No 138
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.8e-21 Score=165.96 Aligned_cols=123 Identities=30% Similarity=0.534 Sum_probs=104.4
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||+++|..++..+++++|++|+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vil 91 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALI 91 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999988889999988888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|++ |++|||++|.||+++|.+|+
T Consensus 92 V~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 92 VYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171 (223)
T ss_dssp EEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999886 88999999999999999999
Q ss_pred HHHhcCCCccc
Q psy125 335 RKLIGDPNLEF 345 (385)
Q Consensus 335 ~~i~~~~~~~~ 345 (385)
+.+........
T Consensus 172 ~~i~~~~~~~~ 182 (223)
T 3cpj_B 172 NTIYQKVSKHQ 182 (223)
T ss_dssp HHHTTCC----
T ss_pred HHHHHHhhhcc
Confidence 99987655433
No 139
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.86 E-value=2.6e-21 Score=166.39 Aligned_cols=134 Identities=55% Similarity=0.909 Sum_probs=116.7
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCe-eEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+.+.....+...+. .+.+.||||||++++..++..+++++|++|
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence 5699999999999999999999988898888999988887777665543 488999999999999999999999999999
Q ss_pred EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
+|||++++.+|++ |++|||++|.||+++|.+|
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 169 (218)
T 4djt_A 90 LFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169 (218)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999887 8999999999999999999
Q ss_pred HHHHhcCCCcccccCCCCCCCcc
Q psy125 334 ARKLIGDPNLEFVAMPALLPPEV 356 (385)
Q Consensus 334 ~~~i~~~~~~~~~~~~~~~~~~~ 356 (385)
++.+...............++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~ 192 (218)
T 4djt_A 170 ARIFTGRPDLIFVSNVNLEPTEV 192 (218)
T ss_dssp HHHHHCCTTCCBCSCCCCCBCCC
T ss_pred HHHHhcccccccccccCcCCCcc
Confidence 99999887766555444444433
No 140
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.86 E-value=7.4e-21 Score=163.06 Aligned_cols=157 Identities=19% Similarity=0.265 Sum_probs=108.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCcccccc-chhhhhccCcE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGG-LRDGYYIQGQC 84 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~-~~~~~~~~~d~ 84 (385)
.+.+||+++|++|||||||+++|+++.+...+.++. .... ....+.. .+.+.+|||||++.+.. .+..+++++|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 457899999999999999999999888766554332 2222 2444433 68999999999998877 67788999999
Q ss_pred EEEEEeCCChh-hhhcHHHHHH-HHHH---hcCCCCEEEEEeCCCCcchhhhHHHH----HHHH----------------
Q psy125 85 AIIMFDVTSRI-TYKNVPNWHR-DLVR---VCENIPIVLCGNKVDIKDRKVKAKSI----VFHR---------------- 139 (385)
Q Consensus 85 illV~d~~~~~-~~~~~~~~~~-~l~~---~~~~~~~ilv~nK~Dl~~~~~~~~~~----~~~~---------------- 139 (385)
+|+|+|+++.. .+.....++. .+.. ...+.|+++|+||+|+.......... ....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 3444433333 3322 12468999999999986543211111 1111
Q ss_pred -----------------hc--CCeEEEEcCCCC------CChHHHHHHHHHH
Q psy125 140 -----------------KK--NLQYYDISAKSN------YNFEKPFLWLARK 166 (385)
Q Consensus 140 -----------------~~--~~~~~~~Sa~~~------~gi~~l~~~i~~~ 166 (385)
.. ...++++||+++ .|+++++.+|++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 00 457999999999 9999999999875
No 141
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=164.96 Aligned_cols=120 Identities=22% Similarity=0.327 Sum_probs=105.4
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+.++ ...+..++..+.+.||||||++++..++..+++++|++|+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 579999999999999999999999999999999988776 5666667778899999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|||++++.+|+. |++|||++|.||+++|.+|
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 999999999977 8999999999999999999
Q ss_pred HHHHhcCCCc
Q psy125 334 ARKLIGDPNL 343 (385)
Q Consensus 334 ~~~i~~~~~~ 343 (385)
++.+.+....
T Consensus 182 ~~~i~~~~~~ 191 (201)
T 3oes_A 182 IQEIARVENS 191 (201)
T ss_dssp HHHHHHC---
T ss_pred HHHHHhhhhh
Confidence 9999876543
No 142
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2.3e-21 Score=163.36 Aligned_cols=118 Identities=30% Similarity=0.508 Sum_probs=109.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 101 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI 101 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEE
Confidence 46999999999999999999999999888899999999998888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|++ |++|||++|.||+++|.+|+
T Consensus 102 V~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (192)
T 2fg5_A 102 VYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181 (192)
T ss_dssp EEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 999999999876 79999999999999999999
Q ss_pred HHHhcC
Q psy125 335 RKLIGD 340 (385)
Q Consensus 335 ~~i~~~ 340 (385)
+.+.+.
T Consensus 182 ~~i~~~ 187 (192)
T 2fg5_A 182 RQIPPL 187 (192)
T ss_dssp HTCC--
T ss_pred HHHHhh
Confidence 987554
No 143
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.85 E-value=3.6e-21 Score=161.11 Aligned_cols=118 Identities=31% Similarity=0.618 Sum_probs=110.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 88 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 88 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999999988889999888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|++ |++|||++|.||+++|.+|+
T Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 89 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999876 89999999999999999999
Q ss_pred HHHhcC
Q psy125 335 RKLIGD 340 (385)
Q Consensus 335 ~~i~~~ 340 (385)
+.+.+.
T Consensus 169 ~~~~~~ 174 (186)
T 2bme_A 169 RKILNK 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 144
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.85 E-value=2.8e-21 Score=160.99 Aligned_cols=119 Identities=34% Similarity=0.574 Sum_probs=109.6
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 35689999999999999999999999998888899998888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
+|||++++.+|+. |++|||++|.||+++|.+|
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999877 8999999999999999999
Q ss_pred HHHHhcC
Q psy125 334 ARKLIGD 340 (385)
Q Consensus 334 ~~~i~~~ 340 (385)
++.+...
T Consensus 170 ~~~~~~~ 176 (181)
T 2efe_B 170 ARRLPRV 176 (181)
T ss_dssp HHTCC--
T ss_pred HHHHHhc
Confidence 9987654
No 145
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.85 E-value=5.1e-21 Score=163.04 Aligned_cols=120 Identities=29% Similarity=0.594 Sum_probs=111.9
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|++++..+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vil 86 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 86 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEE
Confidence 46899999999999999999999999988899999999888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|+. |++|||++|.||+++|.+|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 87 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999876 89999999999999999999
Q ss_pred HHHhcCCC
Q psy125 335 RKLIGDPN 342 (385)
Q Consensus 335 ~~i~~~~~ 342 (385)
+.+.....
T Consensus 167 ~~i~~~~~ 174 (206)
T 2bcg_Y 167 RQIKESMS 174 (206)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 99987543
No 146
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.85 E-value=9.9e-21 Score=159.73 Aligned_cols=155 Identities=13% Similarity=0.168 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCC----------ccccccchh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG----------QEKFGGLRD 76 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g----------~~~~~~~~~ 76 (385)
...++|+|+|++|||||||+|+|+++.+...+.+++|.|+.......+. .+.+||||| .+.+.....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 3568999999999999999999988877777888888888777665543 589999999 444445556
Q ss_pred hhhccC---cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH----HHHH-HHHhcCCeEEEE
Q psy125 77 GYYIQG---QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----KSIV-FHRKKNLQYYDI 148 (385)
Q Consensus 77 ~~~~~~---d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~----~~~~-~~~~~~~~~~~~ 148 (385)
.++..+ |++++|+|+++..++.... +...+.. .+.|+++|+||+|+....... +... +......+++++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF 174 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEE
Confidence 666666 9999999999876665421 2222222 578999999999987654322 2222 222235689999
Q ss_pred cCCCCCChHHHHHHHHHHH
Q psy125 149 SAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l 167 (385)
||+++.|+++++.+|.+.+
T Consensus 175 Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 175 SSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred EccCCCCHHHHHHHHHHHh
Confidence 9999999999999998876
No 147
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.85 E-value=5.1e-21 Score=157.13 Aligned_cols=115 Identities=29% Similarity=0.493 Sum_probs=104.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
+.+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999999999888889987665 3556778888899999999999999999999999999999
Q ss_pred EEeCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHH
Q psy125 303 MFDVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 303 v~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|||++++.||++ |++|||++|.||+++|.+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999887 789999999999999999
Q ss_pred HHHHHh
Q psy125 333 LARKLI 338 (385)
Q Consensus 333 l~~~i~ 338 (385)
|++.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999874
No 148
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.85 E-value=5.5e-21 Score=162.42 Aligned_cols=118 Identities=28% Similarity=0.571 Sum_probs=110.4
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+..++..+.+.||||||++++..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 45899999999999999999999999888889999999988888888889999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|+. |++|||++|.||+++|.+|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999876 79999999999999999999
Q ss_pred HHHhcC
Q psy125 335 RKLIGD 340 (385)
Q Consensus 335 ~~i~~~ 340 (385)
+.+.++
T Consensus 167 ~~i~~~ 172 (203)
T 1zbd_A 167 DVICEK 172 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 149
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=4e-22 Score=167.84 Aligned_cols=119 Identities=26% Similarity=0.554 Sum_probs=111.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+..++..+.+.||||||++++..++..+++++|++|+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 46899999999999999999999999888999999999998888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|+. |++|||++|.||+++|.+|+
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999987 89999999999999999999
Q ss_pred HHHhcCC
Q psy125 335 RKLIGDP 341 (385)
Q Consensus 335 ~~i~~~~ 341 (385)
+.+.+..
T Consensus 182 ~~i~~~~ 188 (191)
T 3dz8_A 182 DAICDKM 188 (191)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9987653
No 150
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.85 E-value=4.4e-21 Score=158.00 Aligned_cols=117 Identities=29% Similarity=0.605 Sum_probs=102.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|.+|||||+|+++++.+.+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 58999999999999999999999998888889988888888888888888999999999999999999999999999999
Q ss_pred EeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 304 FDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 304 ~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
||++++.+|++ |++|||++|.||+++|.+|++.
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 162 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999876 8999999999999999999999
Q ss_pred HhcC
Q psy125 337 LIGD 340 (385)
Q Consensus 337 i~~~ 340 (385)
+.++
T Consensus 163 ~~~~ 166 (170)
T 1g16_A 163 IQEK 166 (170)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8764
No 151
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.85 E-value=6.5e-21 Score=158.65 Aligned_cols=119 Identities=28% Similarity=0.508 Sum_probs=108.1
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.++.+..+. ..+..++..+.+.+|||||++++..++..+++++|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 35689999999999999999999999998889999887765 66677888889999999999999999999999999999
Q ss_pred EEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHH
Q psy125 302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
+|||++++.+|+. |++|||++|.||+++|.+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999998876 799999999999999999
Q ss_pred HHHHHhcCC
Q psy125 333 LARKLIGDP 341 (385)
Q Consensus 333 l~~~i~~~~ 341 (385)
|++.+.+..
T Consensus 166 l~~~~~~~~ 174 (181)
T 2fn4_A 166 LVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999987643
No 152
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=163.88 Aligned_cols=118 Identities=32% Similarity=0.624 Sum_probs=99.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 103 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 103 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEE
Confidence 46999999999999999999999998888888999888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|++ |++|||++|.||+++|.+|+
T Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 104 VYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999887 79999999999999999999
Q ss_pred HHHhcC
Q psy125 335 RKLIGD 340 (385)
Q Consensus 335 ~~i~~~ 340 (385)
+.+..+
T Consensus 184 ~~i~~~ 189 (200)
T 2o52_A 184 RTILNK 189 (200)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 153
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=163.32 Aligned_cols=120 Identities=23% Similarity=0.262 Sum_probs=102.3
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc-ccccccccCcEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-LRDGYYIQGQCA 300 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~ 300 (385)
...+||+++|.+|||||+|++++....+...+.++.+.+.....+.+++..+.+.+|||+|++++.. ++..|+++++++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 3569999999999999999999865444334445555666677778888899999999999998775 788899999999
Q ss_pred EEEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHH
Q psy125 301 IIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFL 331 (385)
Q Consensus 301 ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~ 331 (385)
|+|||++++.||++ |+||||++|.||+++|.
T Consensus 101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~ 180 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 180 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHH
Confidence 99999999999987 89999999999999999
Q ss_pred HHHHHHhcCC
Q psy125 332 WLARKLIGDP 341 (385)
Q Consensus 332 ~l~~~i~~~~ 341 (385)
+|++.+....
T Consensus 181 ~l~~~i~~~~ 190 (195)
T 3cbq_A 181 GAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhc
Confidence 9999987643
No 154
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.1e-20 Score=157.18 Aligned_cols=119 Identities=31% Similarity=0.649 Sum_probs=100.6
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccc-cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 300 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 300 (385)
...+||+++|.+|||||+|+++++.+.+. ..+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 35689999999999999999999988874 46788888888888878888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHH
Q psy125 301 IIMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 301 ilv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|+|||++++.+|++ |++|||++|.||+++|.+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA 167 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999876 899999999999999999
Q ss_pred HHHHHhcC
Q psy125 333 LARKLIGD 340 (385)
Q Consensus 333 l~~~i~~~ 340 (385)
|++.+.+.
T Consensus 168 l~~~~~~~ 175 (180)
T 2g6b_A 168 IAKELKRR 175 (180)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99998754
No 155
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.85 E-value=1.5e-20 Score=169.82 Aligned_cols=159 Identities=21% Similarity=0.275 Sum_probs=119.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCcccc-----ccchhhhhcc
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKF-----GGLRDGYYIQ 81 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~-----~~~~~~~~~~ 81 (385)
..+||+|+|++|||||||+|+++++. .....+.++.|......... .+.+.+.+|||||++.+ ...+..++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~-~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY-SAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC-CTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 46899999999999999999977763 22222334444443333222 24789999999999887 6778888899
Q ss_pred CcEEEEEEeCCChhhhhcHHHHHH---HHHHhcCCCCEEEEEeCCCCcc--hhh------hHHHHHHHHhcC---CeEEE
Q psy125 82 GQCAIIMFDVTSRITYKNVPNWHR---DLVRVCENIPIVLCGNKVDIKD--RKV------KAKSIVFHRKKN---LQYYD 147 (385)
Q Consensus 82 ~d~illV~d~~~~~~~~~~~~~~~---~l~~~~~~~~~ilv~nK~Dl~~--~~~------~~~~~~~~~~~~---~~~~~ 147 (385)
+|++|+|||++++.+++++..|.. .+.....+.|+++|+||+|+.. .+. ..+...+....+ .++++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999999999999999988766644 4443456899999999999876 221 234555666665 69999
Q ss_pred EcCCCCCChHHHHHHHHHHHh
Q psy125 148 ISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
+||++ .++.+.+..+++.+.
T Consensus 161 tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTTC
T ss_pred eeecC-ChHHHHHHHHHHHHc
Confidence 99999 789999988887653
No 156
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.85 E-value=5.3e-21 Score=157.47 Aligned_cols=117 Identities=23% Similarity=0.280 Sum_probs=90.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc-ccccccccCcEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-LRDGYYIQGQCAII 302 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~il 302 (385)
.+||+++|.+|||||+|++++....+...+.++.+.+.....+.+++..+.+.+|||||++++.. ++..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999987777666666666777778888899899999999999999876 77888999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|||++++.||+. |++|||++|.||+++|.+|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 999999999988 8999999999999999999
Q ss_pred HHHHhcC
Q psy125 334 ARKLIGD 340 (385)
Q Consensus 334 ~~~i~~~ 340 (385)
++.+...
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988654
No 157
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.85 E-value=5e-21 Score=157.14 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=80.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|.+|||||+|++++....+ ..+.++.|+++ ...+.+++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 47999999999999999999875443 45567777776 45667888899999999999999999999999999999999
Q ss_pred EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
||++++.||++ |++|||++|.||+++|.+|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999987 89999999999999999999
Q ss_pred HHHhc
Q psy125 335 RKLIG 339 (385)
Q Consensus 335 ~~i~~ 339 (385)
+.+..
T Consensus 160 ~~~~~ 164 (166)
T 3q72_A 160 RQIRL 164 (166)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98864
No 158
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.85 E-value=3.4e-21 Score=161.80 Aligned_cols=118 Identities=31% Similarity=0.564 Sum_probs=105.5
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC-cccccccccCcEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-GLRDGYYIQGQCA 300 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~~~~~~~~~ 300 (385)
...+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++. .++..+++++|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 357999999999999999999999999988899999988888888888888999999999999998 8889999999999
Q ss_pred EEEEeCCChhhhhh-------------------------------------------------hheeccccC---CCchH
Q psy125 301 IIMFDVTSRITYKN-------------------------------------------------YYDISAKSN---YNFEK 328 (385)
Q Consensus 301 ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~---~~v~~ 328 (385)
|+|||++++.||+. |++|||++| .||++
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence 99999999999877 899999999 99999
Q ss_pred HHHHHHHHHhc
Q psy125 329 PFLWLARKLIG 339 (385)
Q Consensus 329 ~f~~l~~~i~~ 339 (385)
+|.+|++++.+
T Consensus 178 l~~~l~~~i~~ 188 (189)
T 1z06_A 178 IFMTLAHKLKS 188 (189)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHHHhh
Confidence 99999988753
No 159
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=1.8e-20 Score=181.08 Aligned_cols=158 Identities=22% Similarity=0.311 Sum_probs=125.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
++.+||+|+|.+|||||||+|+|+++.+ ..+.++.+.++.. +..+.+.+.+|||+|++.+...+..++.++|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSC-CCCCCCSSEEEEE----EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCC-CCcCCccceeEEE----EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 5679999999999999999999888774 3455666655443 3446689999999999999999999999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 159 (385)
+|||++++.++..+..|+..+... ..++|+++|+||+|+.......+...... ....+++++||+++.|++++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 474 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 474 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHH
Confidence 999999999999888888777652 25899999999999965433222222111 12336999999999999999
Q ss_pred HHHHHHHHhc
Q psy125 160 FLWLARKLIG 169 (385)
Q Consensus 160 ~~~i~~~l~~ 169 (385)
+.+|.+.+..
T Consensus 475 ~~~l~~~~~~ 484 (497)
T 3lvq_E 475 LTWLTSNYKS 484 (497)
T ss_dssp HHHHHHHCC-
T ss_pred HHHHHHHHHh
Confidence 9999998744
No 160
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.85 E-value=1.3e-20 Score=160.60 Aligned_cols=119 Identities=32% Similarity=0.642 Sum_probs=110.9
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL 86 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence 56899999999999999999999999988999999999988888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||++++.+|++ |++|||++|.||+++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (207)
T 1vg8_A 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166 (207)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHH
Confidence 999999998765 7999999999999999
Q ss_pred HHHHHHHhcCC
Q psy125 331 LWLARKLIGDP 341 (385)
Q Consensus 331 ~~l~~~i~~~~ 341 (385)
.+|++.+....
T Consensus 167 ~~l~~~~~~~~ 177 (207)
T 1vg8_A 167 QTIARNALKQE 177 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998643
No 161
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.85 E-value=1.2e-20 Score=161.54 Aligned_cols=118 Identities=28% Similarity=0.484 Sum_probs=105.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|++++..+.|...+.+|++..+ ...+.+++..+.+.||||||+++|..++..+++++|++|+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 569999999999999999999999999888899988655 4556678888899999999999999999999999999999
Q ss_pred EEeCCChhhhhh---------------------------------------------------------hheeccccCCC
Q psy125 303 MFDVTSRITYKN---------------------------------------------------------YYDISAKSNYN 325 (385)
Q Consensus 303 v~d~~~~~s~~~---------------------------------------------------------~~e~Sak~~~~ 325 (385)
|||++++.+|++ |++|||++|.|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g 166 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN 166 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCC
Confidence 999999998875 78999999999
Q ss_pred chHHHHHHHHHHhcCC
Q psy125 326 FEKPFLWLARKLIGDP 341 (385)
Q Consensus 326 v~~~f~~l~~~i~~~~ 341 (385)
|+++|.+|++.+....
T Consensus 167 i~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 167 VKAVFDTAIKVVLQPP 182 (212)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999998754
No 162
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.84 E-value=1.8e-20 Score=168.59 Aligned_cols=196 Identities=16% Similarity=0.115 Sum_probs=136.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc---------ccccchhh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE---------KFGGLRDG 77 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~---------~~~~~~~~ 77 (385)
.+..+|+|+|++|||||||+|+|++... ....+.+++|+.........+...+.+|||||.. .+......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~-~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKI-SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSE-EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 4567899999999999999999887653 2334556666665554455566789999999987 23344556
Q ss_pred hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc-hhh-hHHHHHHHHhcCC-eEEEEcCCCCC
Q psy125 78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD-RKV-KAKSIVFHRKKNL-QYYDISAKSNY 154 (385)
Q Consensus 78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~-~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~ 154 (385)
++..+|++++|+|+++ +.....++..... ..+.|+++++||+|+.. ... ......+....+. .++++||+++.
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 7789999999999976 3333344433332 24789999999999876 222 2333334444444 78999999999
Q ss_pred ChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhh
Q psy125 155 NFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215 (385)
Q Consensus 155 gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 215 (385)
|+++++..+...+... ++.+++....|.+.+....+.+++...+.+.++.|+.
T Consensus 161 ~v~~l~~~i~~~l~~~--------~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~ 213 (301)
T 1ega_A 161 NVDTIAAIVRKHLPEA--------THHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYS 213 (301)
T ss_dssp THHHHHHHHHTTCCBC--------CCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTT
T ss_pred CHHHHHHHHHHhCCcC--------CCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 9999999998876544 2344445556666666677778887776666555543
No 163
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.84 E-value=7.2e-21 Score=158.12 Aligned_cols=112 Identities=19% Similarity=0.360 Sum_probs=99.9
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|++++..+.|.. +.+|++..+ ...+.+++..+.+.||||||+++ ..|++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 357999999999999999999999988876 788887554 56677888889999999999987 56899999999
Q ss_pred EEEeCCChhhhhh------------------------------------------------------hheeccccCCCch
Q psy125 302 IMFDVTSRITYKN------------------------------------------------------YYDISAKSNYNFE 327 (385)
Q Consensus 302 lv~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v~ 327 (385)
+|||++++.||++ |++|||++|.||+
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999887 8999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy125 328 KPFLWLARKLIGD 340 (385)
Q Consensus 328 ~~f~~l~~~i~~~ 340 (385)
++|.+|++.+...
T Consensus 158 ~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 158 RVFQEVAQKVVTL 170 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 164
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.84 E-value=8e-21 Score=159.97 Aligned_cols=116 Identities=18% Similarity=0.299 Sum_probs=96.1
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcC--ccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc-cCcccccccccCcE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQC 299 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~~~ 299 (385)
..+||+++|.+|||||||+++|+.. .|...+ +++|.++..+.+.+++..+.+.+|||+|++. +..+...|++.+|+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4689999999999999999999853 344443 3466677777788898888999999999877 56678889999999
Q ss_pred EEEEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHH
Q psy125 300 AIIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 300 ~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
+|+|||++++.||+. |+||||++|.||+++|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf 163 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence 999999999999987 7999999999999999
Q ss_pred HHHHHHHhc
Q psy125 331 LWLARKLIG 339 (385)
Q Consensus 331 ~~l~~~i~~ 339 (385)
.+|++.+..
T Consensus 164 ~~l~~~~~~ 172 (192)
T 2cjw_A 164 EGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998854
No 165
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.84 E-value=7.4e-21 Score=158.02 Aligned_cols=117 Identities=31% Similarity=0.626 Sum_probs=108.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999999988899999888888888889888899999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|+. |++|||++|.||+++|.+|+
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999876 79999999999999999999
Q ss_pred HHHhc
Q psy125 335 RKLIG 339 (385)
Q Consensus 335 ~~i~~ 339 (385)
+.+..
T Consensus 173 ~~~~~ 177 (179)
T 2y8e_A 173 AALPG 177 (179)
T ss_dssp HTCC-
T ss_pred HHHhh
Confidence 87643
No 166
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.84 E-value=1e-20 Score=158.19 Aligned_cols=117 Identities=25% Similarity=0.391 Sum_probs=105.9
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|++++..+.+...+.+|++..+ ...+.+++..+.+.+|||||+++|..++..+++++|++|+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 568999999999999999999999999888899987666 4556778888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125 303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK 321 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak 321 (385)
|||++++.||++ |+||||+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 164 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 164 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeec
Confidence 999999999875 7899999
Q ss_pred -cCCCchHHHHHHHHHHhcC
Q psy125 322 -SNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 322 -~~~~v~~~f~~l~~~i~~~ 340 (385)
+|.||+++|.+|++.++.+
T Consensus 165 ~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 165 QSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp TBHHHHHHHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHHHhcC
Confidence 6899999999999988753
No 167
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.84 E-value=2.1e-20 Score=156.29 Aligned_cols=118 Identities=30% Similarity=0.503 Sum_probs=106.7
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 468999999999999999999999999888888887555 4556778888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125 303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK 321 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak 321 (385)
|||++++.||++ |++|||+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence 999999999876 5789999
Q ss_pred cCCCchHHHHHHHHHHhcCC
Q psy125 322 SNYNFEKPFLWLARKLIGDP 341 (385)
Q Consensus 322 ~~~~v~~~f~~l~~~i~~~~ 341 (385)
+|.||+++|.+|++.+...+
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 163 TQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TCTTHHHHHHHHHHHHSCCC
T ss_pred CccCHHHHHHHHHHHHhccc
Confidence 99999999999999997654
No 168
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=6.4e-21 Score=162.46 Aligned_cols=118 Identities=18% Similarity=0.286 Sum_probs=99.5
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCc--cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc-cCcccccccccCc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGE--FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQ 298 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~~ 298 (385)
...+||+++|.+|||||+|+++|+... |...+ +++|.++..+.+.+++..+.+.+|||+|++. +..+...|++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 356999999999999999999998533 34443 3466777777788888888999999999987 5667788999999
Q ss_pred EEEEEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHH
Q psy125 299 CAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 299 ~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
++|+|||++++.||+. |+||||++|.||+++
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~el 193 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999987 799999999999999
Q ss_pred HHHHHHHHhcC
Q psy125 330 FLWLARKLIGD 340 (385)
Q Consensus 330 f~~l~~~i~~~ 340 (385)
|.+|++.+...
T Consensus 194 f~~l~~~i~~~ 204 (211)
T 2g3y_A 194 FEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988643
No 169
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=159.71 Aligned_cols=118 Identities=31% Similarity=0.434 Sum_probs=98.6
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.+|.+..+ ...+..++..+.+.+|||||+++|..++..+++++|++|
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 3579999999999999999999998888888888887555 455677888889999999999999999999999999999
Q ss_pred EEEeCCChhhhhh-------------------------------------------------------------hheecc
Q psy125 302 IMFDVTSRITYKN-------------------------------------------------------------YYDISA 320 (385)
Q Consensus 302 lv~d~~~~~s~~~-------------------------------------------------------------~~e~Sa 320 (385)
+|||++++.+|++ |++|||
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 176 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence 9999999999876 789999
Q ss_pred ccCCCchHHHHHHHHHHhcC
Q psy125 321 KSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 321 k~~~~v~~~f~~l~~~i~~~ 340 (385)
++|.||+++|.+|++.+.+.
T Consensus 177 ~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 177 LTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999998754
No 170
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.7e-20 Score=158.15 Aligned_cols=116 Identities=27% Similarity=0.407 Sum_probs=105.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.+|.+..+ ...+.+++..+.+.||||||+++|..++..+++++|++|+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 468999999999999999999999999888889987665 4556677778899999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125 303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK 321 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak 321 (385)
|||++++.||++ |++|||+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 175 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence 999999999876 6789999
Q ss_pred cCCCchHHHHHHHHHHhc
Q psy125 322 SNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 322 ~~~~v~~~f~~l~~~i~~ 339 (385)
+|.||+++|.+|++.++.
T Consensus 176 ~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 176 TQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998864
No 171
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.84 E-value=4e-21 Score=158.87 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=108.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYY 79 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~ 79 (385)
+.+||+|+|++|||||||+|+|.+... ....+.++++++.....+...+..+.+|||||+...... ...++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 458999999999999999999876543 223344555544333222223456889999998653321 12357
Q ss_pred ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125 80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (385)
.++|++++|+|+++..++.. ..|+..+.... .+.|+++|+||+|+...... +....+.+++++||+++.|+++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETLG-----MSEVNGHALIRLSARTGEGVDV 155 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----EEEETTEEEEECCTTTCTTHHH
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchhh-----hhhccCCceEEEeCCCCCCHHH
Confidence 89999999999999887763 45666655532 47899999999998532110 1122356899999999999999
Q ss_pred HHHHHHHHHhc
Q psy125 159 PFLWLARKLIG 169 (385)
Q Consensus 159 l~~~i~~~l~~ 169 (385)
++..|.+.+..
T Consensus 156 l~~~l~~~~~~ 166 (172)
T 2gj8_A 156 LRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhhh
Confidence 99999887643
No 172
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.84 E-value=1.8e-20 Score=164.78 Aligned_cols=156 Identities=13% Similarity=0.068 Sum_probs=120.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc------hhhhh-
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL------RDGYY- 79 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~------~~~~~- 79 (385)
++.++|+|+|++|||||||+|+|++..+. ....+|+|...........+..+.+|||||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~--~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY--VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 45789999999999999999998876644 3455677877777666666789999999998776542 24454
Q ss_pred -ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125 80 -IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFE 157 (385)
Q Consensus 80 -~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (385)
.++|++++|+|+++.... ..|...+.. .+.|+++++||+|+..... ......+....+.+++++||+++.|++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE 155 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence 589999999999986543 345555543 4799999999999865432 223455667778899999999999999
Q ss_pred HHHHHHHHHHhc
Q psy125 158 KPFLWLARKLIG 169 (385)
Q Consensus 158 ~l~~~i~~~l~~ 169 (385)
+++..|.+.+..
T Consensus 156 el~~~i~~~~~~ 167 (258)
T 3a1s_A 156 ELKEKIVEYAQK 167 (258)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhhc
Confidence 999999997653
No 173
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.84 E-value=1.4e-20 Score=160.25 Aligned_cols=116 Identities=25% Similarity=0.393 Sum_probs=105.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|++++..+.+...+.+|++.++ ...+.+++..+.+.||||||+++|..++..++++++++|+
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 569999999999999999999999999888899988766 4556778888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125 303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK 321 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak 321 (385)
|||++++.||++ |+||||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 999999998875 7899999
Q ss_pred -cCCCchHHHHHHHHHHhc
Q psy125 322 -SNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 322 -~~~~v~~~f~~l~~~i~~ 339 (385)
+|.||+++|.+|++.+++
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999998875
No 174
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.84 E-value=1.1e-20 Score=157.49 Aligned_cols=117 Identities=30% Similarity=0.605 Sum_probs=95.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+.++ +..+.+.+|||||++++..++..+++++|++|
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 56899999999999999999999999988899999888888888776 56788999999999999999999999999999
Q ss_pred EEEeCCChhhhhh------------------------------------------------------hheeccccCCCch
Q psy125 302 IMFDVTSRITYKN------------------------------------------------------YYDISAKSNYNFE 327 (385)
Q Consensus 302 lv~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v~ 327 (385)
+|||++++.+|++ |++|||++|.||+
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (182)
T 1ky3_A 87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD 166 (182)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHH
Confidence 9999999998765 8999999999999
Q ss_pred HHHHHHHHHHhc
Q psy125 328 KPFLWLARKLIG 339 (385)
Q Consensus 328 ~~f~~l~~~i~~ 339 (385)
++|.+|++.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (182)
T 1ky3_A 167 TAFEEIARSALQ 178 (182)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
No 175
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.84 E-value=1.8e-20 Score=153.85 Aligned_cols=116 Identities=28% Similarity=0.501 Sum_probs=102.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+.++ ...+..++..+.+.+|||||++++..++..+++++|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 458999999999999999999999988888888887655 4456678888899999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|||++++.+|+. |++|||++|.||+++|.+|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 999999999876 7999999999999999999
Q ss_pred HHHHhc
Q psy125 334 ARKLIG 339 (385)
Q Consensus 334 ~~~i~~ 339 (385)
++.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998864
No 176
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=3.5e-20 Score=155.41 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=115.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------chhhhhc
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYYI 80 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------~~~~~~~ 80 (385)
++.++|+++|++|||||||+|+|++..+.... .++++.+.........+..+.+|||||+..+.. ....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 57799999999999999999998876544333 334444444444444458899999999987642 3444553
Q ss_pred --cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125 81 --QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFE 157 (385)
Q Consensus 81 --~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (385)
.++++++|+|.++. +....|+..+.. .+.|+++|+||+|+..... ......+....+.+++++||+++.|++
T Consensus 83 ~~~~~~~i~v~d~~~~---~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 157 (188)
T 2wjg_A 83 NEKPDLVVNIVDATAL---ERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE 157 (188)
T ss_dssp HHCCSEEEEEEEGGGH---HHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred ccCCCEEEEEecchhH---HHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHH
Confidence 59999999998763 344556666554 5789999999999865432 223445666667899999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy125 158 KPFLWLARKLIGD 170 (385)
Q Consensus 158 ~l~~~i~~~l~~~ 170 (385)
+++..+++.+...
T Consensus 158 ~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 158 ELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988664
No 177
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.84 E-value=1.2e-20 Score=154.81 Aligned_cols=116 Identities=27% Similarity=0.480 Sum_probs=105.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 358999999999999999999999998888888886444 6667788888899999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
|||++++.+|++ |++|||++|.||+++|.+|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999876 7999999999999999999
Q ss_pred HHHHhc
Q psy125 334 ARKLIG 339 (385)
Q Consensus 334 ~~~i~~ 339 (385)
++.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998753
No 178
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.84 E-value=1.8e-20 Score=161.70 Aligned_cols=161 Identities=16% Similarity=0.051 Sum_probs=116.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccc----------cccc
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEK----------FGGL 74 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~----------~~~~ 74 (385)
....++|+|+|.+|||||||+|+|++..+.....+..|+|......... .....+.+|||||... +...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3456899999999999999999988876556677778888887766665 5668899999999532 2233
Q ss_pred hhhhhcc---CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh----HHHHHHHHh-------
Q psy125 75 RDGYYIQ---GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRK------- 140 (385)
Q Consensus 75 ~~~~~~~---~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~----~~~~~~~~~------- 140 (385)
...++.. +|++++|+|+++...... ..++..+.. .+.|+++|+||+|+...... .........
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 3445544 788999999987543221 234444433 57899999999998764432 111222222
Q ss_pred cCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 141 KNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 141 ~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
...+++++||+++.|+++++..|.+.+..
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 45689999999999999999999998754
No 179
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=160.54 Aligned_cols=119 Identities=31% Similarity=0.523 Sum_probs=86.1
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+.+++..+.+.||||||+++|..++..+++++|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3569999999999999999999998888888888886544 556677888889999999999999999999999999999
Q ss_pred EEEeCCChhhhhh-------------------------------------------------------------hheecc
Q psy125 302 IMFDVTSRITYKN-------------------------------------------------------------YYDISA 320 (385)
Q Consensus 302 lv~d~~~~~s~~~-------------------------------------------------------------~~e~Sa 320 (385)
+|||++++.||++ |++|||
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 9999999999876 689999
Q ss_pred ccCCCchHHHHHHHHHHhcCC
Q psy125 321 KSNYNFEKPFLWLARKLIGDP 341 (385)
Q Consensus 321 k~~~~v~~~f~~l~~~i~~~~ 341 (385)
++|.||+++|.+|++.+.+.+
T Consensus 191 ~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998654
No 180
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.83 E-value=2.7e-20 Score=157.97 Aligned_cols=119 Identities=28% Similarity=0.405 Sum_probs=106.3
Q ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcE
Q psy125 220 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC 299 (385)
Q Consensus 220 ~~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 299 (385)
+....+||+++|.+|||||+|++++..+.+...+.++.+.++.. .+.+++..+.+.||||||++++..++..+++++|+
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 44567999999999999999999999999988888888776653 46678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhh-------------------------------------------------------------hhee
Q psy125 300 AIIMFDVTSRITYKN-------------------------------------------------------------YYDI 318 (385)
Q Consensus 300 ~ilv~d~~~~~s~~~-------------------------------------------------------------~~e~ 318 (385)
+|+|||++++.+|++ |++|
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999998876 5789
Q ss_pred ccccCCCchHHHHHHHHHHhc
Q psy125 319 SAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 319 Sak~~~~v~~~f~~l~~~i~~ 339 (385)
||++|.||+++|.+|++.+++
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 181
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.83 E-value=2.2e-20 Score=158.83 Aligned_cols=115 Identities=29% Similarity=0.449 Sum_probs=101.4
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.++.+. .....+.+++..+.+.||||||++++..++..+++++|++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 35699999999999999999999999998888888864 44556677888889999999999999999999999999999
Q ss_pred EEEeCCChhhhhh-------------------------------------------------------------hheecc
Q psy125 302 IMFDVTSRITYKN-------------------------------------------------------------YYDISA 320 (385)
Q Consensus 302 lv~d~~~~~s~~~-------------------------------------------------------------~~e~Sa 320 (385)
+|||++++.+|++ |++|||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 9999999999977 688999
Q ss_pred ccCCCchHHHHHHHHHH
Q psy125 321 KSNYNFEKPFLWLARKL 337 (385)
Q Consensus 321 k~~~~v~~~f~~l~~~i 337 (385)
++|.||+++|.+|++.+
T Consensus 187 ~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 187 LTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTCTTHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999999865
No 182
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.83 E-value=2.5e-20 Score=156.24 Aligned_cols=117 Identities=23% Similarity=0.459 Sum_probs=103.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+ +.....+.+++..+.+.+|||||++++..++..+++++|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 468999999999999999999999888888888875 4455667788888899999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|+. |++|||++|.||+++|.+|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999877 89999999999999999999
Q ss_pred HHHhcC
Q psy125 335 RKLIGD 340 (385)
Q Consensus 335 ~~i~~~ 340 (385)
+.+...
T Consensus 162 ~~~~~~ 167 (189)
T 4dsu_A 162 REIRKH 167 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998643
No 183
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=155.01 Aligned_cols=116 Identities=22% Similarity=0.283 Sum_probs=95.7
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc--cCcccccccccCcEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK--FGGLRDGYYIQGQCA 300 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~~~~~~ 300 (385)
..+||+++|.+|||||+|++++..+.+... .+++|.++....+.+++..+.+.+|||||++. +..+...+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 458999999999999999999987776544 45677888888888888888999999999988 667778899999999
Q ss_pred EEEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHH
Q psy125 301 IIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFL 331 (385)
Q Consensus 301 ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~ 331 (385)
++|||++++.||+. |++|||++|.||+++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 99999999999887 89999999999999999
Q ss_pred HHHHHHhc
Q psy125 332 WLARKLIG 339 (385)
Q Consensus 332 ~l~~~i~~ 339 (385)
+|++.+..
T Consensus 162 ~l~~~~~~ 169 (175)
T 2nzj_A 162 GVVRQLRL 169 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 184
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.83 E-value=1.5e-20 Score=153.43 Aligned_cols=151 Identities=18% Similarity=0.133 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc-------ccchhhhhccC
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-------GGLRDGYYIQG 82 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~-------~~~~~~~~~~~ 82 (385)
+||+++|++|||||||+++++++.+. ...+..+.+.+.........+..+.+|||||.... ......++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA-VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee-eccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 59999999999999999998876532 23344455544443333334458899999998763 23345577899
Q ss_pred cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHH
Q psy125 83 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 83 d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~ 161 (385)
|++++|+|+++..+.. ..++..+... .+.|+++|+||+|+..... ...++. ..+. +++++||+++.|+++++.
T Consensus 81 ~~~i~v~d~~~~~~~~--~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQA--DYEVAEYLRR-KGKPVILVATKVDDPKHEL--YLGPLY-GLGFGDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp SEEEEEEESSSCCCHH--HHHHHHHHHH-HTCCEEEEEECCCSGGGGG--GCGGGG-GGSSCSCEECBTTTTBSHHHHHH
T ss_pred CEEEEEEECCCcccHh--HHHHHHHHHh-cCCCEEEEEECcccccchH--hHHHHH-hCCCCCeEEEecccCCChHHHHH
Confidence 9999999999864332 2233232222 4789999999999976532 222233 3344 899999999999999999
Q ss_pred HHHHHH
Q psy125 162 WLARKL 167 (385)
Q Consensus 162 ~i~~~l 167 (385)
+|++.+
T Consensus 155 ~l~~~l 160 (161)
T 2dyk_A 155 AIWERL 160 (161)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998764
No 185
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=5.1e-20 Score=156.99 Aligned_cols=117 Identities=29% Similarity=0.410 Sum_probs=99.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+.++.. .+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 46899999999999999999999999988888888766644 36678888899999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125 303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK 321 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak 321 (385)
|||++++.+|++ |++|||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence 999999998866 4789999
Q ss_pred cCCCchHHHHHHHHHHhcC
Q psy125 322 SNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 322 ~~~~v~~~f~~l~~~i~~~ 340 (385)
+|.||+++|.+|++.++..
T Consensus 183 ~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 183 TKEGVREVFETATRAALQK 201 (207)
T ss_dssp TCTTHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 186
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.83 E-value=2.8e-20 Score=156.64 Aligned_cols=118 Identities=27% Similarity=0.557 Sum_probs=107.1
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEE-EEEEEeCCe---------eEEEEEeeCCCccccCccccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLVFHTNRG---------AIRFNVWDTAGQEKFGGLRDG 292 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~l~i~Dt~G~~~~~~~~~~ 292 (385)
..+||+++|.+|||||+|+++++.+.+...+.++++.++. ...+..++. .+.+.+|||||++++..++..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 89 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA 89 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHH
Confidence 4689999999999999999999999988888999988887 666666665 788999999999999999999
Q ss_pred ccccCcEEEEEEeCCChhhhhh-------------------------------------------------hheeccccC
Q psy125 293 YYIQGQCAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 293 ~~~~~~~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~ 323 (385)
+++++|++|+|||++++.+|++ |++|||++|
T Consensus 90 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANG 169 (195)
T ss_dssp TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCC
Confidence 9999999999999999999876 899999999
Q ss_pred CCchHHHHHHHHHHhcC
Q psy125 324 YNFEKPFLWLARKLIGD 340 (385)
Q Consensus 324 ~~v~~~f~~l~~~i~~~ 340 (385)
.||+++|.+|++.+.+.
T Consensus 170 ~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 170 TNISHAIEMLLDLIMKR 186 (195)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999988653
No 187
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.83 E-value=3.8e-20 Score=157.30 Aligned_cols=118 Identities=32% Similarity=0.600 Sum_probs=107.4
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCee------------------------------
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA------------------------------ 272 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 272 (385)
..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999999988899999988888888777655
Q ss_pred -------EEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh-------------------------------
Q psy125 273 -------IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------- 314 (385)
Q Consensus 273 -------~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~------------------------------- 314 (385)
+.+.||||||++++..++..+++.+|++|+|||++++.+|++
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~ 165 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVD 165 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSC
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCC
Confidence 889999999999999999999999999999999999999877
Q ss_pred --------------hheeccccCCCchHHHHHHHHHHhcC
Q psy125 315 --------------YYDISAKSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 315 --------------~~e~Sak~~~~v~~~f~~l~~~i~~~ 340 (385)
|++|||++|.||+++|.+|++.+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 166 ILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 79999999999999999999988653
No 188
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=3.3e-20 Score=158.80 Aligned_cols=118 Identities=30% Similarity=0.599 Sum_probs=109.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..++|+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 98 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL 98 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999998888888999888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 303 MFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 303 v~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
|||++++.+|++ |++|||++|.||+++|.+|++
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 99 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999998876 799999999999999999999
Q ss_pred HHhcC
Q psy125 336 KLIGD 340 (385)
Q Consensus 336 ~i~~~ 340 (385)
.+.+.
T Consensus 179 ~~~~~ 183 (213)
T 3cph_A 179 LIQEK 183 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 189
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.83 E-value=7.3e-21 Score=169.00 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=117.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc----------hh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL----------RD 76 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~----------~~ 76 (385)
|+.++|+++|.+|||||||+|+|++..+ .+...+|+|.+.........+..+.+|||||+..+... ..
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~--~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCE--EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHH
Confidence 3679999999999999999999877653 44566788887777666666678899999998765521 22
Q ss_pred hhh--ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCC
Q psy125 77 GYY--IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSN 153 (385)
Q Consensus 77 ~~~--~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~ 153 (385)
.++ .++|++++|+|+++..... .+...+.. .+.|+++|+||+|+..... ......+....+.+++++||+++
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNL---YLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHH---HHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGG
T ss_pred HHHhhcCCCEEEEEecCCChHHHH---HHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 232 6899999999999865443 33334433 2789999999999865432 12234456667789999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q psy125 154 YNFEKPFLWLARKLIGD 170 (385)
Q Consensus 154 ~gi~~l~~~i~~~l~~~ 170 (385)
.|+++++..|.+.+...
T Consensus 154 ~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 154 RGIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHHHHTCCCCC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 99999999998876543
No 190
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.83 E-value=3.1e-20 Score=157.16 Aligned_cols=116 Identities=22% Similarity=0.429 Sum_probs=99.5
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCcccc-ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 300 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 300 (385)
....||+++|.+|||||+|+++++.+.+.. .+.+|+|.+.... +...+.+.||||||++++..++..|++++|++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 457899999999999999999999999888 7899988554432 34567899999999999999999999999999
Q ss_pred EEEEeCCChhhhhh------------------------------------------------------------hheecc
Q psy125 301 IIMFDVTSRITYKN------------------------------------------------------------YYDISA 320 (385)
Q Consensus 301 ilv~d~~~~~s~~~------------------------------------------------------------~~e~Sa 320 (385)
|+|||++++.||++ |++|||
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 170 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNG 170 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBT
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeC
Confidence 99999999988754 479999
Q ss_pred ccCCCchHHHHHHHHHHhcCC
Q psy125 321 KSNYNFEKPFLWLARKLIGDP 341 (385)
Q Consensus 321 k~~~~v~~~f~~l~~~i~~~~ 341 (385)
++|.||+++|.+|++.+....
T Consensus 171 ~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 171 LKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TTTBTHHHHHHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999987654
No 191
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.83 E-value=1.3e-20 Score=158.15 Aligned_cols=115 Identities=25% Similarity=0.498 Sum_probs=101.7
Q ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125 221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 300 (385)
Q Consensus 221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 300 (385)
....+||+++|.+|||||+|+++++.+.+...+.+|++.++... ....+.+.||||||++++..++..+++++|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 34579999999999999999999999999888889988776542 23467889999999999999999999999999
Q ss_pred EEEEeCCChhhhhh----------------------------------------------------hheeccccCCCchH
Q psy125 301 IIMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEK 328 (385)
Q Consensus 301 ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~ 328 (385)
|+|||++++.+|+. |++|||++|.||++
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHH
Confidence 99999999999876 68999999999999
Q ss_pred HHHHHHHHHhc
Q psy125 329 PFLWLARKLIG 339 (385)
Q Consensus 329 ~f~~l~~~i~~ 339 (385)
+|.+|++.+..
T Consensus 175 l~~~l~~~~~~ 185 (188)
T 1zd9_A 175 TLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHTCC-
T ss_pred HHHHHHHHHHh
Confidence 99999997754
No 192
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=157.62 Aligned_cols=118 Identities=27% Similarity=0.500 Sum_probs=106.9
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+.+++..+.+.||||||++++..++..+++++|++|
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4579999999999999999999999988888889887665 455677888889999999999999999999999999999
Q ss_pred EEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHH
Q psy125 302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
+|||++++.+|+. |++|||++|.||+++|.+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999876 799999999999999999
Q ss_pred HHHHHhcC
Q psy125 333 LARKLIGD 340 (385)
Q Consensus 333 l~~~i~~~ 340 (385)
|++.+...
T Consensus 171 l~~~i~~~ 178 (206)
T 2bov_A 171 LMREIRAR 178 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998753
No 193
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.83 E-value=1.7e-21 Score=165.07 Aligned_cols=118 Identities=31% Similarity=0.623 Sum_probs=104.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 111 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEE
Confidence 46999999999999999999999988888888999888888888889888999999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|+. |++|||++|.||+++|.+|+
T Consensus 112 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~ 191 (199)
T 3l0i_B 112 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 191 (199)
T ss_dssp CC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999877 89999999999999999999
Q ss_pred HHHhcC
Q psy125 335 RKLIGD 340 (385)
Q Consensus 335 ~~i~~~ 340 (385)
+.+.+.
T Consensus 192 ~~l~~~ 197 (199)
T 3l0i_B 192 AEIKKR 197 (199)
T ss_dssp TTTTTT
T ss_pred HHHHHh
Confidence 887654
No 194
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=1.8e-19 Score=151.83 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=110.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCC----------ccccccchh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG----------QEKFGGLRD 76 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g----------~~~~~~~~~ 76 (385)
...+||+++|++|||||||+|+|+++. ...+.++.+.++......... .+.+||||| .+.+.....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence 456899999999999999999988766 556677888777766554433 477999999 333444455
Q ss_pred hhhccC---cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh----HHHHHHHHh-cCCeEEEE
Q psy125 77 GYYIQG---QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRK-KNLQYYDI 148 (385)
Q Consensus 77 ~~~~~~---d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~----~~~~~~~~~-~~~~~~~~ 148 (385)
.++..+ +++++|+|+++....... .+...+.. .+.|+++|+||+|+...... .....+... ...+++++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPT 173 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEEC
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 555555 899999999876433221 12222222 37899999999998654322 223334443 34689999
Q ss_pred cCCCCCChHHHHHHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~ 168 (385)
||+++.|+++++.+|.+.+.
T Consensus 174 Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 174 SSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHhh
Confidence 99999999999999998874
No 195
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.83 E-value=1.8e-20 Score=160.96 Aligned_cols=119 Identities=31% Similarity=0.551 Sum_probs=108.0
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCe----------eEEEEEeeCCCccccCcccc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG----------AIRFNVWDTAGQEKFGGLRD 291 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~Dt~G~~~~~~~~~ 291 (385)
...+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++. .+.+.||||||+++|..++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 35699999999999999999999998898888899988888777777665 78899999999999999999
Q ss_pred cccccCcEEEEEEeCCChhhhhh-------------------------------------------------hheecccc
Q psy125 292 GYYIQGQCAIIMFDVTSRITYKN-------------------------------------------------YYDISAKS 322 (385)
Q Consensus 292 ~~~~~~~~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~ 322 (385)
.+++++|++|+|||++++.+|++ |++|||++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 99999999999999999999876 89999999
Q ss_pred CCCchHHHHHHHHHHhcC
Q psy125 323 NYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 323 ~~~v~~~f~~l~~~i~~~ 340 (385)
|.||+++|.+|++.+.+.
T Consensus 183 g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 196
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=3e-20 Score=157.03 Aligned_cols=116 Identities=28% Similarity=0.419 Sum_probs=104.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+.++ ...+.+++..+.+.+|||||+++ ..++..+++.+|++|+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 468999999999999999999999999888899987655 45567788889999999999988 7788889999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------hheeccccCC-CchHHHHH
Q psy125 303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNY-NFEKPFLW 332 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~-~v~~~f~~ 332 (385)
|||++++.+|++ |++|||++|. ||+++|.+
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~ 184 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE 184 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHH
Confidence 999999999876 8999999999 99999999
Q ss_pred HHHHHhcC
Q psy125 333 LARKLIGD 340 (385)
Q Consensus 333 l~~~i~~~ 340 (385)
|++.+.+.
T Consensus 185 l~~~i~~~ 192 (196)
T 2atv_A 185 LCREVRRR 192 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998764
No 197
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.82 E-value=1.4e-20 Score=157.06 Aligned_cols=113 Identities=20% Similarity=0.419 Sum_probs=95.7
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|++++..+.+ ..+.+|+|.+.. .+..+ .+.+.+|||||+++++.++..|++++|++++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIK--SVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEE--EEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 568999999999999999999886644 567788885543 33444 5678999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||++++.+|++ |++|||++|.||+++|
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHH
Confidence 999999999876 6899999999999999
Q ss_pred HHHHHHHhcC
Q psy125 331 LWLARKLIGD 340 (385)
Q Consensus 331 ~~l~~~i~~~ 340 (385)
.+|++.+.+.
T Consensus 170 ~~l~~~~~~~ 179 (181)
T 1fzq_A 170 NWVCKNVNAK 179 (181)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHHHhc
Confidence 9999987543
No 198
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.82 E-value=4.7e-20 Score=154.25 Aligned_cols=118 Identities=27% Similarity=0.500 Sum_probs=105.8
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+..++..+.+.||||||++++..++..+++.+|++|
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4579999999999999999999999988888888887655 445667888889999999999999999999999999999
Q ss_pred EEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHH
Q psy125 302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
+|||++++.+|+. |++|||++|.||+++|.+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 174 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 9999999999876 799999999999999999
Q ss_pred HHHHHhcC
Q psy125 333 LARKLIGD 340 (385)
Q Consensus 333 l~~~i~~~ 340 (385)
|++.+...
T Consensus 175 l~~~i~~~ 182 (187)
T 2a9k_A 175 LMREIRAR 182 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998653
No 199
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.82 E-value=1.4e-20 Score=156.97 Aligned_cols=116 Identities=32% Similarity=0.492 Sum_probs=88.9
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|++++..+.+...+.+|++..+. ..+..++..+.+.+|||||++++..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4689999999999999999999998888888888775543 234456667788899999999999999999999999999
Q ss_pred EEeCCChhhhhh-----------------------------------------------------------hheeccccC
Q psy125 303 MFDVTSRITYKN-----------------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 303 v~d~~~~~s~~~-----------------------------------------------------------~~e~Sak~~ 323 (385)
|||++++.||++ |++|||++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQ 165 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCC
Confidence 999999999876 789999999
Q ss_pred CCchHHHHHHHHHHhc
Q psy125 324 YNFEKPFLWLARKLIG 339 (385)
Q Consensus 324 ~~v~~~f~~l~~~i~~ 339 (385)
.||+++|.+|++.++.
T Consensus 166 ~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 166 ENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998864
No 200
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.82 E-value=1.3e-20 Score=154.33 Aligned_cols=111 Identities=27% Similarity=0.428 Sum_probs=93.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 304 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 304 (385)
+||+++|.+|||||+|+++++.+.+.. +.+|++... ..+. ...+.+.+|||||++++..++..+++++|++|+||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE--EEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE--EEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999998877764 567776332 2333 34577999999999999999999999999999999
Q ss_pred eCCChhhhhh----------------------------------------------------hheeccccCCCchHHHHH
Q psy125 305 DVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 305 d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|++++.||++ |++|||++|.||+++|.+
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence 9999999887 689999999999999999
Q ss_pred HHHHHhcC
Q psy125 333 LARKLIGD 340 (385)
Q Consensus 333 l~~~i~~~ 340 (385)
|++.+.++
T Consensus 156 l~~~i~~~ 163 (164)
T 1r8s_A 156 LSNQLRNQ 163 (164)
T ss_dssp HHHHC---
T ss_pred HHHHHhhc
Confidence 99988543
No 201
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.82 E-value=1.1e-20 Score=159.63 Aligned_cols=117 Identities=19% Similarity=0.215 Sum_probs=100.1
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCcccccc-----------ccceeeEEEEEEE-EeCCeeEEEEEeeCCCccccCccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY-----------VATLGVEVHPLVF-HTNRGAIRFNVWDTAGQEKFGGLR 290 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~l~i~Dt~G~~~~~~~~ 290 (385)
..+||+++|.+|||||+|+ +++.+.+...+ .+|+|.++....+ .+++..+.+.||||||+++|..++
T Consensus 13 ~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR 91 (198)
T ss_dssp EEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHH
T ss_pred cccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHH
Confidence 4699999999999999999 55767776664 4577777666555 567788899999999999999999
Q ss_pred ccccccCcEEEEEEeCC------Chhhhhh----------------------------------------------hhee
Q psy125 291 DGYYIQGQCAIIMFDVT------SRITYKN----------------------------------------------YYDI 318 (385)
Q Consensus 291 ~~~~~~~~~~ilv~d~~------~~~s~~~----------------------------------------------~~e~ 318 (385)
..+++++|++|+|||++ ++.+|++ |++|
T Consensus 92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 171 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEA 171 (198)
T ss_dssp HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEEC
T ss_pred HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEE
Confidence 99999999999999999 4555543 7999
Q ss_pred ccccCCCchHHHHHHHHHHhcC
Q psy125 319 SAKSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 319 Sak~~~~v~~~f~~l~~~i~~~ 340 (385)
||++|.||+++|.+|++.+.++
T Consensus 172 Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 172 VATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp BGGGTBTHHHHHHHHHHHHHHH
T ss_pred ecCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 202
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.82 E-value=3.4e-20 Score=163.92 Aligned_cols=152 Identities=15% Similarity=0.140 Sum_probs=116.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------chhhhhc--
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYYI-- 80 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------~~~~~~~-- 80 (385)
.++|+|+|++|||||||+|+|.+.... +...+|+|++.....+.. .+.+.+|||||+..+.. +...++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~--v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR--VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC--CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 479999999999999999998776532 345568888877777776 77899999999987652 3455554
Q ss_pred cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125 81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (385)
++|++++|+|+++.... ..|...+.. .+.|+++++||+|+..... ......+....+.+++++||+++.|++++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV 154 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence 69999999999886543 345555544 5889999999999864322 22334566667889999999999999999
Q ss_pred HHHHHHHHh
Q psy125 160 FLWLARKLI 168 (385)
Q Consensus 160 ~~~i~~~l~ 168 (385)
+..|++.+.
T Consensus 155 ~~~i~~~~~ 163 (272)
T 3b1v_A 155 VKKAAHTTT 163 (272)
T ss_dssp HHHHHHSCT
T ss_pred HHHHHHHHh
Confidence 999988653
No 203
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.82 E-value=8.3e-20 Score=150.49 Aligned_cols=113 Identities=24% Similarity=0.439 Sum_probs=97.9
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|++++..+.+. .+.+|++.+... +..+ .+.+.+|||||++++..++..+++++|++|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVET--VTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE--EEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEE--EEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 4689999999999999999999888775 466777755433 3333 5678999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||++++.+|++ |++|||++|.||+++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHH
Confidence 999999988876 6899999999999999
Q ss_pred HHHHHHHhcC
Q psy125 331 LWLARKLIGD 340 (385)
Q Consensus 331 ~~l~~~i~~~ 340 (385)
.+|++.+.++
T Consensus 161 ~~l~~~i~~~ 170 (171)
T 1upt_A 161 EWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhc
Confidence 9999988653
No 204
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.82 E-value=6.5e-20 Score=153.50 Aligned_cols=113 Identities=19% Similarity=0.383 Sum_probs=99.7
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+++++++.+. ...+.+|++.+... +..+ .+.+.+|||||++++..++..+++++|++|+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~--~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKT--LEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEE--EEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999777 77788888855443 3333 5678999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||++++.||++ |++|||++|.||+++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHH
Confidence 999999999876 6899999999999999
Q ss_pred HHHHHHHhcC
Q psy125 331 LWLARKLIGD 340 (385)
Q Consensus 331 ~~l~~~i~~~ 340 (385)
.+|++.+.++
T Consensus 172 ~~l~~~i~~~ 181 (186)
T 1ksh_A 172 DWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 9999998765
No 205
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=3.2e-20 Score=155.62 Aligned_cols=113 Identities=25% Similarity=0.384 Sum_probs=94.7
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+. .+.+|+|.+.... ..+ .+.+.+|||||++++..++..+++++|++|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~--~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEI--VIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEE--EET--TEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEE--EEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 5689999999999999999999988877 7778887554433 333 4778999999999999999999999999999
Q ss_pred EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125 303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
|||++++.||++ |++|||++|.||+++|
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence 999999998877 6899999999999999
Q ss_pred HHHHHHHhcC
Q psy125 331 LWLARKLIGD 340 (385)
Q Consensus 331 ~~l~~~i~~~ 340 (385)
.+|++.+...
T Consensus 170 ~~l~~~~~~~ 179 (187)
T 1zj6_A 170 EWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHCC-
T ss_pred HHHHHHHHHH
Confidence 9999988554
No 206
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=6e-20 Score=151.38 Aligned_cols=116 Identities=24% Similarity=0.442 Sum_probs=103.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||+|+++++.+.+...+.++.+.++. ..+..++..+.+.+|||||++++..++..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 3589999999999999999999988888888888876654 445667778899999999999999999999999999999
Q ss_pred EEeCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHH
Q psy125 303 MFDVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 303 v~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|||++++.+|++ |++|||++|.||+++|.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999876 799999999999999999
Q ss_pred HHHHHhc
Q psy125 333 LARKLIG 339 (385)
Q Consensus 333 l~~~i~~ 339 (385)
|++.+..
T Consensus 161 l~~~~~~ 167 (172)
T 2erx_A 161 LLNLEKR 167 (172)
T ss_dssp HHHTCCS
T ss_pred HHHHHhh
Confidence 9986643
No 207
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=2.5e-20 Score=163.62 Aligned_cols=150 Identities=17% Similarity=0.125 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc----------chhhhh
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----------LRDGYY 79 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----------~~~~~~ 79 (385)
.+|+|+|.+|||||||+|+|.+... .+...+|+|.+........++..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~--~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ--RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE--EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999877653 3445667777776666655556899999999876653 344556
Q ss_pred --ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCCh
Q psy125 80 --IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNF 156 (385)
Q Consensus 80 --~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (385)
.++|++++|+|+++...... +...+.. .+.|+++|+||+|+..... ......+....+.+++++||+++.|+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~---l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLY---LTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHH---HHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred hhCCCCEEEEEeeCCCchhHHH---HHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 88999999999998654432 3333332 4789999999999865432 12233456667889999999999999
Q ss_pred HHHHHHHHHH
Q psy125 157 EKPFLWLARK 166 (385)
Q Consensus 157 ~~l~~~i~~~ 166 (385)
++++..|.+.
T Consensus 155 ~el~~~i~~~ 164 (256)
T 3iby_A 155 PALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999887
No 208
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.82 E-value=9.2e-20 Score=161.92 Aligned_cols=158 Identities=20% Similarity=0.115 Sum_probs=118.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------chhhhh-
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYY- 79 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------~~~~~~- 79 (385)
|+.++|+|+|++|||||||+|+|++..+ .....+|+|.+.........+..+.+|||||...+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQ--HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCE--EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 4678999999999999999999877655 3445566666666655555566799999999887655 344455
Q ss_pred -ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125 80 -IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFE 157 (385)
Q Consensus 80 -~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (385)
.++|++++|+|+++... ...+...+... ...|+++++||+|+..... ......+....+.+++++|++++.|++
T Consensus 79 ~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLMR---NLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp TTCCSEEEEEEEGGGHHH---HHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred ccCCcEEEEEecCCcchh---hHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHH
Confidence 68999999999988632 22344444432 2399999999999865332 222445666778899999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy125 158 KPFLWLARKLIGD 170 (385)
Q Consensus 158 ~l~~~i~~~l~~~ 170 (385)
+++..+.+.+...
T Consensus 155 ~l~~~i~~~~~~~ 167 (271)
T 3k53_A 155 ELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987654
No 209
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.82 E-value=5.6e-20 Score=154.82 Aligned_cols=114 Identities=25% Similarity=0.397 Sum_probs=92.5
Q ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125 221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 300 (385)
Q Consensus 221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 300 (385)
....+||+++|.+|||||+|+++++.+.+. .+.+|++... ..+.. ..+.+.+|||||++++..++..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEE--EEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeE--EEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 346799999999999999999999888775 4567776333 33333 457899999999999999999999999999
Q ss_pred EEEEeCCChhhhhh----------------------------------------------------hheeccccCCCchH
Q psy125 301 IIMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEK 328 (385)
Q Consensus 301 ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~ 328 (385)
|+|||++++.+|++ |++|||++|.||++
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHH
Confidence 99999999999886 68999999999999
Q ss_pred HHHHHHHHHhc
Q psy125 329 PFLWLARKLIG 339 (385)
Q Consensus 329 ~f~~l~~~i~~ 339 (385)
+|.+|++.+.+
T Consensus 181 l~~~l~~~i~~ 191 (192)
T 2b6h_A 181 GLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 210
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.81 E-value=3.3e-20 Score=154.68 Aligned_cols=110 Identities=25% Similarity=0.400 Sum_probs=95.9
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+ ..+.+|+|.+.... .++ ++.+.+|||||++++..++..+++++|++|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~--~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEI--VIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEE--EET--TEEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEE--EEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3569999999999999999999998887 67788888665433 333 477999999999999999999999999999
Q ss_pred EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125 302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
+|||++++.+|++ |++|||++|.||+++
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 9999999999876 689999999999999
Q ss_pred HHHHHHH
Q psy125 330 FLWLARK 336 (385)
Q Consensus 330 f~~l~~~ 336 (385)
|.+|++.
T Consensus 174 ~~~l~~~ 180 (181)
T 2h17_A 174 LEWMMSR 180 (181)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 9999864
No 211
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=8.6e-20 Score=154.42 Aligned_cols=118 Identities=26% Similarity=0.476 Sum_probs=105.2
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...++|+++|.+|||||+|+++++.+.+...+.++.+.++. ..+..++..+.+.||||||++++..++..+++++|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 34689999999999999999999999888888888876654 44567788889999999999999999999999999999
Q ss_pred EEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHH
Q psy125 302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
+|||++++.+|++ |++|||++|.||+++|.+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999876 799999999999999999
Q ss_pred HHHHHhcC
Q psy125 333 LARKLIGD 340 (385)
Q Consensus 333 l~~~i~~~ 340 (385)
|++.+...
T Consensus 165 l~~~~~~~ 172 (199)
T 2gf0_A 165 LLTLETRR 172 (199)
T ss_dssp HHHHCSSS
T ss_pred HHHHHhhh
Confidence 99987543
No 212
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.81 E-value=2e-20 Score=166.96 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=109.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc---chhhhhccCc
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---LRDGYYIQGQ 83 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~---~~~~~~~~~d 83 (385)
||+++|+.|||||||++++..+ +.+. ..++.|+.... .. ..+.+.+|||+|+++++. ....++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~-~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN-MQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC-CCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcC-CCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCC
Confidence 6899999999999999986544 4433 45666665543 22 358899999999999864 3578999999
Q ss_pred EEEEEEeCCChhhhhcHHHH---HHHHHHhcCCCCEEEEEeCCCCcchhh---------hHHHHHHHHh----cCCeEEE
Q psy125 84 CAIIMFDVTSRITYKNVPNW---HRDLVRVCENIPIVLCGNKVDIKDRKV---------KAKSIVFHRK----KNLQYYD 147 (385)
Q Consensus 84 ~illV~d~~~~~~~~~~~~~---~~~l~~~~~~~~~ilv~nK~Dl~~~~~---------~~~~~~~~~~----~~~~~~~ 147 (385)
++|+|||+++. .+.....| +..+....++.|+++++||+|+..... ..+..+++.. .+..+++
T Consensus 75 ~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 75 ALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 99999999997 33333333 444444457899999999999975321 1122234443 3568999
Q ss_pred EcCCCCCChHHHHHHHHHHHhcC
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~ 170 (385)
+||++ .++.+.|..+++.+..+
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSSTT
T ss_pred eccCC-CcHHHHHHHHHHHHHhh
Confidence 99998 58999999998876543
No 213
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.81 E-value=4.8e-20 Score=179.25 Aligned_cols=164 Identities=21% Similarity=0.295 Sum_probs=119.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEE--------EeCCeeEEEEEEeCCCccccccchhh
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF--------HTNRGAIRFNVWDTAGQEKFGGLRDG 77 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~--------~~~~~~~~~~i~Dt~g~~~~~~~~~~ 77 (385)
..+.+||+|+|.+|||||||+|++.++.+...+.++.|.+...... ......+.+.+|||||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 3567999999999999999999999888887788888877665421 11234689999999999998888888
Q ss_pred hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCC
Q psy125 78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYN 155 (385)
Q Consensus 78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (385)
++.++|++|+|+|+++. +....|+..+.....+.|+++|+||+|+..... ......+....+.+++++||+++.|
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g 194 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDG 194 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccC
Confidence 99999999999999765 455678888877667899999999999865433 3344556666677899999999999
Q ss_pred hHHHHHHHHHHHhcCCC
Q psy125 156 FEKPFLWLARKLIGDPN 172 (385)
Q Consensus 156 i~~l~~~i~~~l~~~~~ 172 (385)
+++++..|++.+...+.
T Consensus 195 i~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 195 VESIAKSLKSAVLHPDS 211 (535)
T ss_dssp CTTHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999876544
No 214
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.81 E-value=5.2e-20 Score=154.49 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCC-----------ccccccchhhh
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG-----------QEKFGGLRDGY 78 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g-----------~~~~~~~~~~~ 78 (385)
+||+++|++|||||||+|+|+++.+.....+ ++++........ .+.+||||| ++.+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCC--CccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6999999999999999999988776554433 555554444433 688999999 34444555556
Q ss_pred hcc-CcEEEEEEeCCChhhhhcH-HHHHHH--------HHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---
Q psy125 79 YIQ-GQCAIIMFDVTSRITYKNV-PNWHRD--------LVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL--- 143 (385)
Q Consensus 79 ~~~-~d~illV~d~~~~~~~~~~-~~~~~~--------l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--- 143 (385)
+.+ ++++++|+++.+..++..+ ..|... +.. ...+.|+++|+||+|+.... ......+....+.
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLS 154 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhh
Confidence 665 6666666666666666554 344331 111 12579999999999987654 2233444444444
Q ss_pred ----eEEEEcCCCCCChHHHHHHHHHHHhcC
Q psy125 144 ----QYYDISAKSNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 144 ----~~~~~Sa~~~~gi~~l~~~i~~~l~~~ 170 (385)
.++++||+++.|+++++..|++.+...
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred ccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 479999999999999999999987654
No 215
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.81 E-value=2e-19 Score=147.15 Aligned_cols=115 Identities=25% Similarity=0.462 Sum_probs=103.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
.+||+++|.+|||||+++++++.+.+...+.++.+..+ ...+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 57999999999999999999998888888888876544 55667788888999999999999999999999999999999
Q ss_pred EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
||++++.+|++ |++|||++|.||+++|.+|++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999876 899999999999999999999
Q ss_pred HHhc
Q psy125 336 KLIG 339 (385)
Q Consensus 336 ~i~~ 339 (385)
.+.+
T Consensus 162 ~~~~ 165 (166)
T 2ce2_X 162 EIRQ 165 (166)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8854
No 216
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.81 E-value=2.4e-19 Score=150.52 Aligned_cols=118 Identities=25% Similarity=0.466 Sum_probs=95.3
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.||||||++++..++..+++.+++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4569999999999999999999998888888888876544 456677888889999999999999999999999999999
Q ss_pred EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
+|||++++.+|++ |++|||++|.||+++|.+|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999876 8999999999999999999
Q ss_pred HHHHhcC
Q psy125 334 ARKLIGD 340 (385)
Q Consensus 334 ~~~i~~~ 340 (385)
++.+.+.
T Consensus 178 ~~~~~~~ 184 (190)
T 3con_A 178 VREIRQY 184 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 217
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.81 E-value=5.7e-20 Score=155.52 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=87.9
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|++++..+.+. .+.+|++.+.. .+.+++ +.+.+|||||+++++.++..|++++|++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeE--EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45689999999999999999999877764 57788877643 344454 78999999999999999999999999999
Q ss_pred EEEeCCChhhhhh----------------------------------------------------------------hhe
Q psy125 302 IMFDVTSRITYKN----------------------------------------------------------------YYD 317 (385)
Q Consensus 302 lv~d~~~~~s~~~----------------------------------------------------------------~~e 317 (385)
+|||++++.||++ |++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM 177 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEE
Confidence 9999999998876 367
Q ss_pred eccccCCCchHHHHHHHHHH
Q psy125 318 ISAKSNYNFEKPFLWLARKL 337 (385)
Q Consensus 318 ~Sak~~~~v~~~f~~l~~~i 337 (385)
|||++|.||+++|.+|++.+
T Consensus 178 ~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 178 CSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CBTTTTBSHHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 99999999999999998754
No 218
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.81 E-value=1.4e-19 Score=152.13 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=93.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+||+++|.+|||||++++++..+.+. .+.+|++.+. ..+.+++ +.+.+|||||+++++.++..|++++|++|+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEE--EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 4579999999999999999999988764 5678887754 3444454 788999999999999999999999999999
Q ss_pred EEeCCChhhhhh-----------------------------------------------------------hheeccccC
Q psy125 303 MFDVTSRITYKN-----------------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 303 v~d~~~~~s~~~-----------------------------------------------------------~~e~Sak~~ 323 (385)
|||++++.||++ |+||||++|
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 176 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR 176 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcC
Confidence 999999999876 257999999
Q ss_pred CCchHHHHHHHHH
Q psy125 324 YNFEKPFLWLARK 336 (385)
Q Consensus 324 ~~v~~~f~~l~~~ 336 (385)
.||+++|.+|++.
T Consensus 177 ~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 177 NGYLEAFQWLSQY 189 (190)
T ss_dssp BSHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999864
No 219
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.80 E-value=2.2e-19 Score=170.43 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=99.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhhc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYI 80 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~~ 80 (385)
.++|+|+|++|||||||+|+|++.. ...+.+.+|+|++........+++.+.+|||||+..+... ...++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~-~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQE-RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 4799999999999999999966643 3345667778887765555556688999999998665432 234678
Q ss_pred cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
++|++|+|+|++++.+++.+..+...+ ....+.|+++|+||+|+........ ..+......+++++||+++.|+++++
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l-~~l~~~piIvV~NK~Dl~~~~~~~~-~~l~~~~~~~~i~vSAktg~GI~eL~ 389 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELK-AAHPAAKFLTVANKLDRAANADALI-RAIADGTGTEVIGISALNGDGIDTLK 389 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHH-HHCTTSEEEEEEECTTSCTTTHHHH-HHHHHHHTSCEEECBTTTTBSHHHHH
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHH-HhcCCCCEEEEEECcCCCCccchhH-HHHHhcCCCceEEEEECCCCCHHHHH
Confidence 999999999999988876543333333 2334899999999999976543321 22333334789999999999999999
Q ss_pred HHHHHHHh
Q psy125 161 LWLARKLI 168 (385)
Q Consensus 161 ~~i~~~l~ 168 (385)
.+|.+.+.
T Consensus 390 ~~i~~~~~ 397 (476)
T 3gee_A 390 QHMGDLVK 397 (476)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHh
Confidence 99999886
No 220
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.80 E-value=1.3e-19 Score=152.15 Aligned_cols=114 Identities=24% Similarity=0.388 Sum_probs=98.0
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||++++++..+.+.. +.+|++..... +..+ .+.+.+|||||++++..++..+++++|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLET--LQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEE--EEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEE--EEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 356999999999999999999988777654 66777644333 3333 567899999999999999999999999999
Q ss_pred EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125 302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
+|||++++.+|++ |++|||++|.||+++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG 174 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence 9999999988876 689999999999999
Q ss_pred HHHHHHHHhcC
Q psy125 330 FLWLARKLIGD 340 (385)
Q Consensus 330 f~~l~~~i~~~ 340 (385)
|.+|++.+.+.
T Consensus 175 ~~~l~~~i~~~ 185 (189)
T 2x77_A 175 MDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999998754
No 221
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=150.98 Aligned_cols=114 Identities=21% Similarity=0.409 Sum_probs=96.5
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCc-cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA 300 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 300 (385)
...+||+++|.+|||||+|+++++.+. +...+.+|++.. ...+.++ ++.+.||||||++++..++..+++++|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 356999999999999999999998777 567788888744 3344444 46789999999999999999999999999
Q ss_pred EEEEeCCChhhhhh------------------------------------------------------hheeccccCCCc
Q psy125 301 IIMFDVTSRITYKN------------------------------------------------------YYDISAKSNYNF 326 (385)
Q Consensus 301 ilv~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v 326 (385)
|+|||++++.||++ |++|||++|.||
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL 174 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence 99999999988865 689999999999
Q ss_pred hHHHHHHHHHHhc
Q psy125 327 EKPFLWLARKLIG 339 (385)
Q Consensus 327 ~~~f~~l~~~i~~ 339 (385)
+++|.+|++.+.+
T Consensus 175 ~~l~~~l~~~i~~ 187 (190)
T 2h57_A 175 QEGVDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998743
No 222
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.80 E-value=1.6e-19 Score=150.61 Aligned_cols=113 Identities=24% Similarity=0.387 Sum_probs=94.5
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+ ..+.+|+|..... +..+ .+.+.+|||||++++..++..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET--LSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEE--EEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3569999999999999999999887777 6777888755433 3333 477899999999999999999999999999
Q ss_pred EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125 302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
+|||++++.+|++ |++|||++|.||+++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 9999999998876 689999999999999
Q ss_pred HHHHHHHHhc
Q psy125 330 FLWLARKLIG 339 (385)
Q Consensus 330 f~~l~~~i~~ 339 (385)
|.+|++.+.+
T Consensus 171 ~~~l~~~~~~ 180 (183)
T 1moz_A 171 LDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 223
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.79 E-value=3.9e-19 Score=150.53 Aligned_cols=118 Identities=31% Similarity=0.575 Sum_probs=106.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..+|++++|++|||||||++++.+..+...+.+++|.++....+.+++..+.+.+|||+|++++..++..++++++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 35899999999999999999999988888888999888888888899988899999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||++++.+|++ |++|||+++.|++++|.+|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999998876 78999999999999999999
Q ss_pred HHHhcC
Q psy125 335 RKLIGD 340 (385)
Q Consensus 335 ~~i~~~ 340 (385)
+.+.+.
T Consensus 164 ~~~~~~ 169 (199)
T 2f9l_A 164 TEIYRI 169 (199)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 224
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.79 E-value=2.4e-18 Score=158.75 Aligned_cols=160 Identities=19% Similarity=0.170 Sum_probs=116.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc---------chhh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---------LRDG 77 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~---------~~~~ 77 (385)
...++|+++|.+|||||||+|+|++.... .....+.|..........+...+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE--IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE--EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 35689999999999999999997765522 222333444443333333457899999999754321 1123
Q ss_pred hhccCcEEEEEEeCCChh--hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCC
Q psy125 78 YYIQGQCAIIMFDVTSRI--TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYN 155 (385)
Q Consensus 78 ~~~~~d~illV~d~~~~~--~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (385)
+...+|++++|+|+++.. ++.....|+..+.....+.|+++|+||+|+.......+...++...+.+++++||++|.|
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG 322 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence 345699999999998876 556566777777665458999999999999765544445556666778999999999999
Q ss_pred hHHHHHHHHHHHh
Q psy125 156 FEKPFLWLARKLI 168 (385)
Q Consensus 156 i~~l~~~i~~~l~ 168 (385)
+++++.+|.+.+.
T Consensus 323 i~~l~~~i~~~l~ 335 (357)
T 2e87_A 323 IDLVKEEIIKTLR 335 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998873
No 225
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.79 E-value=8.3e-20 Score=155.58 Aligned_cols=118 Identities=26% Similarity=0.442 Sum_probs=72.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcC--ccccccccceeeEEEEEEEEeCCe--eEEEEEeeCCCccccCcccccccccCc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHTNRG--AIRFNVWDTAGQEKFGGLRDGYYIQGQ 298 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 298 (385)
..+||+++|.+|||||+|+++++.+ .+...+.+|.+.++....+.+++. .+.+.||||||++++..++..+++++|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 4689999999999999999999988 788888899887888888888876 889999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhh----------------------------------------------------hheecccc-CCC
Q psy125 299 CAIIMFDVTSRITYKN----------------------------------------------------YYDISAKS-NYN 325 (385)
Q Consensus 299 ~~ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~-~~~ 325 (385)
++|+|||++++.+|++ |++|||++ |.|
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~g 178 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKD 178 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcC
Confidence 9999999999988765 78999999 999
Q ss_pred chHHHHHHHHHHhcC
Q psy125 326 FEKPFLWLARKLIGD 340 (385)
Q Consensus 326 v~~~f~~l~~~i~~~ 340 (385)
|+++|.+|++.+.+.
T Consensus 179 i~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 179 ADAPFLSIATTFYRN 193 (208)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988643
No 226
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.78 E-value=1.3e-18 Score=146.32 Aligned_cols=115 Identities=30% Similarity=0.594 Sum_probs=106.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..++++++|++|||||||++++....+...+.+|+|.++....+.+++..+.+.+|||+|++++..++..++++++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 35899999999999999999999998888899999999888888899888888999999999999999999999999999
Q ss_pred EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125 303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
|||+++..+|++ |++|||+++.|++++|++|.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999988754 78899999999999999999
Q ss_pred HHH
Q psy125 335 RKL 337 (385)
Q Consensus 335 ~~i 337 (385)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 227
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=2.3e-19 Score=167.47 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=109.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-EEEEEEeCCCccccccc-------hhhh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQEKFGGL-------RDGY 78 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-~~~~i~Dt~g~~~~~~~-------~~~~ 78 (385)
...++|+|+|+.|+|||||+|+|++..+ .......|+|.+.......... ..+.+|||||+..+... ...+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNV-SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCC-CccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 4578999999999999999999766543 3334556666655444333222 38899999999876543 3457
Q ss_pred hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125 79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (385)
+.++|++|+|+|+.... ....|+..+.. .+.|+++|+||+|+...........+....+.+++++||+++.|+++
T Consensus 111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~e 185 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTP---YEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDD 185 (423)
T ss_dssp HTSCSEEEEECSSSCCH---HHHHHHHHHHH--TTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTT
T ss_pred HhcCCEEEEEEeCCChH---HHHHHHHHHHh--cCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 88999999999993322 22456666554 38999999999999765554444445555677999999999999999
Q ss_pred HHHHHHHHHhcC
Q psy125 159 PFLWLARKLIGD 170 (385)
Q Consensus 159 l~~~i~~~l~~~ 170 (385)
++..|.+.+...
T Consensus 186 L~~~L~~~l~~~ 197 (423)
T 3qq5_A 186 IGKTISEILPGD 197 (423)
T ss_dssp HHHHHHHHSCCC
T ss_pred HHHHHHHhhhhh
Confidence 999999998543
No 228
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.77 E-value=4.1e-19 Score=159.72 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=121.8
Q ss_pred HHHHHHhcCCCC-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh-hhhcHH
Q psy125 24 TFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKNVP 101 (385)
Q Consensus 24 TLin~ll~~~~~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~-~~~~~~ 101 (385)
+|+++++.+.+. ..+.|+.|..+... ...+. .+.+||+ +++++.++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~---~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYT---PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEE---CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEE---EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 588888888887 78889999554422 22222 6889999 8888899999999999999999999987 677778
Q ss_pred HHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcC--CeEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCC
Q psy125 102 NWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179 (385)
Q Consensus 102 ~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~ 179 (385)
.|+..+.. .+.|+++|+||+|+.......+...+..... ..++++||+++.|+++++..+..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g-------------- 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG-------------- 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS--------------
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC--------------
Confidence 88877654 5899999999999976543223334444444 78999999999999988765321
Q ss_pred CCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHHHHHHhc
Q psy125 180 ALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLT 246 (385)
Q Consensus 180 ~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~~~~~~~ 246 (385)
-.++++|++|+||||+++.+.+
T Consensus 170 ---------------------------------------------eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 ---------------------------------------------KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp ---------------------------------------------SEEEEECSTTSSHHHHHHHHST
T ss_pred ---------------------------------------------CeEEEECCCCCcHHHHHHHhcc
Confidence 1478999999999999999764
No 229
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=3e-19 Score=149.30 Aligned_cols=118 Identities=21% Similarity=0.334 Sum_probs=90.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC--ccccccccceeeEEEEEEEEe---CCeeEEEEEeeCCCccccCcccccccccCc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHT---NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ 298 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 298 (385)
.+|++++|++|||||||++++... .+...+.+|+|.++....+.+ ++..+.+.+|||+|+++|..+++.|+++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 379999999999999999998874 566678888888877665543 335678999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhhhh------------------------------------------------------hheeccccC
Q psy125 299 CAIIMFDVTSR-ITYKN------------------------------------------------------YYDISAKSN 323 (385)
Q Consensus 299 ~~ilv~d~~~~-~s~~~------------------------------------------------------~~e~Sak~~ 323 (385)
++++|||++++ .+|++ |+||||++|
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 99999999998 46765 578999999
Q ss_pred C-CchHHHHHHHHHHhcCC
Q psy125 324 Y-NFEKPFLWLARKLIGDP 341 (385)
Q Consensus 324 ~-~v~~~f~~l~~~i~~~~ 341 (385)
. |++++|..|++.+.+.+
T Consensus 162 ~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 162 SDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CHHHHHHHHHHHHHHHCC-
T ss_pred chhHHHHHHHHHHHHhccc
Confidence 6 99999999999887644
No 230
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.77 E-value=6.4e-19 Score=160.51 Aligned_cols=114 Identities=26% Similarity=0.418 Sum_probs=92.6
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|++++..+.+...+ +|++..+.. ++...+.+.||||||+++|..++..+++++|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~~----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEEE----EEETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEEE----EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 35689999999999999999999888776543 566655433 2334578999999999999999999999999999
Q ss_pred EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125 302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
+|||++++.+|+. |++|||++|.||+++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el 317 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 317 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence 9999999999877 689999999999999
Q ss_pred HHHHHHHHhcC
Q psy125 330 FLWLARKLIGD 340 (385)
Q Consensus 330 f~~l~~~i~~~ 340 (385)
|.+|++.+.+.
T Consensus 318 ~~~l~~~l~~~ 328 (329)
T 3o47_A 318 LDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 231
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=2.4e-19 Score=154.10 Aligned_cols=144 Identities=14% Similarity=0.162 Sum_probs=98.5
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc---ccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhh
Q psy125 3 AEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYY 79 (385)
Q Consensus 3 ~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~---~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~ 79 (385)
.....+.++|+++|++|+|||||+++|+++.+... +.++.+ .....+.+.+|||||++.++..+..++
T Consensus 6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 76 (218)
T 1nrj_B 6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYL 76 (218)
T ss_dssp ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE---------TTGGGSSCEEEECCCCGGGTHHHHHHH
T ss_pred CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE---------EEeeCceEEEEECCCcHHHHHHHHHHH
Confidence 33345679999999999999999999888765432 222221 122556789999999998888777777
Q ss_pred cc----CcEEEEEEeCC-ChhhhhcHHHHHHHHHHh-----cCCCCEEEEEeCCCCcchhh--------hHHHHHHHHhc
Q psy125 80 IQ----GQCAIIMFDVT-SRITYKNVPNWHRDLVRV-----CENIPIVLCGNKVDIKDRKV--------KAKSIVFHRKK 141 (385)
Q Consensus 80 ~~----~d~illV~d~~-~~~~~~~~~~~~~~l~~~-----~~~~~~ilv~nK~Dl~~~~~--------~~~~~~~~~~~ 141 (385)
.. +|++|+|+|++ ++.++.....|+..+... ..+.|+++|+||+|+..... ..+...+....
T Consensus 77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 156 (218)
T 1nrj_B 77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR 156 (218)
T ss_dssp HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 76 89999999999 888888777777776552 25799999999999875432 12233444455
Q ss_pred CCeEEEEcCCCCCC
Q psy125 142 NLQYYDISAKSNYN 155 (385)
Q Consensus 142 ~~~~~~~Sa~~~~g 155 (385)
+..++++|++++.+
T Consensus 157 ~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 157 KKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHC--------
T ss_pred hccccccccccccc
Confidence 56788999988765
No 232
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.64 E-value=2.4e-20 Score=158.68 Aligned_cols=115 Identities=30% Similarity=0.474 Sum_probs=101.4
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+..++..+.+.+|||||++++..++..+++++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 3568999999999999999999998888888888876544 444566777788899999999999999999999999999
Q ss_pred EEEeCCChhhhhh-------------------------------------------------------------hheecc
Q psy125 302 IMFDVTSRITYKN-------------------------------------------------------------YYDISA 320 (385)
Q Consensus 302 lv~d~~~~~s~~~-------------------------------------------------------------~~e~Sa 320 (385)
+|||++++.+|++ |++|||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 9999999998876 578999
Q ss_pred ccCCCchHHHHHHHHHH
Q psy125 321 KSNYNFEKPFLWLARKL 337 (385)
Q Consensus 321 k~~~~v~~~f~~l~~~i 337 (385)
++|.||+++|.+|++.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999998875
No 233
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.77 E-value=3.9e-18 Score=156.10 Aligned_cols=117 Identities=27% Similarity=0.445 Sum_probs=105.1
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
..++|+++|.+|||||+|++++..+.+...+.+|.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999999999888888887555 4556778888899999999999999999999999999999
Q ss_pred EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125 303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK 321 (385)
Q Consensus 303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak 321 (385)
|||++++.||++ |++|||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 999999999876 5789999
Q ss_pred cCCCchHHHHHHHHHHhcC
Q psy125 322 SNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 322 ~~~~v~~~f~~l~~~i~~~ 340 (385)
+|.||+++|.+|++.++..
T Consensus 313 ~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHhcC
Confidence 9999999999999998754
No 234
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.77 E-value=1.2e-18 Score=144.52 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=99.0
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...++|+++|.+|||||+|+++++.+.+...+.++.+.+.....+..++. .+.+|||||++++..++..++..+|++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 45689999999999999999999988887776666655555555555554 5789999999999999999999999999
Q ss_pred EEEeCCC---hhhhhh-----------------------------------------------hheeccccCCCchHHHH
Q psy125 302 IMFDVTS---RITYKN-----------------------------------------------YYDISAKSNYNFEKPFL 331 (385)
Q Consensus 302 lv~d~~~---~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~ 331 (385)
+|||+++ ..+++. |++|||++|.||+++|.
T Consensus 84 ~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 84 LVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLE 163 (178)
T ss_dssp EEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHH
Confidence 9999998 555544 57899999999999999
Q ss_pred HHHHHHhcCC
Q psy125 332 WLARKLIGDP 341 (385)
Q Consensus 332 ~l~~~i~~~~ 341 (385)
+|++.+....
T Consensus 164 ~l~~~~~~~~ 173 (178)
T 2lkc_A 164 MILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHhhhhhc
Confidence 9999876543
No 235
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.76 E-value=3.2e-18 Score=149.62 Aligned_cols=164 Identities=10% Similarity=0.007 Sum_probs=107.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc--------ccccchhhh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE--------KFGGLRDGY 78 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~--------~~~~~~~~~ 78 (385)
.+.+||+|+|.+|||||||+|+|++........+..++|+.+........+..+.+|||||.. .+......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 467999999999999999999988877665555556677777666666667889999999973 222222222
Q ss_pred ----hccCcEEEEEEeCCChhhhh-cHHHHHHHHHH-hcCCCCEEEEEeCCCCcchhhh--------HHHHHHHHhcCCe
Q psy125 79 ----YIQGQCAIIMFDVTSRITYK-NVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKVK--------AKSIVFHRKKNLQ 144 (385)
Q Consensus 79 ----~~~~d~illV~d~~~~~~~~-~~~~~~~~l~~-~~~~~~~ilv~nK~Dl~~~~~~--------~~~~~~~~~~~~~ 144 (385)
.+++|++|+|+|+++..... .+..++..+.. ...+.|+++++||.|+...... ..+..+...++..
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~ 178 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGR 178 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred HHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCe
Confidence 38999999999998532111 11223333221 1126789999999998653211 2345666777777
Q ss_pred EEEEcCCC-----CCChHHHHHHHHHHHhcC
Q psy125 145 YYDISAKS-----NYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 145 ~~~~Sa~~-----~~gi~~l~~~i~~~l~~~ 170 (385)
++.+++.. +.|+.+++..|.+.+..+
T Consensus 179 ~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 179 VCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 77777654 578999999998888753
No 236
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.76 E-value=9.1e-19 Score=147.87 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=88.9
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEE--EEEEEeC-CeeEEEEEeeCCCccccCccc---ccccc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH--PLVFHTN-RGAIRFNVWDTAGQEKFGGLR---DGYYI 295 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~---~~~~~ 295 (385)
...+||+++|.+|||||+|++++. +.+... ++++.++. .....+. +..+.+.||||||+++|..+. ..|++
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVF-HKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHH-SCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHH-hcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 357999999999999999999754 555544 33333333 3333333 566889999999999998877 79999
Q ss_pred cCcEEEEEEeCCCh--hhhhh----------------------------------------------------------h
Q psy125 296 QGQCAIIMFDVTSR--ITYKN----------------------------------------------------------Y 315 (385)
Q Consensus 296 ~~~~~ilv~d~~~~--~s~~~----------------------------------------------------------~ 315 (385)
++|++|+|||++++ .+++. |
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF 174 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcce
Confidence 99999999999997 45443 7
Q ss_pred heeccccCCCchHHHHHHHHHHh
Q psy125 316 YDISAKSNYNFEKPFLWLARKLI 338 (385)
Q Consensus 316 ~e~Sak~~~~v~~~f~~l~~~i~ 338 (385)
+||||++ .||+++|..|++.|+
T Consensus 175 ~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 175 YLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp EEECTTS-THHHHHHHHHHHHTC
T ss_pred EEEEech-hhHHHHHHHHHHHhC
Confidence 8999999 999999999999763
No 237
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.76 E-value=3.5e-19 Score=158.98 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=87.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcccc---ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc---ccccccccCcE
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEK---KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---LRDGYYIQGQC 299 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~~~~ 299 (385)
|++++|.+|||||++++++..+.+.. .+.+|+|.++... + ..++++|||||||++|+. .++.||++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v----~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF----S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE----C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE----c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999876543332 3678888777542 2 457899999999999975 46889999999
Q ss_pred EEEEEeCCCh--hhhhh----------------------------------------------------------hheec
Q psy125 300 AIIMFDVTSR--ITYKN----------------------------------------------------------YYDIS 319 (385)
Q Consensus 300 ~ilv~d~~~~--~s~~~----------------------------------------------------------~~e~S 319 (385)
+|+|||++++ .+++. |+|||
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 9999999998 22111 78999
Q ss_pred cccCCCchHHHHHHHHHHhcC
Q psy125 320 AKSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 320 ak~~~~v~~~f~~l~~~i~~~ 340 (385)
||+ .||.++|..++++++.+
T Consensus 156 Akd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp SSS-SHHHHHHHHHHTTSSTT
T ss_pred cCC-CcHHHHHHHHHHHHHhh
Confidence 998 59999999999988753
No 238
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=148.58 Aligned_cols=162 Identities=11% Similarity=0.001 Sum_probs=105.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc-----------cccch
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-----------FGGLR 75 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~-----------~~~~~ 75 (385)
.+.+||+|+|++|||||||+|+|++........+..++|..+........+..+.+|||||... +....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999998777665555556777666655555667899999999542 22233
Q ss_pred hhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHH---hcCCCCEEEEEeCCCCcchhhh--------HHHHHHHHhcCCe
Q psy125 76 DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR---VCENIPIVLCGNKVDIKDRKVK--------AKSIVFHRKKNLQ 144 (385)
Q Consensus 76 ~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~---~~~~~~~ilv~nK~Dl~~~~~~--------~~~~~~~~~~~~~ 144 (385)
..+++++|++|+|+|++...... ..++..+.. .....|+++|+||+|+...... .....+....+..
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~ 184 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR 184 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSS
T ss_pred HhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE
Confidence 34456789999999997543311 223333322 1134689999999998654321 2455667777778
Q ss_pred EEEEcCCCC-----CChHHHHHHHHHHHhcC
Q psy125 145 YYDISAKSN-----YNFEKPFLWLARKLIGD 170 (385)
Q Consensus 145 ~~~~Sa~~~-----~gi~~l~~~i~~~l~~~ 170 (385)
++.++...+ .++.+++..+...+..+
T Consensus 185 ~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 185 YCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 888876643 57888888888877553
No 239
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.75 E-value=4.9e-18 Score=139.23 Aligned_cols=112 Identities=19% Similarity=0.190 Sum_probs=85.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc------ccccccc--
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYYI-- 295 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~~~-- 295 (385)
.++++++|++|||||||++++....+.....++.+.+.....+..++ ..+.+|||||++++.. +...|++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999987666444334333333344444443 5789999999998863 3456775
Q ss_pred cCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHHH
Q psy125 296 QGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 296 ~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
+++++++|||+++..++.. |++|||++|.||+++|.+|+
T Consensus 81 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~ 160 (165)
T 2wji_A 81 KPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAIS 160 (165)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHH
T ss_pred CCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999766433 79999999999999999999
Q ss_pred HHH
Q psy125 335 RKL 337 (385)
Q Consensus 335 ~~i 337 (385)
+.+
T Consensus 161 ~~~ 163 (165)
T 2wji_A 161 IAV 163 (165)
T ss_dssp HHT
T ss_pred HHh
Confidence 876
No 240
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.75 E-value=1.1e-18 Score=165.65 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=111.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc-cccc--------chhhhh
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE-KFGG--------LRDGYY 79 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~-~~~~--------~~~~~~ 79 (385)
.++|+|+|.+|||||||+|+|++..+ ..+.+.+++|++.....+..++..+.+|||||.. .+.. ....++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 37999999999999999999777543 3445667777766544444456789999999987 5432 234577
Q ss_pred ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125 80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (385)
.++|++|+|+|++++.+++.. .++.. ..+.|+++|+||+|+.......+...+. ....+++++||+++.|++++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~-~il~~----l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL 395 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDR-KILER----IKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEKL 395 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHH-HHHHH----HTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHHH
T ss_pred hcccEEEEEecCCCCCCHHHH-HHHHH----hcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHHHH
Confidence 899999999999988766543 22222 2578999999999996532222222222 23358999999999999999
Q ss_pred HHHHHHHHh
Q psy125 160 FLWLARKLI 168 (385)
Q Consensus 160 ~~~i~~~l~ 168 (385)
+..|.+.+.
T Consensus 396 ~~~l~~~~~ 404 (482)
T 1xzp_A 396 EESIYRETQ 404 (482)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHh
Confidence 999998764
No 241
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.75 E-value=3.1e-18 Score=151.26 Aligned_cols=167 Identities=8% Similarity=0.009 Sum_probs=106.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccch-----------
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR----------- 75 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~----------- 75 (385)
.+.++|+|+|++|||||||+|+|++...........++|+........+.+..+.+|||||+.......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 467999999999999999999988766333222222245555444444556789999999986543321
Q ss_pred hhhhccCcEEEEEEeCCChhhh-hcHHHHHHHHHHhcCCCCEEEEEe-CCCCcchhhh--------HHHHHHHHhcCCe-
Q psy125 76 DGYYIQGQCAIIMFDVTSRITY-KNVPNWHRDLVRVCENIPIVLCGN-KVDIKDRKVK--------AKSIVFHRKKNLQ- 144 (385)
Q Consensus 76 ~~~~~~~d~illV~d~~~~~~~-~~~~~~~~~l~~~~~~~~~ilv~n-K~Dl~~~~~~--------~~~~~~~~~~~~~- 144 (385)
..+++.+|++|+|+|+++.... ..+..++..+.......|.++++| |+|+...... .....+.......
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 179 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRI 179 (260)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCE
T ss_pred HhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeE
Confidence 2266889999999999862211 112223333322111456776666 9998643211 1122233433332
Q ss_pred --E--EEEcCCCCCChHHHHHHHHHHHhcCCCc
Q psy125 145 --Y--YDISAKSNYNFEKPFLWLARKLIGDPNL 173 (385)
Q Consensus 145 --~--~~~Sa~~~~gi~~l~~~i~~~l~~~~~~ 173 (385)
+ +++||+++.|+++++..|...+...+..
T Consensus 180 ~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~ 212 (260)
T 2xtp_A 180 CAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGD 212 (260)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEecCcccccccHHHHHHHHHHHHHHHHhCCCC
Confidence 2 6789999999999999999998876533
No 242
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.75 E-value=1.7e-18 Score=163.96 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=108.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc----------cccch-h
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK----------FGGLR-D 76 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~-~ 76 (385)
..+||+++|++|||||||+|+|++..+ ....+..|+|++........++..+.+|||||+.+ +.... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT-EEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCc-eeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 468999999999999999999877543 23445667777765544444456799999999732 22222 2
Q ss_pred hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHH-----HHHhcCCeEEEEc
Q psy125 77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIV-----FHRKKNLQYYDIS 149 (385)
Q Consensus 77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~-----~~~~~~~~~~~~S 149 (385)
.++.++|++++|+|++++.+++.. .|...+.. .+.|+++|+||+|+..... ..+... +......+++++|
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S 329 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS 329 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence 467889999999999998777664 45555443 5799999999999865322 111211 1223456899999
Q ss_pred CCCCCChHHHHHHHHHHHhc
Q psy125 150 AKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~ 169 (385)
|++|.|+++++..+.+.+..
T Consensus 330 A~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 330 ALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TTTCTTGGGHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 243
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.74 E-value=3.3e-18 Score=146.46 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=70.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCe-eEEEEEeeCCCccccCc-ccccccccCcEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGG-LRDGYYIQGQCA 300 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~ 300 (385)
..+||+++|.+|||||+|+++++.+.|...+.++. .++.. +.+++. .+.+.||||||+++|.. ++..|++++|++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 45899999999999999999999988888776543 34433 555544 67899999999999988 888999999999
Q ss_pred EEEEeCCChh
Q psy125 301 IIMFDVTSRI 310 (385)
Q Consensus 301 ilv~d~~~~~ 310 (385)
|+|||+++..
T Consensus 83 i~v~d~~~~~ 92 (214)
T 2fh5_B 83 VFVVDSAAFQ 92 (214)
T ss_dssp EEEEETTTHH
T ss_pred EEEEECCCcC
Confidence 9999999854
No 244
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.74 E-value=7.3e-18 Score=162.73 Aligned_cols=114 Identities=25% Similarity=0.408 Sum_probs=98.0
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 301 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 301 (385)
...+|++++|.+|||||+|+++++.+.+. .+.+|++.++... ....+.+.||||||++.|..++..|++++|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEE----ESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEEE----EeCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 35799999999999999999999988764 4567887665543 335578999999999999999999999999999
Q ss_pred EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125 302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
+|||++++.+|++ |++|||++|.||+++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 474 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 474 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHH
Confidence 9999999999876 689999999999999
Q ss_pred HHHHHHHHhcC
Q psy125 330 FLWLARKLIGD 340 (385)
Q Consensus 330 f~~l~~~i~~~ 340 (385)
|++|++.+.+.
T Consensus 475 ~~~l~~~~~~~ 485 (497)
T 3lvq_E 475 LTWLTSNYKSK 485 (497)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHHHhc
Confidence 99999987443
No 245
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.74 E-value=8.1e-18 Score=153.06 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=112.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccc----cccchhhhh---ccC
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEK----FGGLRDGYY---IQG 82 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~----~~~~~~~~~---~~~ 82 (385)
+|+|+|.+|||||||+|+|+..... ....+.+|.......+... ...+.+|||||+.. ...+...++ ..+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~--i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCc--cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 6899999999999999997764421 1223333433333333322 26789999999642 333444444 459
Q ss_pred cEEEEEEeCCC---hhhhhcHHHHHHHHHHhc---CCCCEEEEEeCCCCcchhhhHHHHHHHHhcC--CeEEEEcCCCCC
Q psy125 83 QCAIIMFDVTS---RITYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN--LQYYDISAKSNY 154 (385)
Q Consensus 83 d~illV~d~~~---~~~~~~~~~~~~~l~~~~---~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~ 154 (385)
+++|+|+|+++ ...++.+..|..++.... .++|+++|+||+|+..... ....+..... .+++++||+++.
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e--~~~~l~~~l~~~~~v~~iSA~tg~ 315 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE--NLEAFKEKLTDDYPVFPISAVTRE 315 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH--HHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH--HHHHHHHHhhcCCCEEEEECCCCc
Confidence 99999999988 667777777887777642 4789999999999875432 2233444433 578999999999
Q ss_pred ChHHHHHHHHHHHhcCCC
Q psy125 155 NFEKPFLWLARKLIGDPN 172 (385)
Q Consensus 155 gi~~l~~~i~~~l~~~~~ 172 (385)
|+++++..|.+.+...+.
T Consensus 316 gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 316 GLRELLFEVANQLENTPE 333 (342)
T ss_dssp TTHHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHHHHHHhhCcc
Confidence 999999999999876543
No 246
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.73 E-value=5.1e-17 Score=152.24 Aligned_cols=163 Identities=15% Similarity=0.079 Sum_probs=111.8
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEE--------E-----------EEeCCeeEEEEEEe
Q psy125 4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL--------V-----------FHTNRGAIRFNVWD 64 (385)
Q Consensus 4 ~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~--------~-----------~~~~~~~~~~~i~D 64 (385)
.+..+.++|+++|++|+|||||+|+|++..... .......+.... . .........+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 345678999999999999999999977632221 000111100000 0 00011237899999
Q ss_pred CCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH----HHHHHHHh
Q psy125 65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----KSIVFHRK 140 (385)
Q Consensus 65 t~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~----~~~~~~~~ 140 (385)
|||++.+.......+.++|++|+|+|+++..++.....++..+.. ....|+++++||+|+....... +..++...
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHH-cCCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 999999888888889999999999999987655555555544433 2456899999999997654322 22222221
Q ss_pred ---cCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 141 ---KNLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 141 ---~~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
...+++++||+++.|+++++..|.+.+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 1458999999999999999999998753
No 247
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.73 E-value=3.5e-18 Score=143.97 Aligned_cols=113 Identities=12% Similarity=0.215 Sum_probs=87.4
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCC----------ccccCccccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG----------QEKFGGLRDG 292 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~ 292 (385)
..++|+++|.+|||||||+++++.+.|...+.+++|++........++ .+.+||||| ++.+..++..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 568999999999999999999998888888888888887766666654 479999999 7777777888
Q ss_pred ccccC---cEEEEEEeCCChhhhhh-----------------------------------------------hheecccc
Q psy125 293 YYIQG---QCAIIMFDVTSRITYKN-----------------------------------------------YYDISAKS 322 (385)
Q Consensus 293 ~~~~~---~~~ilv~d~~~~~s~~~-----------------------------------------------~~e~Sak~ 322 (385)
|++.+ |++++|||++++.++.+ |++|||++
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSET 178 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTT
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccC
Confidence 88877 99999999999877766 78999999
Q ss_pred CCCchHHHHHHHHHHh
Q psy125 323 NYNFEKPFLWLARKLI 338 (385)
Q Consensus 323 ~~~v~~~f~~l~~~i~ 338 (385)
|.||+++|.+|++.+.
T Consensus 179 ~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 179 KKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999998774
No 248
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=8.7e-18 Score=160.06 Aligned_cols=159 Identities=17% Similarity=0.130 Sum_probs=108.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCC----------ccccccchh
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG----------QEKFGGLRD 76 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g----------~~~~~~~~~ 76 (385)
...++|+++|.+|+|||||+|+|++.. .....+.+|+|++.........+..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEE-RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTST-TEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCC-ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 456899999999999999999977643 234456667777654444444456899999999 344433333
Q ss_pred -hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhc-----CCeEEEE
Q psy125 77 -GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKK-----NLQYYDI 148 (385)
Q Consensus 77 -~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~-----~~~~~~~ 148 (385)
.++.++|++|+|+|+++....+. ..|...+.. .++|+++|+||+|+..... ..+..+..... ..+++++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 348 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 46789999999999988544322 234444433 5799999999999865322 22233333322 4689999
Q ss_pred cCCCCCChHHHHHHHHHHHhc
Q psy125 149 SAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
||+++.|+++++..+.+.+..
T Consensus 349 SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 349 SALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 249
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.4e-18 Score=152.78 Aligned_cols=117 Identities=19% Similarity=0.266 Sum_probs=90.7
Q ss_pred CCeeEEEEECCC---------CCCHHHHHHHHhc---Cccccccccce-eeEEEEEEE--------------EeCCeeEE
Q psy125 222 MPSFKCVLVGDG---------GTGKTTFVKRHLT---GEFEKKYVATL-GVEVHPLVF--------------HTNRGAIR 274 (385)
Q Consensus 222 ~~~~~i~~~G~~---------~vgks~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~~~ 274 (385)
...+||+++|.+ |||||+|+++++. +.+...+.++. +.++..+.+ .+++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 456999999999 9999999999998 56666666664 333222211 13566788
Q ss_pred EEEee-----------------------CCCccccCcccccccc---------------------cCcEEEEEEeCCCh-
Q psy125 275 FNVWD-----------------------TAGQEKFGGLRDGYYI---------------------QGQCAIIMFDVTSR- 309 (385)
Q Consensus 275 l~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~~~~~ilv~d~~~~- 309 (385)
+.||| ++|+++|..++..||+ +||++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 8899999999999998 89999999999998
Q ss_pred -hhhhh------------------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125 310 -ITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARKLI 338 (385)
Q Consensus 310 -~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~ 338 (385)
.||++ |++|||++|.||+++|.+|++.+.
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 88876 789999999999999999999874
No 250
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.71 E-value=3.3e-18 Score=161.80 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=101.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhhc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYI 80 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~~ 80 (385)
.++|+|+|++|||||||+|+|++..+ ..+...+++|++........++..+.+|||||....... ...++.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDR-AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHB-SCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 57999999999999999999877543 223344566655433223334577899999997544322 233578
Q ss_pred cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125 81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (385)
++|++++|+|++++.+... ..++..+ ...|+++|+||+|+...........+ ....+++++||+++.|+++++
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~--~~~~~~i~iSAktg~Gi~eL~ 375 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYP--ENITQIVHTAAAQKQGIDSLE 375 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCC--TTCCCEEEEBTTTTBSHHHHH
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHh--ccCCcEEEEECCCCCCHHHHH
Confidence 8999999999998765433 2333333 45799999999998765432211111 134589999999999999999
Q ss_pred HHHHHHHhcC
Q psy125 161 LWLARKLIGD 170 (385)
Q Consensus 161 ~~i~~~l~~~ 170 (385)
..|.+.+...
T Consensus 376 ~~i~~~~~~~ 385 (462)
T 3geh_A 376 TAILEIVQTG 385 (462)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhcc
Confidence 9999987543
No 251
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.71 E-value=4.9e-17 Score=154.14 Aligned_cols=158 Identities=17% Similarity=0.129 Sum_probs=104.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc------------h
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL------------R 75 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~------------~ 75 (385)
..++|+|+|++|||||||+|+|++.. ...+.+.+|+|++.....+...+..+.+|||+|....... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~-~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST-TEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc-ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 45899999999999999999977654 3345667788877655444444457889999997432211 1
Q ss_pred hhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHH-----HHHHhcCCeEEEE
Q psy125 76 DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSI-----VFHRKKNLQYYDI 148 (385)
Q Consensus 76 ~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~-----~~~~~~~~~~~~~ 148 (385)
..++..+|++++|+|+.+..+.+.. .+...+.. .+.|+++++||+|+..... ..+.. .+......+++++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 2356789999999999876554431 22222222 5789999999999865332 11111 1222345689999
Q ss_pred cCCCCCChHHHHHHHHHHHhc
Q psy125 149 SAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
||++|.|+++++..+.+.+..
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887644
No 252
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.71 E-value=3.4e-17 Score=135.17 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=85.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCcccccccccee--eEEEEEEEEeCCeeEEEEEeeCCCccccCccc--------cc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR--------DG 292 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~ 292 (385)
...||+++|.+|||||||++++....+.. ..+..+ .++....+.+++. .+.+|||||++++.... ..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI-VTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce-eeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHH
Confidence 34799999999999999999988665321 122222 2344555566653 47899999997653221 13
Q ss_pred ccccCcEEEEEEeCCChhhhhh----------------------------------------hheeccccCCCchHHHHH
Q psy125 293 YYIQGQCAIIMFDVTSRITYKN----------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 293 ~~~~~~~~ilv~d~~~~~s~~~----------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
+++++|++|+|||++++.||+. |++|||++|.||+++|.+
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 159 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNH 159 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHHH
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhhhhccCCceEEEeCCCCCCHHHHHHH
Confidence 6899999999999999888755 799999999999999999
Q ss_pred HHHHHhc
Q psy125 333 LARKLIG 339 (385)
Q Consensus 333 l~~~i~~ 339 (385)
|++.+..
T Consensus 160 l~~~~~~ 166 (172)
T 2gj8_A 160 LKQSMGF 166 (172)
T ss_dssp HHHHC--
T ss_pred HHHHhhh
Confidence 9987644
No 253
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.71 E-value=6.8e-17 Score=156.97 Aligned_cols=157 Identities=14% Similarity=0.157 Sum_probs=107.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCC--CC-----Ccc------cccceeeeEEEEEEe-----CCeeEEEEEEeCCCccc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGE--FE-----KKY------VATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEK 70 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~--~~-----~~~------~~~~g~t~~~~~~~~-----~~~~~~~~i~Dt~g~~~ 70 (385)
..+|+|+|+.|+|||||+++|+... .. ..+ ....|.|........ ++..+.+++|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4689999999999999999987621 11 111 123455555433333 34468999999999999
Q ss_pred cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEEE
Q psy125 71 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYYD 147 (385)
Q Consensus 71 ~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~ 147 (385)
+...+..++..+|++|+|+|+++...++....|..... .++|+++++||+|+..........++....+. .++.
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~ 160 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR 160 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEE
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEE
Confidence 88888888999999999999999877776666665443 47899999999999764332222334444444 4899
Q ss_pred EcCCCCCChHHHHHHHHHHHh
Q psy125 148 ISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
+||+++.|+++++..|.+.+.
T Consensus 161 vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 161 CSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp ECTTTCTTHHHHHHHHHHHSC
T ss_pred eecccCCCchhHHHHHhhcCC
Confidence 999999999999999998763
No 254
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.71 E-value=3.9e-17 Score=156.53 Aligned_cols=153 Identities=22% Similarity=0.193 Sum_probs=104.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCC-----------------------------CCcccccceeeeEEEEEEeCCee
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYVATLGVEVHPLVFHTNRGA 57 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~-----------------------------~~~~~~~~g~t~~~~~~~~~~~~ 57 (385)
.+.+||+++|++|+|||||+++|+.... ........|+|.+..........
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3569999999999999999999875411 01112234677777777777778
Q ss_pred EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhh-----cHHHHHHHHHHhcCCCCEEEEEeCCCCcch--hh
Q psy125 58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK-----NVPNWHRDLVRVCENIPIVLCGNKVDIKDR--KV 130 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~-----~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--~~ 130 (385)
..+.+|||||++++...+..++.++|++|+|+|+++...+. ....+...+.......|+++|+||+|+... ..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 89999999999999888888999999999999999864321 112222233333344579999999998752 11
Q ss_pred ----hHHHHHHHHhc-----CCeEEEEcCCCCCChHHH
Q psy125 131 ----KAKSIVFHRKK-----NLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 131 ----~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l 159 (385)
..+...+.... ..+++++||+++.|+.++
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 12222222222 357899999999998753
No 255
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.70 E-value=6.4e-17 Score=154.46 Aligned_cols=161 Identities=17% Similarity=0.086 Sum_probs=108.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcCCC----C-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhh
Q psy125 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEF----E-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYY 79 (385)
Q Consensus 5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~----~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~ 79 (385)
+.|+.++|+++|+.++|||||+++|++... . .......|+|.+............+.+|||||++.+...+...+
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHT
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHH
Confidence 346789999999999999999999876541 1 11123344554433322222457899999999998877788888
Q ss_pred ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHHhc----CCeEEEEcCC
Q psy125 80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHRKK----NLQYYDISAK 151 (385)
Q Consensus 80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~~----~~~~~~~Sa~ 151 (385)
.++|++|+|+|+++....+.. .++..+.. .+.|.++++||+|+..... ..+...+.... ..+++++||+
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~-e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~ 171 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTG-EHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 171 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred hhCCEEEEEEecCCCccHHHH-HHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECc
Confidence 999999999999884322221 22222222 4688899999999975332 22333444333 4689999999
Q ss_pred CCCChHHHHHHHHHHHh
Q psy125 152 SNYNFEKPFLWLARKLI 168 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~l~ 168 (385)
++.|+++++..|.+.+.
T Consensus 172 ~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 172 TGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhc
Confidence 99999999999999774
No 256
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=1.2e-16 Score=133.72 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=91.8
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC------cccccccc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG------GLRDGYYI 295 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~ 295 (385)
...++++++|.+|||||||++++....+.....++...+.....+..+ +..+.+|||||++.+. .+...|++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 456899999999999999999998776655544554444444455544 4678999999999885 34556665
Q ss_pred --cCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHH
Q psy125 296 --QGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 296 --~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
.++++++|+|.++..+... |++|||++|.||+++|.+
T Consensus 83 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (188)
T 2wjg_A 83 NEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKA 162 (188)
T ss_dssp HHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHH
T ss_pred ccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHH
Confidence 4999999999987655433 899999999999999999
Q ss_pred HHHHHhcCC
Q psy125 333 LARKLIGDP 341 (385)
Q Consensus 333 l~~~i~~~~ 341 (385)
+++.+....
T Consensus 163 i~~~~~~~~ 171 (188)
T 2wjg_A 163 ISIAVKDKK 171 (188)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHhcc
Confidence 999886653
No 257
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.69 E-value=2.2e-17 Score=134.45 Aligned_cols=110 Identities=22% Similarity=0.215 Sum_probs=81.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeE--EEEEEEEeCCeeEEEEEeeCCCcccc-------Ccccccccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAGQEKF-------GGLRDGYYI 295 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~ 295 (385)
.|++++|.+|||||++++++..+.+. ......+++ .....+..++ ..+.+|||||+..+ ...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA-VVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee-eccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 58999999999999999999877643 122233333 3333444444 46899999999874 333445789
Q ss_pred cCcEEEEEEeCCChhhhhh----------------------------------------hheeccccCCCchHHHHHHHH
Q psy125 296 QGQCAIIMFDVTSRITYKN----------------------------------------YYDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 296 ~~~~~ilv~d~~~~~s~~~----------------------------------------~~e~Sak~~~~v~~~f~~l~~ 335 (385)
.+|++|+|||++++.++.. |++|||++|.||+++|.+|++
T Consensus 79 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWE 158 (161)
T ss_dssp TCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred hCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHHHHH
Confidence 9999999999999755543 799999999999999999998
Q ss_pred HH
Q psy125 336 KL 337 (385)
Q Consensus 336 ~i 337 (385)
.+
T Consensus 159 ~l 160 (161)
T 2dyk_A 159 RL 160 (161)
T ss_dssp HC
T ss_pred hC
Confidence 75
No 258
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.69 E-value=3.3e-16 Score=147.97 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=107.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCC--C---------------------------CcccccceeeeEEEEEEeCCe
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYVATLGVEVHPLVFHTNRG 56 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~--~---------------------------~~~~~~~g~t~~~~~~~~~~~ 56 (385)
..+.++|+++|++|+|||||+++|+.... . .......|+|.+.........
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35679999999999999999999854311 0 001123577887777777777
Q ss_pred eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhh---hh---cHHHHHHHHHHhcCCCC-EEEEEeCCCCcch-
Q psy125 57 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRIT---YK---NVPNWHRDLVRVCENIP-IVLCGNKVDIKDR- 128 (385)
Q Consensus 57 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~---~~---~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~- 128 (385)
...+.+|||||++++...+...+.++|++|+|+|+++... +. .....+..+ .. .+.| +++++||+|+...
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~-~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT-AGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH-cCCCeEEEEeecCCCcccc
Confidence 7899999999999988888888999999999999988642 11 111222222 12 3566 8999999998531
Q ss_pred ---h----hhHHHHHHHHhc------CCeEEEEcCCCCCChHHHHH
Q psy125 129 ---K----VKAKSIVFHRKK------NLQYYDISAKSNYNFEKPFL 161 (385)
Q Consensus 129 ---~----~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 161 (385)
. ...+...+.... ..+++++||++|.|+.++..
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 122233333333 34799999999999988654
No 259
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.9e-17 Score=137.35 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=86.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCccc-ccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhcc----
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYV-ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ---- 81 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~-~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~---- 81 (385)
.+.++|+++|++|||||||+|+|++..+..... ..++.+ .+...+.+.+|||||...+...+..++.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 118 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 118 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-------eeecCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence 456899999999999999999988876543111 111111 11245678899999999887777777765
Q ss_pred CcEEEEEEeCC-ChhhhhcHHHHHHHHHHh-----cCCCCEEEEEeCCCCcchhh
Q psy125 82 GQCAIIMFDVT-SRITYKNVPNWHRDLVRV-----CENIPIVLCGNKVDIKDRKV 130 (385)
Q Consensus 82 ~d~illV~d~~-~~~~~~~~~~~~~~l~~~-----~~~~~~ilv~nK~Dl~~~~~ 130 (385)
+|++++|+|++ +..++..+..|+..+... ..+.|+++|+||+|+.....
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 888888777777666542 24799999999999875443
No 260
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.69 E-value=7.5e-17 Score=155.01 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=86.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCC--------------Ccc------cccceeeeEEEEEEeCCeeEEEEEEeCCC
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFE--------------KKY------VATLGVEVHPLVFHTNRGAIRFNVWDTAG 67 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~--------------~~~------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g 67 (385)
+..+|+|+|++|||||||+|+|+...-. ... ....|+|.........++.+.+++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 4579999999999999999998621100 000 11245555555556666778999999999
Q ss_pred ccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125 68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 127 (385)
Q Consensus 68 ~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~ 127 (385)
+.++......+++.+|++|+|+|+++....+....|. .+. ..++|+++++||+|+..
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~--~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR--LRHTPIMTFINKMDRDT 148 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH--TTTCCEEEEEECTTSCC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH--HcCCCEEEEEeCCCCcc
Confidence 9998888888999999999999999876665544443 222 24789999999999864
No 261
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.69 E-value=1.7e-16 Score=153.90 Aligned_cols=158 Identities=16% Similarity=0.229 Sum_probs=109.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC--CCC-----Cccc------ccceeeeEEEEEEe-----CCeeEEEEEEeCCCcc
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTG--EFE-----KKYV------ATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQE 69 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~--~~~-----~~~~------~~~g~t~~~~~~~~-----~~~~~~~~i~Dt~g~~ 69 (385)
+..+|+|+|+.|+|||||+++|+.. ... ..+. ...|.|........ ++..+.+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3569999999999999999998752 111 1111 12344443221111 3446899999999999
Q ss_pred ccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEE
Q psy125 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYY 146 (385)
Q Consensus 70 ~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 146 (385)
++...+..++..+|++|+|+|+++....+....|..... .++|+++++||+|+..........++....+. .++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi 161 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI 161 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence 988888888999999999999999877776666655443 58899999999999754332223334444444 489
Q ss_pred EEcCCCCCChHHHHHHHHHHHh
Q psy125 147 DISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 147 ~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
.+||+++.|+++++..|.+.+.
T Consensus 162 ~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 162 LASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeecCCCchHHHHHHHHhcc
Confidence 9999999999999999998764
No 262
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.68 E-value=6.1e-17 Score=139.99 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=84.7
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc------c----cCcccc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE------K----FGGLRD 291 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~------~----~~~~~~ 291 (385)
...++|+++|.+|||||+|+++++.+.+... +..+++..............+.||||||+. + +.. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 3568999999999999999999998776522 223333322222222234678999999993 3 222 22
Q ss_pred cccccCcEEEEEEeCCChhhhhh------------------------------------------------------hhe
Q psy125 292 GYYIQGQCAIIMFDVTSRITYKN------------------------------------------------------YYD 317 (385)
Q Consensus 292 ~~~~~~~~~ilv~d~~~~~s~~~------------------------------------------------------~~e 317 (385)
.++..+|++|+|||++++.+|+. |++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 35788999999999999988652 589
Q ss_pred eccccCCCchHHHHHHHHHHhcC
Q psy125 318 ISAKSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 318 ~Sak~~~~v~~~f~~l~~~i~~~ 340 (385)
|||++|.||+++|.+|++.+...
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 263
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.68 E-value=4.1e-16 Score=138.38 Aligned_cols=173 Identities=14% Similarity=0.114 Sum_probs=110.4
Q ss_pred EeCCCcc-ccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhc
Q psy125 63 WDTAGQE-KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK 141 (385)
Q Consensus 63 ~Dt~g~~-~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~ 141 (385)
...||+. .........+.++|+++.|+|++++.+..+. .+.. ...++|.++|+||+|+........+.+++...
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~---~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~ 78 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIED---ILKNKPRIMLLNKADKADAAVTQQWKEHFENQ 78 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHH---HCSSSCEEEEEECGGGSCHHHHHHHHHHHHTT
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHH---HHCCCCEEEEEECcccCCHHHHHHHHHHHHhc
Confidence 3467764 3444556678999999999999998877541 1222 22689999999999998755455555666556
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCC
Q psy125 142 NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMD 221 (385)
Q Consensus 142 ~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 221 (385)
+.+++.+|+.++.|+.+++..+.+.+... ... .. .....
T Consensus 79 g~~~i~iSA~~~~gi~~L~~~i~~~l~~~-----------------------------~~~-~~-----------~~~~~ 117 (282)
T 1puj_A 79 GIRSLSINSVNGQGLNQIVPASKEILQEK-----------------------------FDR-MR-----------AKGVK 117 (282)
T ss_dssp TCCEEECCTTTCTTGGGHHHHHHHHHHHH-----------------------------HHH-HH-----------HTTCC
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHHHH-----------------------------HHH-HH-----------hcCCC
Confidence 77899999999999999888777665211 000 00 01122
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 285 (385)
...++++++|.+||||||++|++... ....+.+.+|+|...+.+.++. .+.+|||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETT---TEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence 34589999999999999999997743 4455667788887776665543 368999999753
No 264
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.68 E-value=8.8e-17 Score=145.06 Aligned_cols=113 Identities=27% Similarity=0.373 Sum_probs=94.9
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcC--ccc-cccccceeeEEEEEEEEeCCeeEEEEEeeCCCcccc-----Cccccccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-----GGLRDGYY 294 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~ 294 (385)
..+||+++|.+|||||+|+++++.+ .+. ..+.+|++..+.... +++ .+.+.||||||++++ ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~--~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR--FLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEE--ETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEE--eCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 3589999999999999999998876 332 256677776665433 343 678999999999998 78889999
Q ss_pred ccCcEEEEEEeCCChhhhhh-----------------------------------------------------------h
Q psy125 295 IQGQCAIIMFDVTSRITYKN-----------------------------------------------------------Y 315 (385)
Q Consensus 295 ~~~~~~ilv~d~~~~~s~~~-----------------------------------------------------------~ 315 (385)
+++|++|+|||++++.||++ |
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999998876 6
Q ss_pred heeccccCCCchHHHHHHHHHHhc
Q psy125 316 YDISAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 316 ~e~Sak~~~~v~~~f~~l~~~i~~ 339 (385)
++|||++ .|+.++|..+++.+..
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 8999999 8999999999987654
No 265
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.68 E-value=1.1e-16 Score=142.33 Aligned_cols=157 Identities=16% Similarity=0.224 Sum_probs=88.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCc-c-------cccceeeeEEEEEEeCCeeEEEEEEeCCCcccc-------c
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-Y-------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-------G 72 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~-~-------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~-------~ 72 (385)
..++|+|+|.+|+|||||+|+|++...... + .++.+.+.........+..+.+.+|||||.... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 468999999999999999999776544332 2 344444444444444444579999999997322 1
Q ss_pred cch-------hhhhc-------------cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh-
Q psy125 73 GLR-------DGYYI-------------QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK- 131 (385)
Q Consensus 73 ~~~-------~~~~~-------------~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~- 131 (385)
.+. ..++. ++|+++++++.........-..++..+. .+.|+++|+||+|+......
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~---~~~pvi~V~nK~D~~~~~e~~ 163 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQ 163 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT---TTSCEEEEESSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh---ccCCEEEEEeccCCCCHHHHH
Confidence 111 22222 3678888887655321111122333332 38999999999998654332
Q ss_pred ---HHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125 132 ---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 132 ---~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l 167 (385)
..+.......+.+++.+|+.++.|+++++..|...+
T Consensus 164 ~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 164 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 233444556678899999999999999988887754
No 266
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.67 E-value=4e-18 Score=163.12 Aligned_cols=156 Identities=18% Similarity=0.183 Sum_probs=109.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC-eeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 86 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il 86 (385)
+.++|+++|++|+|||||+++|.+..+.... ..|+|.+........ .+..+.+|||||++.+...+..++..+|++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~--~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAME--AGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSS--SCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccc--CCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 4579999999999999999998775543332 234444333333322 3457899999999999999988999999999
Q ss_pred EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHH---Hh--cCCeEEEEcCCCCCChHH
Q psy125 87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFH---RK--KNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~---~~--~~~~~~~~Sa~~~~gi~~ 158 (385)
+|+|+++....+....| ..+. ..+.|+++++||+|+..... ......+. .. ...+++++||+++.|+++
T Consensus 81 LVVDa~dg~~~qt~e~l-~~~~--~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 81 LVVAADDGVMKQTVESI-QHAK--DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp EECBSSSCCCHHHHHHH-HHHH--TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEEECCCCccHHHHHHH-HHHH--HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 99999986655443322 2222 25789999999999864322 12222110 01 123789999999999999
Q ss_pred HHHHHHHHHh
Q psy125 159 PFLWLARKLI 168 (385)
Q Consensus 159 l~~~i~~~l~ 168 (385)
++..|...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999988763
No 267
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.67 E-value=4e-16 Score=143.35 Aligned_cols=156 Identities=17% Similarity=0.073 Sum_probs=99.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc---------cccchhhhhcc
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK---------FGGLRDGYYIQ 81 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~---------~~~~~~~~~~~ 81 (385)
.|+|+|++|||||||+|+|.+... .....++.|++.....+...+..+.+|||+|... +.. ....+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~--~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~-tl~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ--KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFV-TLSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHH-HHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc--cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHH-HHHHHHh
Confidence 399999999999999999877653 2234445555443333333336789999999632 111 1224678
Q ss_pred CcEEEEEEeCCChh--hhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhhhH---HHHHHHHhc---CCeEEEEcCCC
Q psy125 82 GQCAIIMFDVTSRI--TYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKA---KSIVFHRKK---NLQYYDISAKS 152 (385)
Q Consensus 82 ~d~illV~d~~~~~--~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~~~---~~~~~~~~~---~~~~~~~Sa~~ 152 (385)
+|++++|+|++++. .......|...+... ..+.|+++|+||+|+....... ....+.... ..+++++|+++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999998876 444444444444332 2578999999999986532111 111222332 23678999999
Q ss_pred CCChHHHHHHHHHHHhc
Q psy125 153 NYNFEKPFLWLARKLIG 169 (385)
Q Consensus 153 ~~gi~~l~~~i~~~l~~ 169 (385)
+.|+++++..|.+.+..
T Consensus 338 g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcc
Confidence 99999999999887654
No 268
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.66 E-value=2.7e-16 Score=138.09 Aligned_cols=114 Identities=16% Similarity=0.033 Sum_probs=91.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc------cccc--
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR------DGYY-- 294 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------~~~~-- 294 (385)
..++|+++|.+|||||||++++.+..+.. ...+|++...+...+......+.||||||+..+...+ ..|+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~--~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYV--ANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEE--EECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcc--cCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 45899999999999999999998766543 2334556655555555445789999999999887643 4565
Q ss_pred ccCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHH
Q psy125 295 IQGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 295 ~~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
..+|++|+|+|+++..+... |++|||++|.||+++|.+|
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i 161 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKI 161 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHH
T ss_pred cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHH
Confidence 58999999999999776554 8999999999999999999
Q ss_pred HHHHh
Q psy125 334 ARKLI 338 (385)
Q Consensus 334 ~~~i~ 338 (385)
++.+.
T Consensus 162 ~~~~~ 166 (258)
T 3a1s_A 162 VEYAQ 166 (258)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99765
No 269
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.66 E-value=2.3e-15 Score=141.26 Aligned_cols=161 Identities=16% Similarity=0.089 Sum_probs=98.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCC---CCCcccc--cceeeeEEEEEEe-------------C--C----eeEEEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGE---FEKKYVA--TLGVEVHPLVFHT-------------N--R----GAIRFNV 62 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~---~~~~~~~--~~g~t~~~~~~~~-------------~--~----~~~~~~i 62 (385)
.+.++|+++|+.++|||||+++|.+.. +.....+ |....+....... . + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 457999999999999999999977432 1122112 2222221111110 0 1 1378999
Q ss_pred EeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHH
Q psy125 63 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFH 138 (385)
Q Consensus 63 ~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~ 138 (385)
|||||++.+...+...+..+|++|+|+|+++..........+..+ ......|+++++||+|+..... ..++.++.
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l 164 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFV 164 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 999999887766666778899999999999653111111222222 2224468999999999865432 23334444
Q ss_pred Hh---cCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 139 RK---KNLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 139 ~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
.. ...+++++||+++.|+++++..|...+.
T Consensus 165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 33 3568999999999999999999988654
No 270
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.66 E-value=4.9e-16 Score=143.22 Aligned_cols=143 Identities=8% Similarity=0.004 Sum_probs=105.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d 90 (385)
+|+++|++++|||||+++|+ ..|.|.+............+.+|||||++++.......+.++|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999976 34566665566667677789999999999887777778899999999999
Q ss_pred CCChhhhhcHHHHHHHHHHhcCCCCE-EEEEe-CCCCcchhhh----HHHHHHHHhc---CCeEEE--EcCCC---CCCh
Q psy125 91 VTSRITYKNVPNWHRDLVRVCENIPI-VLCGN-KVDIKDRKVK----AKSIVFHRKK---NLQYYD--ISAKS---NYNF 156 (385)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~-ilv~n-K~Dl~~~~~~----~~~~~~~~~~---~~~~~~--~Sa~~---~~gi 156 (385)
+... ......+...+.. .+.|. ++++| |+|+ ..... .+..++.... ..++++ +||++ +.|+
T Consensus 93 -~~g~-~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 93 -PQGL-DAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp -TTCC-CHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred -CCCC-cHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 5432 2223344433332 36677 88899 9999 54321 2233333322 358999 99999 9999
Q ss_pred HHHHHHHHHHHh
Q psy125 157 EKPFLWLARKLI 168 (385)
Q Consensus 157 ~~l~~~i~~~l~ 168 (385)
++++..|...+.
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988763
No 271
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.66 E-value=5.8e-16 Score=146.42 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=102.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCC--CCc----------cccc-------------------ceeeeEEEEEEeCC
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEF--EKK----------YVAT-------------------LGVEVHPLVFHTNR 55 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~--~~~----------~~~~-------------------~g~t~~~~~~~~~~ 55 (385)
.+.++|+++|+.|+|||||+++|+.+.. ... ...+ .|+|.+........
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3458999999999999999999876431 000 0011 24455544445555
Q ss_pred eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcch--h----
Q psy125 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR--K---- 129 (385)
Q Consensus 56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--~---- 129 (385)
....+.+|||||++.+...+..++.++|++|+|+|+++....+. ..++..+. .....++++|+||+|+... .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~-~~~~~~iIvviNK~Dl~~~~~~~~~~ 179 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIAS-LLGIKHIVVAINKMDLNGFDERVFES 179 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHH-HTTCCEEEEEEECTTTTTSCHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHH-HcCCCeEEEEEEcCcCCcccHHHHHH
Confidence 67889999999999888778888999999999999998653332 23333222 2223358999999998752 1
Q ss_pred hhHHHHHHHHhcC-----CeEEEEcCCCCCChHHH
Q psy125 130 VKAKSIVFHRKKN-----LQYYDISAKSNYNFEKP 159 (385)
Q Consensus 130 ~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 159 (385)
...+...+....+ .+++++||+++.|+.++
T Consensus 180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1233444555555 57899999999998764
No 272
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.66 E-value=6.2e-17 Score=145.88 Aligned_cols=194 Identities=11% Similarity=0.094 Sum_probs=114.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccce----------------------eeeEE------------
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLG----------------------VEVHP------------ 48 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g----------------------~t~~~------------ 48 (385)
...++|+|+|.+|||||||+|+|++..+.+. ....++ ++++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 4567999999999999999999888765421 122232 11110
Q ss_pred -----------EEEEeC-CeeEEEEEEeCCCccc-------------cccchhhhhccCcEEE-EEEeCCChhhhhcHHH
Q psy125 49 -----------LVFHTN-RGAIRFNVWDTAGQEK-------------FGGLRDGYYIQGQCAI-IMFDVTSRITYKNVPN 102 (385)
Q Consensus 49 -----------~~~~~~-~~~~~~~i~Dt~g~~~-------------~~~~~~~~~~~~d~il-lV~d~~~~~~~~~~~~ 102 (385)
...... .....+.+|||||... +..+...++.+++.++ +|+|+++.........
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000000 0136789999999742 2234456777888776 6899987655443333
Q ss_pred HHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHH-HHhc--C-CeEEEEcCCCCCChHHHHHHHHHHHhcCCCccccc
Q psy125 103 WHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVF-HRKK--N-LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 177 (385)
Q Consensus 103 ~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~-~~~~--~-~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~ 177 (385)
+...+.. .+.|+++|+||+|+..... ......- .... + .+++.+||+++.|+++++..|.+...
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~--------- 252 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK--------- 252 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH---------
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH---------
Confidence 4444322 4789999999999865433 1211110 0000 1 25778999999999999998877321
Q ss_pred CCCCCCCCCCCChhhh---hhhHHhHHHHHHhcCCCCch
Q psy125 178 MPALLPPEVTMDPQWQ---SRIEQDLKEAQETALPDDDE 213 (385)
Q Consensus 178 ~~~~~ep~~~~d~~~~---~~~~~~l~~~~~~~~~~~~~ 213 (385)
+++......+...+ ..+.+.+++.....+..+.|
T Consensus 253 --~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP 289 (299)
T 2aka_B 253 --FFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLP 289 (299)
T ss_dssp --HHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhH
Confidence 12122222223333 56666666666554444444
No 273
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.66 E-value=3.6e-16 Score=146.09 Aligned_cols=157 Identities=13% Similarity=0.043 Sum_probs=110.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------cccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGE-------FEK-------KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG 73 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~-------~~~-------~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~ 73 (385)
+.++|+++|+.|+|||||+++|+... +.. ......|.|.+............+.+|||||++++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999987631 100 0112456666665555666678899999999998877
Q ss_pred chhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcc-hhh----hHHHHHHHHhcC-----
Q psy125 74 LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKD-RKV----KAKSIVFHRKKN----- 142 (385)
Q Consensus 74 ~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~-~~~----~~~~~~~~~~~~----- 142 (385)
.+..++..+|++|+|+|+++....+....| ..+.. .+.| +++++||+|+.. ... ..+..++....+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 777888999999999999986544333223 22222 4677 689999999874 211 223444554443
Q ss_pred CeEEEEcCCCCCC----------hHHHHHHHHHHH
Q psy125 143 LQYYDISAKSNYN----------FEKPFLWLARKL 167 (385)
Q Consensus 143 ~~~~~~Sa~~~~g----------i~~l~~~i~~~l 167 (385)
.+++++||+++.| +++++..|...+
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999998664 677888777765
No 274
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.66 E-value=1.2e-15 Score=143.29 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=104.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCC---CCCcccccceeeeEE----EEEEe-------------C--C----eeEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGE---FEKKYVATLGVEVHP----LVFHT-------------N--R----GAIRF 60 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~---~~~~~~~~~g~t~~~----~~~~~-------------~--~----~~~~~ 60 (385)
.+.++|+++|+.++|||||+++|++.. +.... ..|+|... ..... . . ....+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~--~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEEL--RRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGG--GSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhh--cCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 456899999999999999999977432 12221 22333321 11110 0 1 13789
Q ss_pred EEEeCCCccccccchhhhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHH
Q psy125 61 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSI 135 (385)
Q Consensus 61 ~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~ 135 (385)
.+|||||++.+.......+..+|++|+|+|+++.. ..+. ...+..+. .....|+++++||+|+..... ..++.
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt-~e~l~~~~-~~~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLMALQ-IIGQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHHHHH-HHTCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhH-HHHHHHHH-HcCCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 99999999887776666778899999999999653 1111 12222222 224568999999999876432 22333
Q ss_pred HHHHh---cCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 136 VFHRK---KNLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 136 ~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
.+... ...+++++||+++.|+++++..|...+.
T Consensus 164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 34332 3568999999999999999999988653
No 275
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.65 E-value=1.2e-16 Score=134.38 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=91.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCC----------ccccCccccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG----------QEKFGGLRDG 292 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~ 292 (385)
..+||+++|.+|||||||+++++.+. ...+.++.+++........+. .+.+||||| ++.+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 45899999999999999999998776 456677777776665554443 367999999 6667777788
Q ss_pred ccccC---cEEEEEEeCCChhhhhh-----------------------------------------------hheecccc
Q psy125 293 YYIQG---QCAIIMFDVTSRITYKN-----------------------------------------------YYDISAKS 322 (385)
Q Consensus 293 ~~~~~---~~~ilv~d~~~~~s~~~-----------------------------------------------~~e~Sak~ 322 (385)
|++++ +++++|+|++++.+... |++|||++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVT 177 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTT
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCC
Confidence 88766 99999999988654433 79999999
Q ss_pred CCCchHHHHHHHHHHhc
Q psy125 323 NYNFEKPFLWLARKLIG 339 (385)
Q Consensus 323 ~~~v~~~f~~l~~~i~~ 339 (385)
|.||+++|.+|++.+.+
T Consensus 178 ~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 178 GEGISELLDLISTLLKE 194 (195)
T ss_dssp CTTHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhhc
Confidence 99999999999998754
No 276
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.65 E-value=3.7e-16 Score=146.60 Aligned_cols=146 Identities=16% Similarity=0.086 Sum_probs=104.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC--------CCCCc-------ccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTG--------EFEKK-------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 71 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~--------~~~~~-------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~ 71 (385)
.+.++|+++|++|+|||||+++|++. .+... .....|.|.+............+.+|||||++++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 46789999999999999999998763 11110 0124566766666666666788999999999988
Q ss_pred ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhh-----hHHHHHHHHhcC---
Q psy125 72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV-----KAKSIVFHRKKN--- 142 (385)
Q Consensus 72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~--- 142 (385)
......++.++|++|+|+|+++....+. ..++..+.. .+.| +++++||+|+..... ..+...+....+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 165 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence 8778888899999999999988654332 334433332 4677 889999999874211 123334444433
Q ss_pred --CeEEEEcCCCCCC
Q psy125 143 --LQYYDISAKSNYN 155 (385)
Q Consensus 143 --~~~~~~Sa~~~~g 155 (385)
.+++++||+++.|
T Consensus 166 ~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 166 DEVPVIRGSALLALE 180 (405)
T ss_dssp TTSCEEECCHHHHHH
T ss_pred cCCCEEEccHHHhhh
Confidence 5899999999876
No 277
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.9e-16 Score=151.51 Aligned_cols=153 Identities=22% Similarity=0.201 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------------------------cccceeeeEEEEEEeCCee
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY-----------------------------VATLGVEVHPLVFHTNRGA 57 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~-----------------------------~~~~g~t~~~~~~~~~~~~ 57 (385)
.+.++|+++|++|+|||||+|+|+........ ....|+|++..........
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45789999999999999999998865221110 0125677766666666677
Q ss_pred EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh---hh--hcHHHHHHHHHHhcCCCCEEEEEeCCCCcch--hh
Q psy125 58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI---TY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKDR--KV 130 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~---~~--~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--~~ 130 (385)
..+.+|||||++.+......++.++|++|+|+|+++.. ++ .........+.......++++|+||+|+... ..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 89999999999988888888899999999999998742 11 1111222222222233459999999998752 11
Q ss_pred ----hHHHHHHHHhc-----CCeEEEEcCCCCCChHHH
Q psy125 131 ----KAKSIVFHRKK-----NLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 131 ----~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l 159 (385)
..+...+.... ..+++++||++|.|+.++
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 22222333322 358999999999999764
No 278
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.64 E-value=1.7e-16 Score=140.15 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=90.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC------cccccccc--
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG------GLRDGYYI-- 295 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~-- 295 (385)
.++|+++|.+|||||||++++.+..+. ....+|+++..+...+.. ...+.+|||||+..+. .+...|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~--v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR--VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC--CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 479999999999999999998865432 233456777666666665 6678999999999886 34566776
Q ss_pred cCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHHH
Q psy125 296 QGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 296 ~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
++|++|+|||+++..++.. +++|||++|.||+++|.+|+
T Consensus 80 ~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~ 159 (272)
T 3b1v_A 80 RADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAA 159 (272)
T ss_dssp CCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHH
Confidence 6999999999999876544 79999999999999999999
Q ss_pred HHHh
Q psy125 335 RKLI 338 (385)
Q Consensus 335 ~~i~ 338 (385)
+.+.
T Consensus 160 ~~~~ 163 (272)
T 3b1v_A 160 HTTT 163 (272)
T ss_dssp HSCT
T ss_pred HHHh
Confidence 8653
No 279
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.64 E-value=1.7e-15 Score=139.65 Aligned_cols=176 Identities=16% Similarity=0.139 Sum_probs=121.7
Q ss_pred ccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----h-HHHHHHHHhcC
Q psy125 68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----K-AKSIVFHRKKN 142 (385)
Q Consensus 68 ~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~-~~~~~~~~~~~ 142 (385)
.+.+++....+.+.++++++|+|++++. ..|...+.+...+.|+++|+||+|+..... . .....++...+
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g 130 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG 130 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence 4567777788888999999999999864 245445555556899999999999865432 1 11222345555
Q ss_pred C---eEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhc
Q psy125 143 L---QYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAE 219 (385)
Q Consensus 143 ~---~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 219 (385)
. .++.+||+++.|+++++..|.+...
T Consensus 131 ~~~~~v~~iSA~~g~gi~~L~~~l~~~~~--------------------------------------------------- 159 (368)
T 3h2y_A 131 LKPEDVFLISAAKGQGIAELADAIEYYRG--------------------------------------------------- 159 (368)
T ss_dssp CCCSEEEECCTTTCTTHHHHHHHHHHHHT---------------------------------------------------
T ss_pred CCcccEEEEeCCCCcCHHHHHhhhhhhcc---------------------------------------------------
Confidence 5 7899999999999999888766431
Q ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCc-----cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc--
Q psy125 220 MDMPSFKCVLVGDGGTGKTTFVKRHLTGE-----FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG-- 292 (385)
Q Consensus 220 ~~~~~~~i~~~G~~~vgks~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-- 292 (385)
..+++++|.+||||||++|+++... .....++.+|+|.....+.+... +.++||||......+...
T Consensus 160 ----~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~ 232 (368)
T 3h2y_A 160 ----GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVG 232 (368)
T ss_dssp ----TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSC
T ss_pred ----cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhh
Confidence 1369999999999999999977542 12335667788887777776654 689999998554332221
Q ss_pred ------c--cccCcEEEEEEeC
Q psy125 293 ------Y--YIQGQCAIIMFDV 306 (385)
Q Consensus 293 ------~--~~~~~~~ilv~d~ 306 (385)
+ ....+..+++.+.
T Consensus 233 ~~~l~~~~~~~~i~~~~~~l~~ 254 (368)
T 3h2y_A 233 KQSLKLITPTKEIKPMVFQLNE 254 (368)
T ss_dssp HHHHHHHSCSSCCCCEEEEECT
T ss_pred HHHHHHhccccccCceEEEEcC
Confidence 1 2466777777766
No 280
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.64 E-value=2.9e-16 Score=148.50 Aligned_cols=152 Identities=19% Similarity=0.247 Sum_probs=100.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC--CCCCcc---------------------------cccceeeeEEEEEEeCCee
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------VATLGVEVHPLVFHTNRGA 57 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~--~~~~~~---------------------------~~~~g~t~~~~~~~~~~~~ 57 (385)
.+.++|+++|+.|+|||||+++|+.. .+.... ....|.|.+..........
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999998764 221110 0134566666555666677
Q ss_pred EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHH------HHHHHHhcCCCCEEEEEeCCCCcch---
Q psy125 58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNW------HRDLVRVCENIPIVLCGNKVDIKDR--- 128 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~------~~~l~~~~~~~~~ilv~nK~Dl~~~--- 128 (385)
..+.+|||||+.++...+..++.++|++|+|+|+++ .+|+....| ...+.......++++++||+|+...
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 889999999999988888888999999999999998 444432211 1111122233468999999998751
Q ss_pred -----hhhHHHHHHHHhcC-----CeEEEEcCCCCCChHHH
Q psy125 129 -----KVKAKSIVFHRKKN-----LQYYDISAKSNYNFEKP 159 (385)
Q Consensus 129 -----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 159 (385)
....+...+....+ .+++++||+++.|+.++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 11233444555444 57999999999998644
No 281
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.64 E-value=4.8e-16 Score=140.25 Aligned_cols=120 Identities=17% Similarity=0.129 Sum_probs=95.3
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCe-eEEEEEeeCCCccccC----------ccc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFG----------GLR 290 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~----------~~~ 290 (385)
.+...|+++|.+|||||||++++++..+. ...+.+++|+.......... ...+.+|||||+..+. ...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 35678999999999999999999876654 34555666665554444434 6778999999997655 455
Q ss_pred ccccccCcEEEEEEeCCChhhhhh-----------------------------------------------hheeccccC
Q psy125 291 DGYYIQGQCAIIMFDVTSRITYKN-----------------------------------------------YYDISAKSN 323 (385)
Q Consensus 291 ~~~~~~~~~~ilv~d~~~~~s~~~-----------------------------------------------~~e~Sak~~ 323 (385)
..+++++|++|+|+|++++.++++ +++|||++|
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g 166 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKG 166 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTT
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCC
Confidence 568899999999999999876554 789999999
Q ss_pred CCchHHHHHHHHHHhcCCC
Q psy125 324 YNFEKPFLWLARKLIGDPN 342 (385)
Q Consensus 324 ~~v~~~f~~l~~~i~~~~~ 342 (385)
.||+++|.+|++.+...+.
T Consensus 167 ~gv~~L~~~l~~~l~~~~~ 185 (308)
T 3iev_A 167 ANLDELVKTILKYLPEGEP 185 (308)
T ss_dssp BSHHHHHHHHHHHSCBCCC
T ss_pred CCHHHHHHHHHHhCccCCC
Confidence 9999999999999866544
No 282
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=1.6e-15 Score=129.24 Aligned_cols=156 Identities=13% Similarity=0.032 Sum_probs=95.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc----------ccchhh
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF----------GGLRDG 77 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~----------~~~~~~ 77 (385)
+..+|+|+|++|||||||+|+|++..+...+.++.|.++......... .+.+|||||.... ......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 457999999999999999999777665566677888777654443332 4678999997421 111222
Q ss_pred hh---ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHHhc--CCeEEEE
Q psy125 78 YY---IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHRKK--NLQYYDI 148 (385)
Q Consensus 78 ~~---~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~~--~~~~~~~ 148 (385)
++ ..++++++|+|+....+.... .....+. ..+.|+++++||+|+..... ......+.... ...++++
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~--~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAV--DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHH--HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHhhhcccEEEEEEECCCCCchhHH-HHHHHHH--HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 33 467899999999876543211 1111121 25789999999999865322 12233333333 2467899
Q ss_pred cCCCCCChHHHHHHHHHHHhc
Q psy125 149 SAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
|++++.|+++++..|.+.+..
T Consensus 179 Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC-
T ss_pred eecCCCCHHHHHHHHHHHHhh
Confidence 999999999999999887644
No 283
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.63 E-value=4.2e-15 Score=133.43 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=94.0
Q ss_pred ccccccchhhhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHHhcCC
Q psy125 68 QEKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNL 143 (385)
Q Consensus 68 ~~~~~~~~~~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~ 143 (385)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... ..+...++...+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~ 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence 4566667778899999999999999885 77777888876654 6899999999999976542 3445556666788
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCC
Q psy125 144 QYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMP 223 (385)
Q Consensus 144 ~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (385)
+++++||+++.|+++++..+..
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l~G---------------------------------------------------------- 165 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYLEG---------------------------------------------------------- 165 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHTTT----------------------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHhhccC----------------------------------------------------------
Confidence 9999999999999987764321
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHL 245 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~ 245 (385)
..++++|++|+|||||++.+.
T Consensus 166 -~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 -FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp -CEEEEECSTTSSHHHHHHHHH
T ss_pred -cEEEEECCCCCCHHHHHHHHH
Confidence 247899999999999999976
No 284
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=144.44 Aligned_cols=157 Identities=17% Similarity=0.279 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCC-ccc--------ccceeeeEEEEEEeCCeeEEEEEEeCCCc-------cccc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYV--------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQ-------EKFG 72 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~--------~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~-------~~~~ 72 (385)
.++|+|+|++|+|||||+|+|++..... .+. ++.+..............+.+.+|||||. +.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 5899999999999999999976643322 211 23333222222233344568999999998 5555
Q ss_pred cchh-------hhhccCcEE-----------EEEEeCCC-hhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhhh-
Q psy125 73 GLRD-------GYYIQGQCA-----------IIMFDVTS-RITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVK- 131 (385)
Q Consensus 73 ~~~~-------~~~~~~d~i-----------llV~d~~~-~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~- 131 (385)
.+.. .++.+++++ ++||++++ ..++..+. .++..+ ..+.|+++|+||+|+......
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHH
Confidence 5554 455443322 35555554 34455444 233332 367899999999998765432
Q ss_pred ---HHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 132 ---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 132 ---~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
.....+....+.+++++||+++.+ ++.+..+.+.+..
T Consensus 194 ~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 194 RLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 234445555677899999999988 7777777776654
No 285
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.63 E-value=1.6e-16 Score=154.47 Aligned_cols=121 Identities=21% Similarity=0.327 Sum_probs=89.5
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEE------EEe--CCeeEEEEEeeCCCccccCcccccc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV------FHT--NRGAIRFNVWDTAGQEKFGGLRDGY 293 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~ 293 (385)
...+||+++|.+|||||||++++..+.|...+.+|+|.+..++. +.+ ++..+.+.+|||||++.+..+...+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 45799999999999999999999999998889999988877653 222 2346789999999999999999999
Q ss_pred cccCcEEEEEEeCCChhhhhh--------------------------------------------hheeccccCCCchHH
Q psy125 294 YIQGQCAIIMFDVTSRITYKN--------------------------------------------YYDISAKSNYNFEKP 329 (385)
Q Consensus 294 ~~~~~~~ilv~d~~~~~s~~~--------------------------------------------~~e~Sak~~~~v~~~ 329 (385)
++.++++|+|||+++...... |++|||++|.||+++
T Consensus 119 l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL 198 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESI 198 (535)
T ss_dssp HHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTH
T ss_pred ccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHH
Confidence 999999999999987755444 899999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy125 330 FLWLARKLIGDPN 342 (385)
Q Consensus 330 f~~l~~~i~~~~~ 342 (385)
|.+|++.+.....
T Consensus 199 ~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 199 AKSLKSAVLHPDS 211 (535)
T ss_dssp HHHHHHHHTCTTS
T ss_pred HHHHHHHHhcccc
Confidence 9999999876543
No 286
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.63 E-value=1.9e-15 Score=146.94 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=104.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCC----cccccceeeeEEEEE------------EeCCeeEEEEEEeCCCcc
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEK----KYVATLGVEVHPLVF------------HTNRGAIRFNVWDTAGQE 69 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~----~~~~~~g~t~~~~~~------------~~~~~~~~~~i~Dt~g~~ 69 (385)
.++.++|+++|+.|+|||||+++|++..... ...++.|.+...... ..+.....+++|||||+.
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 3467899999999999999999987643322 112233322211100 000112258999999999
Q ss_pred ccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh------------------h
Q psy125 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------------K 131 (385)
Q Consensus 70 ~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~------------------~ 131 (385)
.+...+..++..+|++|+|+|+++....+....|. .+.. .+.|+++++||+|+..... .
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~ 158 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence 99888888889999999999999832222222221 2222 5789999999999853210 0
Q ss_pred H-------HHHHHHHhc---------------CCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 132 A-------KSIVFHRKK---------------NLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 132 ~-------~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
. +........ ..+++++||+++.|+++++.+|...+.
T Consensus 159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 111111111 127899999999999999999988764
No 287
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.62 E-value=1.1e-15 Score=133.99 Aligned_cols=110 Identities=16% Similarity=0.107 Sum_probs=86.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc----------cccccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----------LRDGYY 294 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~~~ 294 (385)
.+|+++|.+|||||||++++.+..+.....++...+.....+...+ ..+.||||||+..+.. +...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 3799999999999999999887655433333333334444444444 4789999999988875 445567
Q ss_pred --ccCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHH
Q psy125 295 --IQGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFL 331 (385)
Q Consensus 295 --~~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~ 331 (385)
+++|++|+|+|+++..++.. +++|||++|.||+++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHH
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 89999999999999887766 89999999999999999
Q ss_pred HHHHH
Q psy125 332 WLARK 336 (385)
Q Consensus 332 ~l~~~ 336 (385)
+|++.
T Consensus 160 ~i~~~ 164 (256)
T 3iby_A 160 SLLHC 164 (256)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 99886
No 288
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.62 E-value=5.4e-16 Score=147.19 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=72.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc--------cccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR--------DGYY 294 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~ 294 (385)
..++|+++|.+|||||||+|+++.... ......+|++.......+...++.+.||||||++.+...+ ..++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 358999999999999999999876542 2334455566555433333334678999999998766443 3478
Q ss_pred ccCcEEEEEEeCCChhhhh----h---------------------------------------hheeccccCCCchHHHH
Q psy125 295 IQGQCAIIMFDVTSRITYK----N---------------------------------------YYDISAKSNYNFEKPFL 331 (385)
Q Consensus 295 ~~~~~~ilv~d~~~~~s~~----~---------------------------------------~~e~Sak~~~~v~~~f~ 331 (385)
+++|++|+|||++++.+++ . +++|||++|.||+++|.
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHH
Confidence 9999999999999998883 1 48899999999999999
Q ss_pred HHHHHHh
Q psy125 332 WLARKLI 338 (385)
Q Consensus 332 ~l~~~i~ 338 (385)
+|.+.+.
T Consensus 391 ~i~~~~~ 397 (476)
T 3gee_A 391 HMGDLVK 397 (476)
T ss_dssp HHTHHHH
T ss_pred HHHHHHh
Confidence 9999886
No 289
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.61 E-value=2.3e-16 Score=135.81 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=91.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCc----------cccCcccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQ----------EKFGGLRD 291 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~----------~~~~~~~~ 291 (385)
...+|+++|.+|||||||+++++...+......++|++.......+. .....+.||||||. +.+..+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 46899999999999999999998776555666677777766655555 44567899999994 34455556
Q ss_pred ccccc---CcEEEEEEeCCChhhhhh-----------------------------------------------------h
Q psy125 292 GYYIQ---GQCAIIMFDVTSRITYKN-----------------------------------------------------Y 315 (385)
Q Consensus 292 ~~~~~---~~~~ilv~d~~~~~s~~~-----------------------------------------------------~ 315 (385)
.|++. +|++|+|+|++++.+..+ |
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 187 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTV 187 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEE
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeE
Confidence 67665 888999999998644333 4
Q ss_pred heeccccCCCchHHHHHHHHHHhcC
Q psy125 316 YDISAKSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 316 ~e~Sak~~~~v~~~f~~l~~~i~~~ 340 (385)
++|||++|.||+++|.+|.+.+...
T Consensus 188 ~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 188 QLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred EEeecCCCcCHHHHHHHHHHhcCcc
Confidence 7899999999999999999988554
No 290
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.61 E-value=6.7e-16 Score=146.67 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=102.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC--CCCCc---------------------------ccccceeeeEEEEEEeCCee
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YVATLGVEVHPLVFHTNRGA 57 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~--~~~~~---------------------------~~~~~g~t~~~~~~~~~~~~ 57 (385)
++.++|+++|++|+|||||+++|+.. .+... .....|+|.+..........
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46799999999999999999998763 11110 00124566655555556667
Q ss_pred EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh---hhh---cHHHHHHHHHHhcCCCC-EEEEEeCCCCcc--h
Q psy125 58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI---TYK---NVPNWHRDLVRVCENIP-IVLCGNKVDIKD--R 128 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~---~~~---~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~--~ 128 (385)
..+.+|||||+..+...+..++.++|++|+|+|+++.. +|+ ........+ .. .+.| +++++||+|+.. .
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~-~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT-LGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH-TTCCEEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH-cCCCeEEEEEEccccccCCH
Confidence 88999999999988888888889999999999999763 231 111222222 22 3555 899999999863 2
Q ss_pred h----hhHHHHHHHHhcC-----CeEEEEcCCCCCChHH
Q psy125 129 K----VKAKSIVFHRKKN-----LQYYDISAKSNYNFEK 158 (385)
Q Consensus 129 ~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 158 (385)
. ...+...+....+ .+++++||+++.|+.+
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 1 1223333444333 5899999999999864
No 291
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.61 E-value=9.2e-17 Score=134.55 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=89.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCC-----------ccccCcccccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG-----------QEKFGGLRDGY 293 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G-----------~~~~~~~~~~~ 293 (385)
+||+++|.+|||||||+++++.+.+...+.++ +++....+... .+.+||||| ++.+..++..|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPG--VTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTT--CTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCC--ccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999988877666554 34444444443 478999999 67777778888
Q ss_pred ccc-CcEEEEEEeCCChhhhhh-------------------------------------------------------h--
Q psy125 294 YIQ-GQCAIIMFDVTSRITYKN-------------------------------------------------------Y-- 315 (385)
Q Consensus 294 ~~~-~~~~ilv~d~~~~~s~~~-------------------------------------------------------~-- 315 (385)
+++ ++++++||+++|+.+|++ |
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 155 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE 155 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhc
Confidence 887 888888888888877621 2
Q ss_pred -----heeccccCCCchHHHHHHHHHHhcCC
Q psy125 316 -----YDISAKSNYNFEKPFLWLARKLIGDP 341 (385)
Q Consensus 316 -----~e~Sak~~~~v~~~f~~l~~~i~~~~ 341 (385)
++|||++|.||+++|.+|++.+.+..
T Consensus 156 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 156 IDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 89999999999999999999987653
No 292
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.61 E-value=4.2e-16 Score=148.40 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=87.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------cc------cccceeeeEEEEEEeCCee
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLT--GEFEK---------------------KY------VATLGVEVHPLVFHTNRGA 57 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~--~~~~~---------------------~~------~~~~g~t~~~~~~~~~~~~ 57 (385)
.+.++|+++|+.++|||||+++|+. +.+.. .. ....|.|.+.....+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 3468999999999999999999864 22110 00 0123555554433444456
Q ss_pred EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh---hhhcHHHHHHHHHH-hcCCCC-EEEEEeCCCCcch----
Q psy125 58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI---TYKNVPNWHRDLVR-VCENIP-IVLCGNKVDIKDR---- 128 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~---~~~~~~~~~~~l~~-~~~~~~-~ilv~nK~Dl~~~---- 128 (385)
..+.+|||||++.+...+...+.++|++|+|+|+++.. +|+....+...+.. ...++| +++++||+|+...
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 88999999999999888888889999999999999863 33321112111111 124676 9999999998531
Q ss_pred h----hhHHHHHHHHhc-------CCeEEEEcCCCCCChHHHH
Q psy125 129 K----VKAKSIVFHRKK-------NLQYYDISAKSNYNFEKPF 160 (385)
Q Consensus 129 ~----~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~ 160 (385)
. ...+...+.... ..+++++||+++.|+.+++
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 122334444433 3469999999999987543
No 293
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.61 E-value=7.9e-17 Score=152.92 Aligned_cols=153 Identities=14% Similarity=0.192 Sum_probs=106.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 87 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill 87 (385)
+.++|+++|+.++|||||+++|......... ..|+|.+.........+..+.+|||||++.+...+...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 5679999999999999999998765433221 23344333333344445678999999999998888888999999999
Q ss_pred EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHH--H-HHHhc--CCeEEEEcCCCCCChHHH
Q psy125 88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSI--V-FHRKK--NLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~--~-~~~~~--~~~~~~~Sa~~~~gi~~l 159 (385)
|+|+++....+....+ ..+. ..+.|+++++||+|+..... ..... . +.... ..+++++||+++.|++++
T Consensus 81 VVda~~g~~~qT~e~l-~~~~--~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI-QHAK--AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp EEETTTBSCTTTHHHH-HHHH--HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred EeecccCccHHHHHHH-HHHH--hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 9999886544433333 2222 25789999999999864211 11000 0 00111 258999999999999999
Q ss_pred HHHHHH
Q psy125 160 FLWLAR 165 (385)
Q Consensus 160 ~~~i~~ 165 (385)
+..|..
T Consensus 158 le~I~~ 163 (501)
T 1zo1_I 158 LDAILL 163 (501)
T ss_dssp HHHTTT
T ss_pred hhhhhh
Confidence 988754
No 294
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.61 E-value=2.5e-16 Score=146.29 Aligned_cols=83 Identities=22% Similarity=0.173 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEe-----------------------CC-eeEEEEEEeC
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----------------------NR-GAIRFNVWDT 65 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~-----------------------~~-~~~~~~i~Dt 65 (385)
++|+|+|.+|||||||+|+|++.. ....+.+++|+....... +. ..+.+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 589999999999999999977755 333444555544333211 11 2578999999
Q ss_pred CCcccc----ccchh---hhhccCcEEEEEEeCCCh
Q psy125 66 AGQEKF----GGLRD---GYYIQGQCAIIMFDVTSR 94 (385)
Q Consensus 66 ~g~~~~----~~~~~---~~~~~~d~illV~d~~~~ 94 (385)
||+... ..+.. .+++++|++++|+|+++.
T Consensus 79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 998532 22222 356899999999999874
No 295
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.61 E-value=3.7e-15 Score=137.48 Aligned_cols=177 Identities=17% Similarity=0.144 Sum_probs=123.7
Q ss_pred ccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-----hHHHHHHHHhcC
Q psy125 68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-----KAKSIVFHRKKN 142 (385)
Q Consensus 68 ~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~ 142 (385)
++.+++....++..++++++|+|++++.+ .|...+.+...+.|+++|+||+|+..... ......++...+
T Consensus 58 ~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g 132 (369)
T 3ec1_A 58 DDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELG 132 (369)
T ss_dssp -CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcC
Confidence 56777778888899999999999999764 23333333346889999999999865432 111222344455
Q ss_pred C---eEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhc
Q psy125 143 L---QYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAE 219 (385)
Q Consensus 143 ~---~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 219 (385)
. .++.+||+++.|+++++..+.+...
T Consensus 133 ~~~~~v~~iSA~~g~gi~~L~~~I~~~~~--------------------------------------------------- 161 (369)
T 3ec1_A 133 LCPVDVCLVSAAKGIGMAKVMEAINRYRE--------------------------------------------------- 161 (369)
T ss_dssp CCCSEEEECBTTTTBTHHHHHHHHHHHHT---------------------------------------------------
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHhhcc---------------------------------------------------
Confidence 4 7899999999999998888766531
Q ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcC----ccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc---
Q psy125 220 MDMPSFKCVLVGDGGTGKTTFVKRHLTG----EFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG--- 292 (385)
Q Consensus 220 ~~~~~~~i~~~G~~~vgks~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--- 292 (385)
..+++++|.+||||||++|.++.. .-.......+|+|.....+.++.. +.++||||......+...
T Consensus 162 ----~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~ 234 (369)
T 3ec1_A 162 ----GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDA 234 (369)
T ss_dssp ----TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCT
T ss_pred ----cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhH
Confidence 136999999999999999997753 112334556677877777766644 689999997544322221
Q ss_pred ----cc---ccCcEEEEEEeCC
Q psy125 293 ----YY---IQGQCAIIMFDVT 307 (385)
Q Consensus 293 ----~~---~~~~~~ilv~d~~ 307 (385)
++ ...++++++.+..
T Consensus 235 ~~l~~~~~~~~i~~~~~~l~~~ 256 (369)
T 3ec1_A 235 RDLKIITPKREIHPRVYQLNEG 256 (369)
T ss_dssp TTHHHHSCSSCCCCEEEEECTT
T ss_pred HHHHHHhcccccCceEEEEcCC
Confidence 12 5778888888873
No 296
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.60 E-value=2.4e-16 Score=153.80 Aligned_cols=150 Identities=20% Similarity=0.203 Sum_probs=80.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCC--C---------------------------CcccccceeeeEEEEEEeCCee
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYVATLGVEVHPLVFHTNRGA 57 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~--~---------------------------~~~~~~~g~t~~~~~~~~~~~~ 57 (385)
.+.++|+++|++|+|||||+++|+.... . .......|+|++.....+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 4568999999999999999999864210 0 0001245777777777777777
Q ss_pred EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh---hh--hcHHHHHHHHHHhcCCCC-EEEEEeCCCCcc--hh
Q psy125 58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI---TY--KNVPNWHRDLVRVCENIP-IVLCGNKVDIKD--RK 129 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~---~~--~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~--~~ 129 (385)
..+.+|||||+..+...+...+.++|++|+|+|+++.. ++ .........+... .++| +++|+||+|+.. ..
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCCCEEEEEECGGGGTTCHH
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCCeEEEEEeccccccccHH
Confidence 89999999999998888888889999999999998643 22 1111222222222 3555 899999999864 21
Q ss_pred h----hHHHHHHH-HhcCC-----eEEEEcCCCCCChH
Q psy125 130 V----KAKSIVFH-RKKNL-----QYYDISAKSNYNFE 157 (385)
Q Consensus 130 ~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~gi~ 157 (385)
. ..++..+. ...+. +++++||++|.|+.
T Consensus 334 ~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 334 RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 1 22233333 22333 68999999999997
No 297
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.60 E-value=3.9e-15 Score=135.84 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=91.0
Q ss_pred eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCCh----------hhhhcHHHHHHHHHH--hcCCCCEEEEEeCC
Q psy125 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR----------ITYKNVPNWHRDLVR--VCENIPIVLCGNKV 123 (385)
Q Consensus 56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~----------~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~ 123 (385)
+.+.+.+|||+|++.++..+..++.+++++|+|+|+++. .++.+...|+..+.. ...+.|+++++||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 468899999999999999999999999999999999994 456666677777665 23679999999999
Q ss_pred CCcchh-----------------hhHHHHHHHH-----------hcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 124 DIKDRK-----------------VKAKSIVFHR-----------KKNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 124 Dl~~~~-----------------~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
|+...+ ...+...+.. .....++++||+++.|+.+.|.++++.+..
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 985432 1233444443 245578999999999999999999988754
No 298
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.60 E-value=6.4e-16 Score=137.07 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=87.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc----------ccc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR----------DGY 293 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------~~~ 293 (385)
.++|+++|.+|||||||++++++..+... ..+|++.......+......+.+|||||+..+.... ..|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~--~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVG--NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEE--ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999987765333 333444444433333334467899999998877432 223
Q ss_pred c--ccCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHH
Q psy125 294 Y--IQGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 294 ~--~~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f 330 (385)
+ +.+|++|+|+|+++..++.. +++|||++|.||+++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHH
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 3 79999999999999877655 7999999999999999
Q ss_pred HHHHHHHhcC
Q psy125 331 LWLARKLIGD 340 (385)
Q Consensus 331 ~~l~~~i~~~ 340 (385)
.+|++.+...
T Consensus 161 ~~i~~~~~~~ 170 (274)
T 3i8s_A 161 LAIDRYKANE 170 (274)
T ss_dssp HHHHTCCCCC
T ss_pred HHHHHHHhcC
Confidence 9999877554
No 299
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.60 E-value=3.8e-15 Score=151.27 Aligned_cols=158 Identities=15% Similarity=0.052 Sum_probs=107.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------cccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGE-------FEK-------KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~-------~~~-------~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~ 72 (385)
.+.++|+++|+.++|||||+++|++.. +.. ....+.|+|.+............+.+|||||++++.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 567999999999999999999987631 000 112356666665555556667889999999999888
Q ss_pred cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhh-----hHHHHHHHHhcC----
Q psy125 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV-----KAKSIVFHRKKN---- 142 (385)
Q Consensus 73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~---- 142 (385)
..+...+.++|++|+|+|+++....+. ..++..+.. .++| +++++||+|+..... ..+...+....+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~ 450 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGD 450 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccc
Confidence 777788899999999999998754443 334333332 3677 789999999974221 223444444443
Q ss_pred -CeEEEEcCCCC--------CChHHHHHHHHHHH
Q psy125 143 -LQYYDISAKSN--------YNFEKPFLWLARKL 167 (385)
Q Consensus 143 -~~~~~~Sa~~~--------~gi~~l~~~i~~~l 167 (385)
.+++++||+++ .|+.+++..|...+
T Consensus 451 ~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 451 DTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 58999999998 45777777777654
No 300
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.59 E-value=7.9e-15 Score=145.30 Aligned_cols=123 Identities=20% Similarity=0.156 Sum_probs=85.1
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----c---------cc---cceeeeEEEEEEeCCeeEEEEEEe
Q psy125 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----Y---------VA---TLGVEVHPLVFHTNRGAIRFNVWD 64 (385)
Q Consensus 1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~---------~~---~~g~t~~~~~~~~~~~~~~~~i~D 64 (385)
|.+..-.+..+|+|+|++|+|||||+++|++...... + .+ ..++++........+..+.+++||
T Consensus 1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 3333334567999999999999999999884322100 0 00 224455555555555678999999
Q ss_pred CCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125 65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 126 (385)
Q Consensus 65 t~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~ 126 (385)
|||+.++......++..+|++++|+|+.+....+.. .++..+.. .+.|+++++||+|+.
T Consensus 81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred CCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH--ccCCEEEEecCCchh
Confidence 999998888888889999999999998876544332 33333332 478999999999986
No 301
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.58 E-value=1.9e-14 Score=133.89 Aligned_cols=158 Identities=16% Similarity=0.114 Sum_probs=106.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCcccc----ccchhh---hhccC
Q psy125 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKF----GGLRDG---YYIQG 82 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~----~~~~~~---~~~~~ 82 (385)
.|+|+|++|||||||+++|.+... ........|.......+... ...+.++|+||.... ..+... .+..+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~--~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC--EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc--cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 589999999999999999766432 11122222333222222222 367889999997431 222222 23579
Q ss_pred cEEEEEEeCCChhhhhcHHHHHHHHHHh---cCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125 83 QCAIIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 159 (385)
Q Consensus 83 d~illV~d~~~~~~~~~~~~~~~~l~~~---~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (385)
+.+++|+|++ ...+..+..+..++... ....|.++++||+|+........+.......+..++.+||+++.|++++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence 9999999997 44455555555554432 2368999999999987653333444455555678999999999999999
Q ss_pred HHHHHHHHhcCC
Q psy125 160 FLWLARKLIGDP 171 (385)
Q Consensus 160 ~~~i~~~l~~~~ 171 (385)
+..|.+.+...+
T Consensus 316 ~~~i~~~l~~~~ 327 (416)
T 1udx_A 316 KEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHhcc
Confidence 999999987653
No 302
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.58 E-value=1.1e-15 Score=137.13 Aligned_cols=118 Identities=16% Similarity=0.030 Sum_probs=88.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcccc--------Cccccccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF--------GGLRDGYY 294 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~ 294 (385)
...+|+++|.+|||||||+|++++..+.. .++.+++|..............+.+|||||+... ......++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i-vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP-ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceee-ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 45789999999999999999998776532 2333445544333333334677899999998763 34455688
Q ss_pred ccCcEEEEEEeCCChhhhhh--------------------------------------------hheeccccCCCchHHH
Q psy125 295 IQGQCAIIMFDVTSRITYKN--------------------------------------------YYDISAKSNYNFEKPF 330 (385)
Q Consensus 295 ~~~~~~ilv~d~~~~~s~~~--------------------------------------------~~e~Sak~~~~v~~~f 330 (385)
+++|++|+|||++++.+..+ +++|||++|.||+++|
T Consensus 85 ~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~ 164 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELK 164 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHH
T ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHH
Confidence 99999999999998654333 3679999999999999
Q ss_pred HHHHHHHhcCC
Q psy125 331 LWLARKLIGDP 341 (385)
Q Consensus 331 ~~l~~~i~~~~ 341 (385)
.+|.+.+...+
T Consensus 165 ~~l~~~l~~~~ 175 (301)
T 1wf3_A 165 ADLLALMPEGP 175 (301)
T ss_dssp HHHHTTCCBCC
T ss_pred HHHHHhcccCC
Confidence 99998876544
No 303
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.58 E-value=5.4e-15 Score=130.39 Aligned_cols=118 Identities=14% Similarity=0.184 Sum_probs=84.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc------
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI------ 80 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~------ 80 (385)
++.++|+++|.+|+|||||+|+|++.... ...+..+.|...........+..+.+|||||+..+......++.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVV-RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCS-CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 46799999999999999999998876542 23445555665555555556679999999999876554433332
Q ss_pred ---cCcEEEEEEeCCChhhhhcH-HHHHHHHHHhcC---CCCEEEEEeCCCCc
Q psy125 81 ---QGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCE---NIPIVLCGNKVDIK 126 (385)
Q Consensus 81 ---~~d~illV~d~~~~~~~~~~-~~~~~~l~~~~~---~~~~ilv~nK~Dl~ 126 (385)
++|++++|++++... +... ..|+..+..... ..|+++|+||+|+.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999997754 4332 245555554322 24899999999985
No 304
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.58 E-value=7.1e-15 Score=134.07 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=87.4
Q ss_pred eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCC----------ChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCC
Q psy125 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT----------SRITYKNVPNWHRDLVRV--CENIPIVLCGNKV 123 (385)
Q Consensus 56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~----------~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~ 123 (385)
+.+.+.+|||+|++.++.++..++++++++|+|||++ +..++.+...|+..+... ..+.|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 677787777787777652 3689999999999
Q ss_pred CCcchhh-----------------------hHHHHHHHHh----------------cCCeEEEEcCCCCCChHHHHHHHH
Q psy125 124 DIKDRKV-----------------------KAKSIVFHRK----------------KNLQYYDISAKSNYNFEKPFLWLA 164 (385)
Q Consensus 124 Dl~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~i~ 164 (385)
|+..++. ..+...+... ....++++||+++.|+++.|..++
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854321 1223333221 123468999999999999999998
Q ss_pred HHHhc
Q psy125 165 RKLIG 169 (385)
Q Consensus 165 ~~l~~ 169 (385)
+.+..
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 305
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.58 E-value=1.4e-15 Score=133.41 Aligned_cols=152 Identities=18% Similarity=0.115 Sum_probs=100.3
Q ss_pred CCcc-ccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCe
Q psy125 66 AGQE-KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ 144 (385)
Q Consensus 66 ~g~~-~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 144 (385)
||+. .........+.++|+++.|+|++++.+..+.. +. + . ++|.++|+||+|+.+......+..++...+.+
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~ 77 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S-RKETIILLNKVDIADEKTTKKWVEFFKKQGKR 77 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCe
Confidence 5543 33345567789999999999999987765311 11 1 1 78999999999998765555555666666777
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCe
Q psy125 145 YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPS 224 (385)
Q Consensus 145 ~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (385)
+ .+|+.++.|+++++..+...+
T Consensus 78 v-~iSa~~~~gi~~L~~~l~~~~--------------------------------------------------------- 99 (262)
T 3cnl_A 78 V-ITTHKGEPRKVLLKKLSFDRL--------------------------------------------------------- 99 (262)
T ss_dssp E-EECCTTSCHHHHHHHHCCCTT---------------------------------------------------------
T ss_pred E-EEECCCCcCHHHHHHHHHHhh---------------------------------------------------------
Confidence 8 999999999876654321110
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 286 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 286 (385)
++++++|.+||||||++|++..... ..+.+++|+|.....+.++. .+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFSLEN---GVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc-cccCCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence 5899999999999999999775443 45667788887666555543 3689999997643
No 306
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.57 E-value=1.2e-14 Score=144.43 Aligned_cols=124 Identities=21% Similarity=0.243 Sum_probs=86.1
Q ss_pred CCCCCC---CCceEEEEEcCCCCcHHHHHHHHhcC--CCCC--c------cc------ccceeeeEEEEEEeCCeeEEEE
Q psy125 1 MAAEMD---MPSFKCVLVGDGGTGKTTFVKRHLTG--EFEK--K------YV------ATLGVEVHPLVFHTNRGAIRFN 61 (385)
Q Consensus 1 m~~~~~---~~~~~i~lvG~~g~GKSTLin~ll~~--~~~~--~------~~------~~~g~t~~~~~~~~~~~~~~~~ 61 (385)
|+..+. .+..+|+|+|+.|+|||||+++|+.. .... . .. ...+.|.........+..+.++
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~ 80 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRIN 80 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEE
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEE
Confidence 555554 34689999999999999999998732 1100 0 00 0234444444444445578899
Q ss_pred EEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125 62 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 127 (385)
Q Consensus 62 i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~ 127 (385)
+|||||+.++......++..+|++|+|+|+++....+....|.. +.. .++|+++++||+|+..
T Consensus 81 liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 81 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK--YKVPRIAFANKMDKTG 143 (691)
T ss_dssp EECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred EEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence 99999999888888888999999999999998777665544543 222 4889999999999864
No 307
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.57 E-value=9.5e-15 Score=131.25 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=89.1
Q ss_pred CCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCC----------ChhhhhcHHHHHHHHHH--hcCCCCEEEEEe
Q psy125 54 NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT----------SRITYKNVPNWHRDLVR--VCENIPIVLCGN 121 (385)
Q Consensus 54 ~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~----------~~~~~~~~~~~~~~l~~--~~~~~~~ilv~n 121 (385)
..+.+.+.+|||+|++.++..+..++++++++|+|+|++ +..++.....|+..+.. ...+.|+++++|
T Consensus 163 ~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~N 242 (327)
T 3ohm_A 163 DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 242 (327)
T ss_dssp EETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred EeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEE
Confidence 335689999999999999999999999999999999776 44555555566666654 236789999999
Q ss_pred CCCCcchh------------------hhHHHHHHH----------HhcCCeEEEEcCCCCCChHHHHHHHHHHHhcC
Q psy125 122 KVDIKDRK------------------VKAKSIVFH----------RKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 170 (385)
Q Consensus 122 K~Dl~~~~------------------~~~~~~~~~----------~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~ 170 (385)
|+|+..++ ...+...+. ......++++||+++.|++..|..+.+.+...
T Consensus 243 K~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 243 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp CHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 99986543 122333332 22345778999999999999999999988654
No 308
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.57 E-value=2.2e-14 Score=127.19 Aligned_cols=116 Identities=17% Similarity=0.087 Sum_probs=90.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc------cccccc--c
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYY--I 295 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~~--~ 295 (385)
.++|+++|.+|||||||++++.+..+.....++.+.+.....+...+ ..+.+|||||+..+.. +...|+ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 47999999999999999999987766444444444444444444443 4589999999998877 555566 6
Q ss_pred cCcEEEEEEeCCChhhhhh------------------------------------------hheeccccCCCchHHHHHH
Q psy125 296 QGQCAIIMFDVTSRITYKN------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 296 ~~~~~ilv~d~~~~~s~~~------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
++|++|+|+|+++...... +++|||++|.||+++|.++
T Consensus 81 ~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i 160 (271)
T 3k53_A 81 NADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMI 160 (271)
T ss_dssp CCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHH
T ss_pred CCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHH
Confidence 8999999999998654332 7999999999999999999
Q ss_pred HHHHhcCC
Q psy125 334 ARKLIGDP 341 (385)
Q Consensus 334 ~~~i~~~~ 341 (385)
++.+....
T Consensus 161 ~~~~~~~~ 168 (271)
T 3k53_A 161 ALMAEGKV 168 (271)
T ss_dssp HHHHHTCC
T ss_pred HHHHhccc
Confidence 99876543
No 309
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.56 E-value=1.2e-14 Score=128.74 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=84.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhh---------
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG--------- 77 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~--------- 77 (385)
.+.++|+++|.+|+|||||+|+|++..+ ..+.+..+.++.............+.+|||||...+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERV-VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 3579999999999999999999887554 234455666666665555566788999999998765432221
Q ss_pred hhccCcEEEEEEeCCChhhhhcH-HHHHHHHHHhcCC---CCEEEEEeCCCCcch
Q psy125 78 YYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCEN---IPIVLCGNKVDIKDR 128 (385)
Q Consensus 78 ~~~~~d~illV~d~~~~~~~~~~-~~~~~~l~~~~~~---~~~ilv~nK~Dl~~~ 128 (385)
....+|++|+|+|++.. ++... ..|+..+...+.. .|+++|+||+|+...
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 12479999999998764 34332 2566655543232 689999999998643
No 310
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.55 E-value=3.9e-14 Score=136.29 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=80.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCC-C-------------Cc------ccccceeeeEEEEEEeCCeeEEEEEEeCCC
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEF-E-------------KK------YVATLGVEVHPLVFHTNRGAIRFNVWDTAG 67 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~-~-------------~~------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g 67 (385)
+..+|+|+|++|+|||||+++|+.... . .. .....|+|.........+..+.+++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 468999999999999999999886311 1 00 112344554444445555678999999999
Q ss_pred ccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125 68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 127 (385)
Q Consensus 68 ~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~ 127 (385)
+.++......++..+|++|+|+|+++....+. ..+...+. ..++|+++++||+|+..
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~--~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR--LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT--TTTCCEEEEEECTTSCC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH--HcCCCEEEEEcCcCCcc
Confidence 99888878888999999999999988643221 12222221 24789999999999864
No 311
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.55 E-value=2e-14 Score=129.53 Aligned_cols=118 Identities=14% Similarity=0.217 Sum_probs=88.6
Q ss_pred EeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCC----------ChhhhhcHHHHHHHHHH--hcCCCCEEEE
Q psy125 52 HTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT----------SRITYKNVPNWHRDLVR--VCENIPIVLC 119 (385)
Q Consensus 52 ~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~----------~~~~~~~~~~~~~~l~~--~~~~~~~ilv 119 (385)
....+.+.+.+|||+|++.++..+..++++++++|+|+|++ +..++.+...|+..+.. ...+.|++++
T Consensus 155 ~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv 234 (340)
T 4fid_A 155 DFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIF 234 (340)
T ss_dssp EEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEE
T ss_pred EEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEE
Confidence 34446788999999999999999999999999999999998 56667666667766655 2368899999
Q ss_pred EeCCCCcchhh-----------------hHHHHHHHHh---------------------------cCCeEEEEcCCCCCC
Q psy125 120 GNKVDIKDRKV-----------------KAKSIVFHRK---------------------------KNLQYYDISAKSNYN 155 (385)
Q Consensus 120 ~nK~Dl~~~~~-----------------~~~~~~~~~~---------------------------~~~~~~~~Sa~~~~g 155 (385)
+||+|+..++. ..+...+... ....++++||++..+
T Consensus 235 ~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~n 314 (340)
T 4fid_A 235 LNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSN 314 (340)
T ss_dssp EECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHH
T ss_pred EECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHH
Confidence 99999865322 1122222111 124677889999999
Q ss_pred hHHHHHHHHHHHhc
Q psy125 156 FEKPFLWLARKLIG 169 (385)
Q Consensus 156 i~~l~~~i~~~l~~ 169 (385)
++..|..+...++.
T Consensus 315 v~~vF~~v~~~Il~ 328 (340)
T 4fid_A 315 IKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888887654
No 312
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.53 E-value=5.4e-14 Score=139.86 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=86.2
Q ss_pred CCCCCC-CCceEEEEEcCCCCcHHHHHHHHhc--CCCCC--------cccc------cceeeeEEEEEEeCCeeEEEEEE
Q psy125 1 MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLT--GEFEK--------KYVA------TLGVEVHPLVFHTNRGAIRFNVW 63 (385)
Q Consensus 1 m~~~~~-~~~~~i~lvG~~g~GKSTLin~ll~--~~~~~--------~~~~------~~g~t~~~~~~~~~~~~~~~~i~ 63 (385)
|+.... .+..+|+|+|++|+|||||+|+|+. +.... .... ..|+|.........+..+.+++|
T Consensus 1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~li 80 (693)
T 2xex_A 1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNII 80 (693)
T ss_dssp -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEE
T ss_pred CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEE
Confidence 445543 4568999999999999999999884 22110 0011 23444444444445557889999
Q ss_pred eCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125 64 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 127 (385)
Q Consensus 64 Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~ 127 (385)
||||+.++......+++.+|++|+|+|+.+....+....|.. +.. .+.|+++++||+|+..
T Consensus 81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~--~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT--YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence 999999888888888999999999999998766655444433 332 4889999999999864
No 313
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.53 E-value=1.9e-14 Score=129.11 Aligned_cols=161 Identities=17% Similarity=0.247 Sum_probs=83.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC-CCCCcccc------cceeeeEEEEEEe--CCeeEEEEEEeCCCc-------ccc
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTG-EFEKKYVA------TLGVEVHPLVFHT--NRGAIRFNVWDTAGQ-------EKF 71 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~-~~~~~~~~------~~g~t~~~~~~~~--~~~~~~~~i~Dt~g~-------~~~ 71 (385)
-.++|+|+|++|||||||+|+|++. .+.....+ ..+.......+.. ......+++|||+|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3589999999999999999997764 33222210 0111111112222 233578999999998 444
Q ss_pred ccchh-------hhhcc-------------CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-
Q psy125 72 GGLRD-------GYYIQ-------------GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV- 130 (385)
Q Consensus 72 ~~~~~-------~~~~~-------------~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~- 130 (385)
..+.. .++.+ +++++++.+.+. .++..... ..+.......++++|+||.|+.....
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e~ 173 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKER 173 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHHH
Confidence 44333 33322 233343333222 13433321 22222335678999999999875432
Q ss_pred ---hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhcCCC
Q psy125 131 ---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 172 (385)
Q Consensus 131 ---~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~ 172 (385)
..+..+++...+..++++||+++ ++++.+..+++.+.....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 174 ERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 23455667777889999999999 999999999998866433
No 314
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.52 E-value=1.1e-13 Score=137.59 Aligned_cols=109 Identities=12% Similarity=0.101 Sum_probs=74.6
Q ss_pred EEEEEeCCCccc---cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh------
Q psy125 59 RFNVWDTAGQEK---FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK------ 129 (385)
Q Consensus 59 ~~~i~Dt~g~~~---~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~------ 129 (385)
.+.+|||||... .......++.++|++|+|+|++++.+......|...+.. .+.|+++|+||+|+....
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhh
Confidence 588999999754 233456788999999999999887666554444333321 367899999999986442
Q ss_pred --hhH----HHHH-----HHHh--------cCCeEEEEcCC--------------CCCChHHHHHHHHHHHhc
Q psy125 130 --VKA----KSIV-----FHRK--------KNLQYYDISAK--------------SNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 130 --~~~----~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~gi~~l~~~i~~~l~~ 169 (385)
... .... +... ...+++++||+ ++.|+++++..|.+.+..
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 000 1111 1111 12368999999 999999999999887644
No 315
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.51 E-value=3.2e-13 Score=134.43 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=83.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC--CCCC--------ccc------ccceeeeEEEEEEeCCee-------EEEEEE
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTG--EFEK--------KYV------ATLGVEVHPLVFHTNRGA-------IRFNVW 63 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~--~~~~--------~~~------~~~g~t~~~~~~~~~~~~-------~~~~i~ 63 (385)
.+..+|+|+|+.|+|||||+++|+.. .... ... ...|.|.........+.. +.+++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45679999999999999999998742 1111 000 023445444333333333 899999
Q ss_pred eCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125 64 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 127 (385)
Q Consensus 64 Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~ 127 (385)
||||+.++......+++.+|++|+|+|+++....+....|.. +. ..++|+++++||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~--~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN--KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH--HcCCCEEEEEeCCCccc
Confidence 999999888888888999999999999998765544333432 22 25789999999999854
No 316
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.50 E-value=1.2e-13 Score=125.20 Aligned_cols=162 Identities=10% Similarity=0.130 Sum_probs=96.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccceeeeEEEE--------------------------------
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLV-------------------------------- 50 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g~t~~~~~-------------------------------- 50 (385)
...++|+|+|++|||||||+|+|++..+.+. .+..++.......
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4567999999999999999999888665322 1122211111000
Q ss_pred ---------------------EE-eCCeeEEEEEEeCCCccc-------------cccchhhhhccCcEEEEEEeCCChh
Q psy125 51 ---------------------FH-TNRGAIRFNVWDTAGQEK-------------FGGLRDGYYIQGQCAIIMFDVTSRI 95 (385)
Q Consensus 51 ---------------------~~-~~~~~~~~~i~Dt~g~~~-------------~~~~~~~~~~~~d~illV~d~~~~~ 95 (385)
.. .......+.+|||||... +......++..+|++++|+|..+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 011234689999999753 2234456778999999999974332
Q ss_pred -hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHh--cC--CeEEEEcCC---C---CCChHHHHHHHH
Q psy125 96 -TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK--KN--LQYYDISAK---S---NYNFEKPFLWLA 164 (385)
Q Consensus 96 -~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~--~~--~~~~~~Sa~---~---~~gi~~l~~~i~ 164 (385)
.......+...+. ..+.|+++|+||+|+...... ....... .. ..++++++. + +.|+.+++..+.
T Consensus 182 ~~~~~~~~i~~~~~--~~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 182 LANSDALQLAKEVD--PEGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp STTCSHHHHHHHHC--SSCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHhC--CCCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 2122112333332 247899999999998654331 1112221 11 456666554 4 788999999998
Q ss_pred HHHhcCCC
Q psy125 165 RKLIGDPN 172 (385)
Q Consensus 165 ~~l~~~~~ 172 (385)
..+...+.
T Consensus 258 ~~~~~~~~ 265 (315)
T 1jwy_B 258 LYFKNHPI 265 (315)
T ss_dssp HHHHTCTT
T ss_pred HHHhCCCc
Confidence 88866543
No 317
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.50 E-value=4.1e-14 Score=132.05 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=83.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEE--EEEEEEeCCeeEEEEEeeCCCccccCccccc-------c
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV--HPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG-------Y 293 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~ 293 (385)
..++|+++|..|+|||||+++++...+. ......|++. ....+...+. ..+.+|||||+..+..+... +
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~-~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVS-IVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 4689999999999999999998876652 1223334433 3344444443 26899999999988776443 7
Q ss_pred cccCcEEEEEEeCCChhhhhh----------------------------------------hheeccccCCCchHHHHHH
Q psy125 294 YIQGQCAIIMFDVTSRITYKN----------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 294 ~~~~~~~ilv~d~~~~~s~~~----------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
++++|++|+|||++....... |+++||++|.||+++|.+|
T Consensus 111 l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L 190 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTI 190 (423)
T ss_dssp HTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHH
T ss_pred HhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 889999999999954443333 7999999999999999999
Q ss_pred HHHHhcC
Q psy125 334 ARKLIGD 340 (385)
Q Consensus 334 ~~~i~~~ 340 (385)
++.+...
T Consensus 191 ~~~l~~~ 197 (423)
T 3qq5_A 191 SEILPGD 197 (423)
T ss_dssp HHHSCCC
T ss_pred HHhhhhh
Confidence 9998655
No 318
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.49 E-value=1.8e-14 Score=136.20 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=78.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEE--EEEEEeCCeeEEEEEeeCCCccccCcccc--------c
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH--PLVFHTNRGAIRFNVWDTAGQEKFGGLRD--------G 292 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--------~ 292 (385)
..++|+++|.+||||||++|+++...+.. .....|++.. ...+.+++ ..+.||||||+..+..... .
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~-v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI-VTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSC-CSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence 35899999999999999999988654321 1222333332 22334444 5679999999876543322 3
Q ss_pred ccccCcEEEEEEeCCChhhhhh--------------------------------------hheeccccCCCchHHHHHHH
Q psy125 293 YYIQGQCAIIMFDVTSRITYKN--------------------------------------YYDISAKSNYNFEKPFLWLA 334 (385)
Q Consensus 293 ~~~~~~~~ilv~d~~~~~s~~~--------------------------------------~~e~Sak~~~~v~~~f~~l~ 334 (385)
+++.+|++|+|||++++.++++ +++|||++|.||+++|.+|.
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~ 379 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAIL 379 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred hhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHH
Confidence 6889999999999998776654 58999999999999999999
Q ss_pred HHHhcC
Q psy125 335 RKLIGD 340 (385)
Q Consensus 335 ~~i~~~ 340 (385)
+.+...
T Consensus 380 ~~~~~~ 385 (462)
T 3geh_A 380 EIVQTG 385 (462)
T ss_dssp HHHTTS
T ss_pred HHHhcc
Confidence 988654
No 319
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=128.05 Aligned_cols=154 Identities=14% Similarity=0.177 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcc--------cccceeeeEEEEEEe--CCeeEEEEEEeCCCcccccc-----
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKY--------VATLGVEVHPLVFHT--NRGAIRFNVWDTAGQEKFGG----- 73 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~--------~~~~g~t~~~~~~~~--~~~~~~~~i~Dt~g~~~~~~----- 73 (385)
.++|+|+|++|||||||+|+|++..+.... .++.+ .....+.+ ......+++||++|......
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~--~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ--VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE--EEEEECC------CEEEEEEECC-----------C
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee--eeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 579999999999999999998776542111 11111 11111111 22335789999999754311
Q ss_pred --------------------chhhhhccCcEEEEEEeCCCh-hhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhhh
Q psy125 74 --------------------LRDGYYIQGQCAIIMFDVTSR-ITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVK 131 (385)
Q Consensus 74 --------------------~~~~~~~~~d~illV~d~~~~-~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~ 131 (385)
+...++.++++.+++|..... .++.... .|+..+. .+.++++|+||+|+......
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHH
Confidence 112234455555555555543 3454443 4555543 47899999999998654332
Q ss_pred ----HHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125 132 ----AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167 (385)
Q Consensus 132 ----~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l 167 (385)
..+...+...+.+++.+|++++.++++++..+...+
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 344556666788999999999999988777666543
No 320
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.47 E-value=7.4e-15 Score=139.47 Aligned_cols=112 Identities=21% Similarity=0.235 Sum_probs=86.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEE--EEEEEeCCeeEEEEEeeCCCcc-ccCcc--------ccc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH--PLVFHTNRGAIRFNVWDTAGQE-KFGGL--------RDG 292 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~Dt~G~~-~~~~~--------~~~ 292 (385)
.++|+++|.+|||||||+|+++...+. .....+++|.. ...+.++ +..+.||||||+. ++... ...
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a-~vs~~~gTT~d~~~~~i~~~--g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRA-IVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBC-CCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCC-ccCCCCCeeeeeEEEEEecC--CeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 489999999999999999998865432 22233344433 3344444 4568999999998 66432 235
Q ss_pred ccccCcEEEEEEeCCChhhhhh---------------------------------------hheeccccCCCchHHHHHH
Q psy125 293 YYIQGQCAIIMFDVTSRITYKN---------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 293 ~~~~~~~~ilv~d~~~~~s~~~---------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
+++.+|++|+|||++++.++++ +++|||++|.||+++|.+|
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l 399 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 399 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHH
T ss_pred HhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHH
Confidence 7899999999999999877655 5789999999999999999
Q ss_pred HHHHh
Q psy125 334 ARKLI 338 (385)
Q Consensus 334 ~~~i~ 338 (385)
.+.+.
T Consensus 400 ~~~~~ 404 (482)
T 1xzp_A 400 YRETQ 404 (482)
T ss_dssp HHHTH
T ss_pred HHHHh
Confidence 99876
No 321
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.46 E-value=9.8e-15 Score=139.74 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=90.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 303 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 303 (385)
..+|+++|.+++|||||++++....+.....+++..+.....+... .+..+.||||||++.|..++..+++.+|++|||
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 4689999999999999999998776655554444333333333332 233588999999999999999999999999999
Q ss_pred EeCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHHH
Q psy125 304 FDVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLWL 333 (385)
Q Consensus 304 ~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~l 333 (385)
||+++....+. |+++||++|.||+++|.+|
T Consensus 83 VDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 83 VAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp CBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred EECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence 99999655544 6889999999999999999
Q ss_pred HHHHh
Q psy125 334 ARKLI 338 (385)
Q Consensus 334 ~~~i~ 338 (385)
...+.
T Consensus 163 ~~l~~ 167 (537)
T 3izy_P 163 IALAE 167 (537)
T ss_dssp HHHHT
T ss_pred HHhhh
Confidence 98764
No 322
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.45 E-value=8.8e-14 Score=122.55 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=84.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCc-cccccccc-eeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc---------
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGE-FEKKYVAT-LGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD--------- 291 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--------- 291 (385)
..++|+++|.+||||||++++++... +...+.++ ...+.....+..+ +..+.||||||+..+.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 56899999999999999999998766 44444443 1112222233333 45689999999876643322
Q ss_pred --cccccCcEEEEEEeCCChhhhhh-------------------------------------------------------
Q psy125 292 --GYYIQGQCAIIMFDVTSRITYKN------------------------------------------------------- 314 (385)
Q Consensus 292 --~~~~~~~~~ilv~d~~~~~s~~~------------------------------------------------------- 314 (385)
.+++++|++|+|||+++......
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGR 178 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCe
Confidence 26789999999999986221111
Q ss_pred ---h--heeccccCCCchHHHHHHHHHHhcCC
Q psy125 315 ---Y--YDISAKSNYNFEKPFLWLARKLIGDP 341 (385)
Q Consensus 315 ---~--~e~Sak~~~~v~~~f~~l~~~i~~~~ 341 (385)
| ++|||++|.||+++|.+|++.+..+.
T Consensus 179 ~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 179 ICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 1 67899999999999999999998765
No 323
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.45 E-value=1.3e-12 Score=126.47 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=78.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccceeeeEEEEEEeCC-----------------------------e
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNR-----------------------------G 56 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~~~~g~t~~~~~~~~~~-----------------------------~ 56 (385)
...++|+|+|.+|+|||||+|+|++..... .+.+.+++++......... +
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 356899999999999999999988876531 1222222222211111000 0
Q ss_pred e----------EEEEEEeCCCccc-----------cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC
Q psy125 57 A----------IRFNVWDTAGQEK-----------FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP 115 (385)
Q Consensus 57 ~----------~~~~i~Dt~g~~~-----------~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (385)
. ..+.+|||||... +......++..+|++|+|+|+++.........++..+.. .+.|
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~p 220 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--HEDK 220 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--CGGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--cCCC
Confidence 0 2588999999864 223445677899999999999875433333445544432 3578
Q ss_pred EEEEEeCCCCcchhh
Q psy125 116 IVLCGNKVDIKDRKV 130 (385)
Q Consensus 116 ~ilv~nK~Dl~~~~~ 130 (385)
+++|+||+|+.....
T Consensus 221 vilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 221 IRVVLNKADMVETQQ 235 (550)
T ss_dssp EEEEEECGGGSCHHH
T ss_pred EEEEEECCCccCHHH
Confidence 999999999876543
No 324
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.44 E-value=3e-14 Score=122.04 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=68.0
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccc---cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccccccc--
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ-- 296 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-- 296 (385)
...++|+++|.+|||||++++++..+.+... +.++.+.++ ....+.+|||||+++++..+..|++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 3568999999999999999999998776542 444433222 44568999999999999998999887
Q ss_pred --CcEEEEEEeCC-Chhhhhh
Q psy125 297 --GQCAIIMFDVT-SRITYKN 314 (385)
Q Consensus 297 --~~~~ilv~d~~-~~~s~~~ 314 (385)
+|++|+|||++ ++.+|.+
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~ 101 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTT 101 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHH
T ss_pred ccCCEEEEEEECCCChHHHHH
Confidence 99999999999 8877764
No 325
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.43 E-value=2.1e-14 Score=132.16 Aligned_cols=157 Identities=12% Similarity=0.151 Sum_probs=91.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccceee----------------------eE-------------
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVE----------------------VH------------- 47 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g~t----------------------~~------------- 47 (385)
...++|+|+|.+|||||||+|+|++..+.+. ....++.+ +.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 3457999999999999999999887665322 22223211 11
Q ss_pred ----------EEEEEeC-CeeEEEEEEeCCCccc-------------cccchhhhhccCcEE-EEEEeCCChhhhhcHHH
Q psy125 48 ----------PLVFHTN-RGAIRFNVWDTAGQEK-------------FGGLRDGYYIQGQCA-IIMFDVTSRITYKNVPN 102 (385)
Q Consensus 48 ----------~~~~~~~-~~~~~~~i~Dt~g~~~-------------~~~~~~~~~~~~d~i-llV~d~~~~~~~~~~~~ 102 (385)
....... .....+.+|||||... +..+...++.+++.+ ++|.+++..........
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0001111 1135689999999743 222444566666555 45666655332222222
Q ss_pred HHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHH--H-hcC-CeEEEEcCCCCCChHHHHHHHHH
Q psy125 103 WHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFH--R-KKN-LQYYDISAKSNYNFEKPFLWLAR 165 (385)
Q Consensus 103 ~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~--~-~~~-~~~~~~Sa~~~~gi~~l~~~i~~ 165 (385)
+...+. ..+.|+++|+||+|+..... ......-. . ..+ ..++.+||+++.|+++++..+..
T Consensus 189 i~~~~~--~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVD--PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHC--TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhC--cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 333332 24789999999999865432 11111100 0 011 25677999999999999888876
No 326
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.40 E-value=1.7e-12 Score=125.51 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=85.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCC--------------------CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEF--------------------EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~--------------------~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~ 68 (385)
.-+|+|+|+.++|||||..+|+...- ........|+|.........+++..++++||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 45799999999999999999863110 0011223455555556667778899999999999
Q ss_pred cccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125 69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 127 (385)
Q Consensus 69 ~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~ 127 (385)
.+|.......++-+|++|+|+|+......+....|..... .++|.++++||+|...
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCCEEEEEECTTSCC
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH---hCCceEEEEecccchh
Confidence 9999888899999999999999998766655445543332 5899999999999754
No 327
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.40 E-value=4.2e-13 Score=120.43 Aligned_cols=117 Identities=18% Similarity=0.120 Sum_probs=86.7
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc---------ccCcccccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE---------KFGGLRDGY 293 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~ 293 (385)
...+++++|.+|||||||++++++..+. ..++.+++++......+......+.+|||||+. .+......+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~-i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS-ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE-ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 4568999999999999999998876543 223344455433322233345678999999997 345556678
Q ss_pred cccCcEEEEEEeCCChhhhhh---------------------------------------------hheeccccCCCchH
Q psy125 294 YIQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEK 328 (385)
Q Consensus 294 ~~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~ 328 (385)
++.+|++++|+|+++ -+-.+ ++++||++|.|+++
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDT 164 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHH
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHH
Confidence 999999999999976 22111 67899999999999
Q ss_pred HHHHHHHHHhcCC
Q psy125 329 PFLWLARKLIGDP 341 (385)
Q Consensus 329 ~f~~l~~~i~~~~ 341 (385)
+|+++.+.+...+
T Consensus 165 l~~~i~~~l~~~~ 177 (301)
T 1ega_A 165 IAAIVRKHLPEAT 177 (301)
T ss_dssp HHHHHHTTCCBCC
T ss_pred HHHHHHHhCCcCC
Confidence 9999998876544
No 328
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=4.6e-12 Score=115.24 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEE--EEeCCe---------------eEEEEEEeCCCcccc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--FHTNRG---------------AIRFNVWDTAGQEKF 71 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~--~~~~~~---------------~~~~~i~Dt~g~~~~ 71 (385)
.++|+|+|.+|||||||+|+|.+... ...+.++.|..... ...... ...+.+|||||+..+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~--~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 37999999999999999999887652 22222333332221 222211 257999999998754
Q ss_pred c----cc---hhhhhccCcEEEEEEeCCC
Q psy125 72 G----GL---RDGYYIQGQCAIIMFDVTS 93 (385)
Q Consensus 72 ~----~~---~~~~~~~~d~illV~d~~~ 93 (385)
. .+ ...+++++|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 12 2335789999999999986
No 329
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.40 E-value=5.4e-13 Score=122.86 Aligned_cols=115 Identities=19% Similarity=0.096 Sum_probs=81.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc---------ccccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---------LRDGY 293 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~~~ 293 (385)
..++++++|.+||||||+++++....+... ...+++.......+......+.+|||||+..+.. ....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIA--SYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEE--CCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 457999999999999999999886653221 1112222222222222356789999999865421 11134
Q ss_pred cccCcEEEEEEeCCChh--hhhh---------------------------------------------hheeccccCCCc
Q psy125 294 YIQGQCAIIMFDVTSRI--TYKN---------------------------------------------YYDISAKSNYNF 326 (385)
Q Consensus 294 ~~~~~~~ilv~d~~~~~--s~~~---------------------------------------------~~e~Sak~~~~v 326 (385)
...+|++|+|+|++++. ++++ +++|||++|.||
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi 323 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGI 323 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTH
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCH
Confidence 55799999999999876 4443 679999999999
Q ss_pred hHHHHHHHHHHhc
Q psy125 327 EKPFLWLARKLIG 339 (385)
Q Consensus 327 ~~~f~~l~~~i~~ 339 (385)
+++|.+|.+.+..
T Consensus 324 ~~l~~~i~~~l~~ 336 (357)
T 2e87_A 324 DLVKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998744
No 330
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.40 E-value=2.6e-13 Score=131.83 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=83.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC--ccc-----ccc------ccceeeEEEEEEEEe-----CCeeEEEEEeeCCCccc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTG--EFE-----KKY------VATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEK 285 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~--~~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~ 285 (385)
..+++++|..++|||||+++++.. .+. ..+ ..+.|.|.....+.+ ++..+.++||||||+..
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 468999999999999999998742 111 111 112344544333333 45568899999999999
Q ss_pred cCcccccccccCcEEEEEEeCCChhhhhh---------------------------------------------hheecc
Q psy125 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISA 320 (385)
Q Consensus 286 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sa 320 (385)
|......+++.+|++|+|+|++++.+++. ++++||
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSA 163 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSA 163 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeec
Confidence 99988999999999999999999776665 688999
Q ss_pred ccCCCchHHHHHHHHHHhcC
Q psy125 321 KSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 321 k~~~~v~~~f~~l~~~i~~~ 340 (385)
++|.||+++|++|++.+...
T Consensus 164 ktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 164 KTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp TTCTTHHHHHHHHHHHSCCC
T ss_pred ccCCCchhHHHHHhhcCCCc
Confidence 99999999999999988653
No 331
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.40 E-value=3.5e-13 Score=124.36 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=92.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccce---e----------------------------------------
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG---V---------------------------------------- 44 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g---~---------------------------------------- 44 (385)
.-++|+|+|++|||||||+|+|++..+.+....... +
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 345999999999999999999888665332211110 0
Q ss_pred ---------eeEEEEEEe-CCeeEEEEEEeCCCcccc-------------ccchhhhhccCcEEEEEEeCCChhhhhcHH
Q psy125 45 ---------EVHPLVFHT-NRGAIRFNVWDTAGQEKF-------------GGLRDGYYIQGQCAIIMFDVTSRITYKNVP 101 (385)
Q Consensus 45 ---------t~~~~~~~~-~~~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~d~illV~d~~~~~~~~~~~ 101 (385)
........+ ......+.+|||||...+ ..+...++.++|++|+|++..+......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~-- 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence 000000000 111335889999998765 3455678899999999998755433221
Q ss_pred HHHHHHHHh-cCCCCEEEEEeCCCCcchhhh-HH-HHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125 102 NWHRDLVRV-CENIPIVLCGNKVDIKDRKVK-AK-SIVFHRKKNLQYYDISAKSNYNFEKPFLW 162 (385)
Q Consensus 102 ~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~~-~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (385)
.|+..+... ..+.|+++|+||+|+...... .. ...+....+..++.+++.++.++++.+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 233322222 246799999999998754322 11 11122234568899999988877664433
No 332
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.39 E-value=9.1e-13 Score=121.17 Aligned_cols=103 Identities=9% Similarity=-0.019 Sum_probs=69.9
Q ss_pred eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHH-H
Q psy125 57 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS-I 135 (385)
Q Consensus 57 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~-~ 135 (385)
++.+.++||||... .....+..+|++++|+|.......+.+. ......|.++|+||+|+......... .
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~~~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------KGVLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------TTSGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------HhHhhcCCEEEEECCCCcChhHHHHHHH
Confidence 46789999999542 2334558899999999987654433221 11124588999999998654322111 1
Q ss_pred HHHH----h------cCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 136 VFHR----K------KNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 136 ~~~~----~------~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
.+.. . ...+++.+||+++.|+++++..|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1111 1 14689999999999999999999888754
No 333
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.39 E-value=4.2e-13 Score=117.02 Aligned_cols=87 Identities=14% Similarity=0.031 Sum_probs=57.7
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc--------cccCcccccc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ--------EKFGGLRDGY 293 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~--------~~~~~~~~~~ 293 (385)
...++|+++|.+||||||++|+++...+.....++.++|...........+..+.||||||+ +++......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 35799999999999999999999877665444444445554444444434567899999997 3333322223
Q ss_pred ----cccCcEEEEEEeCCC
Q psy125 294 ----YIQGQCAIIMFDVTS 308 (385)
Q Consensus 294 ----~~~~~~~ilv~d~~~ 308 (385)
++++|++|+|+|+++
T Consensus 99 ~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHHHTTCCSEEEEEEETTB
T ss_pred HHhcCCCCCEEEEEEeCCC
Confidence 389999999999985
No 334
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.37 E-value=2.4e-12 Score=120.49 Aligned_cols=117 Identities=16% Similarity=0.095 Sum_probs=85.8
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEE-------EEE---------e---CCeeEEEEEeeCCC
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL-------VFH---------T---NRGAIRFNVWDTAG 282 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------~---~~~~~~l~i~Dt~G 282 (385)
...++|+++|.+++|||||+++++....... ......+.... .+. . ......+.||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3568999999999999999999875322211 11111111000 000 0 11236789999999
Q ss_pred ccccCcccccccccCcEEEEEEeCCChhhhhh------------------------------------------------
Q psy125 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------------------------ 314 (385)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~------------------------------------------------ 314 (385)
++.|......++..+|++|+|+|+++..++..
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 164 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE 164 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTT
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCC
Confidence 99999988889999999999999998764433
Q ss_pred ---hheeccccCCCchHHHHHHHHHHhc
Q psy125 315 ---YYDISAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 315 ---~~e~Sak~~~~v~~~f~~l~~~i~~ 339 (385)
++++||++|.||+++|.+|.+.+..
T Consensus 165 ~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 165 NVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 6899999999999999999987754
No 335
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.37 E-value=4.4e-13 Score=130.02 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=84.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC--ccc-----ccccc------ceeeEEEE----EEEEe-CCeeEEEEEeeCCCccc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTG--EFE-----KKYVA------TLGVEVHP----LVFHT-NRGAIRFNVWDTAGQEK 285 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~--~~~-----~~~~~------~~~~~~~~----~~~~~-~~~~~~l~i~Dt~G~~~ 285 (385)
..+++++|..++|||||+++++.. .+. ..+.. ..|.|... ..+.. ++..+.++||||||+..
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 468999999999999999998742 111 11111 12223221 11111 45568899999999999
Q ss_pred cCcccccccccCcEEEEEEeCCChhhhhh---------------------------------------------hheecc
Q psy125 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISA 320 (385)
Q Consensus 286 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sa 320 (385)
|......+++.+|++|+|+|++++.+++. ++++||
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSA 165 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASA 165 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBT
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEe
Confidence 98888889999999999999999876665 588999
Q ss_pred ccCCCchHHHHHHHHHHhcC
Q psy125 321 KSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 321 k~~~~v~~~f~~l~~~i~~~ 340 (385)
++|.||+++|++|++.+...
T Consensus 166 ktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 166 KEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp TTTBSHHHHHHHHHHHSCCC
T ss_pred ecCCCchHHHHHHHHhcccc
Confidence 99999999999999988653
No 336
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.37 E-value=3.2e-13 Score=129.35 Aligned_cols=89 Identities=22% Similarity=0.247 Sum_probs=65.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcC--ccccc---------------------------cccceeeEEEEEEEEeCCeeE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YVATLGVEVHPLVFHTNRGAI 273 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 273 (385)
..+|++++|.+++|||||+++++.. .+... .....|.+.......++...+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 5699999999999999999998743 11111 111124444444444555667
Q ss_pred EEEEeeCCCccccCcccccccccCcEEEEEEeCCChhh
Q psy125 274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRIT 311 (385)
Q Consensus 274 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s 311 (385)
.+.||||||+++|......+++.+|++|+|||++++.+
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~ 149 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF 149 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC---
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc
Confidence 89999999999999988999999999999999999744
No 337
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=2.8e-13 Score=124.63 Aligned_cols=121 Identities=17% Similarity=0.293 Sum_probs=70.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhc-Cccccccc--------cceeeEEEEEEEEeCCeeEEEEEeeCCCc-------ccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLT-GEFEKKYV--------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQ-------EKF 286 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------~~~ 286 (385)
..++|+++|.+|+|||||+++++. +.+...+. +|++.+.....+..++....+.+|||||+ +++
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 358999999999999999999653 33433332 45554444444444556678999999999 788
Q ss_pred Ccccc-------cccccCcEE-----------EEEEeCCC-hhhhhh---------------------------------
Q psy125 287 GGLRD-------GYYIQGQCA-----------IIMFDVTS-RITYKN--------------------------------- 314 (385)
Q Consensus 287 ~~~~~-------~~~~~~~~~-----------ilv~d~~~-~~s~~~--------------------------------- 314 (385)
..+.. .|+++++++ ++||++++ +.+|..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~ 195 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERL 195 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHH
Confidence 88887 677666554 48888876 445443
Q ss_pred --------------hheeccccCCCchHHHHHHHHHHhcCCCcc
Q psy125 315 --------------YYDISAKSNYNFEKPFLWLARKLIGDPNLE 344 (385)
Q Consensus 315 --------------~~e~Sak~~~~v~~~f~~l~~~i~~~~~~~ 344 (385)
|+++||++|.| ++.|.++++.|...-++.
T Consensus 196 k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~ 238 (361)
T 2qag_A 196 KKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFS 238 (361)
T ss_dssp HHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCE
T ss_pred HHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCC
Confidence 89999999999 999999999998765543
No 338
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.36 E-value=7.6e-13 Score=121.16 Aligned_cols=103 Identities=9% Similarity=-0.036 Sum_probs=63.1
Q ss_pred eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH-HH
Q psy125 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA-KS 134 (385)
Q Consensus 56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~-~~ 134 (385)
.+..+.++||+|.... .......+|++++|+|+......+.+. ..+ -..|.++++||+|+....... ..
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i----l~~~~ivVlNK~Dl~~~~~~~~~~ 234 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI----IEMADLVAVTKSDGDLIVPARRIQ 234 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH----HhcCCEEEEeeecCCCchhHHHHH
Confidence 3457889999996421 234567899999999987653222111 111 245788999999986432111 11
Q ss_pred HHHHH----------hcCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 135 IVFHR----------KKNLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 135 ~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
..+.. ....+++.+|++++.|+++++..|.+.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 11111 11357889999999999999999988763
No 339
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.36 E-value=7.4e-13 Score=115.07 Aligned_cols=88 Identities=15% Similarity=0.041 Sum_probs=60.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc-----------ccCcccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE-----------KFGGLRD 291 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~~ 291 (385)
..++|+++|.+||||||+++++++..+.....++.+++.......+...+..+.||||||.. .+.....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 107 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCIL 107 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999877765554433444433333332234568999999953 3444455
Q ss_pred cccccCcEEEEEEeCCChh
Q psy125 292 GYYIQGQCAIIMFDVTSRI 310 (385)
Q Consensus 292 ~~~~~~~~~ilv~d~~~~~ 310 (385)
.+++++|++|+|+|+++..
T Consensus 108 ~~~~~~~~~l~v~d~~~~~ 126 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRYT 126 (239)
T ss_dssp HTTTCCSEEEEEEETTCCS
T ss_pred hcCCCCcEEEEEeeCCCCC
Confidence 5778999999999987543
No 340
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.35 E-value=3.4e-12 Score=119.65 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=79.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhc---Ccccccccc--ceeeEEEEEEEEe-------------C--C----eeEEEEEe
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLT---GEFEKKYVA--TLGVEVHPLVFHT-------------N--R----GAIRFNVW 278 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~l~i~ 278 (385)
..++++++|..++|||||++++.+ +.+.....+ |+...+....+.. + + ....+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 468999999999999999999872 233333333 5544444333321 1 1 13679999
Q ss_pred eCCCccccCcccccccccCcEEEEEEeCCC----hhhhhh----------------------------------------
Q psy125 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTS----RITYKN---------------------------------------- 314 (385)
Q Consensus 279 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----~~s~~~---------------------------------------- 314 (385)
||||++.|.......+..+|++|||+|+++ +++++.
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~ 166 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG 166 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh
Confidence 999999987766667778899999999995 455554
Q ss_pred -------hheeccccCCCchHHHHHHHHHHhc
Q psy125 315 -------YYDISAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 315 -------~~e~Sak~~~~v~~~f~~l~~~i~~ 339 (385)
|+++||++|.||+++|++|.+.+..
T Consensus 167 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 167 TIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp STTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 6899999999999999999987754
No 341
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.35 E-value=5.4e-13 Score=113.44 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=75.4
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc----------cCccccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK----------FGGLRDG 292 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 292 (385)
...+++++|.+|||||||++++.+..+...+.++.|.++....+.+++ .+.+|||||+.. +......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 457999999999999999999887666666778888776555444443 367999999743 2222223
Q ss_pred cc---ccCcEEEEEEeCCChhhhhh------------------------------------------------hheeccc
Q psy125 293 YY---IQGQCAIIMFDVTSRITYKN------------------------------------------------YYDISAK 321 (385)
Q Consensus 293 ~~---~~~~~~ilv~d~~~~~s~~~------------------------------------------------~~e~Sak 321 (385)
|+ +.++++++|+|++++.++.+ +++|||+
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal 181 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSL 181 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeec
Confidence 44 57899999999998765542 5679999
Q ss_pred cCCCchHHHHHHHHHHhc
Q psy125 322 SNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 322 ~~~~v~~~f~~l~~~i~~ 339 (385)
++.|++++|.+|.+.+.+
T Consensus 182 ~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 182 KKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TTBSHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999998886643
No 342
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.35 E-value=1e-12 Score=119.38 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=82.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccc-cccc-cceeeEEEEEEEEeCCeeEEEEEeeCCCcc----ccCcccccccc---
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFE-KKYV-ATLGVEVHPLVFHTNRGAIRFNVWDTAGQE----KFGGLRDGYYI--- 295 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----~~~~~~~~~~~--- 295 (385)
.+|+++|.+|||||||++++....+. ..+. .|...+.. .+.+++ ...+.||||||+. ++..+...|++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 36889999999999999998755422 1111 22222222 233343 2468999999964 45556666655
Q ss_pred cCcEEEEEEeCCC---hhhhhh------------------------------------------------hheeccccCC
Q psy125 296 QGQCAIIMFDVTS---RITYKN------------------------------------------------YYDISAKSNY 324 (385)
Q Consensus 296 ~~~~~ilv~d~~~---~~s~~~------------------------------------------------~~e~Sak~~~ 324 (385)
.++++|+|||+++ +.++++ +++|||+++.
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~ 315 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTRE 315 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCc
Confidence 4999999999998 777654 6899999999
Q ss_pred CchHHHHHHHHHHhcCC
Q psy125 325 NFEKPFLWLARKLIGDP 341 (385)
Q Consensus 325 ~v~~~f~~l~~~i~~~~ 341 (385)
||+++|.+|++.+...+
T Consensus 316 gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 316 GLRELLFEVANQLENTP 332 (342)
T ss_dssp TTHHHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHhhCc
Confidence 99999999999986654
No 343
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.32 E-value=2.9e-13 Score=128.55 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=83.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 302 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 302 (385)
+..+++++|..++|||||++++....+.....+.+..+.....+..+ +..+.||||||++.|..++..++..+|++||
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 34689999999999999999988655443322222111111122222 3457899999999999999999999999999
Q ss_pred EEeCCC---hhhhhh-----------------------------------------------hheeccccCCCchHHHHH
Q psy125 303 MFDVTS---RITYKN-----------------------------------------------YYDISAKSNYNFEKPFLW 332 (385)
Q Consensus 303 v~d~~~---~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~ 332 (385)
|||+++ +++++. |+++||++|.||+++|.+
T Consensus 81 VVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~ 160 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDA 160 (501)
T ss_dssp EEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHH
T ss_pred EeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhh
Confidence 999998 344333 678999999999999999
Q ss_pred HHH
Q psy125 333 LAR 335 (385)
Q Consensus 333 l~~ 335 (385)
|+.
T Consensus 161 I~~ 163 (501)
T 1zo1_I 161 ILL 163 (501)
T ss_dssp TTT
T ss_pred hhh
Confidence 875
No 344
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.31 E-value=8e-13 Score=129.39 Aligned_cols=88 Identities=23% Similarity=0.240 Sum_probs=65.8
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCcccccc-----------------------------ccceeeEEEEEEEEeCCee
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY-----------------------------VATLGVEVHPLVFHTNRGA 272 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 272 (385)
...++|+++|.+|+|||||+++++.....-.. ....|+|.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45789999999999999999998854211000 0013444433333444456
Q ss_pred EEEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125 273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 309 (385)
Q Consensus 273 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 309 (385)
+.+.||||||+++|......+++.+|++|+|+|++++
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence 6789999999999998888899999999999999984
No 345
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.31 E-value=9.1e-12 Score=116.86 Aligned_cols=118 Identities=16% Similarity=0.068 Sum_probs=87.7
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhc---Ccccccccc--ceeeEEEEEEEEe-------------C--C----eeEEEEE
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLT---GEFEKKYVA--TLGVEVHPLVFHT-------------N--R----GAIRFNV 277 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~l~i 277 (385)
...++|+++|..++|||||++++++ +.+.....+ |+...+....+.. . + ....+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 3568999999999999999999872 334444333 5544444333321 1 1 1367999
Q ss_pred eeCCCccccCcccccccccCcEEEEEEeCCC----hhhhhh---------------------------------------
Q psy125 278 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS----RITYKN--------------------------------------- 314 (385)
Q Consensus 278 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----~~s~~~--------------------------------------- 314 (385)
|||||++.|.......+..+|++|||+|+++ +++++.
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 167 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE 167 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence 9999999887666666778899999999995 455554
Q ss_pred --------hheeccccCCCchHHHHHHHHHHhc
Q psy125 315 --------YYDISAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 315 --------~~e~Sak~~~~v~~~f~~l~~~i~~ 339 (385)
++++||++|.||+++|++|.+.+..
T Consensus 168 ~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 168 GTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 6889999999999999999987754
No 346
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.30 E-value=2.9e-12 Score=122.33 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=84.0
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCc-------cccccccceeeEEE--EEEEEeCCeeEEEEEeeCCCccccCccccc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGE-------FEKKYVATLGVEVH--PLVFHTNRGAIRFNVWDTAGQEKFGGLRDG 292 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 292 (385)
...++++++|..++|||||+++++... +..... .|.|.. ...+..+ .+.+.||||||++.|......
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~--~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQK--RGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC----------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCccccccccccccc--CccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHH
Confidence 356899999999999999999987654 111111 122221 1122233 467899999999999888888
Q ss_pred ccccCcEEEEEEeCCC---hhhhhh-----------------------------------------------hheecccc
Q psy125 293 YYIQGQCAIIMFDVTS---RITYKN-----------------------------------------------YYDISAKS 322 (385)
Q Consensus 293 ~~~~~~~~ilv~d~~~---~~s~~~-----------------------------------------------~~e~Sak~ 322 (385)
++..+|++|+|+|+++ +++++. |+++||++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 8999999999999998 555544 47899999
Q ss_pred CCCchHHHHHHHHHHh
Q psy125 323 NYNFEKPFLWLARKLI 338 (385)
Q Consensus 323 ~~~v~~~f~~l~~~i~ 338 (385)
|.||+++|++|.+.+.
T Consensus 173 g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 173 GFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhc
Confidence 9999999999999875
No 347
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.30 E-value=1.1e-11 Score=113.55 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=83.3
Q ss_pred eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCC----------hhhhhcHHHHHHHHHH--hcCCCCEEEEEeCC
Q psy125 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS----------RITYKNVPNWHRDLVR--VCENIPIVLCGNKV 123 (385)
Q Consensus 56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~----------~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~ 123 (385)
+.+.+.+|||+|++.++..+..++.+++++|+|+|+++ ..++.+...|+..+.. ...+.|+++++||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 46899999999999999999999999999999999999 5677777777777665 24689999999999
Q ss_pred CCcchh-----------------h-hHHHHHHH--------H---hcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 124 DIKDRK-----------------V-KAKSIVFH--------R---KKNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 124 Dl~~~~-----------------~-~~~~~~~~--------~---~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
|+..++ . ..+...+. . .....++++||+++.|++++|..+.+.+..
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 986432 1 22333332 1 234578899999999999999999887753
No 348
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.30 E-value=1.5e-12 Score=115.39 Aligned_cols=116 Identities=17% Similarity=0.302 Sum_probs=66.0
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhc-Ccccccc-------ccceeeEEEEEEEEeCCeeEEEEEeeCCCccc-------cC
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLT-GEFEKKY-------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-------FG 287 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~ 287 (385)
..++|+++|.+|+|||||+|+++. +.+...+ .+|++.+.....+..++..+.+.||||||+.. +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 358999999999999999999654 3444444 56666666666665566667899999999832 22
Q ss_pred ccc-------ccccc-------------cCcEEEEEEeCCChh-hhhh--------------------------------
Q psy125 288 GLR-------DGYYI-------------QGQCAIIMFDVTSRI-TYKN-------------------------------- 314 (385)
Q Consensus 288 ~~~-------~~~~~-------------~~~~~ilv~d~~~~~-s~~~-------------------------------- 314 (385)
.+. ..|+. .+|+++++++.+... .-.+
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~ 166 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFK 166 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHH
Confidence 222 22332 378899988766521 1111
Q ss_pred -------------hheeccccCCCchHHHHHHHHHHh
Q psy125 315 -------------YYDISAKSNYNFEKPFLWLARKLI 338 (385)
Q Consensus 315 -------------~~e~Sak~~~~v~~~f~~l~~~i~ 338 (385)
++++||+++.|+++++.+|.+.+.
T Consensus 167 ~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 167 KQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 788999999999999999988653
No 349
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.29 E-value=2.6e-12 Score=125.06 Aligned_cols=92 Identities=21% Similarity=0.213 Sum_probs=66.1
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCcccc----ccccceeeEEEEEEE------------EeCCeeEEEEEeeCCCcccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEK----KYVATLGVEVHPLVF------------HTNRGAIRFNVWDTAGQEKF 286 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------------~~~~~~~~l~i~Dt~G~~~~ 286 (385)
+..+|+++|..++|||||+++++...+.. ....++|.++..... .++.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 34789999999999999999988554422 122344433322110 00011124899999999999
Q ss_pred CcccccccccCcEEEEEEeCCC---hhhhhh
Q psy125 287 GGLRDGYYIQGQCAIIMFDVTS---RITYKN 314 (385)
Q Consensus 287 ~~~~~~~~~~~~~~ilv~d~~~---~~s~~~ 314 (385)
..++..+++.+|++|+|||+++ +++++.
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~ 114 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEA 114 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHH
Confidence 9999999999999999999999 777665
No 350
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.29 E-value=1.1e-11 Score=114.43 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=90.2
Q ss_pred eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCC----------hhhhhcHHHHHHHHHHh--cCCCCEEEEEeCC
Q psy125 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS----------RITYKNVPNWHRDLVRV--CENIPIVLCGNKV 123 (385)
Q Consensus 56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~----------~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~ 123 (385)
+.+.+.+|||+|++.++..+..++++++++|+|||+++ ..++.....|+..+... ..+.|++|++||+
T Consensus 215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECH
T ss_pred CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEECh
Confidence 35899999999999999999999999999999999999 77888888888887753 4678999999999
Q ss_pred CCcchhh--------------------------------hHHHHHH-----HHh--------cCCeEEEEcCCCCCChHH
Q psy125 124 DIKDRKV--------------------------------KAKSIVF-----HRK--------KNLQYYDISAKSNYNFEK 158 (385)
Q Consensus 124 Dl~~~~~--------------------------------~~~~~~~-----~~~--------~~~~~~~~Sa~~~~gi~~ 158 (385)
|+...+. ..+...+ ... ....++++||+++.|+++
T Consensus 295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~ 374 (402)
T 1azs_C 295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 374 (402)
T ss_dssp HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence 9854322 1122222 111 234677999999999999
Q ss_pred HHHHHHHHHhc
Q psy125 159 PFLWLARKLIG 169 (385)
Q Consensus 159 l~~~i~~~l~~ 169 (385)
.|..+...+..
T Consensus 375 vF~~v~~~I~~ 385 (402)
T 1azs_C 375 VFNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887643
No 351
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.29 E-value=7.1e-12 Score=107.39 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=89.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCC----cccccceeeeE--------EEEEEe------------------CCee
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEK----KYVATLGVEVH--------PLVFHT------------------NRGA 57 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~----~~~~~~g~t~~--------~~~~~~------------------~~~~ 57 (385)
+..+|+++|.+|||||||+++|+...... .....++.+.+ ...... ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34689999999999999999987642111 00111111000 000111 1123
Q ss_pred EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh--hhHHHH
Q psy125 58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--VKAKSI 135 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--~~~~~~ 135 (385)
..+.+|||+|+... ...+....+.+++|+|+..... ....+.. . .+.|.++++||+|+.... ...+..
T Consensus 109 ~d~iiidt~G~~~~---~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~-~----~~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 109 CDLLLIENVGNLIC---PVDFDLGENYRVVMVSVTEGDD--VVEKHPE-I----FRVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp CSEEEEEEEEBSSG---GGGCCCSCSEEEEEEEGGGCTT--HHHHCHH-H----HHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CCEEEEeCCCCCCC---CchhccccCcEEEEEeCCCcch--hhhhhhh-h----hhcCCEEEEecccCCcchhhHHHHHH
Confidence 56788898885110 0111135678899999876532 1111111 1 246889999999986532 223333
Q ss_pred HHHHh--cCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 136 VFHRK--KNLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 136 ~~~~~--~~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
..... ...+++++|++++.|+++++..|.+.+.
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 33332 2468999999999999999999988764
No 352
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.2e-12 Score=109.78 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=63.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccc---cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccccccc---
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ--- 296 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--- 296 (385)
..++|+++|.+||||||+++++....+... +.++.+ .+...+.+.+|||||++.+...+..+++.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 568999999999999999999998766442 222221 11134567899999999999888888876
Q ss_pred -CcEEEEEEeCC-Chhhhhh
Q psy125 297 -GQCAIIMFDVT-SRITYKN 314 (385)
Q Consensus 297 -~~~~ilv~d~~-~~~s~~~ 314 (385)
+|++|+|||++ ++.+|.+
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~ 137 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTT 137 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHH
T ss_pred cCCEEEEEEECCCCchhHHH
Confidence 89999999999 8888865
No 353
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.29 E-value=4.3e-12 Score=128.82 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=83.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCC--------ccc------ccceeeeEEE----EEE------------eCCee
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEK--------KYV------ATLGVEVHPL----VFH------------TNRGA 57 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~--------~~~------~~~g~t~~~~----~~~------------~~~~~ 57 (385)
...+|+|+|+.|+|||||+++|+...-.. .+. ...|.|.... .+. .+...
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 45799999999999999999988641100 000 1122232211 122 13347
Q ss_pred EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125 58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 126 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~ 126 (385)
+.+++|||||+.++...+..+++.+|++|+|+|+++...++....|..... .++|+++++||+|+.
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCcc
Confidence 899999999999998888999999999999999999877776554543332 578999999999986
No 354
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.28 E-value=1.9e-12 Score=124.46 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=66.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc------------------Ccccccc--ccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLT------------------GEFEKKY--VATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 283 (385)
..+|+++|.+|+|||||+++++. ..+.... ....|.+.......+....+.+.||||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 46899999999999999999861 1111100 001233333333334445677999999999
Q ss_pred cccCcccccccccCcEEEEEEeCCChhhhhh
Q psy125 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314 (385)
Q Consensus 284 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 314 (385)
..|......+++.+|++|+|+|+++..+++.
T Consensus 93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t 123 (528)
T 3tr5_A 93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRT 123 (528)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHH
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHH
Confidence 9999999999999999999999998776665
No 355
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.28 E-value=8e-12 Score=114.16 Aligned_cols=102 Identities=11% Similarity=-0.004 Sum_probs=65.1
Q ss_pred eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH----
Q psy125 57 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA---- 132 (385)
Q Consensus 57 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~---- 132 (385)
++.+.++||||..... ......+|++++|+|.......+.+.. .. .+.|.++|+||+|+.......
T Consensus 148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GL----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HH----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH---hh----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5679999999975432 234689999999999876533222111 11 135788999999987542221
Q ss_pred HHHHHHHh-c------CCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 133 KSIVFHRK-K------NLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 133 ~~~~~~~~-~------~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
+....... . ..+++++||+++.|+++++..|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11111111 1 357889999999999999999988664
No 356
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.28 E-value=7.9e-12 Score=123.58 Aligned_cols=194 Identities=12% Similarity=0.144 Sum_probs=116.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccc-c--------------------------------------------
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVA-T-------------------------------------------- 41 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~-~-------------------------------------------- 41 (385)
...++|+++|..++|||||+|+|++..+.+.... +
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3457999999999999999999888655221110 0
Q ss_pred ----ceeeeEEEEEEeC-CeeEEEEEEeCCCccccc-------------cchhhhh-ccCcEEEEEEeCCChhhhhcHHH
Q psy125 42 ----LGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFG-------------GLRDGYY-IQGQCAIIMFDVTSRITYKNVPN 102 (385)
Q Consensus 42 ----~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~-------------~~~~~~~-~~~d~illV~d~~~~~~~~~~~~ 102 (385)
.+++.......+. .....+.++||||..... .+...++ ..+|++++|+|++..........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0001011111110 012247899999975411 1223333 57899999999987644433223
Q ss_pred HHHHHHHhcCCCCEEEEEeCCCCcchhhhH-HHHHHHHh-----cCCeEEEEcCCCCCChHHHHHHHHHH---HhcCCCc
Q psy125 103 WHRDLVRVCENIPIVLCGNKVDIKDRKVKA-KSIVFHRK-----KNLQYYDISAKSNYNFEKPFLWLARK---LIGDPNL 173 (385)
Q Consensus 103 ~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~-~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~i~~~---l~~~~~~ 173 (385)
+...+.. .+.|+++|+||+|+....... .... ... ....++.+||+++.|+++++..+... +...|.+
T Consensus 209 ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y 285 (772)
T 3zvr_A 209 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY 285 (772)
T ss_dssp HHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch
Confidence 3444332 478999999999987543321 1111 001 11256789999999999999998873 4444332
Q ss_pred ccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchh
Q psy125 174 EFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDED 214 (385)
Q Consensus 174 ~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 214 (385)
....|...+..+.+.+++.....+.++.|+
T Consensus 286 -----------d~ltDr~g~~~LaEiLrEkL~~hi~~ELP~ 315 (772)
T 3zvr_A 286 -----------RHLADRMGTPYLQKVLNQQLTNHIRDTLPG 315 (772)
T ss_dssp -----------GGGGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhhhhcccHHHHHHHHHHHHHHHHHhhCcc
Confidence 123355667777777777776666666665
No 357
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.27 E-value=5.4e-12 Score=115.43 Aligned_cols=114 Identities=13% Similarity=0.021 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc----c---hhhhhcc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----L---RDGYYIQ 81 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----~---~~~~~~~ 81 (385)
..+|+|||.||||||||+|+|.+.. ..+.+.+++|+++........+..+.++||||...... + ....++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 3589999999999999999966532 55678889999999887777788999999999753221 1 2234578
Q ss_pred CcEEEEEEeCCChhhhhcHHHHHHHHHH---hcCCCCEEEEEeCCCCc
Q psy125 82 GQCAIIMFDVTSRITYKNVPNWHRDLVR---VCENIPIVLCGNKVDIK 126 (385)
Q Consensus 82 ~d~illV~d~~~~~~~~~~~~~~~~l~~---~~~~~~~ilv~nK~Dl~ 126 (385)
+|++++|+|++++.... .....++.. .....|.++++||.|..
T Consensus 150 ad~il~vvD~~~p~~~~--~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHK--QIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTSHHHHH--HHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cCccccccccCccHHHH--HHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 99999999999874321 112222222 23467888999999963
No 358
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.27 E-value=9.5e-12 Score=117.46 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=65.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCc--cccc---------------------------cccceeeEEEEEEEEeCCeeE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YVATLGVEVHPLVFHTNRGAI 273 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 273 (385)
..++++++|..++|||||+++++... +... .....|.|.......+.....
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 56899999999999999999985321 1110 011134455444444555566
Q ss_pred EEEEeeCCCccccCcccccccccCcEEEEEEeCCChh
Q psy125 274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI 310 (385)
Q Consensus 274 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 310 (385)
.+.||||||+++|......+++.+|++|||+|+++..
T Consensus 96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~ 132 (439)
T 3j2k_7 96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGE 132 (439)
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCc
Confidence 8999999999999888888999999999999999863
No 359
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.26 E-value=3.7e-12 Score=114.45 Aligned_cols=114 Identities=14% Similarity=0.187 Sum_probs=78.1
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccc----ccccee----------------------eEEE--------------
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLG----------------------VEVH-------------- 262 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~----~~~~~~----------------------~~~~-------------- 262 (385)
...+|+++|.+|||||||++++++..+... ....++ +++.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999997776321 111121 1110
Q ss_pred ---------EEEEEeC-CeeEEEEEeeCCCccc-------------cCcccccccccCcEEE-EEEeCCChhhhhh----
Q psy125 263 ---------PLVFHTN-RGAIRFNVWDTAGQEK-------------FGGLRDGYYIQGQCAI-IMFDVTSRITYKN---- 314 (385)
Q Consensus 263 ---------~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i-lv~d~~~~~s~~~---- 314 (385)
...+.+. .....+.||||||+.. +..+...|++.++++| +|+|+++..+.++
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 0000000 0125689999999753 3445556888998777 6999987554333
Q ss_pred --------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 315 --------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 315 --------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
++++||++|.|++++|.+|.+.
T Consensus 185 ~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 185 AKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 6789999999999999999873
No 360
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.25 E-value=1.9e-12 Score=122.37 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=63.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcC--cccccc---------------------------ccceeeEEEEEEEEeCCeeE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------VATLGVEVHPLVFHTNRGAI 273 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 273 (385)
..++++++|..++|||||+++++.. .+...+ ....|.|.......+....+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 4689999999999999999998853 232111 00123343333334445566
Q ss_pred EEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhh
Q psy125 274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313 (385)
Q Consensus 274 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 313 (385)
.+.||||||+++|......+++.+|++|+|||+++ .+|+
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe 123 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYE 123 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHH
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccc
Confidence 79999999999999888889999999999999999 5555
No 361
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.24 E-value=5e-12 Score=118.03 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=65.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcC-------ccccc-------cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTG-------EFEKK-------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG 288 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 288 (385)
..++++++|..++|||||+++++.. .|... .....|.|.......+......+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 3589999999999999999998753 11110 011234444444444555556789999999999988
Q ss_pred ccccccccCcEEEEEEeCCChhh
Q psy125 289 LRDGYYIQGQCAIIMFDVTSRIT 311 (385)
Q Consensus 289 ~~~~~~~~~~~~ilv~d~~~~~s 311 (385)
....+++.+|++|+|+|+++...
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~ 104 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPM 104 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSC
T ss_pred HHHhhHhhCCEEEEEEECCCCCC
Confidence 77888999999999999998543
No 362
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.23 E-value=1.1e-11 Score=111.35 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=76.1
Q ss_pred HHHhcCccccc-------cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCC-------
Q psy125 242 KRHLTGEFEKK-------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT------- 307 (385)
Q Consensus 242 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~------- 307 (385)
.|+....|... ..+|+|..... +.+ +.+.+.||||+||++++.+|..||++++|+|+|||++
T Consensus 133 ~Ri~~~~Y~PT~~Dilr~r~~TiGi~~~~--~~~--~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~ 208 (327)
T 3ohm_A 133 DRVADPSYLPTQQDVLRVRVPTTGIIEYP--FDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLV 208 (327)
T ss_dssp HHHHSTTCCCCHHHHTTCCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCS
T ss_pred HHHhccCCCccccchhcccCceeeEEEEE--EEe--eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccc
Confidence 45555555544 56777754333 233 4578999999999999999999999999999999765
Q ss_pred ---Chhhhhh----------------------------------------------------------------------
Q psy125 308 ---SRITYKN---------------------------------------------------------------------- 314 (385)
Q Consensus 308 ---~~~s~~~---------------------------------------------------------------------- 314 (385)
+..+|++
T Consensus 209 d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~ 288 (327)
T 3ohm_A 209 ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDS 288 (327)
T ss_dssp SCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTT
T ss_pred ccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccc
Confidence 5566655
Q ss_pred -----hheeccccCCCchHHHHHHHHHHhcCC
Q psy125 315 -----YYDISAKSNYNFEKPFLWLARKLIGDP 341 (385)
Q Consensus 315 -----~~e~Sak~~~~v~~~f~~l~~~i~~~~ 341 (385)
+++|||+++.||+++|..+++.|+++.
T Consensus 289 ~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 289 DKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999998764
No 363
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.22 E-value=3.7e-12 Score=119.35 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=68.2
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC--------ccccc-------cccceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTG--------EFEKK-------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 286 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 286 (385)
...++++++|..++|||||+++++.. .|... ...+.|.+.......+......+.||||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 35689999999999999999998752 22110 0123444544444455555667899999999999
Q ss_pred CcccccccccCcEEEEEEeCCChhhhh
Q psy125 287 GGLRDGYYIQGQCAIIMFDVTSRITYK 313 (385)
Q Consensus 287 ~~~~~~~~~~~~~~ilv~d~~~~~s~~ 313 (385)
......+++.+|++|+|+|++++...+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~q 115 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQ 115 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHH
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHH
Confidence 888888899999999999999865433
No 364
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.22 E-value=3.9e-11 Score=105.62 Aligned_cols=112 Identities=13% Similarity=-0.002 Sum_probs=67.6
Q ss_pred EEEEEEeCCCccccccchh------hhhccCcEEEEEEeCCChhhhhcHHHH---HHHHHHhcCCCCEEEEEeCCCCcch
Q psy125 58 IRFNVWDTAGQEKFGGLRD------GYYIQGQCAIIMFDVTSRITYKNVPNW---HRDLVRVCENIPIVLCGNKVDIKDR 128 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~~~~~------~~~~~~d~illV~d~~~~~~~~~~~~~---~~~l~~~~~~~~~ilv~nK~Dl~~~ 128 (385)
+.+.+|||||......... ..+.. +++++++|............. ..... ...+.|+++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccccc
Confidence 5789999999865322111 23355 788888887543222221111 11111 1136899999999998654
Q ss_pred hhhHHHHHH----------------------------HHhc--CCeEEEEcCCCCCChHHHHHHHHHHHhcCC
Q psy125 129 KVKAKSIVF----------------------------HRKK--NLQYYDISAKSNYNFEKPFLWLARKLIGDP 171 (385)
Q Consensus 129 ~~~~~~~~~----------------------------~~~~--~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~ 171 (385)
....+...+ .... ..+++++||+++.|+++++.+|.+.+...+
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 259 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCG 259 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcccc
Confidence 321111111 1222 237899999999999999999998875543
No 365
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.22 E-value=5.1e-11 Score=109.12 Aligned_cols=82 Identities=13% Similarity=-0.012 Sum_probs=53.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEE--EEeC-------------------CeeEEEEEEeCCCc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--FHTN-------------------RGAIRFNVWDTAGQ 68 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~--~~~~-------------------~~~~~~~i~Dt~g~ 68 (385)
++|+|+|.+|||||||+|+|.+... .....++.|..... .... .....+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~--~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA--LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT--TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5899999999999999999776431 11111122221111 1111 13467999999998
Q ss_pred ccccc----ch---hhhhccCcEEEEEEeCCC
Q psy125 69 EKFGG----LR---DGYYIQGQCAIIMFDVTS 93 (385)
Q Consensus 69 ~~~~~----~~---~~~~~~~d~illV~d~~~ 93 (385)
..... +. ...++++|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 75432 22 235689999999999985
No 366
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.22 E-value=4.3e-12 Score=113.78 Aligned_cols=121 Identities=18% Similarity=0.310 Sum_probs=59.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcC-cccccc--------ccceeeEEEEEEEEeCCeeEEEEEeeCCCc-------ccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTG-EFEKKY--------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQ-------EKF 286 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------~~~ 286 (385)
..++|+++|++|+|||||++++.+. .+...+ .++.+...........+....+++|||+|+ +++
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3589999999999999999996643 444332 122211111122222344568999999998 666
Q ss_pred Ccccc-------cccccC-------------cEEEEEEeCCChhhhhh--------------------------------
Q psy125 287 GGLRD-------GYYIQG-------------QCAIIMFDVTSRITYKN-------------------------------- 314 (385)
Q Consensus 287 ~~~~~-------~~~~~~-------------~~~ilv~d~~~~~s~~~-------------------------------- 314 (385)
..+.. .|++.. ++++++.+.+. .+|+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~ 175 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERER 175 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHH
Confidence 66665 454433 33333333222 11111
Q ss_pred ---------------hheeccccCCCchHHHHHHHHHHhcCCCccc
Q psy125 315 ---------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEF 345 (385)
Q Consensus 315 ---------------~~e~Sak~~~~v~~~f~~l~~~i~~~~~~~~ 345 (385)
|+++||++| ||+++|.++++.+....++..
T Consensus 176 ~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~av 220 (301)
T 2qnr_A 176 LKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPFSV 220 (301)
T ss_dssp HHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCceE
Confidence 899999999 999999999999987655443
No 367
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.20 E-value=5.9e-11 Score=101.98 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=83.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeE------------EEEEEeC-Ce------------------
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH------------PLVFHTN-RG------------------ 56 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~------------~~~~~~~-~~------------------ 56 (385)
+.++|+|+|.+|||||||+++|+...+.....++.+.+.. ......+ ..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999998876444333333332211 0111111 00
Q ss_pred -eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh--hhHH
Q psy125 57 -AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--VKAK 133 (385)
Q Consensus 57 -~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--~~~~ 133 (385)
...+.++|++|.-.. ...+-...+..+.++++........ .. ... -..|.++++||+|+.... ...+
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~----~~~~~iiv~NK~Dl~~~~~~~~~~ 186 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KH-PGI----MKTADLIVINKIDLADAVGADIKK 186 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH----HTTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hh-hhH----hhcCCEEEEeccccCchhHHHHHH
Confidence 113445555552100 0011112333455566432211110 00 111 146789999999986542 2233
Q ss_pred HHHHHHh--cCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 134 SIVFHRK--KNLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 134 ~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
...+... ...+++++||+++.|+++++..|.+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 187 MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 3334333 2568999999999999999999988764
No 368
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.20 E-value=3.2e-11 Score=110.74 Aligned_cols=111 Identities=17% Similarity=0.020 Sum_probs=75.4
Q ss_pred eE-EEEECCCCCCHHHHHHHHhcCccccccccceeeE--EEEEEEEeCCeeEEEEEeeCCCccc---------cCccccc
Q psy125 225 FK-CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAGQEK---------FGGLRDG 292 (385)
Q Consensus 225 ~~-i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~ 292 (385)
++ ++++|.+|||||||++++.+..+.. ....++| .....+.+++ ..+.+|||+|+.+ |.....
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~--~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~- 253 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKV--DTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS- 253 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccc--cCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-
Confidence 45 9999999999999999988665421 1222333 2334455555 4678999999732 222222
Q ss_pred ccccCcEEEEEEeCCChh--hhhh----------------------------------------------------hhee
Q psy125 293 YYIQGQCAIIMFDVTSRI--TYKN----------------------------------------------------YYDI 318 (385)
Q Consensus 293 ~~~~~~~~ilv~d~~~~~--s~~~----------------------------------------------------~~e~ 318 (385)
++..+|++++|+|++++. +++. +++|
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 578999999999999876 3321 1468
Q ss_pred ccccCCCchHHHHHHHHHHhcC
Q psy125 319 SAKSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 319 Sak~~~~v~~~f~~l~~~i~~~ 340 (385)
||++|.|++++|.+|.+.+...
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHhccc
Confidence 9999999999999998877554
No 369
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.18 E-value=6.1e-12 Score=124.09 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=86.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCCC--------cc------cccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy125 11 KCVLVGDGGTGKTTFVKRHLT--GEFEK--------KY------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL 74 (385)
Q Consensus 11 ~i~lvG~~g~GKSTLin~ll~--~~~~~--------~~------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~ 74 (385)
+|+|+|+.++|||||..+|+. +.... .+ ....|+|.........+++..++++||||+.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999999863 21110 01 112356666666777888899999999999999888
Q ss_pred hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125 75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 127 (385)
Q Consensus 75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~ 127 (385)
....++-+|++|+|+|+......+....|..... .++|.++++||+|...
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~---~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTRILFHALRK---MGIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH---HTCSCEECCEECCSSS
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH---cCCCeEEEEecccccc
Confidence 8889999999999999998765554444444332 3789999999999753
No 370
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.18 E-value=2.8e-11 Score=110.41 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=42.5
Q ss_pred ccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125 254 VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 309 (385)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 309 (385)
.+|+|.... .+.++ .+.+.||||+||++++.+|..||++++++|||||+++.
T Consensus 178 ~~T~Gi~~~--~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~ 229 (353)
T 1cip_A 178 VKTTGIVET--HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDY 229 (353)
T ss_dssp CCCCSEEEE--EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGG
T ss_pred CceeceEEE--EEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccc
Confidence 456665432 33333 67899999999999999999999999999999999994
No 371
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.18 E-value=9.4e-12 Score=110.88 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=79.4
Q ss_pred chhhhhccCcEEEEEEeCCChhhhhc-HHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHHhcCCeEEEE
Q psy125 74 LRDGYYIQGQCAIIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHRKKNLQYYDI 148 (385)
Q Consensus 74 ~~~~~~~~~d~illV~d~~~~~~~~~-~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~ 148 (385)
+.+..+.++|.+++|+|+.++....+ +..++... ...+++.++|+||+|+.+... ...+...+...+++++.+
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~--~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~ 156 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV--EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT 156 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH--HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH--HHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEE
Confidence 44557889999999999997754332 23333222 226889999999999976533 345566666678899999
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEE
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCV 228 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (385)
|+.++.|+++++..+ ..-.++
T Consensus 157 sa~~~~g~~~L~~~~-----------------------------------------------------------~G~~~~ 177 (307)
T 1t9h_A 157 SSKDQDSLADIIPHF-----------------------------------------------------------QDKTTV 177 (307)
T ss_dssp CHHHHTTCTTTGGGG-----------------------------------------------------------TTSEEE
T ss_pred ecCCCCCHHHHHhhc-----------------------------------------------------------CCCEEE
Confidence 998888765432210 012589
Q ss_pred EECCCCCCHHHHHHHHhc
Q psy125 229 LVGDGGTGKTTFVKRHLT 246 (385)
Q Consensus 229 ~~G~~~vgks~~~~~~~~ 246 (385)
++|++|||||||+|.+..
T Consensus 178 lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 178 FAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp EEESHHHHHHHHHHHHCC
T ss_pred EECCCCCCHHHHHHHhcc
Confidence 999999999999999764
No 372
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.17 E-value=1.2e-11 Score=116.80 Aligned_cols=88 Identities=20% Similarity=0.274 Sum_probs=61.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCc---cccc---------cccc-------------------eeeEEEEEEEEeCCe
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGE---FEKK---------YVAT-------------------LGVEVHPLVFHTNRG 271 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~---~~~~---------~~~~-------------------~~~~~~~~~~~~~~~ 271 (385)
..++++++|..++|||||+++++.+. +... ...+ .|.|.......+...
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 45899999999999999999987543 1100 0011 112221112223334
Q ss_pred eEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChh
Q psy125 272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI 310 (385)
Q Consensus 272 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 310 (385)
...+.||||||+++|......++..+|++|+|+|++++.
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~ 141 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV 141 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 567899999999999888888899999999999999853
No 373
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.17 E-value=1.9e-10 Score=115.01 Aligned_cols=114 Identities=21% Similarity=0.192 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC--------CC--Ccc------cccceeeeEEEEEEeCC-------eeEEEEEEeCC
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGE--------FE--KKY------VATLGVEVHPLVFHTNR-------GAIRFNVWDTA 66 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~--------~~--~~~------~~~~g~t~~~~~~~~~~-------~~~~~~i~Dt~ 66 (385)
-+|+|+|+.++|||||..+|+... .. ..+ ....|+|.........+ +++.++++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 479999999999999999987321 00 001 12234444333333322 36899999999
Q ss_pred CccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 126 (385)
Q Consensus 67 g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~ 126 (385)
|+.+|.......++-+|++|+|+|+......+...-|..... .++|.++++||+|..
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~---~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK---YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH---HTCCEEEEEECSSST
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH---cCCCeEEEEcccccc
Confidence 999998888889999999999999998766555444554433 489999999999974
No 374
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.17 E-value=2.1e-11 Score=106.28 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=47.7
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE 205 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~ 205 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...
T Consensus 143 ~~~~LSgGq~qRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~l~~ 194 (256)
T 1vpl_A 143 RVSTYSKGMVRKLLIARALMVNPRLAI-----LDEPTSGLDVLNAREVRKILKQASQ 194 (256)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCccccCHHHHHHHHHHHHHHHh
Confidence 355678999999999999999999999 9999999999999999999988753
No 375
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.17 E-value=3.5e-11 Score=109.31 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=48.6
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
.....+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 160 ~~~~LSGGqkQRVaIArAL~~~P~lLL-----lDEPTs~LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 160 YPSNLSGGQKQRVAIARALASNPKVLL-----CDQATSALDPATTRSILELLKDINRR 212 (366)
T ss_dssp CTTTSCHHHHHHHHHHHHTTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEE-----EECCCccCCHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999 99999999999999999999987654
No 376
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.16 E-value=2.9e-11 Score=106.44 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=64.0
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccc------
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI------ 295 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------ 295 (385)
...++|+++|.+|+||||++++++...+.. ..+..+++.......+...+..+.||||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR-VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC-CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc-cCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 356999999999999999999998766422 2233334443333333334557899999999988877666654
Q ss_pred ---cCcEEEEEEeCCChh
Q psy125 296 ---QGQCAIIMFDVTSRI 310 (385)
Q Consensus 296 ---~~~~~ilv~d~~~~~ 310 (385)
++|++|+|+|++...
T Consensus 113 ~~~~~~~il~V~~~d~~~ 130 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA 130 (262)
T ss_dssp TTCEECEEEEEEESSCSC
T ss_pred hcCCCCEEEEEEcCCCCC
Confidence 899999999997643
No 377
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.16 E-value=3.5e-11 Score=103.76 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=48.5
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 142 ~~~~LSgGq~QRv~iAral~~~p~lll-----lDEPts~LD~~~~~~i~~~l~~l~~~ 194 (235)
T 3tif_A 142 KPNQLSGGQQQRVAIARALANNPPIIL-----ADQPTWALDSKTGEKIMQLLKKLNEE 194 (235)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999 99999999999999999999887643
No 378
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.14 E-value=4.3e-11 Score=109.48 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=48.7
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
......+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 129 r~p~~LSGGqrQRVaiArAL~~~P~lLL-----LDEPts~LD~~~~~~l~~~l~~l~~~ 182 (381)
T 3rlf_A 129 RKPKALSGGQRQRVAIGRTLVAEPSVFL-----LDEPLSNLDAALRVQMRIEISRLHKR 182 (381)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CChhHCCHHHHHHHHHHHHHHcCCCEEE-----EECCCcCCCHHHHHHHHHHHHHHHHh
Confidence 3456778999999999999999999999 99999999999999999999887654
No 379
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.14 E-value=4e-11 Score=105.25 Aligned_cols=52 Identities=23% Similarity=0.182 Sum_probs=47.7
Q ss_pred CCCCCChHHHHHHHHHHHhc------CCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 150 AKSNYNFEKPFLWLARKLIG------DPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~------~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
..+.+|+++++..|++++.. +|++++ +|||++++|+..+..+.+.+++...+
T Consensus 139 ~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl-----lDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 139 YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF-----LDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE-----ECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhcccccCCCCCEEE-----EeCccccCCHHHHHHHHHHHHHHHHc
Confidence 45678999999999999999 999999 99999999999999999999887654
No 380
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.13 E-value=6.1e-11 Score=107.76 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=48.1
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 142 ~~~~LSGGq~QRvalArAL~~~P~lLL-----LDEP~s~LD~~~r~~l~~~l~~l~~~ 194 (355)
T 1z47_A 142 FPHELSGGQQQRVALARALAPRPQVLL-----FDEPFAAIDTQIRRELRTFVRQVHDE 194 (355)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 345688999999999999999999999 99999999999999999999887543
No 381
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.13 E-value=4.2e-11 Score=102.51 Aligned_cols=54 Identities=20% Similarity=0.155 Sum_probs=48.5
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
....+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 136 ~~~~~LSgGq~qrv~laral~~~p~lll-----LDEPt~~LD~~~~~~~~~~l~~l~~~ 189 (224)
T 2pcj_A 136 RKPYELSGGEQQRVAIARALANEPILLF-----ADEPTGNLDSANTKRVMDIFLKINEG 189 (224)
T ss_dssp CCGGGSCHHHHHHHHHHHHTTTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 3456788999999999999999999999 99999999999999999999887543
No 382
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.13 E-value=1.1e-11 Score=117.69 Aligned_cols=87 Identities=18% Similarity=0.271 Sum_probs=63.3
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcC--ccccc------------------c----c-----cceeeEEEEEEEEeCCeeE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEKK------------------Y----V-----ATLGVEVHPLVFHTNRGAI 273 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~~------------------~----~-----~~~~~~~~~~~~~~~~~~~ 273 (385)
..++++++|..++|||||+++++.. .+... + + ...|.|.......+.....
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 4689999999999999999998753 22110 0 0 0122332222223344556
Q ss_pred EEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125 274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 309 (385)
Q Consensus 274 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 309 (385)
.+.||||||+++|......++..+|++|||+|++++
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 799999999999988888899999999999999986
No 383
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.13 E-value=9.3e-11 Score=103.19 Aligned_cols=52 Identities=25% Similarity=0.178 Sum_probs=48.0
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
....+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++..
T Consensus 139 ~~~~~LSgGqkQRv~iAraL~~~P~lLl-----LDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 139 KPTHCLSFGQKKRVAIAGVLVMEPKVLI-----LDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp SBGGGSCHHHHHHHHHHHHHTTCCSEEE-----EECTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEE-----EECccccCCHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999 999999999999999999998876
No 384
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.12 E-value=1.5e-11 Score=120.04 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=47.3
Q ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCc--cccc---------------------------cccceeeEEEEEEEEeCCe
Q psy125 221 DMPSFKCVLVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YVATLGVEVHPLVFHTNRG 271 (385)
Q Consensus 221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 271 (385)
....++|+++|.+++|||||+++++... +... .....|+|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4467899999999999999999986321 0000 0012345555444444545
Q ss_pred eEEEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125 272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 309 (385)
Q Consensus 272 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 309 (385)
...+.||||||+++|......+++.+|++|||+|++++
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g 291 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQN 291 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEEC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 67889999999999998888899999999999999964
No 385
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.12 E-value=2.2e-11 Score=124.13 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=63.8
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCc-------ccc-------ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGE-------FEK-------KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 287 (385)
...++|+++|..++|||||+++++... +.. ....+.|.|.....+.++.....+.||||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999987531 100 112344555444444455556778999999999998
Q ss_pred cccccccccCcEEEEEEeCCChhhh
Q psy125 288 GLRDGYYIQGQCAIIMFDVTSRITY 312 (385)
Q Consensus 288 ~~~~~~~~~~~~~ilv~d~~~~~s~ 312 (385)
.....+++.+|++|+|+|++++...
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~ 398 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP 398 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH
Confidence 8878889999999999999986443
No 386
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.12 E-value=1.5e-10 Score=102.25 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=63.6
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc---------
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG--------- 292 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--------- 292 (385)
...++|+++|.+|+|||||+++++...+. .+.++.++++....+.+...++.+.||||||+..+..+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 34689999999999999999998866542 23344555555444555555678999999999887654432
Q ss_pred ccccCcEEEEEEeCCC
Q psy125 293 YYIQGQCAIIMFDVTS 308 (385)
Q Consensus 293 ~~~~~~~~ilv~d~~~ 308 (385)
+++++|++|+|||++.
T Consensus 116 ~~~~~d~il~v~~~d~ 131 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDA 131 (270)
T ss_dssp TTCEECEEEEEEESSC
T ss_pred hcCCCCEEEEEEeCCC
Confidence 2458999999999975
No 387
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.11 E-value=6.4e-11 Score=108.02 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=48.7
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
....+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 129 r~~~~LSGGq~QRvalArAL~~~P~lLL-----LDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (362)
T 2it1_A 129 RYPWQLSGGQQQRVAIARALVKEPEVLL-----LDEPLSNLDALLRLEVRAELKRLQKE 182 (362)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEE-----EECccccCCHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999999 99999999999999999999887543
No 388
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.11 E-value=3.4e-11 Score=108.55 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=52.2
Q ss_pred HHhcCccccc-------cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCC--------
Q psy125 243 RHLTGEFEKK-------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT-------- 307 (385)
Q Consensus 243 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~-------- 307 (385)
|+....|... +.+|+|...... ..+.+.+.||||+||++++.+|..||++++|+|+|||++
T Consensus 128 Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~----~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e 203 (340)
T 4fid_A 128 RIAMEDYVPTEEDLIHNRTKTTGIHEYDF----VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYE 203 (340)
T ss_dssp HHSSTTCCCCHHHHHHSCCCCCSCEEEEE----ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC-
T ss_pred HHhcccCCccccceeecccceeeeEEEEE----EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCcccccccc
Confidence 4444555444 566777544333 234678999999999999999999999999999999999
Q ss_pred --Chhhhhh
Q psy125 308 --SRITYKN 314 (385)
Q Consensus 308 --~~~s~~~ 314 (385)
+..+|++
T Consensus 204 ~~~~nr~~e 212 (340)
T 4fid_A 204 DGNTSRLTE 212 (340)
T ss_dssp -CCSBHHHH
T ss_pred ccccchHHH
Confidence 6777766
No 389
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.11 E-value=5.7e-11 Score=109.39 Aligned_cols=103 Identities=7% Similarity=0.030 Sum_probs=76.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 305 (385)
Q Consensus 226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 305 (385)
+++++|..++|||||+++++ ....|+...+ ..+......+.||||||+++|......+++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~----~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM----YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE----EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE----EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999976 2222332222 2334445568999999999997777778899999999999
Q ss_pred CCChhhhhh--------------------------------------------------hhe--ecccc---CCCchHHH
Q psy125 306 VTSRITYKN--------------------------------------------------YYD--ISAKS---NYNFEKPF 330 (385)
Q Consensus 306 ~~~~~s~~~--------------------------------------------------~~e--~Sak~---~~~v~~~f 330 (385)
++...-+. |++ +||++ |.||+++|
T Consensus 93 -~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~ 171 (370)
T 2elf_A 93 -PQGLDAHTGECIIALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELK 171 (370)
T ss_dssp -TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGSCHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHH
T ss_pred -CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCCCHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHH
Confidence 53211000 466 99999 99999999
Q ss_pred HHHHHHHhc
Q psy125 331 LWLARKLIG 339 (385)
Q Consensus 331 ~~l~~~i~~ 339 (385)
..|.+.+..
T Consensus 172 ~~l~~~~~~ 180 (370)
T 2elf_A 172 ARINEVAEK 180 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhccc
Confidence 999887653
No 390
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.11 E-value=3e-10 Score=103.08 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=74.6
Q ss_pred hhccCcEEEEEEeCCChhhh-hcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHHhcCCeEEEEcCCCC
Q psy125 78 YYIQGQCAIIMFDVTSRITY-KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKSN 153 (385)
Q Consensus 78 ~~~~~d~illV~d~~~~~~~-~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~ 153 (385)
.+.++|.+++|... .+... ..+..++..... .+++.++|+||+|+.+... ...+...+...+++++.+|+.++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 46789999988665 45322 223333322221 4788899999999976543 33445556667889999999999
Q ss_pred CChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCC
Q psy125 154 YNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDG 233 (385)
Q Consensus 154 ~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 233 (385)
.|++++...+ .+ -.++++|++
T Consensus 204 ~gl~~L~~~~----~G-------------------------------------------------------~~~~lvG~s 224 (358)
T 2rcn_A 204 DGLKPLEEAL----TG-------------------------------------------------------RISIFAGQS 224 (358)
T ss_dssp BTHHHHHHHH----TT-------------------------------------------------------SEEEEECCT
T ss_pred cCHHHHHHhc----CC-------------------------------------------------------CEEEEECCC
Confidence 9987655421 00 258999999
Q ss_pred CCCHHHHHHHHhcC
Q psy125 234 GTGKTTFVKRHLTG 247 (385)
Q Consensus 234 ~vgks~~~~~~~~~ 247 (385)
|||||||++.+.+.
T Consensus 225 G~GKSTLln~L~g~ 238 (358)
T 2rcn_A 225 GVGKSSLLNALLGL 238 (358)
T ss_dssp TSSHHHHHHHHHCC
T ss_pred CccHHHHHHHHhcc
Confidence 99999999997743
No 391
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.09 E-value=1.1e-10 Score=100.89 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=47.8
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE 205 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~ 205 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...
T Consensus 123 ~~~~LSgGqkqRv~lAral~~~p~lll-----LDEPts~LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 123 KPARLSGGERQRVALARALVIQPRLLL-----LDEPLSAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSSBE-----EESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999 9999999999999999999988754
No 392
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.09 E-value=5.5e-11 Score=113.14 Aligned_cols=88 Identities=17% Similarity=0.165 Sum_probs=50.4
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHhc--Cccccc----------------------cc-----cceeeEEEEEEEEeCCee
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHLT--GEFEKK----------------------YV-----ATLGVEVHPLVFHTNRGA 272 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~~--~~~~~~----------------------~~-----~~~~~~~~~~~~~~~~~~ 272 (385)
...++|+++|..++|||||+++++. +.+... .+ ...|.|.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999863 222110 00 011222222211222235
Q ss_pred EEEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125 273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 309 (385)
Q Consensus 273 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 309 (385)
..+.||||||+++|......+++.+|++|||+|+++.
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence 6789999999999998888899999999999999997
No 393
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.09 E-value=1.1e-10 Score=102.15 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=48.7
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
..+.+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 149 ~~~~~LSgGqkQrv~iAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~l~~~ 202 (257)
T 1g6h_A 149 RKAGELSGGQMKLVEIGRALMTNPKMIV-----MDEPIAGVAPGLAHDIFNHVLELKAK 202 (257)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCchhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCccCCCHHHHHHHHHHHHHHHHC
Confidence 3456788999999999999999999999 99999999999999999999887543
No 394
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.08 E-value=2.5e-10 Score=99.85 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=48.1
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 156 ~~~~LSgGqkQRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~~~~~l~~l~~~ 208 (263)
T 2olj_A 156 YPDSLSGGQAQRVAIARALAMEPKIML-----FDEPTSALDPEMVGEVLSVMKQLANE 208 (263)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHHHHHHCCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 355688999999999999999999999 99999999999999999999887543
No 395
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.08 E-value=6e-11 Score=107.76 Aligned_cols=53 Identities=26% Similarity=0.261 Sum_probs=47.4
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 135 ~~~~LSGGq~QRValArAL~~~P~lLL-----LDEPts~LD~~~r~~l~~~l~~~~~~ 187 (359)
T 3fvq_A 135 YPHELSGGQQQRAALARALAPDPELIL-----LDEPFSALDEQLRRQIREDMIAALRA 187 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 456678999999999999999999999 99999999999999999877776543
No 396
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.07 E-value=1.9e-10 Score=97.30 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=48.1
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE 205 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~ 205 (385)
....+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...
T Consensus 129 ~~~~~LSgGqkqrv~laraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~~~~ 181 (214)
T 1sgw_A 129 KKLGELSQGTIRRVQLASTLLVNAEIYV-----LDDPVVAIDEDSKHKVLKSILEILK 181 (214)
T ss_dssp SBGGGSCHHHHHHHHHHHHTTSCCSEEE-----EESTTTTSCTTTHHHHHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEE-----EECCCcCCCHHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999999 9999999999999999999988653
No 397
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.07 E-value=7.7e-11 Score=107.45 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=38.3
Q ss_pred eeEEEEEeeCCCccccCcccccccccCcEEEEEEeCC----------Chhhhhh
Q psy125 271 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT----------SRITYKN 314 (385)
Q Consensus 271 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~ 314 (385)
..+.+.||||+||++|+.++..||++++++|+|||++ +..+|++
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~ 234 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMME 234 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHH
Confidence 5788999999999999999999999999999999998 6677765
No 398
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.07 E-value=1.7e-10 Score=105.65 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=35.3
Q ss_pred ccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCCC
Q psy125 254 VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS 308 (385)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 308 (385)
.+|+|.... .+.++ .+.+.||||+||+.++..|..||++++++|||||+++
T Consensus 186 ~~T~Gi~~~--~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 186 RPTKGIHEY--DFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp CCCSSEEEE--EEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTC
T ss_pred CCccceEEE--EeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECcc
Confidence 356665543 33333 5789999999999999999999999999999999999
No 399
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.07 E-value=1.3e-10 Score=105.81 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=48.2
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 130 ~~~~LSgGq~QRvalArAL~~~P~lLL-----LDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (359)
T 2yyz_A 130 KPTQLSGGQQQRVALARALVKQPKVLL-----FDEPLSNLDANLRMIMRAEIKHLQQE 182 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EECCcccCCHHHHHHHHHHHHHHHHh
Confidence 345688999999999999999999999 99999999999999999999887543
No 400
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.07 E-value=9.6e-11 Score=107.45 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=48.1
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 136 ~~~~LSGGq~QRvalArAL~~~P~lLL-----LDEP~s~LD~~~r~~l~~~l~~l~~~ 188 (372)
T 1g29_1 136 KPRELSGGQRQRVALGRAIVRKPQVFL-----MDEPLSNLDAKLRVRMRAELKKLQRQ 188 (372)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTCCSEEE-----EECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEE-----ECCCCccCCHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999 99999999999999999999887543
No 401
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.06 E-value=6.5e-10 Score=101.07 Aligned_cols=103 Identities=9% Similarity=0.056 Sum_probs=61.7
Q ss_pred eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc-hhh-hHH
Q psy125 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD-RKV-KAK 133 (385)
Q Consensus 56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~-~~~-~~~ 133 (385)
.+..+.++||+|.... .......+|.+++|+|.......+.+... +. ..+.++++||+|+.. ... ...
T Consensus 146 ~~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 146 AGFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IF----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TTCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HH----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh----ccccEEEEEchhccCchhHHHHH
Confidence 3567899999997532 12345789999999997643221111011 11 224567779999643 211 111
Q ss_pred HHHHHH----hc------CCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125 134 SIVFHR----KK------NLQYYDISAKSNYNFEKPFLWLARKLI 168 (385)
Q Consensus 134 ~~~~~~----~~------~~~~~~~Sa~~~~gi~~l~~~i~~~l~ 168 (385)
...+.. .. ..+++.+|+.++.|+++++..|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111211 11 357889999999999999999988653
No 402
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.05 E-value=1.7e-10 Score=105.61 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=48.4
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 138 ~~~~LSGGq~QRvalArAL~~~P~lLL-----LDEP~s~LD~~~r~~l~~~l~~l~~~ 190 (372)
T 1v43_A 138 YPAQLSGGQRQRVAVARAIVVEPDVLL-----MDEPLSNLDAKLRVAMRAEIKKLQQK 190 (372)
T ss_dssp CTTTCCSSCHHHHHHHHHHTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEE-----EcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999 99999999999999999999887543
No 403
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.02 E-value=3.2e-10 Score=98.70 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=42.4
Q ss_pred CCC-CCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 150 AKS-NYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 150 a~~-~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
..+ .+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++..
T Consensus 140 ~~~~LSgGqkQrv~iAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~l~ 190 (250)
T 2d2e_A 140 LNEGFSGGEKKRNEILQLLVLEPTYAV-----LDETDSGLDIDALKVVARGVNAMR 190 (250)
T ss_dssp TTCC----HHHHHHHHHHHHHCCSEEE-----EECGGGTTCHHHHHHHHHHHHHHC
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCEEE-----EeCCCcCCCHHHHHHHHHHHHHHH
Confidence 445 77999999999999999999999 999999999999999999988763
No 404
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.01 E-value=2e-10 Score=104.31 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=48.3
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 124 ~~~~LSgGq~QRvalAraL~~~P~lLL-----LDEP~s~LD~~~~~~l~~~l~~l~~~ 176 (348)
T 3d31_A 124 NPLTLSGGEQQRVALARALVTNPKILL-----LDEPLSALDPRTQENAREMLSVLHKK 176 (348)
T ss_dssp CGGGSCHHHHHHHHHHHHTTSCCSEEE-----EESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EECccccCCHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999 99999999999999999999887554
No 405
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.01 E-value=3.4e-10 Score=97.90 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=47.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE 205 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~ 205 (385)
..+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...
T Consensus 137 ~~~LSgGq~qrv~lAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~~~~ 187 (240)
T 1ji0_A 137 GGTLSGGEQQMLAIGRALMSRPKLLM-----MDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp SSSSCHHHHHHHHHHHHHTTCCSEEE-----EECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEE-----EcCCcccCCHHHHHHHHHHHHHHHH
Confidence 56678999999999999999999999 9999999999999999999988754
No 406
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.01 E-value=1.9e-10 Score=104.74 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=48.2
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 137 ~~~~LSGGq~QRvalAraL~~~P~lLL-----LDEP~s~LD~~~r~~l~~~l~~l~~~ 189 (353)
T 1oxx_K 137 FPRELSGAQQQRVALARALVKDPSLLL-----LDEPFSNLDARMRDSARALVKEVQSR 189 (353)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCGGGHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEE-----EECCcccCCHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999 99999999999999999999887543
No 407
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.00 E-value=3.9e-10 Score=103.98 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=46.4
Q ss_pred cceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCCC----------hhhhhh
Q psy125 255 ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS----------RITYKN 314 (385)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~ 314 (385)
+|+|.+.. .+.++ .+.+.||||+||++|+.+|..||++++++|||||+++ +.+|++
T Consensus 203 ~TiGi~~~--~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e 268 (402)
T 1azs_C 203 LTSGIFET--KFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQE 268 (402)
T ss_dssp CCCSEEEE--EEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHH
T ss_pred ceeeeEEE--EeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHH
Confidence 45565542 33444 4789999999999999999999999999999999999 777776
No 408
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.00 E-value=4.4e-11 Score=107.28 Aligned_cols=92 Identities=15% Similarity=0.067 Sum_probs=76.2
Q ss_pred HHHHHHhcCccc-cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChh-hhhh--
Q psy125 239 TFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKN-- 314 (385)
Q Consensus 239 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~-- 314 (385)
+++.+|+.+.|. ..+.+|+|..+. ..+..++ .+.|||| +++|+.+++.|++++|++|+|||++++. +|+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577888888998 889999995544 3332222 5789999 9999999999999999999999999987 5653
Q ss_pred -------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125 315 -------------------------------------------YYDISAKSNYNFEKPFLWLARK 336 (385)
Q Consensus 315 -------------------------------------------~~e~Sak~~~~v~~~f~~l~~~ 336 (385)
|++|||++|.||+++|..+..+
T Consensus 106 ~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 106 KFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp HHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred HHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 5689999999999999987654
No 409
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.00 E-value=3.7e-10 Score=98.92 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=48.7
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
....+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 149 ~~~~~LSgGq~qRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~~~~~l~~l~~~ 202 (262)
T 1b0u_A 149 KYPVHLSGGQQQRVSIARALAMEPDVLL-----FDEPTSALDPELVGEVLRIMQQLAEE 202 (262)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEE-----EeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 3456788999999999999999999999 99999999999999999999887543
No 410
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.99 E-value=3.2e-10 Score=104.17 Aligned_cols=88 Identities=17% Similarity=0.005 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC--Ce---------------eEEEEEEeCCCccc
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN--RG---------------AIRFNVWDTAGQEK 70 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~--~~---------------~~~~~i~Dt~g~~~ 70 (385)
+.++|+|+|.+|||||||+|+|.+... ...+.+++|.......+. .. ...+.+|||||+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 457999999999999999999776543 333444444443332221 11 23589999999875
Q ss_pred ccc-------chhhhhccCcEEEEEEeCCChhhh
Q psy125 71 FGG-------LRDGYYIQGQCAIIMFDVTSRITY 97 (385)
Q Consensus 71 ~~~-------~~~~~~~~~d~illV~d~~~~~~~ 97 (385)
... ....+++++|++++|+|+.+...+
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC------
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 443 345667899999999999865443
No 411
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=5.6e-10 Score=103.87 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=54.9
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccc-c-------ccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC-------
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-Y-------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG------- 287 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------- 287 (385)
-.++|+++|++|+|||||++.+++..+... + .++.+.......+...+....+++|||+|+..+.
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 458999999999999999999886655211 1 1222222212222223344578999999986542
Q ss_pred c------------------ccccccccCcEEEEEEeCCCh-hhhhh----------------------------------
Q psy125 288 G------------------LRDGYYIQGQCAIIMFDVTSR-ITYKN---------------------------------- 314 (385)
Q Consensus 288 ~------------------~~~~~~~~~~~~ilv~d~~~~-~s~~~---------------------------------- 314 (385)
. +...+++++++.+++|+++.- .+|..
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k 189 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFK 189 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHH
Confidence 1 223466788877777777653 33332
Q ss_pred -------------hheeccccCCCchHHHHHHHHHHhc
Q psy125 315 -------------YYDISAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 315 -------------~~e~Sak~~~~v~~~f~~l~~~i~~ 339 (385)
|+++||+++.|++++|..+...++-
T Consensus 190 ~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 190 KQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp HHHHHHHHHHTCCCCCCC-----------------CCE
T ss_pred HHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence 7999999999999999988886543
No 412
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.98 E-value=2e-10 Score=110.58 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=62.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC--ccc------------cc------cccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTG--EFE------------KK------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~--~~~------------~~------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 283 (385)
..+++++|.+++|||||+++++.. .+. .. ..++.|.+.......+....+.+.||||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 579999999999999999998852 110 00 0112333333333334445678999999999
Q ss_pred cccCcccccccccCcEEEEEEeCCChhh
Q psy125 284 EKFGGLRDGYYIQGQCAIIMFDVTSRIT 311 (385)
Q Consensus 284 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s 311 (385)
..|......+++.+|++|+|+|++++..
T Consensus 93 ~df~~~~~~~l~~aD~~IlVvDa~~g~~ 120 (529)
T 2h5e_A 93 EDFSEDTYRTLTAVDCCLMVIDAAKGVE 120 (529)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred hhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence 9999888889999999999999998644
No 413
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.98 E-value=1.2e-09 Score=95.02 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=48.3
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 125 ~~~~LSgGq~qrv~lAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~l~~~ 177 (253)
T 2nq2_C 125 EFTSLSGGQRQLILIARAIASECKLIL-----LDEPTSALDLANQDIVLSLLIDLAQS 177 (253)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTTCSEEE-----ESSSSTTSCHHHHHHHHHHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 356788999999999999999999999 99999999999999999999887543
No 414
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.97 E-value=3e-10 Score=99.33 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=46.2
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++.
T Consensus 125 ~~~~LSgGqkqRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~L~~~ 174 (263)
T 2pjz_A 125 KLYKLSAGQSVLVRTSLALASQPEIVG-----LDEPFENVDAARRHVISRYIKEY 174 (263)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCSEEE-----EECTTTTCCHHHHHHHHHHHHHS
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEE-----EECCccccCHHHHHHHHHHHHHh
Confidence 356788999999999999999999999 99999999999999999988765
No 415
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.97 E-value=5.1e-11 Score=106.31 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=46.3
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
.....+|+++++..|++++..+|++++ +|||++++|+.....+.+.+++..
T Consensus 187 ~g~~LSGGqrQRvaiARAL~~~p~iLl-----LDEPts~LD~~~~~~i~~~l~~l~ 237 (306)
T 3nh6_A 187 RGLKLSGGEKQRVAIARTILKAPGIIL-----LDEATSALDTSNERAIQASLAKVC 237 (306)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEE-----EECCSSCCCHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHhCCCEEE-----EECCcccCCHHHHHHHHHHHHHHc
Confidence 345678999999999999999999999 999999999999999999888753
No 416
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.96 E-value=3.1e-10 Score=99.74 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=48.6
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
....+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 134 ~~~~~LSgGq~qRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~l~~~ 187 (266)
T 2yz2_A 134 RVPFFLSGGEKRRVAIASVIVHEPDILI-----LDEPLVGLDREGKTDLLRIVEKWKTL 187 (266)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEE-----EcCccccCCHHHHHHHHHHHHHHHHc
Confidence 3456788999999999999999999999 99999999999999999999887543
No 417
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.96 E-value=2.8e-11 Score=106.90 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=48.8
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
....+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 157 ~~~~~LSgGqkqRv~lAraL~~~p~lLl-----LDEPts~LD~~~~~~l~~~l~~l~~~ 210 (279)
T 2ihy_A 157 QYIGYLSTGEKQRVMIARALMGQPQVLI-----LDEPAAGLDFIARESLLSILDSLSDS 210 (279)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHHHhCCCCEEE-----EeCCccccCHHHHHHHHHHHHHHHHC
Confidence 3456788999999999999999999999 99999999999999999999887554
No 418
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.94 E-value=4.3e-10 Score=97.58 Aligned_cols=52 Identities=21% Similarity=0.110 Sum_probs=47.6
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCC-------cccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPN-------LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE 205 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~-------~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~ 205 (385)
...+.+|+++++..|++++..+|+ +++ +|||++++|+..+..+.+.+++...
T Consensus 123 ~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll-----LDEPts~LD~~~~~~l~~~l~~l~~ 181 (249)
T 2qi9_C 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL-----LDEPMNSLDVAQQSALDKILSALSQ 181 (249)
T ss_dssp BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE-----ESSTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE-----EECCcccCCHHHHHHHHHHHHHHHh
Confidence 356678999999999999999999 999 9999999999999999999988754
No 419
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.93 E-value=8.4e-10 Score=109.36 Aligned_cols=91 Identities=21% Similarity=0.190 Sum_probs=66.1
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccc-------------ccccc---ceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFE-------------KKYVA---TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 286 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 286 (385)
...+++++|.+|+|||||+++++..... ..+.+ ..|.++......+....+.++||||||+..|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3578999999999999999998832221 00000 1133444444444445678999999999999
Q ss_pred CcccccccccCcEEEEEEeCCChhhhh
Q psy125 287 GGLRDGYYIQGQCAIIMFDVTSRITYK 313 (385)
Q Consensus 287 ~~~~~~~~~~~~~~ilv~d~~~~~s~~ 313 (385)
......+++.+|++++|+|+++....+
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~q 114 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVG 114 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchh
Confidence 888888999999999999998755443
No 420
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.92 E-value=9.5e-10 Score=96.59 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=44.1
Q ss_pred CCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 152 SNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++.
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLl-----LDEPts~LD~~~~~~l~~~l~~l 210 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCI-----LDESDSGLDIDALKVVADGVNSL 210 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEE-----EESTTTTCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEE-----EeCCCCCCCHHHHHHHHHHHHHH
Confidence 488999999999999999999999 99999999999999999988764
No 421
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.91 E-value=3.5e-10 Score=104.23 Aligned_cols=113 Identities=13% Similarity=0.249 Sum_probs=75.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCcccccccccee---eE-----------------------------------------
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG---VE----------------------------------------- 260 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~---~~----------------------------------------- 260 (385)
.+|+++|.+|+||||+++++++..|......+.. +.
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 4899999999999999999987666322211110 00
Q ss_pred --------EEEEEEEe-CCeeEEEEEeeCCCcccc-------------CcccccccccCcEEEEEEeCCChhhhhh----
Q psy125 261 --------VHPLVFHT-NRGAIRFNVWDTAGQEKF-------------GGLRDGYYIQGQCAIIMFDVTSRITYKN---- 314 (385)
Q Consensus 261 --------~~~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~---- 314 (385)
.....+.+ ......+.||||||+.++ ..+...|++++|++|+|+|.++......
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~ 194 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHH
Confidence 00001111 111335789999999876 4456678999999999998865433311
Q ss_pred ------------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125 315 ------------------------------------------YYDISAKSNYNFEKPFLWLARKL 337 (385)
Q Consensus 315 ------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i 337 (385)
|+++|++++.++++.+..+....
T Consensus 195 l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 195 ISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp HHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred HHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence 88999999999988776655443
No 422
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.90 E-value=4.5e-10 Score=103.18 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=24.4
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFE 250 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~ 250 (385)
...+|+++|.+||||||+++++++..+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3479999999999999999998877663
No 423
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.90 E-value=1.3e-09 Score=94.63 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=46.1
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
..+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++.
T Consensus 143 ~~~LSgGq~qRv~iAraL~~~p~lll-----LDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIARALVNNPKILI-----FDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEE-----ECCCCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999 99999999999999999999876
No 424
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.88 E-value=1.3e-09 Score=94.40 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=46.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
..+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++..
T Consensus 137 ~~~LSgGq~qrv~lAral~~~p~lll-----LDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 137 GVKISGGQRQRLAIARAFLRNPKILM-----LDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEE-----EECCSCSSCSSSCCHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCEEE-----EECCcccCCHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999 999999999999999999998764
No 425
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.88 E-value=2.1e-09 Score=98.68 Aligned_cols=90 Identities=16% Similarity=-0.010 Sum_probs=48.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEE--EEEEEEeCCe---------------eEEEEEeeCCCccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV--HPLVFHTNRG---------------AIRFNVWDTAGQEK 285 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 285 (385)
..++++++|.+|||||||++++....+. ....+++|. ....+.+.+. ...+.+|||||+.+
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~--~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQAS--AENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc--ccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 4578999999999999999998866542 222222222 1222233321 23489999999987
Q ss_pred cCc-------ccccccccCcEEEEEEeCCChhhhhh
Q psy125 286 FGG-------LRDGYYIQGQCAIIMFDVTSRITYKN 314 (385)
Q Consensus 286 ~~~-------~~~~~~~~~~~~ilv~d~~~~~s~~~ 314 (385)
+.+ ....+++++|++++|+|+++..++..
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 554 23357899999999999998777643
No 426
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.87 E-value=4e-10 Score=96.76 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=30.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEE
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 261 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~ 261 (385)
...+++++|.+||||||++++++...+...+.++++.++
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~ 75 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDV 75 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEET
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCC
Confidence 357999999999999999999987766555556665554
No 427
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.86 E-value=7.4e-10 Score=97.45 Aligned_cols=52 Identities=25% Similarity=0.227 Sum_probs=47.1
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
....+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++..
T Consensus 152 ~~~~~LSgGq~QRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 152 ETGNQLSGGQRQAVALARALIRKPRLLI-----LDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp GGGTTSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHCT
T ss_pred CCcCCCCHHHHHHHHHHHHHhcCCCEEE-----EECCccCCCHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999 999999999999999999888753
No 428
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.86 E-value=6.3e-09 Score=96.74 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=77.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccc-cccc-cceeeEEEEEEEEeCCeeEEEEEeeCCCccc----cCcccccc---cc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFE-KKYV-ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK----FGGLRDGY---YI 295 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~---~~ 295 (385)
-.++++|.+|+|||||++.+...... ..+. .|...+ .-.+..++ ...+.+|||||+.. +..+...+ ..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 35899999999999999997754221 1111 111111 11233332 34578999999743 22333333 34
Q ss_pred cCcEEEEEEeCCChhhhhh------------------------------------------------hheeccccCCCch
Q psy125 296 QGQCAIIMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFE 327 (385)
Q Consensus 296 ~~~~~ilv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~ 327 (385)
.++.++.|+|++ +.++.+ ++++||+++.||+
T Consensus 235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 799999999998 444433 6889999999999
Q ss_pred HHHHHHHHHHhcCCC
Q psy125 328 KPFLWLARKLIGDPN 342 (385)
Q Consensus 328 ~~f~~l~~~i~~~~~ 342 (385)
++|.+|++.+...+.
T Consensus 314 eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 314 ALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999977554
No 429
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.85 E-value=4.5e-09 Score=95.00 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.9
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCcc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEF 249 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~ 249 (385)
...+|+++|.+|+||||+++++++..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 457899999999999999999987765
No 430
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.84 E-value=3e-09 Score=90.85 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=70.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEE------------EEEEEEeCC------------------eeE
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV------------HPLVFHTNR------------------GAI 273 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~------------------~~~ 273 (385)
..+++++|.+||||||++++++...+......++..+. ....+.++. ...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 46899999999999999999875422111111111110 001111221 234
Q ss_pred EEEEeeCCCccccCccccc-ccccCcEEEEEEeCCChhhhhh--------------------------------------
Q psy125 274 RFNVWDTAGQEKFGGLRDG-YYIQGQCAIIMFDVTSRITYKN-------------------------------------- 314 (385)
Q Consensus 274 ~l~i~Dt~G~~~~~~~~~~-~~~~~~~~ilv~d~~~~~s~~~-------------------------------------- 314 (385)
.+.+|||+|+- ..+. +...++++++|+|+++......
T Consensus 110 d~iiidt~G~~----~~~~~~~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 185 (221)
T 2wsm_A 110 DLLLIENVGNL----ICPVDFDLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLIN 185 (221)
T ss_dssp SEEEEEEEEBS----SGGGGCCCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHC
T ss_pred CEEEEeCCCCC----CCCchhccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhC
Confidence 67899999961 1122 2246788999999876432110
Q ss_pred ----hheeccccCCCchHHHHHHHHHHhcC
Q psy125 315 ----YYDISAKSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 315 ----~~e~Sak~~~~v~~~f~~l~~~i~~~ 340 (385)
++++||++|.|++++|.+|.+.+...
T Consensus 186 ~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 186 PRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp TTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999999999987553
No 431
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.84 E-value=3.7e-09 Score=105.25 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=31.8
Q ss_pred EEEEeeCCCccc---cCcccccccccCcEEEEEEeCCChhhhhh
Q psy125 274 RFNVWDTAGQEK---FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314 (385)
Q Consensus 274 ~l~i~Dt~G~~~---~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 314 (385)
.+.||||||... .......|++.+|++|+|+|++++.++.+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e 218 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGE 218 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHH
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhH
Confidence 478999999765 33445568899999999999987765544
No 432
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.82 E-value=4.1e-09 Score=107.06 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=67.7
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCc------------ccc------ccccceeeEEEEEEEE------------eCCee
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGE------------FEK------KYVATLGVEVHPLVFH------------TNRGA 272 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~------------~~~------~~~~~~~~~~~~~~~~------------~~~~~ 272 (385)
...+|+++|..++|||||+++++... +.. ....|+........+. .++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 35799999999999999999988531 100 0011222222222222 23457
Q ss_pred EEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh
Q psy125 273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314 (385)
Q Consensus 273 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 314 (385)
+.++||||||+.+|...+..+++.+|++|+|||++++.+++.
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt 139 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQT 139 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHH
Confidence 889999999999999999999999999999999999988877
No 433
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=6.5e-09 Score=96.44 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=46.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEE----EEEEE-------------------EeCC-eeEEEEEeeC
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVF-------------------HTNR-GAIRFNVWDT 280 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------------------~~~~-~~~~l~i~Dt 280 (385)
++|+++|.+|||||||+|+++.... .....+++|. ....+ .+++ ..+.+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~--~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV--EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 4899999999999999999886552 1222222222 11111 1122 2467999999
Q ss_pred CCccc----cCcccc---cccccCcEEEEEEeCCCh
Q psy125 281 AGQEK----FGGLRD---GYYIQGQCAIIMFDVTSR 309 (385)
Q Consensus 281 ~G~~~----~~~~~~---~~~~~~~~~ilv~d~~~~ 309 (385)
||+.. +..+.. .+++++|++++|+|+++.
T Consensus 79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 99864 233333 357999999999999986
No 434
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.79 E-value=4.1e-09 Score=90.83 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=43.5
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHH
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLK 201 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~ 201 (385)
.....+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+.
T Consensus 124 ~~~~LSgGqkqRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 124 KGVNLSGGQKQRVSLARAVYSNADIYL-----FDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEE-----EESTTTTSCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEE-----EeCcccccCHHHHHHHHHHHH
Confidence 355678999999999999999999999 999999999999998888764
No 435
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.77 E-value=5.1e-09 Score=95.21 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=55.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCcccc-cc-ccceeeEEEEEEEEeCCe---------------eEEEEEeeCCCccccC
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFEK-KY-VATLGVEVHPLVFHTNRG---------------AIRFNVWDTAGQEKFG 287 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~ 287 (385)
++++++|.+|||||||++++....+.. .+ ..|++.+... +.+.+. ...+.+|||||+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~--v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV--VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE--EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEE--EecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 689999999999999999988765321 11 1122222221 233332 1468999999998763
Q ss_pred ----ccccc---ccccCcEEEEEEeCCC
Q psy125 288 ----GLRDG---YYIQGQCAIIMFDVTS 308 (385)
Q Consensus 288 ----~~~~~---~~~~~~~~ilv~d~~~ 308 (385)
.+... +++.+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 34333 4799999999999997
No 436
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.76 E-value=3.4e-09 Score=103.76 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=45.2
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
..+.+|+++++..|++++..+|++++ +|||++++|+.....+.+.+++.
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~ill-----lDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLI-----LDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEE-----EECccccCCHHHHHHHHHHHHHH
Confidence 45677999999999999999999999 99999999999999999988765
No 437
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.74 E-value=6.8e-10 Score=97.11 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=45.6
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
..+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++.
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVI-----FDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEE-----EECCCCTTCHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEE-----EECccccCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999 99999999999999999988875
No 438
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.73 E-value=6.9e-10 Score=102.22 Aligned_cols=47 Identities=26% Similarity=0.339 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 152 SNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
..+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++.
T Consensus 155 ~LSGGqrQRvalARAL~~~P~lLL-----LDEPts~LD~~~~~~l~~~l~~~ 201 (390)
T 3gd7_A 155 VLSHGHKQLMCLARSVLSKAKILL-----LDEPSAHLDPVTYQIIRRTLKQA 201 (390)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEE-----EESHHHHSCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEE-----EeCCccCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999 99999999999999999888753
No 439
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.71 E-value=2e-08 Score=92.40 Aligned_cols=125 Identities=10% Similarity=0.050 Sum_probs=73.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCC-----CCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccch--------
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGE-----FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR-------- 75 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~-----~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~-------- 75 (385)
..+|+++|.+|+|||||+|+|++.. ......+.+|+|+....+....+ +.++||||........
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 3589999999999999999987752 23345677888888877766554 7899999975432111
Q ss_pred hhh--hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHH
Q psy125 76 DGY--YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 139 (385)
Q Consensus 76 ~~~--~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~ 139 (385)
..+ ....+..+++++.........+.. +..+ ...+.|+++++||.|...........+++.
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l--~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~ 299 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYV--SGGRRAFTCHFSNRLTIHRTKLEKADELYK 299 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEE--ESSSEEEEEEECTTSCEEEEEHHHHHHHHH
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE-EEEe--cCCCceEEEEecCccccccccHHHHHHHHH
Confidence 111 245666777776632211111000 0011 113678999999999876544444443333
No 440
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.70 E-value=2.3e-08 Score=91.79 Aligned_cols=65 Identities=8% Similarity=-0.026 Sum_probs=49.8
Q ss_pred eEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh-------------------------------------
Q psy125 272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------------- 314 (385)
Q Consensus 272 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~------------------------------------- 314 (385)
++.+.||||||... .....+..+|++|+|+|.+....++.
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~ 247 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIR 247 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHh
Confidence 45688999999532 22334589999999999876554433
Q ss_pred ------------hheeccccCCCchHHHHHHHHHHhc
Q psy125 315 ------------YYDISAKSNYNFEKPFLWLARKLIG 339 (385)
Q Consensus 315 ------------~~e~Sak~~~~v~~~f~~l~~~i~~ 339 (385)
+++|||++|.||+++|.+|.+.+..
T Consensus 248 ~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 248 LIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred hccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999998754
No 441
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.70 E-value=2e-08 Score=92.42 Aligned_cols=118 Identities=12% Similarity=0.058 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC----CCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hh
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTG----EFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RD 76 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~----~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~ 76 (385)
..+|+++|.+|+|||||+|+|++. .......+.+|+|+....+....+ +.++||||....... ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 357999999999999999998764 123445677788888777665543 789999997533211 11
Q ss_pred hhh--ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH
Q psy125 77 GYY--IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA 132 (385)
Q Consensus 77 ~~~--~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~ 132 (385)
.++ ...+.++++++.........+.. +..+ ...+.|+++++||.|........
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l--~~~~~~~~~v~~k~d~~~~~~~~ 293 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR-LDYI--KGGRRSFVCYMANELTVHRTKLE 293 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-EEEE--ESSSEEEEEEECTTSCEEEEEGG
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE-EEEc--cCCCceEEEEecCCcccccccHH
Confidence 222 56788888887642211111000 0011 11467899999999986544433
No 442
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.69 E-value=2e-08 Score=86.04 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=41.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHh
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQD 199 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~ 199 (385)
..+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.
T Consensus 128 ~~~LSgGqkqrv~lAral~~~p~lll-----LDEPts~LD~~~~~~i~~~ 172 (229)
T 2pze_A 128 GITLSGGQRARISLARAVYKDADLYL-----LDSPFGYLDVLTEKEIFES 172 (229)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEE-----EESTTTTSCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEE-----EECcccCCCHHHHHHHHHH
Confidence 35678999999999999999999999 9999999999999888774
No 443
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.67 E-value=8.7e-09 Score=102.50 Aligned_cols=92 Identities=21% Similarity=0.166 Sum_probs=64.2
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcC--cccc--cccc------------ceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEK--KYVA------------TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 286 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 286 (385)
...+|+++|..|+|||||+++++.. .+.. .... ..+.+.......+....+.+.||||||+..|
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 3579999999999999999998832 1110 0000 1122222222233334577999999999999
Q ss_pred CcccccccccCcEEEEEEeCCChhhhhh
Q psy125 287 GGLRDGYYIQGQCAIIMFDVTSRITYKN 314 (385)
Q Consensus 287 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 314 (385)
...+..+++.+|++|+|+|+++..+++.
T Consensus 91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t 118 (691)
T 1dar_A 91 TIEVERSMRVLDGAIVVFDSSQGVEPQS 118 (691)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHH
T ss_pred HHHHHHHHHHCCEEEEEEECCCCcchhh
Confidence 9888999999999999999999887766
No 444
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.65 E-value=9.9e-08 Score=88.44 Aligned_cols=137 Identities=16% Similarity=0.269 Sum_probs=69.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcc--cccceeeeEEEEEEeCCee--EEEEEEeCCCcccccc------------
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNRGA--IRFNVWDTAGQEKFGG------------ 73 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~--~~~~g~t~~~~~~~~~~~~--~~~~i~Dt~g~~~~~~------------ 73 (385)
++++|+|++|+|||||+|.|++-...... ....+.++....+..+... ..++++|++|......
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 56999999999999999997775432211 1123334433333333322 3688999988642210
Q ss_pred --chhhh-------------hccC--c-EEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHH
Q psy125 74 --LRDGY-------------YIQG--Q-CAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSI 135 (385)
Q Consensus 74 --~~~~~-------------~~~~--d-~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~ 135 (385)
....+ ...+ | +++|+.|.........+ ..+.. ...+.++++|.||+|...........
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~---L~~~~~vI~Vi~KtD~Lt~~E~~~l~ 198 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKK---LDSKVNIIPIIAKADAISKSELTKFK 198 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHH---TCSCSEEEEEESCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHH---HhhCCCEEEEEcchhccchHHHHHHH
Confidence 00011 1122 2 35566666543322221 12222 23578999999999976544433222
Q ss_pred HH----HHhcCCeEEEEcC
Q psy125 136 VF----HRKKNLQYYDISA 150 (385)
Q Consensus 136 ~~----~~~~~~~~~~~Sa 150 (385)
.. ....+..++.+|.
T Consensus 199 ~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 199 IKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHcCCcEEecCC
Confidence 22 2334566666664
No 445
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.65 E-value=2.5e-08 Score=91.78 Aligned_cols=84 Identities=15% Similarity=0.071 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEE--EeCCe---------------eEEEEEEeCCCcccc
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF--HTNRG---------------AIRFNVWDTAGQEKF 71 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~--~~~~~---------------~~~~~i~Dt~g~~~~ 71 (385)
..+|+|+|+||||||||+|+|.+... ....+.+++|..+... ..... ...+.+||+||....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~-a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTT-TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 57999999999999999999777442 2333444444433322 22211 146889999996432
Q ss_pred cc-------chhhhhccCcEEEEEEeCCC
Q psy125 72 GG-------LRDGYYIQGQCAIIMFDVTS 93 (385)
Q Consensus 72 ~~-------~~~~~~~~~d~illV~d~~~ 93 (385)
.. .....++++|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11 23445688999999999875
No 446
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.65 E-value=1e-08 Score=102.02 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=64.6
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhc--Cccccc--------ccc------ceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLT--GEFEKK--------YVA------TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 286 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~--~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 286 (385)
...+|+++|.+|+|||||+++++. +.+... +.. ..|.+.......+....+.+.||||||+..|
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 457999999999999999999884 222110 000 1122222222223333577899999999999
Q ss_pred CcccccccccCcEEEEEEeCCChhhhhh
Q psy125 287 GGLRDGYYIQGQCAIIMFDVTSRITYKN 314 (385)
Q Consensus 287 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 314 (385)
......+++.+|++|+|+|+++..+++.
T Consensus 89 ~~~~~~~l~~aD~~llVvDa~~g~~~~~ 116 (693)
T 2xex_A 89 TVEVERSLRVLDGAVTVLDAQSGVEPQT 116 (693)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTBSCHHH
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCcHHH
Confidence 9888899999999999999999877766
No 447
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.64 E-value=1.4e-08 Score=99.40 Aligned_cols=53 Identities=25% Similarity=0.251 Sum_probs=47.0
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 146 YDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 146 ~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
..-...+.+|+++++..|++++..+|++++ +|||++++|+.....+.+.+++.
T Consensus 473 ~~~~~~~LSgGqrQrv~lARal~~~p~ill-----lDEpts~LD~~~~~~i~~~l~~~ 525 (587)
T 3qf4_A 473 VERGGRNFSGGQKQRLSIARALVKKPKVLI-----LDDCTSSVDPITEKRILDGLKRY 525 (587)
T ss_dssp ECSSSCSSCHHHHHHHHHHHHHHTCCSEEE-----EESCCTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCCCcCHHHHHHHHHHHHHHcCCCEEE-----EECCcccCCHHHHHHHHHHHHHh
Confidence 333456788999999999999999999999 99999999999999999988764
No 448
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.63 E-value=2.9e-08 Score=98.84 Aligned_cols=92 Identities=16% Similarity=0.112 Sum_probs=65.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcC--ccccc-----------ccc---ceeeEEEEEEEEeC-------CeeEEEEEee
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEKK-----------YVA---TLGVEVHPLVFHTN-------RGAIRFNVWD 279 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~~-----------~~~---~~~~~~~~~~~~~~-------~~~~~l~i~D 279 (385)
...+|+++|..++|||||+++++.. .+... +.+ ..|.|.......+. +..+.+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 3478999999999999999998732 22110 000 12223322222222 2347899999
Q ss_pred CCCccccCcccccccccCcEEEEEEeCCChhhhhh
Q psy125 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314 (385)
Q Consensus 280 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 314 (385)
|||+..|......+++.+|++|+|+|+++..+++.
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt 123 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQS 123 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHH
Confidence 99999999888899999999999999998876655
No 449
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.61 E-value=6.8e-08 Score=88.35 Aligned_cols=87 Identities=13% Similarity=0.029 Sum_probs=61.5
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc----c---cccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR----D---GYYI 295 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~---~~~~ 295 (385)
...+|.++|.||||||||+|.+.... ......+++|.......+......+.++||||........ . ...+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 35689999999999999999976432 3334556677666655444445678999999975432211 1 1467
Q ss_pred cCcEEEEEEeCCChhh
Q psy125 296 QGQCAIIMFDVTSRIT 311 (385)
Q Consensus 296 ~~~~~ilv~d~~~~~s 311 (385)
.||++++|.|++++..
T Consensus 149 ~ad~il~vvD~~~p~~ 164 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLH 164 (376)
T ss_dssp HCSEEEEEEETTSHHH
T ss_pred hcCccccccccCccHH
Confidence 9999999999998754
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.60 E-value=3.3e-08 Score=96.55 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=48.3
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE 205 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~ 205 (385)
....+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...
T Consensus 467 ~~~~~LSGGe~QRv~iAraL~~~p~lLl-----LDEPt~~LD~~~~~~l~~~l~~l~~ 519 (607)
T 3bk7_A 467 RNVEDLSGGELQRVAIAATLLRDADIYL-----LDEPSAYLDVEQRLAVSRAIRHLME 519 (607)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEE-----EECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEE-----EeCCccCCCHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999 9999999999999999999988754
No 451
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.59 E-value=3.1e-08 Score=95.40 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=48.3
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET 206 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~ 206 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...+
T Consensus 382 ~~~~LSGGq~QRv~iAraL~~~p~lLl-----LDEPT~gLD~~~~~~i~~~l~~l~~~ 434 (538)
T 3ozx_A 382 NVNDLSGGELQKLYIAATLAKEADLYV-----LDQPSSYLDVEERYIVAKAIKRVTRE 434 (538)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 455678999999999999999999999 99999999999999999999887654
No 452
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.57 E-value=5.8e-09 Score=102.35 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=45.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
.+.+|+++++..|++++..+|++++ +|||++++|+.....+.+.+++..
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~ill-----lDEpts~LD~~~~~~i~~~l~~~~ 538 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILI-----LDEATSNVDTKTEKSIQAAMWKLM 538 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEE-----ECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEE-----EECCccCCCHHHHHHHHHHHHHHc
Confidence 4577999999999999999999999 999999999999999999888753
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.7e-08 Score=96.05 Aligned_cols=53 Identities=8% Similarity=0.013 Sum_probs=47.3
Q ss_pred EEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 147 DISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 147 ~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
.....+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++..
T Consensus 216 ~~~~~~LSgGe~Qrv~iAraL~~~p~lll-----lDEPts~LD~~~~~~l~~~l~~l~ 268 (608)
T 3j16_B 216 KRDIEKLSGGELQRFAIGMSCVQEADVYM-----FDEPSSYLDVKQRLNAAQIIRSLL 268 (608)
T ss_dssp GSCTTTCCHHHHHHHHHHHHHHSCCSEEE-----EECTTTTCCHHHHHHHHHHHHGGG
T ss_pred CCChHHCCHHHHHHHHHHHHHHhCCCEEE-----EECcccCCCHHHHHHHHHHHHHHH
Confidence 34466788999999999999999999999 999999999999999988887753
No 454
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.57 E-value=1.5e-09 Score=106.14 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=44.5
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
..+.+|+++++..|++++..+|++++ +|||++++|+.....+.+.+++.
T Consensus 475 g~~LSgGq~Qrv~lAral~~~p~ill-----lDEpts~LD~~~~~~i~~~l~~~ 523 (578)
T 4a82_A 475 GVKLSGGQKQRLSIARIFLNNPPILI-----LDEATSALDLESESIIQEALDVL 523 (578)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEE-----EESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEE-----EECccccCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999 99999999999999888887664
No 455
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.57 E-value=2.9e-09 Score=104.28 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=46.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
..+.+|+++++..|++++..+|++++ +|||++++|+.....+.+.+++..
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~ill-----lDEpts~LD~~~~~~i~~~l~~~~ 527 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILI-----LDEATSALDTESERAIQAALDELQ 527 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEE-----EETTTSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEE-----EECccccCCHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999 999999999999999999888763
No 456
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.56 E-value=8.1e-08 Score=79.23 Aligned_cols=104 Identities=7% Similarity=-0.053 Sum_probs=66.9
Q ss_pred CCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHH---HH-h--cCCCCEEEEEeCC-CCcchhhhHHHHHH
Q psy125 65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL---VR-V--CENIPIVLCGNKV-DIKDRKVKAKSIVF 137 (385)
Q Consensus 65 t~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l---~~-~--~~~~~~ilv~nK~-Dl~~~~~~~~~~~~ 137 (385)
.+|+...+.+|..|+.+.|++|+|+|.+|....+ ....+..+ .. . ..+.|+++++||. |+.......++.+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3478889999999999999999999999886554 33333222 22 1 2467999999985 67543333333222
Q ss_pred HH----hcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 138 HR----KKNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 138 ~~----~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
.. .....+..|||.+|.|+.+-++||...+..
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 11 134478899999999999999999876543
No 457
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.56 E-value=4.1e-08 Score=94.82 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=47.6
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE 205 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~ 205 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++...
T Consensus 398 ~~~~LSGGe~qrv~lAraL~~~p~lLl-----LDEPt~~LD~~~~~~i~~~l~~l~~ 449 (538)
T 1yqt_A 398 EVNELSGGELQRVAIAATLLRDADIYL-----LDEPSAYLDVEQRLAVSRAIRHLME 449 (538)
T ss_dssp BGGGCCHHHHHHHHHHHHHTSCCSEEE-----EECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999 9999999999999999999988753
No 458
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.55 E-value=5.3e-08 Score=94.20 Aligned_cols=89 Identities=19% Similarity=0.211 Sum_probs=58.8
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCcccc-ccccceeeEEEEEEEEeCC-----------------------------ee
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNR-----------------------------GA 272 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------------------~~ 272 (385)
...+|+++|.+|+|||||+|++++..+.. .....++++........+. +.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 45799999999999999999999776631 1222222222111100000 00
Q ss_pred ----------EEEEEeeCCCccc-----------cCcccccccccCcEEEEEEeCCChhh
Q psy125 273 ----------IRFNVWDTAGQEK-----------FGGLRDGYYIQGQCAIIMFDVTSRIT 311 (385)
Q Consensus 273 ----------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s 311 (385)
..+.||||||+.. |..+...++..+|++|+|+|+++...
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~ 203 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEI 203 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCC
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCC
Confidence 2478999999875 33455567899999999999988533
No 459
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.55 E-value=3.5e-08 Score=96.88 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=45.5
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
.+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++..
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~ill-----lDEpts~LD~~~~~~i~~~l~~~~ 530 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILL-----LDEATSALDAENEYLVQEALDRLM 530 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEE-----EECCCSSCCHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEE-----EECcccCCCHHHHHHHHHHHHHHh
Confidence 5677999999999999999999999 999999999999999999888764
No 460
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.55 E-value=3.1e-07 Score=80.62 Aligned_cols=117 Identities=17% Similarity=0.256 Sum_probs=59.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCccc------ccceee-eEEEEEEeCCee--EEEEEEeCCCcccccc------
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYV------ATLGVE-VHPLVFHTNRGA--IRFNVWDTAGQEKFGG------ 73 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~------~~~g~t-~~~~~~~~~~~~--~~~~i~Dt~g~~~~~~------ 73 (385)
.++++|+|++|+|||||+|.|++-....... +..... +....+..+... ..++++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4789999999999999999977632211100 000001 111112222222 3678999998532100
Q ss_pred chhh----------------------hhccCcEEEEEEeCC-ChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125 74 LRDG----------------------YYIQGQCAIIMFDVT-SRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 129 (385)
Q Consensus 74 ~~~~----------------------~~~~~d~illV~d~~-~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~ 129 (385)
.... .+..+++.++++|-. .+..... ...+..+. ...+++++.+|.|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KVVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TTSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hcCcEEEEEeccccCCHH
Confidence 0000 112357777777743 2222111 12333333 348899999999976543
No 461
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.53 E-value=4e-08 Score=87.04 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=40.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHh
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQD 199 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~ 199 (385)
..+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.
T Consensus 157 ~~~LSgGq~QRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~i~~~ 201 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYKDADLYL-----LDSPFGYLDVLTEKEIFES 201 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHSCCSEEE-----EESTTTTCCHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHHCCCCEEE-----EECCcccCCHHHHHHHHHH
Confidence 45677999999999999999999999 9999999999999888774
No 462
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.51 E-value=8.4e-08 Score=102.16 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=45.3
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
.-.+.+|+++++..|+|+++.+|++++ +|||++++|+.....+.+.+.+..
T Consensus 551 ~G~~LSGGQkQRiaiARAl~~~~~Ili-----LDE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 551 RGTQLSGGQKQRIAIARALVRNPKILL-----LDEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCTTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEE-----EecccccCCHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999 999999999999888888887654
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.51 E-value=9e-09 Score=99.16 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=45.9
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++.
T Consensus 135 ~~~~LSgGe~Qrv~iA~aL~~~p~ill-----lDEPts~LD~~~~~~l~~~l~~l 184 (538)
T 3ozx_A 135 DANILSGGGLQRLLVAASLLREADVYI-----FDQPSSYLDVRERMNMAKAIREL 184 (538)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEE-----EESTTTTCCHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EECCcccCCHHHHHHHHHHHHHH
Confidence 355678999999999999999999999 99999999999999999888875
No 464
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.51 E-value=2.1e-08 Score=91.66 Aligned_cols=64 Identities=9% Similarity=-0.029 Sum_probs=43.9
Q ss_pred eEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh-------------------------------------
Q psy125 272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------------- 314 (385)
Q Consensus 272 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~------------------------------------- 314 (385)
+..+.++||+|.... .......+|++++|+|.+++...+.
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~ 242 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALK 242 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHH
Confidence 346789999996421 2334678999999998864332110
Q ss_pred ------------hheeccccCCCchHHHHHHHHHHh
Q psy125 315 ------------YYDISAKSNYNFEKPFLWLARKLI 338 (385)
Q Consensus 315 ------------~~e~Sak~~~~v~~~f~~l~~~i~ 338 (385)
++.|||++|.|+++++.+|.+.+.
T Consensus 243 ~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 243 LLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp TCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 256999999999999999988763
No 465
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.51 E-value=2e-08 Score=106.93 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=42.6
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHH
Q psy125 151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKE 202 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~ 202 (385)
.+.+|+++++..|+|++..+|++++ +|||++.+|+.....+.+.+++
T Consensus 1216 ~~LSgGQrQriaiARAllr~~~ILi-----LDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1216 TQLSGGQKQRIAIARALVRNPKILL-----LDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp CSSCHHHHHHHHHHHHHHSCCSEEE-----EESCCCSTTSHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEE-----EeCccccCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999 9999999999998888777654
No 466
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.48 E-value=1.4e-06 Score=80.80 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=83.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccce---eeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhh-----c
Q psy125 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG---VEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYY-----I 80 (385)
Q Consensus 9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g---~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~-----~ 80 (385)
...++|+|+||||||||+|.+++-.......-..+ +++...... ....-.+.++|++|..........++ .
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 45899999999999999999777332222111111 111111111 11112478899998643222222222 2
Q ss_pred cCcEEEEEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcc------------hhh-hHHHHHHH----Hhc-
Q psy125 81 QGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD------------RKV-KAKSIVFH----RKK- 141 (385)
Q Consensus 81 ~~d~illV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~------------~~~-~~~~~~~~----~~~- 141 (385)
..+..++ ++.... +... .+...+.. .+.|+++|.||.|+.- ... ...+..+. ...
T Consensus 148 ~~~~~~~-lS~G~~---~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRF---KKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCC---CHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCc---cHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3354444 665421 1111 22223332 4689999999988631 111 12222232 122
Q ss_pred --CCeEEEEcC--CCCCChHHHHHHHHHHHhcCC
Q psy125 142 --NLQYYDISA--KSNYNFEKPFLWLARKLIGDP 171 (385)
Q Consensus 142 --~~~~~~~Sa--~~~~gi~~l~~~i~~~l~~~~ 171 (385)
...++.+|+ ..+.|++++.+.+...+...+
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 236788999 455569999999988876554
No 467
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.3e-07 Score=92.13 Aligned_cols=53 Identities=8% Similarity=-0.056 Sum_probs=48.4
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE 205 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~ 205 (385)
....+.+|+++++..|++++..+|++++ +|||+.++|+..+..+.+.+++...
T Consensus 463 ~~~~~LSGGqkQRv~iAraL~~~p~lLl-----LDEPT~gLD~~~~~~i~~ll~~l~~ 515 (608)
T 3j16_B 463 QEVQHLSGGELQRVAIVLALGIPADIYL-----IDEPSAYLDSEQRIICSKVIRRFIL 515 (608)
T ss_dssp SBSSSCCHHHHHHHHHHHHTTSCCSEEE-----ECCTTTTCCHHHHHHHHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEE-----EECCCCCCCHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999 9999999999999999999988754
No 468
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.46 E-value=1.1e-07 Score=86.54 Aligned_cols=64 Identities=9% Similarity=-0.019 Sum_probs=45.9
Q ss_pred eEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh-------------------------------------
Q psy125 272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------------- 314 (385)
Q Consensus 272 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~------------------------------------- 314 (385)
++.+.||||||...+. ....+.+|++|+|+|.+....++.
T Consensus 148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~ 224 (341)
T 2p67_A 148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALH 224 (341)
T ss_dssp TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHH
Confidence 4568999999975432 224689999999999875443221
Q ss_pred ------------hheeccccCCCchHHHHHHHHHHh
Q psy125 315 ------------YYDISAKSNYNFEKPFLWLARKLI 338 (385)
Q Consensus 315 ------------~~e~Sak~~~~v~~~f~~l~~~i~ 338 (385)
++++||++|.|+++++.+|.+.+.
T Consensus 225 ~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 225 ILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred hccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 146999999999999999999764
No 469
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.42 E-value=2e-07 Score=82.44 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=36.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc
Q psy125 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70 (385)
Q Consensus 7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~ 70 (385)
...++|+++|.+|||||||+|+|++. ....+.+.+|+|+......... .+.++||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETT---TEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence 35689999999999999999996654 4445667788887765444322 578999999753
No 470
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.41 E-value=2.3e-07 Score=84.89 Aligned_cols=78 Identities=17% Similarity=0.108 Sum_probs=54.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCccc------cccccceeeEEEEEEEEeCC-------------------eeEEEEEee
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLTGEFE------KKYVATLGVEVHPLVFHTNR-------------------GAIRFNVWD 279 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------------------~~~~l~i~D 279 (385)
++++++|.+|||||||++++...... ....+++|.. .+.. ....+.+||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~------~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV------PLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE------ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE------ecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 57999999999999999998754311 1233444321 1111 234689999
Q ss_pred CCCccccC----ccccc---ccccCcEEEEEEeCCC
Q psy125 280 TAGQEKFG----GLRDG---YYIQGQCAIIMFDVTS 308 (385)
Q Consensus 280 t~G~~~~~----~~~~~---~~~~~~~~ilv~d~~~ 308 (385)
|||+.++. .+... +++.+|++++|+|+++
T Consensus 76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 99998763 23322 5789999999999987
No 471
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.41 E-value=2.1e-07 Score=89.90 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=62.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc--Cccc------------cccc------cceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLT--GEFE------------KKYV------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~--~~~~------------~~~~------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 283 (385)
.-++.|+|..++|||||..+++. +... ..+. ..-|.|.....+.+..+.+.++|+||||.
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 35799999999999999999872 1100 0000 11122222233344456678999999999
Q ss_pred cccCcccccccccCcEEEEEEeCCChhhhhh
Q psy125 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314 (385)
Q Consensus 284 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 314 (385)
..|..-....++-+|++|+|+|..+.-.-+.
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT 141 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQT 141 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHH
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCccccc
Confidence 9999888889999999999999987655444
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.39 E-value=1.8e-07 Score=91.31 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=46.5
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++..
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLl-----LDEPTs~LD~~~~~~l~~~L~~l~ 275 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYF-----FDEPSSYLDIRQRLKVARVIRRLA 275 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEE-----EECTTTTCCHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEE-----EECCcccCCHHHHHHHHHHHHHHH
Confidence 355678999999999999999999999 999999999999999999888764
No 473
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.39 E-value=4.4e-07 Score=86.25 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=62.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc-----CCCCCcccc----------------cceeeeEEEEEE-------------e
Q psy125 8 PSFKCVLVGDGGTGKTTFVKRHLT-----GEFEKKYVA----------------TLGVEVHPLVFH-------------T 53 (385)
Q Consensus 8 ~~~~i~lvG~~g~GKSTLin~ll~-----~~~~~~~~~----------------~~g~t~~~~~~~-------------~ 53 (385)
+...|+++|++||||||+++.|.. +.....+.. ..++........ .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999772 111110000 001111110000 0
Q ss_pred CCeeEEEEEEeCCCcccccc-chhh---h--hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCE-EEEEeCCCCc
Q psy125 54 NRGAIRFNVWDTAGQEKFGG-LRDG---Y--YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI-VLCGNKVDIK 126 (385)
Q Consensus 54 ~~~~~~~~i~Dt~g~~~~~~-~~~~---~--~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~-ilv~nK~Dl~ 126 (385)
.+..+.+.++||||...... .... + +..+|.+++|+|+...... ......+.. ..|+ .+++||.|..
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~---~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD---KVDVASVIVTKLDGH 253 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH---HHCCCCEEEECTTSC
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh---hcCceEEEEeCCccc
Confidence 11456789999999753221 1111 1 2378999999999775321 122222222 2564 7889999986
Q ss_pred c
Q psy125 127 D 127 (385)
Q Consensus 127 ~ 127 (385)
.
T Consensus 254 ~ 254 (504)
T 2j37_W 254 A 254 (504)
T ss_dssp C
T ss_pred c
Confidence 4
No 474
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.38 E-value=6.3e-07 Score=89.27 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=47.0
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCC--cccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 148 ISAKSNYNFEKPFLWLARKLIGDPN--LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 148 ~Sa~~~~gi~~l~~~i~~~l~~~~~--~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
..+.+.+|+++++..|++++..+|+ +++ +|||++++|+..+..+.+.+++..
T Consensus 198 ~~~~~LSGGe~QRv~iArAL~~~p~~~lLl-----LDEPtsgLD~~~~~~l~~~l~~l~ 251 (670)
T 3ux8_A 198 RSAGTLSGGEAQRIRLATQIGSRLTGVLYV-----LDEPSIGLHQRDNDRLIATLKSMR 251 (670)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHTCCCSCEEE-----EECTTTTCCGGGHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCCEEE-----EECCccCCCHHHHHHHHHHHHHHH
Confidence 3456788999999999999999988 999 999999999999999999988764
No 475
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.36 E-value=1.4e-07 Score=91.02 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=45.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
..+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++..
T Consensus 156 ~~~LSgGekQRv~iAraL~~~P~lLl-----LDEPTs~LD~~~~~~l~~~L~~l~ 205 (538)
T 1yqt_A 156 IQHLSGGELQRVAIAAALLRNATFYF-----FDEPSSYLDIRQRLNAARAIRRLS 205 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEE-----EECCcccCCHHHHHHHHHHHHHHH
Confidence 45677999999999999999999999 999999999999999998887764
No 476
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.36 E-value=7e-07 Score=77.39 Aligned_cols=104 Identities=7% Similarity=-0.070 Sum_probs=72.2
Q ss_pred CCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHH---HHH-H--hcCCCCEEEEEeC-CCCcchhhhHHHHHH
Q psy125 65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHR---DLV-R--VCENIPIVLCGNK-VDIKDRKVKAKSIVF 137 (385)
Q Consensus 65 t~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~---~l~-~--~~~~~~~ilv~nK-~Dl~~~~~~~~~~~~ 137 (385)
.+|+...+..|..|+.+.|++|+|+|.+|.+.++ ....+. .+. . ...+.|+++++|| .|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4678888999999999999999999999987654 222222 222 1 1367899999996 577654333333222
Q ss_pred HH----hcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125 138 HR----KKNLQYYDISAKSNYNFEKPFLWLARKLIG 169 (385)
Q Consensus 138 ~~----~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~ 169 (385)
.. .....+..+||.+|.|+.+-+++|...+..
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 11 133478899999999999999999988643
No 477
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.30 E-value=1.7e-07 Score=99.62 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=44.5
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
..+.+|+++++..|++++..+|++++ +|||++++|+.....+.+.++...
T Consensus 524 g~~LSgGq~QriaiARal~~~p~ili-----LDEpts~LD~~~~~~i~~~l~~~~ 573 (1284)
T 3g5u_A 524 GAQLSGGQKQRIAIARALVRNPKILL-----LDEATSALDTESEAVVQAALDKAR 573 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEE-----EESTTCSSCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCEEE-----EECCCCCCCHHHHHHHHHHHHHHc
Confidence 34678999999999999999999999 999999999999888888776643
No 478
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.30 E-value=2.4e-07 Score=80.94 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~ 70 (385)
++++++|.+|+|||||+|+|.+... ..+.+++|+|+........ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc-cccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 5999999999999999999775443 3456777887766544432 2578999999754
No 479
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.26 E-value=1.9e-07 Score=76.99 Aligned_cols=60 Identities=8% Similarity=-0.010 Sum_probs=45.7
Q ss_pred CCccccCcccccccccCcEEEEEEeCCChhhhhh----------------------------------------------
Q psy125 281 AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------- 314 (385)
Q Consensus 281 ~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------- 314 (385)
.||..++.+|..||.++||+|+|.|.+|+..++.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~ 189 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 189 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcC
Confidence 4899999999999999999999999999832111
Q ss_pred ---------hheeccccCCCchHHHHHHHHHHhcC
Q psy125 315 ---------YYDISAKSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 315 ---------~~e~Sak~~~~v~~~f~~l~~~i~~~ 340 (385)
+..|||++|+|+.|.++||++.+..+
T Consensus 190 L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 190 LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp GGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 78899999999999999999877544
No 480
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.26 E-value=1.4e-06 Score=71.42 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=38.9
Q ss_pred CCChHHHHHHHHHH-----HhcCCCcccccCCCCCC--CCCCCChhhhhhhHHhHHH
Q psy125 153 NYNFEKPFLWLARK-----LIGDPNLEFVAMPALLP--PEVTMDPQWQSRIEQDLKE 202 (385)
Q Consensus 153 ~~gi~~l~~~i~~~-----l~~~~~~~~~~~~~~~e--p~~~~d~~~~~~~~~~l~~ 202 (385)
.+|+++++..++++ +..+|++++ +|| |+..+|+..+..+.+.+.+
T Consensus 77 lSgG~~qr~~la~aa~~~~l~~~p~lli-----lDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 77 VQYFEELAIPILERAYREAKKDRRKVII-----IDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCEEE-----ECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHhhccccccccCCCEEE-----EeCCCCcccCCHHHHHHHHHHHhc
Confidence 44999999999996 899999999 999 9999999888777776643
No 481
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.24 E-value=2.1e-07 Score=98.90 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=44.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125 151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA 203 (385)
Q Consensus 151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~ 203 (385)
...+|+++++..|++++..+|++++ +|||++++|+.....+.+.+++.
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLi-----LDEpTs~lD~~~~~~i~~~l~~~ 1217 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILL-----LDEATSALDTESEKVVQEALDKA 1217 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEE-----EESCSSSCCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999999 99999999999999999888763
No 482
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.21 E-value=1.3e-06 Score=80.40 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=53.4
Q ss_pred CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEE--EEEEEEeCCe---------------eEEEEEeeCCCccc
Q psy125 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV--HPLVFHTNRG---------------AIRFNVWDTAGQEK 285 (385)
Q Consensus 223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 285 (385)
...++.++|.+||||||+++.+.+..+. .....++++. ..-.+.+.+. ...+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a-~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLG-NPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTT-STTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc-cccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3578999999999999999998865431 1111111111 1112233331 13578999999754
Q ss_pred cCc----c---cccccccCcEEEEEEeCCC
Q psy125 286 FGG----L---RDGYYIQGQCAIIMFDVTS 308 (385)
Q Consensus 286 ~~~----~---~~~~~~~~~~~ilv~d~~~ 308 (385)
..+ + .-.+++.+|+++.|+|+++
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 322 1 2235689999999999975
No 483
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.16 E-value=2.5e-06 Score=86.79 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=45.0
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHH
Q psy125 149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKE 202 (385)
Q Consensus 149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~ 202 (385)
...+.+|+++++..|++++..+|++++ +|||++++|+..+..+.+.+++
T Consensus 545 ~~~~LSGGqkQRvaLArAL~~~P~lLL-----LDEPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 545 PISALSGGWKMKLALARAVLRNADILL-----LDEPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTTCSEEE-----EESTTTTCCHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEE-----EECCccCCCHHHHHHHHHHHHh
Confidence 345678999999999999999999999 9999999999999999988876
No 484
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.10 E-value=1.6e-06 Score=85.91 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCcc
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGEF 249 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~~ 249 (385)
..+|+++|.+++||||++|.+++..+
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 46899999999999999999887655
No 485
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.09 E-value=3.4e-07 Score=90.32 Aligned_cols=88 Identities=16% Similarity=0.179 Sum_probs=63.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc--Ccccc--------ccc------cceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc
Q psy125 225 FKCVLVGDGGTGKTTFVKRHLT--GEFEK--------KYV------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG 288 (385)
Q Consensus 225 ~~i~~~G~~~vgks~~~~~~~~--~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 288 (385)
-+|.|+|...+|||||..+++. +.... .+. ..-|.|.....+.+..+.+.++|+||||...|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 3689999999999999999872 21111 000 0113344444445566677899999999999998
Q ss_pred ccccccccCcEEEEEEeCCChhhh
Q psy125 289 LRDGYYIQGQCAIIMFDVTSRITY 312 (385)
Q Consensus 289 ~~~~~~~~~~~~ilv~d~~~~~s~ 312 (385)
-....++-+|++|+|+|+.+.-.-
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~ 106 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQA 106 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcH
Confidence 888899999999999999875443
No 486
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.05 E-value=8.7e-07 Score=76.82 Aligned_cols=61 Identities=8% Similarity=-0.009 Sum_probs=50.8
Q ss_pred CCCccccCcccccccccCcEEEEEEeCCChhhhhh---------------------------------------------
Q psy125 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN--------------------------------------------- 314 (385)
Q Consensus 280 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--------------------------------------------- 314 (385)
..||+..+.+|..||.++||+|+|+|.+|+..++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L 273 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 273 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHc
Confidence 36899999999999999999999999999853211
Q ss_pred ----------hheeccccCCCchHHHHHHHHHHhcC
Q psy125 315 ----------YYDISAKSNYNFEKPFLWLARKLIGD 340 (385)
Q Consensus 315 ----------~~e~Sak~~~~v~~~f~~l~~~i~~~ 340 (385)
+..|||.+|+|+.|.++||++.+..+
T Consensus 274 ~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 274 HLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred CCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 78899999999999999999988543
No 487
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.00 E-value=7.5e-06 Score=71.49 Aligned_cols=24 Identities=42% Similarity=0.582 Sum_probs=20.9
Q ss_pred CCeeEEEEECCCCCCHHHHHHHHh
Q psy125 222 MPSFKCVLVGDGGTGKTTFVKRHL 245 (385)
Q Consensus 222 ~~~~~i~~~G~~~vgks~~~~~~~ 245 (385)
.....+++.|.+||||||+++.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 345789999999999999999976
No 488
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.00 E-value=2e-05 Score=73.37 Aligned_cols=107 Identities=14% Similarity=0.026 Sum_probs=61.1
Q ss_pred EEEEEEeCCCccccccch------hhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh
Q psy125 58 IRFNVWDTAGQEKFGGLR------DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK 131 (385)
Q Consensus 58 ~~~~i~Dt~g~~~~~~~~------~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~ 131 (385)
+.+.++||+|........ ......+|.+++|+|+...... ......+.. ......+++||.|......
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~--~~~i~gVIlTKlD~~~~gG- 256 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKE--ATPIGSIIVTKLDGSAKGG- 256 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH--SCTTEEEEEECCSSCSSHH-
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHh--hCCCeEEEEECCCCccccc-
Confidence 678899999964322111 1123468999999998764322 222333332 2234568899999864322
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCChHHH----HHHHHHHHhcCCCc
Q psy125 132 AKSIVFHRKKNLQYYDISAKSNYNFEKP----FLWLARKLIGDPNL 173 (385)
Q Consensus 132 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l----~~~i~~~l~~~~~~ 173 (385)
.........+.++..++. |.+++++ -..++..+.+..++
T Consensus 257 -~~ls~~~~~g~PI~fig~--Ge~vddL~~f~~~~~~~~llg~gd~ 299 (443)
T 3dm5_A 257 -GALSAVAATGAPIKFIGT--GEKIDDIEPFDPPRFVSRLLGLGDI 299 (443)
T ss_dssp -HHHHHHHTTCCCEEEEEC--SSSTTCEEECCHHHHHHHHTTTTCH
T ss_pred -HHHHHHHHHCCCEEEEEc--CCChHHhhhCCHHHHHHHHcCCCcH
Confidence 223344456778877775 6666543 24555666554433
No 489
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.00 E-value=2.6e-06 Score=69.32 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=33.3
Q ss_pred CCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhh
Q psy125 152 SNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQ 193 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~ 193 (385)
..+++++++..|++++..+|.+++ +|||+.++|+..+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~ll-----lDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVV-----FNLPEKVCQERNK 119 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEE-----ECCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEE-----EeCCHHHHHHHHh
Confidence 346888999999999999999999 9999999999855
No 490
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.95 E-value=9.1e-06 Score=78.59 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=41.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCccc-ccceeeeEEEEEE---eCCeeEEEEEEeCCCccc
Q psy125 6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYV-ATLGVEVHPLVFH---TNRGAIRFNVWDTAGQEK 70 (385)
Q Consensus 6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~-~~~g~t~~~~~~~---~~~~~~~~~i~Dt~g~~~ 70 (385)
..+..+|+|+|.+|+|||||+|+|++....-.+. .+.+.|....... .......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3456899999999999999999987765321111 1123333222211 123456788999999753
No 491
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.93 E-value=5.1e-06 Score=84.56 Aligned_cols=48 Identities=25% Similarity=0.173 Sum_probs=43.1
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHH
Q psy125 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKE 202 (385)
Q Consensus 150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~ 202 (385)
....+|+++++..|++++..+|++++ +|||++++|+.....+.+.+++
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLL-----LDEPT~gLD~~s~~~L~~~L~~ 946 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIV-----LDEPTNYLDRDSLGALSKALKE 946 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEE-----EECGGGTCCHHHHHHHHHHHHS
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEE-----EECCccCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999 9999999999998887776654
No 492
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.82 E-value=3.3e-05 Score=77.17 Aligned_cols=91 Identities=21% Similarity=0.155 Sum_probs=60.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCc--------cc--cccc------cceeeEEEEEEEEe--C-----CeeEEEEEeeC
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHLTGE--------FE--KKYV------ATLGVEVHPLVFHT--N-----RGAIRFNVWDT 280 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~~~~--------~~--~~~~------~~~~~~~~~~~~~~--~-----~~~~~l~i~Dt 280 (385)
.-+++|+|....|||||..+++... .. ..+. ..-|.|.....+.+ . ...+.++|+||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 3579999999999999999987211 00 0010 11122222222222 1 23578999999
Q ss_pred CCccccCcccccccccCcEEEEEEeCCChhhhhh
Q psy125 281 AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314 (385)
Q Consensus 281 ~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 314 (385)
||.-.|..-....++-+||+|+|+|+.+.-.-+.
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT 126 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS 126 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH
Confidence 9999999888889999999999999987554443
No 493
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.69 E-value=1.2e-05 Score=72.83 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q psy125 224 SFKCVLVGDGGTGKTTFVKRHL 245 (385)
Q Consensus 224 ~~~i~~~G~~~vgks~~~~~~~ 245 (385)
...+.++|.+|+||||+++.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999976
No 494
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.68 E-value=0.00018 Score=67.23 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=49.5
Q ss_pred eeEEEEEEeCCCcccccc-chh-----hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCC-C-EEEEEeCCCCcc
Q psy125 56 GAIRFNVWDTAGQEKFGG-LRD-----GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENI-P-IVLCGNKVDIKD 127 (385)
Q Consensus 56 ~~~~~~i~Dt~g~~~~~~-~~~-----~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~-~-~ilv~nK~Dl~~ 127 (385)
..+.+.++||||...... ... ..+..+|.+++|+|+.... ........+ .... + ..+++||.|...
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~---~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF---KEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH---HTTSCSCEEEEEECSSSCS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH---hhcccCCeEEEEeCCCCcc
Confidence 346788999999754211 111 1123689999999986543 222222222 2345 5 788999999754
Q ss_pred hhhhHHHHHHHHhcCCeEEEEc
Q psy125 128 RKVKAKSIVFHRKKNLQYYDIS 149 (385)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~S 149 (385)
.. .....+....+.++..++
T Consensus 253 ~~--g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 253 KG--GGALSAVAETKAPIKFIG 272 (432)
T ss_dssp TT--HHHHHHHHHSSCCEEEEC
T ss_pred ch--HHHHHHHHHHCCCEEEee
Confidence 32 122335555667776664
No 495
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.66 E-value=5.1e-06 Score=78.38 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=37.1
Q ss_pred CCCChHHHHHHHHHH--HhcCCCc----ccccCCCCCC-CCCCCChhhhhhhHHhHHH
Q psy125 152 SNYNFEKPFLWLARK--LIGDPNL----EFVAMPALLP-PEVTMDPQWQSRIEQDLKE 202 (385)
Q Consensus 152 ~~~gi~~l~~~i~~~--l~~~~~~----~~~~~~~~~e-p~~~~d~~~~~~~~~~l~~ 202 (385)
+.+|++.++..++++ +..+|++ ++ +|| |+.++|+. ...+.+.+++
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLl-----LDEpPts~LD~~-~~~l~~l~~~ 286 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCI-----VDTPSISQLDEN-LAELHHIIEK 286 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEE-----EECCCGGGSCSS-CHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEE-----EeCCcccccChh-HHHHHHHHHH
Confidence 345899999999999 9999999 99 999 99999998 5555555444
No 496
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.64 E-value=0.00034 Score=65.31 Aligned_cols=47 Identities=9% Similarity=-0.062 Sum_probs=44.1
Q ss_pred CCChHHHHHHHHHHHhcCC--CcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125 153 NYNFEKPFLWLARKLIGDP--NLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 204 (385)
Q Consensus 153 ~~gi~~l~~~i~~~l~~~~--~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~ 204 (385)
.+|+++++..|++++..+| .+++ +|||++++|+..+..+.+.|++..
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~Ll-----LDEpt~~LD~~~~~~l~~~L~~l~ 344 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVV-----FDEVDAGIGGAAAIAVAEQLSRLA 344 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEE-----ESSTTTTCCHHHHHHHHHHHHHHT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEE-----EECCCCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999 9999 999999999999999999998764
No 497
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.60 E-value=4.6e-05 Score=67.93 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=47.0
Q ss_pred ccccCcccccccccCcEEEEEEeCCChh-hhhh----------------------------------------------h
Q psy125 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKN----------------------------------------------Y 315 (385)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~----------------------------------------------~ 315 (385)
++++..+...+++++|++++|||++++. +|+. +
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~ 145 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDV 145 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeE
Confidence 7889999999999999999999999986 7763 6
Q ss_pred heeccccCCCchHHHHHHHH
Q psy125 316 YDISAKSNYNFEKPFLWLAR 335 (385)
Q Consensus 316 ~e~Sak~~~~v~~~f~~l~~ 335 (385)
+++||++|.||+++|..+..
T Consensus 146 ~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 146 LKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp EECCTTTCTTHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHhhccC
Confidence 89999999999999987643
No 498
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.57 E-value=0.00016 Score=70.78 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy125 10 FKCVLVGDGGTGKTTFVKRHLTG 32 (385)
Q Consensus 10 ~~i~lvG~~g~GKSTLin~ll~~ 32 (385)
..|+|+|++|||||||++.|.+-
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSC
T ss_pred CeEEEECCCCChHHHHHHHHhCC
Confidence 36999999999999999997764
No 499
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.54 E-value=0.00038 Score=64.76 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=52.2
Q ss_pred eEEEEEEeCCCccc--ccc-ch---hh--hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcch
Q psy125 57 AIRFNVWDTAGQEK--FGG-LR---DG--YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128 (385)
Q Consensus 57 ~~~~~i~Dt~g~~~--~~~-~~---~~--~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~ 128 (385)
...+.++||+|... ... .. .. ....++.+++|+|+...... ......+... ..+..+++||.|....
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc--cCCcEEEEeccccccc
Confidence 45678999999643 111 11 11 12356899999998764332 2233333321 2356789999997543
Q ss_pred hhhHHHHHHHHhcCCeEEEEcCCCCCCh
Q psy125 129 KVKAKSIVFHRKKNLQYYDISAKSNYNF 156 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (385)
- -.........+.++..++. |.++
T Consensus 254 ~--G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 254 G--GGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp H--HHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred c--hHHHHHHHHHCCCEEEEEC--CCCh
Confidence 2 2233344556788877775 5554
No 500
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.52 E-value=7.4e-05 Score=66.49 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCC--cccccCCCCCCCCCCCChhhh
Q psy125 158 KPFLWLARKLIGDPN--LEFVAMPALLPPEVTMDPQWQ 193 (385)
Q Consensus 158 ~l~~~i~~~l~~~~~--~~~~~~~~~~ep~~~~d~~~~ 193 (385)
+++..+++++...|. +++ +| |++++|+..+
T Consensus 207 kqr~~iaral~~~P~e~lLv-----LD-ptsglD~~~~ 238 (302)
T 3b9q_A 207 ACKKAVGKIVSGAPNEILLV-----LD-GNTGLNMLPQ 238 (302)
T ss_dssp HHHHHHHTTSTTCCSEEEEE-----EE-GGGGGGGHHH
T ss_pred HHHHHHHHhhccCCCeeEEE-----Ee-CCCCcCHHHH
Confidence 678888999999999 988 99 9999987644
Done!