RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy125
(385 letters)
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 369 bits (950), Expect = e-129
Identities = 189/218 (86%), Positives = 197/218 (90%), Gaps = 3/218 (1%)
Query: 1 MAAEMD---MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA 57
MA+ FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG
Sbjct: 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63
Query: 58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV 117
I+FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIV
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV 123
Query: 118 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 177
LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA
Sbjct: 124 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 183
Query: 178 MPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
MPAL PPEV MDP ++ E DL+ AQ TALPD+D+DL
Sbjct: 184 MPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL 221
Score = 266 bits (681), Expect = 1e-88
Identities = 144/218 (66%), Positives = 152/218 (69%), Gaps = 48/218 (22%)
Query: 216 MAAEMD---MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA 272
MA+ FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG
Sbjct: 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63
Query: 273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------ 314
I+FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV 123
Query: 315 ---------------------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 347
YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA
Sbjct: 124 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 183
Query: 348 MPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 385
MPAL PPEV MDP ++ E DL+ AQ TALPD+D+DL
Sbjct: 184 MPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL 221
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 320 bits (823), Expect = e-110
Identities = 92/207 (44%), Positives = 126/207 (60%), Gaps = 4/207 (1%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQ 68
+K L+GDGG GKTT++ R L G FEK Y AT+G HP+ F ++G I+FNVWDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD 127
EK L+D YYI AI+ FDVTSRIT +N+ W ++ V PIV+C NK+DIK+
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 128 RKVKAKSIVFH--RKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPE 185
R+ +K +V + KN +Y++ISAK+ +NF PFL LAR G P+L FV+ L P E
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTE 191
Query: 186 VTMDPQWQSRIEQDLKEAQETALPDDD 212
V D + Q + + ++
Sbjct: 192 VNYDYHSPEESKYIDYMEQASKMAPEE 218
Score = 230 bits (589), Expect = 6e-75
Identities = 76/207 (36%), Positives = 99/207 (47%), Gaps = 49/207 (23%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQ 283
+K L+GDGG GKTT++ R L G FEK Y AT+G HP+ F ++G I+FNVWDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
EK L+D YYI AI+ FDVTSRIT +N
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 315 -------------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPE 355
Y++ISAK+ +NF PFL LAR G P+L FV+ L P E
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTE 191
Query: 356 VTMDPQWQSRIEQDLKEAQETALPDDD 382
V D + Q + + ++
Sbjct: 192 VNYDYHSPEESKYIDYMEQASKMAPEE 218
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 144 bits (365), Expect = 1e-41
Identities = 56/180 (31%), Positives = 96/180 (53%), Gaps = 18/180 (10%)
Query: 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NR 55
M + + K +++GD G GKT+ + +++ +F +Y AT+G + F T +
Sbjct: 1 MTSRKKV-LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTKEVMVDD 54
Query: 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRV 110
+ +WDTAGQE+F L +Y C +++FDVT+ T+K + +W + R
Sbjct: 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114
Query: 111 CENIPIVLCGNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
EN P V+ GNK+D+++R+V K + K N+ Y++ SAK N E+ F +AR +
Sbjct: 115 PENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Score = 86.6 bits (215), Expect = 5e-20
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NR 270
M + + K +++GD G GKT+ + +++ +F +Y AT+G + F T +
Sbjct: 1 MTSRKKV-LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTKEVMVDD 54
Query: 271 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+ +WDTAGQE+F L +Y C +++FDVT+ T+K
Sbjct: 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 98
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 138 bits (351), Expect = 6e-40
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 17/175 (9%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 64
FK +L+GDGG GK++ + R++T +F+ + T+GVE F + + +WD
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE-----FLNKDLEVDGHFVTMQIWD 62
Query: 65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLC 119
TAGQE+F LR +Y C ++ F V +++N+ NW ++ V+ E+ P V+
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122
Query: 120 GNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 172
GNK+DI +R+V + + Y++ SAK N F R+++ +
Sbjct: 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATED 177
Score = 81.8 bits (203), Expect = 1e-18
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 279
FK +L+GDGG GK++ + R++T +F+ + T+GVE F + + +WD
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE-----FLNKDLEVDGHFVTMQIWD 62
Query: 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
TAGQE+F LR +Y C ++ F V +++N
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN 97
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 136 bits (346), Expect = 3e-39
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
M +K V+VG GG GK+ + + F + T+ V ++ DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGE-TCLLDILDTA 59
Query: 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
GQE++ +RD Y G+ + +F + + +++++ + + RV +++P+VL GNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
Query: 125 IKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ R V ++ R + Y + SAK+ E F L R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
Score = 80.6 bits (200), Expect = 3e-18
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
M +K V+VG GG GK+ + + F + T+ V ++ DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGE-TCLLDILDTA 59
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
GQE++ +RD Y G+ + +F + + ++++
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 136 bits (345), Expect = 4e-39
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 64
K V+VG+G GK++ ++R+ G F K Y T+GV+ F N +R +WD
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVD-----FLERQIQVNDEDVRLMLWD 60
Query: 65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD 124
TAGQE+F + YY Q +++F T R +++ + +W +V +IP L NK+D
Sbjct: 61 TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID 120
Query: 125 IKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ D +A+ ++ L++Y S K + N + F +LA K +
Sbjct: 121 LLDDSCIKNEEAEG--LAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166
Score = 81.4 bits (202), Expect = 1e-18
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 57/166 (34%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 279
K V+VG+G GK++ ++R+ G F K Y T+GV+ F N +R +WD
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVD-----FLERQIQVNDEDVRLMLWD 60
Query: 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------- 314
TAGQE+F + YY Q +++F T R +++
Sbjct: 61 TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID 120
Query: 315 ----------------------YYDISAKSNYNFEKPFLWLARKLI 338
+Y S K + N + F +LA K +
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 136 bits (345), Expect = 5e-39
Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT------NRGAIRFNVW 63
K V++GDG +GKT+ F K+Y T+G++ F + +W
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLD-----FFLRRITLPGNLNVTLQIW 61
Query: 64 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE----NIPIVLC 119
D GQ G + D Y Q ++++D+T+ +++N+ +W+ + +V E + L
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 120 GNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
GNK+D++ + K F ++ + +SAK+ + F +A +++G
Sbjct: 122 GNKIDLEHMRTIKPEKHLR--FCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173
Score = 88.0 bits (219), Expect = 6e-21
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT------NRGAIRFNVW 278
K V++GDG +GKT+ F K+Y T+G++ F + +W
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLD-----FFLRRITLPGNLNVTLQIW 61
Query: 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
D GQ G + D Y Q ++++D+T+ +++N
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFEN 97
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 136 bits (344), Expect = 8e-39
Identities = 47/180 (26%), Positives = 92/180 (51%), Gaps = 15/180 (8%)
Query: 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAI 58
M++ K +++GD G GKT+ + R++ ++ ++Y AT+G + + ++
Sbjct: 1 MSSRKKN-ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK-VA 58
Query: 59 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCEN 113
VWDTAGQE+F L +Y C ++++DVT+ +++N+ +W + V E
Sbjct: 59 TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 118
Query: 114 IPIVLCGNKVDIKD--RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
P V+ GNK+D ++ + V A+ + ++ + SAK+ N + F +AR +
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELA-KSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
Score = 86.5 bits (215), Expect = 3e-20
Identities = 29/101 (28%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAI 273
M++ K +++GD G GKT+ + R++ ++ ++Y AT+G + + ++
Sbjct: 1 MSSRKKN-ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK-VA 58
Query: 274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
VWDTAGQE+F L +Y C ++++DVT+ +++N
Sbjct: 59 TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFEN 99
Score = 27.5 bits (62), Expect = 4.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 315 YYDISAKSNYNFEKPFLWLARKLI 338
+ SAK+ N + F +AR +
Sbjct: 154 LFLTSAKNAINVDTAFEEIARSAL 177
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 135 bits (341), Expect = 3e-38
Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
M +K V+VG GG GK+ + + F +Y T+ V ++ DTA
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTA 77
Query: 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
GQE++ +RD Y G+ + +F + + ++ ++ + + RV +++P+VL GNK D
Sbjct: 78 GQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCD 137
Query: 125 IKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ R V ++ + + + + SAK+ E F L R++
Sbjct: 138 LPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182
Score = 79.2 bits (196), Expect = 1e-17
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
M +K V+VG GG GK+ + + F +Y T+ V ++ DTA
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTA 77
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
GQE++ +RD Y G+ + +F + + ++ +
Sbjct: 78 GQEEYSAMRDQYMRTGEGFLCVFAINNSKSFAD 110
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 133 bits (338), Expect = 5e-38
Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 11/174 (6%)
Query: 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAI 58
MA + D FK +++GD G GK++ + R F Y+ T+GV+ + + + + +
Sbjct: 2 MARDYDH-LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEK--V 58
Query: 59 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVL 118
+ +WDTAGQE+F + YY I+++DVTS ++ NV W ++ + C+++ +L
Sbjct: 59 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL 118
Query: 119 CGNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
GNK D +RKV A F + +Q ++ SAK N N E+ F + ++
Sbjct: 119 VGNKNDDPERKVVETEDAYK--FAGQMGIQLFETSAKENVNVEEMFNCITELVL 170
Score = 79.5 bits (197), Expect = 8e-18
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAI 273
MA + D FK +++GD G GK++ + R F Y+ T+GV+ + + + + +
Sbjct: 2 MARDYDH-LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEK--V 58
Query: 274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+ +WDTAGQE+F + YY I+++DVTS ++ N
Sbjct: 59 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVN 99
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 132 bits (335), Expect = 2e-37
Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
+ K ++VG GG GK+ + + EF + Y T V ++ ++ DTA
Sbjct: 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTA 74
Query: 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
GQE + +RD Y+ G+ + +F +T ++ ++ ++RV EN+P +L GNK D
Sbjct: 75 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 134
Query: 125 IKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
++D R+V ++ + N+ Y + SAK+ N +K F L R++
Sbjct: 135 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 180
Score = 80.7 bits (200), Expect = 4e-18
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
+ K ++VG GG GK+ + + EF + Y T V ++ ++ DTA
Sbjct: 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTA 74
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
GQE + +RD Y+ G+ + +F +T ++
Sbjct: 75 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAA 107
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 132 bits (335), Expect = 2e-37
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
+K V+VG G GK+ + + F +Y T+ V ++ DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQE 63
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 127
++ +RD Y G+ + +F + + +++++ ++ + RV E++P+VL GNK D+
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 128 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
R V ++ R + + + SAK+ + F L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
Score = 76.5 bits (189), Expect = 1e-16
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
+K V+VG G GK+ + + F +Y T+ V ++ DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQE 63
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
++ +RD Y G+ + +F + + ++++
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFED 93
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 133 bits (336), Expect = 2e-37
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 9/170 (5%)
Query: 7 MPS----FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNV 62
MP ++ V+ G GG GK++ V R + G F Y+ T+ ++ +
Sbjct: 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKS-VCTLQI 60
Query: 63 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLC 119
DT G +F ++ +G I++F VTS+ + + + ++ +V++ E+IP++L
Sbjct: 61 TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV 120
Query: 120 GNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
GNK D R+V ++ ++ + + SAK NYN ++ F L
Sbjct: 121 GNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET 170
Score = 78.0 bits (193), Expect = 5e-17
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 222 MPS----FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNV 277
MP ++ V+ G GG GK++ V R + G F Y+ T+ ++ +
Sbjct: 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKS-VCTLQI 60
Query: 278 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
DT G +F ++ +G I++F VTS+ + +
Sbjct: 61 TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEE 97
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 131 bits (333), Expect = 3e-37
Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
+ K ++VG GG GK+ + + EF + Y T V ++ ++ DTA
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTA 60
Query: 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
GQE + +RD Y+ G+ + +F +T ++ ++ ++RV EN+P +L GNK D
Sbjct: 61 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120
Query: 125 IKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
++D R+V ++ + N+ Y + SAK+ N +K F L R
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163
Score = 79.1 bits (196), Expect = 9e-18
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
+ K ++VG GG GK+ + + EF + Y T V ++ ++ DTA
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTA 60
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
GQE + +RD Y+ G+ + +F +T ++
Sbjct: 61 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAA 93
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 131 bits (332), Expect = 3e-37
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK VL+G+G GKT+ V R+ +F K++ TLG + + +WDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD- 127
+F L YY AI+++D+T +++ V NW ++L ++ I + + GNK+D++
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 128 RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
R V A+S + ++Y SAK N E+ FL L +++I
Sbjct: 127 RHVSIQEAES--YAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168
Score = 83.7 bits (208), Expect = 2e-19
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK VL+G+G GKT+ V R+ +F K++ TLG + + +WDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+F L YY AI+++D+T +++
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQK 96
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 131 bits (333), Expect = 6e-37
Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 5/165 (3%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
+ K V++G GKT+ + + GEF + Y T+ +V ++ DTA
Sbjct: 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKD-EFHLHLVDTA 80
Query: 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
GQ+++ L + I ++++ VTS +++ + + ++ L +P+VL GNK D
Sbjct: 81 GQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKAD 140
Query: 125 IKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
+ R+V + + + SA+ N + F + +++
Sbjct: 141 LSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
Score = 80.7 bits (200), Expect = 5e-18
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
+ K V++G GKT+ + + GEF + Y T+ +V ++ DTA
Sbjct: 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKD-EFHLHLVDTA 80
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
GQ+++ L + I ++++ VTS +++
Sbjct: 81 GQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQV 113
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 132 bits (333), Expect = 7e-37
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 11/178 (6%)
Query: 1 MAAEMDMPS----FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 56
M+ D + FK V +G+ GKT+ + R + F+ Y AT+G++ +
Sbjct: 4 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 63
Query: 57 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIP 115
+R +WDTAG E+F L Y A++++D+T+ +++ W D+ ++
Sbjct: 64 TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 123
Query: 116 IVLCGNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
I+L GNK D+ D++ + + ++ N+ + + SAK+ YN ++ F +A L G
Sbjct: 124 IMLVGNKTDLADKRQVSIEEGER--KAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179
Score = 84.3 bits (209), Expect = 3e-19
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 216 MAAEMDMPS----FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 271
M+ D + FK V +G+ GKT+ + R + F+ Y AT+G++ +
Sbjct: 4 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 63
Query: 272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+R +WDTAG E+F L Y A++++D+T+ +++
Sbjct: 64 TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ 106
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 130 bits (329), Expect = 1e-36
Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Query: 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
FK VL+G+ GK++ V R + G+F + +T+G + ++F +WDTAGQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKD 127
E++ L YY Q AI+++D+T+ ++ NW ++L R NI I L GNK D+ +
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 128 -RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
R V A+S + +L + + SAK++ N + F+ +A+KL
Sbjct: 126 KRAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Score = 81.8 bits (203), Expect = 1e-18
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
FK VL+G+ GK++ V R + G+F + +T+G + ++F +WDTAGQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
E++ L YY Q AI+++D+T+ ++
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFAR 96
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 129 bits (328), Expect = 1e-36
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 5/161 (3%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK +LVG+ G GK+T + + + + + ++ + V+D Q
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 70 KFGG-LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 126
GG L+D G +I+F VT R ++ VP L ++P++L GNK D+
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 127 D-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
R+V + + ++ + SA ++N + F R
Sbjct: 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163
Score = 77.6 bits (192), Expect = 3e-17
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK +LVG+ G GK+T + + + + + ++ + V+D Q
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 285 KFGG-LRDGYYIQGQCAIIMFDVTSRITYKN 314
GG L+D G +I+F VT R ++
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSK 93
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 129 bits (328), Expect = 2e-36
Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 7/165 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK V +G+ GKT+ + R + F+ Y AT+G++ + +R +WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKD- 127
+F L Y A++++D+T+ ++ W D+ ++ I+L GNK D+ D
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 128 RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
R+V + ++ N+ + + SAK+ YN ++ F +A L G
Sbjct: 135 RQVSTEEGER--KAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177
Score = 82.6 bits (205), Expect = 7e-19
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 48/163 (29%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK V +G+ GKT+ + R + F+ Y AT+G++ + +R +WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
+F L Y A++++D+T+ ++
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 315 ------------------YYDISAKSNYNFEKPFLWLARKLIG 339
+ + SAK+ YN ++ F +A L G
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 129 bits (327), Expect = 2e-36
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Query: 7 MP---SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 63
MP S K ++G GK++ + + G+F Y T+ L+ + +
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQ-EYHLQLV 59
Query: 64 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGN 121
DTAGQ+++ Y I I+++ VTS +++ + H L+ + IPI+L GN
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 122 KVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
K D+ R + + N + + SAK N F + +
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167
Score = 77.2 bits (191), Expect = 6e-17
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 222 MP---SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 278
MP S K ++G GK++ + + G+F Y T+ L+ + +
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQ-EYHLQLV 59
Query: 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
DTAGQ+++ Y I I+++ VTS +++
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEV 95
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 129 bits (326), Expect = 2e-36
Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 6/163 (3%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
K +L+GD G GK+ + R + +F ++ T+G++ N ++ +WDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
+F + YY I+++D+T T+ N+ W + + + ++L GNK D++ R
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123
Query: 129 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
V ++ ++ + + + SAK++ N + F LA+ +
Sbjct: 124 VVTADQGEA--LAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 164
Score = 78.4 bits (194), Expect = 2e-17
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
K +L+GD G GK+ + R + +F ++ T+G++ N ++ +WDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+F + YY I+++D+T T+ N
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTN 93
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 130 bits (328), Expect = 2e-36
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 5/161 (3%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK +LVG+ G GK+T + + + + + ++ + V+D Q
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 70 KFGG-LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 126
GG LRD G +I+F VT R ++ VP L ++P++L GNK D+
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143
Query: 127 D-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
R+V + + ++ + SA ++N + F R
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184
Score = 77.6 bits (192), Expect = 4e-17
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK +LVG+ G GK+T + + + + + ++ + V+D Q
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 285 KFGG-LRDGYYIQGQCAIIMFDVTSRITYKN 314
GG LRD G +I+F VT R ++
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSK 114
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 130 bits (328), Expect = 2e-36
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 17/177 (9%)
Query: 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NR 55
+ + K L+GD G GK++ V R + F+ T+G F T
Sbjct: 15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGN 69
Query: 56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENI 114
+F +WDTAGQE+F L YY A+I++D+T + ++ + W ++L ENI
Sbjct: 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENI 129
Query: 115 PIVLCGNKVDIKD-RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
+ + GNK D+ D R+V AK + + SAK+ N E+ F ++R++
Sbjct: 130 VMAIAGNKCDLSDIREVPLKDAKE--YAESIGAIVVETSAKNAINIEELFQGISRQI 184
Score = 83.4 bits (207), Expect = 5e-19
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 215 LMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----N 269
L+ + K L+GD G GK++ V R + F+ T+G F T
Sbjct: 14 LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCG 68
Query: 270 RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+F +WDTAGQE+F L YY A+I++D+T + ++
Sbjct: 69 NELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYT 113
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 130 bits (330), Expect = 3e-36
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE----------VHPLVFHTNRGAIR 59
K + +GD G GKTTF+ R+ +F K++ T+G++ P +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIV 117
+WDTAGQE+F L ++ ++MFD+TS+ ++ NV NW L CEN IV
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 118 LCGNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
L GNK D+ D++ +A+ K + Y++ SA + N EK L ++
Sbjct: 146 LIGNKADLPDQREVNERQARE--LADKYGIPYFETSAATGQNVEKAVETLLDLIM 198
Score = 79.3 bits (196), Expect = 2e-17
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE----------VHPLVFHTNRGAIR 274
K + +GD G GKTTF+ R+ +F K++ T+G++ P +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+WDTAGQE+F L ++ ++MFD+TS+ ++ N
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN 125
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 130 bits (328), Expect = 3e-36
Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
+ K ++VG GG GK+ + + EF + Y T V ++ ++ DTA
Sbjct: 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTA 70
Query: 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
GQE + +RD Y+ G+ + +F +T ++ ++ ++RV EN+P +L GNK D
Sbjct: 71 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 130
Query: 125 IKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
++D R+V ++ + N+ Y + SAK+ N +K F L R
Sbjct: 131 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 173
Score = 78.8 bits (195), Expect = 3e-17
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
+ K ++VG GG GK+ + + EF + Y T V ++ ++ DTA
Sbjct: 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTA 70
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
GQE + +RD Y+ G+ + +F +T ++
Sbjct: 71 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAA 103
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 129 bits (326), Expect = 4e-36
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 6/171 (3%)
Query: 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
M + K V+VG GG GK+ + + F Y T+ + R
Sbjct: 2 MDPPPSE-THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGI-PARL 59
Query: 61 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVL 118
++ DTAGQE+FG +R+ Y G +++F + R ++ V ++RV ++ P+VL
Sbjct: 60 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119
Query: 119 CGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
GNK D++ R+V ++++ F ++ Y++ SAK N ++ F L R +
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
Score = 75.6 bits (187), Expect = 2e-16
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 275
M + K V+VG GG GK+ + + F Y T+ + R
Sbjct: 2 MDPPPSE-THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGI-PARL 59
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
++ DTAGQE+FG +R+ Y G +++F + R ++
Sbjct: 60 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNE 98
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 128 bits (325), Expect = 4e-36
Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRF 60
M +K V++G GG GK+ + +TG F +KY T+ +EV +
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEV-------DSSPSVL 53
Query: 61 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVL 118
+ DTAG E+F +RD Y GQ I+++ + ++ +++++ ++RV E +P++L
Sbjct: 54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVIL 113
Query: 119 CGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
GNKVD++ R+V ++ + + + SAKS ++ F + R
Sbjct: 114 VGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162
Score = 76.7 bits (190), Expect = 6e-17
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRF 275
M +K V++G GG GK+ + +TG F +KY T+ +EV +
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEV-------DSSPSVL 53
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+ DTAG E+F +RD Y GQ I+++ + ++ ++++
Sbjct: 54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQD 92
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 128 bits (325), Expect = 4e-36
Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 17/168 (10%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 64
K VL+GD G GK++ V R + +F + +T+G F + N ++F +WD
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA-----FFSQTLAVNDATVKFEIWD 67
Query: 65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKV 123
TAGQE++ L YY AII+FDVT++ +++ W ++L N+ + L GNK
Sbjct: 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 127
Query: 124 DIKD-RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
D+ D RKV A++ + ++ L + + SAK+ N ++ F +AR+L
Sbjct: 128 DLLDARKVTAEDAQT--YAQENGLFFMETSAKTATNVKEIFYEIARRL 173
Score = 80.3 bits (199), Expect = 4e-18
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 279
K VL+GD G GK++ V R + +F + +T+G F + N ++F +WD
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA-----FFSQTLAVNDATVKFEIWD 67
Query: 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
TAGQE++ L YY AII+FDVT++ +++
Sbjct: 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFER 102
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 129 bits (326), Expect = 4e-36
Identities = 44/166 (26%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 67
FK +++G+ GKT+F+ R+ F +V+T+G++ V + H R ++ +WDTAG
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR--VKLQIWDTAG 81
Query: 68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIK 126
QE++ + YY I+M+D+T+ ++ V +W + +N ++L GNK D++
Sbjct: 82 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141
Query: 127 DRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ +V K + + +++ SAK N + + F L +
Sbjct: 142 EERVVPTEKGQL--LAEQLGFDFFEASAKENISVRQAFERLVDAIC 185
Score = 79.6 bits (197), Expect = 1e-17
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 198 QDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 257
+E + D M FK +++G+ GKT+F+ R+ F +V+T+
Sbjct: 5 HHHSSGRENLYFQGNFDYM--------FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV 56
Query: 258 GVE--VHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
G++ V + H R ++ +WDTAGQE++ + YY I+M+D+T+ ++
Sbjct: 57 GIDFKVKTVYRHEKR--VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 113
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 129 bits (327), Expect = 5e-36
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 43/199 (21%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE------------------------ 45
+K VL+G+ GK++ V R F + T+G
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 46 -------------VHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 92
++ N I+F++WDTAGQE++ + YY CAI++FD++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 93 SRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDIS 149
+ T W L ++ N I+L NK+D +V + + + NL + S
Sbjct: 128 NSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQK--YAQDNNLLFIQTS 184
Query: 150 AKSNYNFEKPFLWLARKLI 168
AK+ N + F LA ++
Sbjct: 185 AKTGTNIKNIFYMLAEEIY 203
Score = 77.2 bits (190), Expect = 1e-16
Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 82/196 (41%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE------------------------ 260
+K VL+G+ GK++ V R F + T+G
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 261 -------------VHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 307
++ N I+F++WDTAGQE++ + YY CAI++FD++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 308 SRITYKN---------------------------------------------YYDISAKS 322
+ T + SAK+
Sbjct: 128 NSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKT 187
Query: 323 NYNFEKPFLWLARKLI 338
N + F LA ++
Sbjct: 188 GTNIKNIFYMLAEEIY 203
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 129 bits (327), Expect = 5e-36
Identities = 42/165 (25%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 67
K +L+GD G GK+ + R + +F ++ T+G++ + + + + ++ +WDTAG
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK--VKLQLWDTAG 78
Query: 68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIK 126
QE+F + YY I+++DVT T+ N+ W + + + ++L GNK D++
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138
Query: 127 DRKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
R V + ++ ++ + + + SAK++ N + F LA+ +
Sbjct: 139 TRVVTADQGEA--LAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181
Score = 78.5 bits (194), Expect = 3e-17
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 282
K +L+GD G GK+ + R + +F ++ T+G++ + + + + ++ +WDTAG
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK--VKLQLWDTAG 78
Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
QE+F + YY I+++DVT T+ N
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTN 110
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 128 bits (324), Expect = 5e-36
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 17/172 (9%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFN 61
+ K L+GD G GK++ + R + F+ T+G F T +F
Sbjct: 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGAS-----FMTKTVQYQNELHKFL 58
Query: 62 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCG 120
+WDTAG E+F L YY AII++D+T T+ + NW R+L + +I + + G
Sbjct: 59 IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 118
Query: 121 NKVDIKD-RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
NK D+ D R+V AK + + + + SAK+ N + F+ ++R++
Sbjct: 119 NKCDLTDVREVMERDAKD--YADSIHAIFVETSAKNAININELFIEISRRIP 168
Score = 81.4 bits (202), Expect = 1e-18
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFN 276
+ K L+GD G GK++ + R + F+ T+G F T +F
Sbjct: 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGAS-----FMTKTVQYQNELHKFL 58
Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+WDTAG E+F L YY AII++D+T T+
Sbjct: 59 IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFST 96
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 129 bits (326), Expect = 6e-36
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE---------VHPLVFHTNRG-AIR 59
K + +GD G GKT+ + ++ G+F K++ T+G++ + RG I
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIV 117
+WDTAG E+F L ++ +++FD+T+ ++ NV NW L EN IV
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 118 LCGNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
LCGNK D++D++ +A+ K + Y++ SA + N L ++
Sbjct: 132 LCGNKSDLEDQRAVKEEEARE--LAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Score = 77.7 bits (192), Expect = 5e-17
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE---------VHPLVFHTNRG-AIR 274
K + +GD G GKT+ + ++ G+F K++ T+G++ + RG I
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+WDTAG E+F L ++ +++FD+T+ ++ N
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLN 111
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 128 bits (325), Expect = 6e-36
Identities = 45/166 (27%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 67
FK +L+G+ GKT+F+ R+ F +V+T+G++ V + H R I+ +WDTAG
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR--IKLQIWDTAG 80
Query: 68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIK 126
QE++ + YY ++M+D+ ++ ++ V +W + +N ++L GNK D++
Sbjct: 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140
Query: 127 DRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
D +V + ++++ SAK N N ++ F L +
Sbjct: 141 DERVVPAEDGRR--LADDLGFEFFEASAKENINVKQVFERLVDVIC 184
Score = 79.2 bits (196), Expect = 1e-17
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 282
FK +L+G+ GKT+F+ R+ F +V+T+G++ V + H R I+ +WDTAG
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR--IKLQIWDTAG 80
Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
QE++ + YY ++M+D+ ++ ++
Sbjct: 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAA 112
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 128 bits (324), Expect = 7e-36
Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK +++G+ GTGK+ + + + +F+ T+GVE + + ++ +WDTAGQE
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
+F + YY A++++D+TSR TY + NW D + +NI I+LCGNK D+
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ +A F ++ L + + SA + N E+ F+ ARK++
Sbjct: 131 REVTFLEASR--FAQENELMFLETSALTGENVEEAFVQCARKIL 172
Score = 80.3 bits (199), Expect = 5e-18
Identities = 29/90 (32%), Positives = 52/90 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK +++G+ GTGK+ + + + +F+ T+GVE + + ++ +WDTAGQE
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+F + YY A++++D+TSR TY
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNA 100
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 127 bits (323), Expect = 7e-36
Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
M +K V++G GG GK+ + + G F +KY T+ V + + DTA
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQ-QCMLEILDTA 59
Query: 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
G E+F +RD Y GQ +++ +T++ T+ ++ + ++RV E++P++L GNK D
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 125 IKD-RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
++D R V + +++ + N + + SAKS N + F L R
Sbjct: 120 LEDERVVGKEQGQNLA-RQWCNCAFLESSAKSKINVNEIFYDLVR 163
Score = 78.7 bits (195), Expect = 1e-17
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
M +K V++G GG GK+ + + G F +KY T+ V + + DTA
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQ-QCMLEILDTA 59
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
G E+F +RD Y GQ +++ +T++ T+ +
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFND 92
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 128 bits (325), Expect = 8e-36
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK VL+G+ G GKT V+R G F AT+GV+ N ++ +WDTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
+F + YY I+ +D+T +++ +P W R++ + + VL GNK+D+ +R
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ +A+ F +++ Y + SAK + N EK FL LA +LI
Sbjct: 147 REVSQQRAEE--FSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188
Score = 79.6 bits (197), Expect = 1e-17
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK VL+G+ G GKT V+R G F AT+GV+ N ++ +WDTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+F + YY I+ +D+T +++
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRC 116
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 128 bits (323), Expect = 8e-36
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 6/161 (3%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
++ + G GG GK++ V R + G F + Y+ T+ ++ + DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS-ICTLQITDTTGSH 62
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIK 126
+F ++ +G I+++ +TSR + + + + + + E+IPI+L GNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 127 D-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
R+V +++ R + + SAK N+N ++ F L
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163
Score = 76.8 bits (190), Expect = 6e-17
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
++ + G GG GK++ V R + G F + Y+ T+ ++ + DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS-ICTLQITDTTGSH 62
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+F ++ +G I+++ +TSR + +
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEE 92
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 128 bits (325), Expect = 9e-36
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK VL+GD G GK+ + R EF + +T+GVE + I+ +WDTAGQE
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
++ + YY A++++D+ +TY+NV W ++L NI I+L GNK D++
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
+ +A++ F K NL + + SA + N E+ F + ++
Sbjct: 126 RAVPTDEARA--FAEKNNLSFIETSALDSTNVEEAFKNILTEI 166
Score = 81.6 bits (202), Expect = 2e-18
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK VL+GD G GK+ + R EF + +T+GVE + I+ +WDTAGQE
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
++ + YY A++++D+ +TY+N
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYEN 95
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 128 bits (324), Expect = 1e-35
Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK +++G GTGK+ + + + +F++ T+GVE V + ++ +WDTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
+F + YY A++++D+TSR TY ++ W D + NI ++LCGNK D+
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ +A F ++ L + + SA + N E+ FL AR ++
Sbjct: 146 REVTFLEASR--FAQENELMFLETSALTGENVEEAFLKCARTIL 187
Score = 80.4 bits (199), Expect = 6e-18
Identities = 30/90 (33%), Positives = 53/90 (58%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK +++G GTGK+ + + + +F++ T+GVE V + ++ +WDTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+F + YY A++++D+TSR TY +
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNS 115
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 128 bits (324), Expect = 1e-35
Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 7/164 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK +++G+ GKT+F+ R+ F +V+T+G++ + N I+ +WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
++ + YY I+M+D+T+ ++ V +W + +N ++L GNK D++D
Sbjct: 69 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+V + + ++++ SAK N N ++ F L +
Sbjct: 129 RVVSSERGRQ--LADHLGFEFFEASAKDNINVKQTFERLVDVIC 170
Score = 78.8 bits (195), Expect = 3e-17
Identities = 26/90 (28%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK +++G+ GKT+F+ R+ F +V+T+G++ + N I+ +WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
++ + YY I+M+D+T+ ++
Sbjct: 69 RYRTITTAYYRGAMGFILMYDITNEESFNA 98
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 127 bits (322), Expect = 1e-35
Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK +++GD G GK+ + + +F T+GVE + + I+ +WDTAGQE
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
+F + YY A++++D+T R TY ++ +W D + N I+L GNK D++ +
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ +AK F + L + + SAK+ N E FL A+K+
Sbjct: 136 RDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
Score = 80.3 bits (199), Expect = 4e-18
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK +++GD G GK+ + + +F T+GVE + + I+ +WDTAGQE
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+F + YY A++++D+T R TY +
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNH 105
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 127 bits (322), Expect = 1e-35
Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Query: 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
MA D FK +L+GD G GKT + R F +++T+G++ + I+
Sbjct: 1 MAKTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKL 59
Query: 61 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLC 119
+WDTAGQE+F + YY ++++D+T+ ++ N+ NW R++ ++ ++
Sbjct: 60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL 119
Query: 120 GNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
GNK D+ D++ + + +++ + SAK+N N E F LAR +
Sbjct: 120 GNKCDVNDKRQVSKERGEK--LALDYGIKFMETSAKANINVENAFFTLARDIK 170
Score = 79.2 bits (196), Expect = 1e-17
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 275
MA D FK +L+GD G GKT + R F +++T+G++ + I+
Sbjct: 1 MAKTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKL 59
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+WDTAGQE+F + YY ++++D+T+ ++ N
Sbjct: 60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 98
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 128 bits (323), Expect = 1e-35
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK VL+GD G GK+ + R EF + +T+GVE + I+ +WDTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
++ + YY A++++D+ +TY+NV W ++L NI I+L GNK D++
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
+ +A++ F K L + + SA + N E F + ++
Sbjct: 150 RAVPTDEARA--FAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
Score = 80.3 bits (199), Expect = 5e-18
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK VL+GD G GK+ + R EF + +T+GVE + I+ +WDTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
++ + YY A++++D+ +TY+N
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYEN 119
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 127 bits (322), Expect = 2e-35
Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK +++GD G GK+ + + F+ + T+GVE + + + I+ +WDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
F + YY A++++D+T R T+ ++ +W D + N+ I+L GNK D++ R
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ + ++ F R+ L + + SAK+ N E+ F+ A+++
Sbjct: 142 RDVKREEGEA--FAREHGLIFMETSAKTACNVEEAFINTAKEIY 183
Score = 78.8 bits (195), Expect = 2e-17
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK +++GD G GK+ + + F+ + T+GVE + + + I+ +WDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
F + YY A++++D+T R T+ +
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNH 111
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 127 bits (322), Expect = 2e-35
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK VL+G+ G GKT + R EF T+GVE A++ +WDTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
++ + YY A+++FD+T TY V W ++L I ++L GNK D+
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ +A+ F L + + SA + N E F + +++
Sbjct: 146 REVPTEEARM--FAENNGLLFLETSALDSTNVELAFETVLKEIF 187
Score = 80.7 bits (200), Expect = 4e-18
Identities = 31/90 (34%), Positives = 45/90 (50%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK VL+G+ G GKT + R EF T+GVE A++ +WDTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
++ + YY A+++FD+T TY
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAV 115
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 128 bits (323), Expect = 2e-35
Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
M +E D FK +L+G+ G GK+ + R + Y++T+GV+ + ++
Sbjct: 1 MNSEYDY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKL 59
Query: 61 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLC 119
+WDTAGQE+F + YY II++DVT + ++ V W +++ R + +L
Sbjct: 60 QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV 119
Query: 120 GNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
GNK D+KD++V AK F + + + SA + N E FL +AR++
Sbjct: 120 GNKCDLKDKRVVEYDVAKE--FADANKMPFLETSALDSTNVEDAFLTMARQIK 170
Score = 80.0 bits (198), Expect = 9e-18
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 275
M +E D FK +L+G+ G GK+ + R + Y++T+GV+ + ++
Sbjct: 1 MNSEYDY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKL 59
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+WDTAGQE+F + YY II++DVT + ++
Sbjct: 60 QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 98
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 127 bits (322), Expect = 2e-35
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
K +++G+ G GK++ + R F+ + AT+GV+ + + +WDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKD 127
+F L YY Q I+++DVT R T+ + NW +L C +I +L GNK+D ++
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135
Query: 128 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 173
R+V + F RK ++ + + SAK+ + F L K+I P L
Sbjct: 136 REVDRNEGLK--FARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182
Score = 80.0 bits (198), Expect = 9e-18
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
K +++G+ G GK++ + R F+ + AT+GV+ + + +WDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+F L YY Q I+++DVT R T+
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVK 105
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 127 bits (322), Expect = 2e-35
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
+K VL GD GK++F+ R EF + ATLGV+ + +WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKD- 127
+F + Y+ + ++++DVT ++ N+ W + E +PI+L GNK DI+D
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 128 ------RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ V + + + SAK N + L LAR++
Sbjct: 149 AATEGQKCVPGHFGEK--LAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196
Score = 80.0 bits (198), Expect = 7e-18
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
+K VL GD GK++F+ R EF + ATLGV+ + +WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+F + Y+ + ++++DVT ++ N
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLN 118
Score = 27.2 bits (61), Expect = 8.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 319 SAKSNYNFEKPFLWLARKLI 338
SAK N + L LAR++
Sbjct: 177 SAKDGSNIVEAVLHLAREVK 196
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 126 bits (320), Expect = 3e-35
Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 18/170 (10%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRF 60
+P++K V+VGDGG GK+ + F Y T+ E+ +
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEI-------DNQWAIL 68
Query: 61 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVL 118
+V DTAGQE+F +R+ Y G +I++ VT + ++++V +H+ ++RV E+ P++L
Sbjct: 69 DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128
Query: 119 CGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSN-YNFEKPFLWLAR 165
NKVD+ RKV + + K N+ Y + SAK N +K F L R
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
Score = 78.7 bits (195), Expect = 2e-17
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRF 275
+P++K V+VGDGG GK+ + F Y T+ E+ +
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEI-------DNQWAIL 68
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+V DTAGQE+F +R+ Y G +I++ VT + ++++
Sbjct: 69 DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 125 bits (316), Expect = 1e-34
Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 7/164 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK +L+GD G GK+ + R + + Y++T+GV+ + I+ +WDTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
+F + YY I+++DVT + ++ NV W +++ R EN+ +L GNK D+ +
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
KV AK F + + + SAK+ N E+ F+ +A ++
Sbjct: 154 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195
Score = 80.0 bits (198), Expect = 8e-18
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 193 QSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK 252
S E + + + + + D + FK +L+GD G GK+ + R + +
Sbjct: 10 HSSGENLYFQGRPMSSMNPEYDYL--------FKLLLIGDSGVGKSCLLLRFADDTYTES 61
Query: 253 YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITY 312
Y++T+GV+ + I+ +WDTAGQE+F + YY I+++DVT + ++
Sbjct: 62 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 121
Query: 313 KN 314
N
Sbjct: 122 NN 123
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 125 bits (315), Expect = 2e-34
Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 7/164 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK +L+GD G GK+ + R + + Y++T+GV+ + I+ +WDTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
+F + YY I+++DVT + ++ NV W +++ R EN+ +L GNK D+ +
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
KV AK F + + + SAK+ N E+ F+ +A ++
Sbjct: 137 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178
Score = 77.7 bits (192), Expect = 5e-17
Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK +L+GD G GK+ + R + + Y++T+GV+ + I+ +WDTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+F + YY I+++DVT + ++ N
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNN 106
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 124 bits (314), Expect = 4e-34
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 29/187 (15%)
Query: 4 EMDMPS---FKCVLVGDGGTGKTTFVKR--HLTGEFEKKYVATLGVEVHPLVFHT----- 53
+D+ + K +VG+ GK+ + +F K Y T GVE
Sbjct: 12 PIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVE-----VVVAPVTI 66
Query: 54 NRGAIRFNVW--DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC 111
+ ++ DTAG + + Y+ AI++FDV+S ++++ W L
Sbjct: 67 PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSAR 126
Query: 112 ----ENIPIVLCGNKVDIKD-RKV----KAKSIVFHRKKNLQYYDISAK-SNYNFEKPFL 161
+ VL NK D+ R A+ + L ++D+SA + + PFL
Sbjct: 127 PDRERPLRAVLVANKTDLPPQRHQVRLDMAQD--WATTNTLDFFDVSANPPGKDADAPFL 184
Query: 162 WLARKLI 168
+A
Sbjct: 185 SIATTFY 191
Score = 76.9 bits (190), Expect = 1e-16
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 219 EMDMPS---FKCVLVGDGGTGKTTFVKR--HLTGEFEKKYVATLGVEVHPLVFHT----- 268
+D+ + K +VG+ GK+ + +F K Y T GVE
Sbjct: 12 PIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVE-----VVVAPVTI 66
Query: 269 NRGAIRFNVW--DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+ ++ DTAG + + Y+ AI++FDV+S ++++
Sbjct: 67 PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFES 114
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 124 bits (314), Expect = 5e-34
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 7/164 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK VL+GD G GK+ + R EF +T+GVE I+ +WDTAGQE
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
++ + YY A+I++D++ +Y+N +W +L +N+ + L GNK D+
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ ++K+ F ++ L + + SA ++ N +K F L +
Sbjct: 134 RAVPTEESKT--FAQENQLLFTETSALNSENVDKAFEELINTIY 175
Score = 80.1 bits (198), Expect = 1e-17
Identities = 31/90 (34%), Positives = 48/90 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
FK VL+GD G GK+ + R EF +T+GVE I+ +WDTAGQE
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
++ + YY A+I++D++ +Y+N
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYEN 103
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 123 bits (311), Expect = 5e-34
Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
FK +LVGD G GKT + R G F +++T+G++ V + ++ +WDTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKD 127
E+F + YY ++++DVT++ ++ N+ W ++ ++ ++L GNKVD
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 128 RKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+V + ++ L + + SAK+ N + F +A++L
Sbjct: 131 ERVVKREDGEK--LAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173
Score = 74.5 bits (184), Expect = 4e-16
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
FK +LVGD G GKT + R G F +++T+G++ V + ++ +WDTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
E+F + YY ++++DVT++ ++ N
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDN 101
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 123 bits (312), Expect = 6e-34
Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
FK VLVGD GKT V+R TG F ++ +T+GV+ ++ +WDTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
+F + YY AI+ +D+T R ++ +VP+W D+ + NI +L GNK D+ +
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
Query: 129 KV----KAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLI 168
+ +A+S + L + SAK + N E+ FL +A +LI
Sbjct: 150 REVSLAEAQS--LAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
Score = 80.0 bits (198), Expect = 8e-18
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 209 PDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT 268
PD+ D + FK VLVGD GKT V+R TG F ++ +T+GV+
Sbjct: 22 PDEQYDFL--------FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI 73
Query: 269 NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
++ +WDTAGQE+F + YY AI+ +D+T R ++ +
Sbjct: 74 QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLS 119
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 122 bits (310), Expect = 6e-34
Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 6/160 (3%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
+K +L+G G GK+ + G + G + V+D Q+
Sbjct: 3 YKVLLLGAPGVGKSALARI-FGGVEDGPEAEAAGHTYDRSIVVDGE-EASLMVYDIWEQD 60
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 127
L G +I++ VT + +++ L R +++PI+L GNK D+
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120
Query: 128 -RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
R+V + + ++ + SA ++N + F + R
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160
Score = 72.1 bits (178), Expect = 2e-15
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
+K +L+G G GK+ + G + G + V+D Q+
Sbjct: 3 YKVLLLGAPGVGKSALARI-FGGVEDGPEAEAAGHTYDRSIVVDGE-EASLMVYDIWEQD 60
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
L G +I++ VT + +++
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEK 90
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 122 bits (308), Expect = 1e-33
Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 7/165 (4%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
M ++ VL+GD G GKT+ + + LG +V+ + V DT
Sbjct: 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTW 60
Query: 67 GQEKFGG--LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNK 122
EK ++ G +I++ + R ++++ L R +++PI+L GNK
Sbjct: 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120
Query: 123 VDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
D+ R+V + + ++ + SA +N + F + R
Sbjct: 121 ADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165
Score = 71.4 bits (176), Expect = 5e-15
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
M ++ VL+GD G GKT+ + + LG +V+ + V DT
Sbjct: 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTW 60
Query: 282 GQEKFGG--LRDGYYIQGQCAIIMFDVTSRITYKN 314
EK ++ G +I++ + R ++++
Sbjct: 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFES 95
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 121 bits (307), Expect = 3e-33
Identities = 42/164 (25%), Positives = 86/164 (52%), Gaps = 6/164 (3%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
+ +++G G GKT+ ++R F + +T+GV+ IR +WDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
+F + YY + I+++D+T + T+ ++P W + + + E+ ++L GNK+D +
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+ + + + +++ + SAK N+N ++ FL L ++
Sbjct: 147 REITRQQGEKFA-QQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189
Score = 77.7 bits (192), Expect = 4e-17
Identities = 26/90 (28%), Positives = 48/90 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
+ +++G G GKT+ ++R F + +T+GV+ IR +WDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+F + YY + I+++D+T + T+ +
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDD 116
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 120 bits (302), Expect = 1e-32
Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 16/175 (9%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHP---LVFHTNRGAIRFNVWD 64
K ++VG+ G+GKTT +++ + + AT+G++V + + + NVWD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRIT-YKNVPNWHRDLVRVCENIPIVLCGNKV 123
AG+E+F + Q + ++D++ + W ++ + P++L G +
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL 122
Query: 124 DIKDRKVKAKSIVFHRKKNLQYYDI----------SAKSNYNFEKPFLWLARKLI 168
D+ D K + + K+ L + + + K + + +
Sbjct: 123 DVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177
Score = 80.5 bits (199), Expect = 4e-18
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHP---LVFHTNRGAIRFNVWD 279
K ++VG+ G+GKTT +++ + + AT+G++V + + + NVWD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 309
AG+E+F + Q + ++D++
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKG 92
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 119 bits (301), Expect = 2e-32
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 7/166 (4%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
K + G G GK+ V R LT F +Y TL + + + DTA
Sbjct: 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDE-VVSMEILDTA 84
Query: 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
GQE R+G+ G+ ++++D+T R +++ V L + +N+ ++L GNK D
Sbjct: 85 GQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143
Query: 125 IKD-RKV-KAKSIVFHRKKNLQYYDISAKSNY-NFEKPFLWLARKL 167
+ R+V + + +Y+ SA + N + F L R++
Sbjct: 144 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
Score = 73.0 bits (180), Expect = 2e-15
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
K + G G GK+ V R LT F +Y TL + + + DTA
Sbjct: 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDE-VVSMEILDTA 84
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
GQE R+G+ G+ ++++D+T R +++
Sbjct: 85 GQEDT-IQREGHMRWGEGFVLVYDITDRGSFEE 116
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 117 bits (295), Expect = 1e-31
Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 10/172 (5%)
Query: 4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE---VHPLVF-HTNRGAIR 59
E M ++ VL+G+ G GK+T + E L+ + I
Sbjct: 1 EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60
Query: 60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
++W+ G+ ++ L D G +I++ +T R +++ L R E+IPI+
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 118 LCGNKVDIKDRKVKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
L GNK D+ + + S + ++ + SA +N ++ F + R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
Score = 68.5 bits (168), Expect = 9e-14
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 219 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE---VHPLVF-HTNRGAIR 274
E M ++ VL+G+ G GK+T + E L+ + I
Sbjct: 1 EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60
Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
++W+ G+ ++ L D G +I++ +T R +++
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEK 98
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 116 bits (294), Expect = 2e-31
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 22/173 (12%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 64
FK +++GD GKT R G F + AT+GV+ F + I+ +WD
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD-----FRERAVDIDGERIKIQLWD 75
Query: 65 TAGQEKF-GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGN 121
TAGQE+F + YY + ++D+T+ ++ ++P W + + + +IP +L GN
Sbjct: 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 135
Query: 122 KVDIKDRKV----KAKSIVFHRKKNLQYYDISAKS---NYNFEKPFLWLARKL 167
K D++ A+ F ++ ++ SAK+ N + E F+ LA KL
Sbjct: 136 KCDLRSAIQVPTDLAQK--FADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
Score = 76.5 bits (189), Expect = 1e-16
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 19/112 (16%)
Query: 209 PDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT 268
P + FK +++GD GKT R G F + AT+GV+ F
Sbjct: 13 PRGSRSRI--------FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD-----FRE 59
Query: 269 -----NRGAIRFNVWDTAGQEKF-GGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+ I+ +WDTAGQE+F + YY + ++D+T+ ++ +
Sbjct: 60 RAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS 111
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 116 bits (293), Expect = 3e-31
Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 26/175 (14%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-----VEVHPLVFHTNRGAIRFN 61
P K +VG+ +GK+ V R+LTG + ++ G + V + +
Sbjct: 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVV-------DGQSYLLL 70
Query: 62 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLC 119
+ D G + + + +F + I+++ V N+ L +P+VL
Sbjct: 71 IRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLV 125
Query: 120 GNKVDI---KDRKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
G + I R + +A+ + K YY+ A N E+ F +A+K++
Sbjct: 126 GTQDAISAANPRVIDDSRARKLS-TDLKRCTYYETCATYGLNVERVFQDVAQKVV 179
Score = 64.5 bits (158), Expect = 2e-12
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 17/102 (16%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-----VEVHPLVFHTNRGAIRFN 276
P K +VG+ +GK+ V R+LTG + ++ G + V + +
Sbjct: 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVV-------DGQSYLLL 70
Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
+ D G + + + +F + I+++ Y+
Sbjct: 71 IRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNY 107
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 117 bits (294), Expect = 3e-31
Identities = 36/177 (20%), Positives = 75/177 (42%), Gaps = 18/177 (10%)
Query: 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKR--HLTGEFEKKYVATLG------VEVHPLVFH 52
+++E ++ VL+G+ G GK+T + + + V
Sbjct: 29 ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVD----G 84
Query: 53 TNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV-- 110
+ I ++W+ G+ ++ L D G +I++ +T R +++ L R
Sbjct: 85 ESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ 142
Query: 111 CENIPIVLCGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
E+IPI+L GNK D+ R+V ++ + ++ + SA +N ++ F + R
Sbjct: 143 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199
Score = 67.0 bits (164), Expect = 4e-13
Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 14/110 (12%)
Query: 213 EDLMAAEMDMPSFKCVLVGDGGTGKTTFVKR--HLTGEFEKKYVATLG------VEVHPL 264
+ ++++E ++ VL+G+ G GK+T + + + V
Sbjct: 26 DSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVD-- 83
Query: 265 VFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+ I ++W+ G+ ++ L D G +I++ +T R +++
Sbjct: 84 --GESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEK 129
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 116 bits (291), Expect = 3e-31
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
+ S K VL+G+ GK++ V R ++ +F + T+G N ++F +WDTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDI 125
GQE+F L YY Q A++++DVT ++ +W ++L ++I I L GNK+D
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120
Query: 126 KDRKVK-----AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
+ + +K L +++ SAK+ N FL + K+
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
Score = 79.8 bits (197), Expect = 6e-18
Identities = 30/93 (32%), Positives = 50/93 (53%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
+ S K VL+G+ GK++ V R ++ +F + T+G N ++F +WDTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
GQE+F L YY Q A++++DVT ++
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIK 93
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 115 bits (289), Expect = 1e-30
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 17/173 (9%)
Query: 4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 63
E + K V+VGDG GKT + GE YV T+ E V ++W
Sbjct: 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF-ENFSHVMKYKNEEFILHLW 76
Query: 64 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNK 122
DTAGQE++ LR Y ++ F V +R ++ N+ W ++ + VL G K
Sbjct: 77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLK 136
Query: 123 VDIKDRKVK----------AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
VD++ + + + Y + S+ + + F
Sbjct: 137 VDLRKDGSDDVTKQEGDDLCQKL-----GCVAYIEASSVAKIGLNEVFEKSVD 184
Score = 82.4 bits (204), Expect = 1e-18
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 206 TALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV 265
A D + E + K V+VGDG GKT + GE YV T+ E V
Sbjct: 5 LAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF-ENFSHV 63
Query: 266 FHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
++WDTAGQE++ LR Y ++ F V +R ++ N
Sbjct: 64 MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDN 112
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 114 bits (287), Expect = 3e-30
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 63
+ KCV+VGDG GKT + + T F +Y+ T+ + + + + +W
Sbjct: 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLW 83
Query: 64 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNK 122
DTAGQE + LR Y Q +I F + S +++NV W+ ++ C N PI+L G K
Sbjct: 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143
Query: 123 VDIKD--------RKVKAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
+D++D ++ K I + + + +Y + SA + + F
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
Score = 85.2 bits (211), Expect = 1e-19
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 219 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 278
+ KCV+VGDG GKT + + T F +Y+ T+ + + + + +W
Sbjct: 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLW 83
Query: 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
DTAGQE + LR Y Q +I F + S +++N
Sbjct: 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 119
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 113 bits (284), Expect = 4e-30
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
M+A KCV VGDG GKT + + + F YV T+ + N +
Sbjct: 3 MSA---SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGATVNL 58
Query: 61 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLC 119
+WDTAGQE + LR Y I+ F + S+ +Y+NV W +L +PIVL
Sbjct: 59 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLV 118
Query: 120 GNKVDIKD------RKVKAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
G K+D++D A I + + L Y + S+KS N + F
Sbjct: 119 GTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
Score = 81.3 bits (201), Expect = 2e-18
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 275
M+A KCV VGDG GKT + + + F YV T+ + N +
Sbjct: 3 MSA---SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGATVNL 58
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+WDTAGQE + LR Y I+ F + S+ +Y+N
Sbjct: 59 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN 97
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 112 bits (282), Expect = 7e-30
Identities = 30/178 (16%), Positives = 67/178 (37%), Gaps = 30/178 (16%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRF 60
+P + ++GD +GK++ + R LTG ++ T + V +
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLV-------DGQTHLV 56
Query: 61 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV----CENIPI 116
+ + AG + I +F + +++ V H L + + +
Sbjct: 57 LIREEAGAP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL 111
Query: 117 VL--CGNKVDIKD-RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
L +++ R V +A++ + K YY+ A N ++ F +A+K++
Sbjct: 112 ALVGTQDRISASSPRVVGDARARA-LXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168
Score = 72.3 bits (178), Expect = 3e-15
Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 19/99 (19%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRF 275
+P + ++GD +GK++ + R LTG ++ T + V +
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLV-------DGQTHLV 56
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+ + AG + I +F + +++
Sbjct: 57 LIREEAGAP-----DAKFSGWADAVIFVFSLEDENSFQA 90
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 110 bits (277), Expect = 4e-29
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
MA KCV+VGDG GKT + + F ++YV T+ + + +
Sbjct: 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 68
Query: 61 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLC 119
++DTAGQE + LR Y +I F V + +++NV W +L N+P +L
Sbjct: 69 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 128
Query: 120 GNKVDIKD--------RKVKAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
G ++D++D +K K I + + L Y + SA + + F
Sbjct: 129 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
Score = 84.1 bits (208), Expect = 3e-19
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 209 PDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT 268
P MA KCV+VGDG GKT + + F ++YV T+ + + +
Sbjct: 3 PGAGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTV 61
Query: 269 NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
++DTAGQE + LR Y +I F V + +++N
Sbjct: 62 GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQN 107
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 110 bits (278), Expect = 5e-29
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 17/165 (10%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
KCVLVGDG GKT+ V + T + +Y+ T + V + +R + DTA
Sbjct: 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTA 76
Query: 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDI 125
GQ++F LR Y ++ F V S +++NV W ++ C PI+L G + D+
Sbjct: 77 GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDL 136
Query: 126 KD--------RKVKAKSIVFH-------RKKNLQYYDISAKSNYN 155
++ K K K + K Y + SA + N
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181
Score = 82.5 bits (204), Expect = 1e-18
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
KCVLVGDG GKT+ V + T + +Y+ T + V + +R + DTA
Sbjct: 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTA 76
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
GQ++F LR Y ++ F V S +++N
Sbjct: 77 GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQN 109
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 110 bits (278), Expect = 7e-29
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 23/176 (13%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
KCV VGDG GKT + + + +F Y+ T+ + + + +WDTA
Sbjct: 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTA 65
Query: 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDI 125
GQE + LR Y ++ F + S+ +Y+NV W +L R N+PIVL G K+D+
Sbjct: 66 GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125
Query: 126 KDRKVK----------------AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
+D K K I Y + S+K+ N + F +
Sbjct: 126 RDDKGYLADHTNVITSTQGEELRKQI-----GAAAYIECSSKTQQNVKAVFDTAIK 176
Score = 80.5 bits (199), Expect = 7e-18
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
KCV VGDG GKT + + + +F Y+ T+ + + + +WDTA
Sbjct: 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTA 65
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
GQE + LR Y ++ F + S+ +Y+N
Sbjct: 66 GQEDYSRLRPLSYRGADIFVLAFSLISKASYEN 98
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 110 bits (277), Expect = 7e-29
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 2 AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 61
A + S K VLVGDGG GKT+ + G F + Y T+ + + + +
Sbjct: 27 EAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGK-PVHLH 85
Query: 62 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCG 120
+WDTAGQ+ + LR +Y ++ FDVTS ++ N+ N W+ ++ C+ +PI++ G
Sbjct: 86 IWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVG 145
Query: 121 NKVDIKD--------RKVKAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
K D++ R+ + + +HR + + Y + SA+ + N F
Sbjct: 146 CKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
Score = 80.2 bits (198), Expect = 1e-17
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 217 AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 276
A + S K VLVGDGG GKT+ + G F + Y T+ + + + +
Sbjct: 27 EAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGK-PVHLH 85
Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+WDTAGQ+ + LR +Y ++ FDVTS ++ N
Sbjct: 86 IWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDN 123
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 116 bits (292), Expect = 8e-29
Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 13/174 (7%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA--------IRFN 61
K L+GDG GKT+ +K+ + F+ K T G+ V +G F+
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 62 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 121
WD GQE + + +++ D + N W R + + P+++ N
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT---DSNKHYWLRHIEKYGGKSPVIVVMN 158
Query: 122 KVDIKD-RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 173
K+D ++ K I +++ IS K+ E L ++ ++
Sbjct: 159 KIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSI 212
Score = 74.3 bits (182), Expect = 1e-14
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA--------IRFN 276
K L+GDG GKT+ +K+ + F+ K T G+ V +G F+
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
WD GQE + + +++ D + +
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLR 142
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 109 bits (275), Expect = 1e-28
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 2 AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 61
+ M K V+VGDG GKT + +F + YV T+ E + + +
Sbjct: 18 GSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELA 76
Query: 62 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCG 120
+WDTAGQE + LR Y ++ F + S + +N+P W ++ C N+PI+L G
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG 136
Query: 121 NKVDIKD--------RKVKAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
NK D++ K+K + + +++ Y + SAK+ + F
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
Score = 79.0 bits (195), Expect = 2e-17
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 217 AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 276
+ M K V+VGDG GKT + +F + YV T+ E + + +
Sbjct: 18 GSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELA 76
Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+WDTAGQE + LR Y ++ F + S + +N
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLEN 114
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 109 bits (274), Expect = 2e-28
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
M K V+VGDG GKT + EF + YV T+ + + + +WDTA
Sbjct: 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGK-QVELALWDTA 81
Query: 67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDI 125
GQE + LR Y ++ F V S + +N+P W ++ C N+PI+L NK D+
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141
Query: 126 KD--------RKVKAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
+ ++K + + + + Y + SAK+ + F
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
Score = 79.8 bits (197), Expect = 1e-17
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
M K V+VGDG GKT + EF + YV T+ + + + +WDTA
Sbjct: 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGK-QVELALWDTA 81
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
GQE + LR Y ++ F V S + +N
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLEN 114
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 108 bits (271), Expect = 4e-28
Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 9/163 (5%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
++G G GK+ + LT F +Y L ++ + V DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQ-PVHLRVMDTADLD 80
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDI 125
+ Y ++++ V SR ++ + ++ L +IP +L GNK+D+
Sbjct: 81 TPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139
Query: 126 KD-RKV-KAKSIVFHRKKNLQYYDISAKSNY-NFEKPFLWLAR 165
R+V KA+ + + ++++SA ++ + + F R
Sbjct: 140 AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182
Score = 68.0 bits (167), Expect = 1e-13
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
++G G GK+ + LT F +Y L ++ + V DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQ-PVHLRVMDTADLD 80
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+ Y ++++ V SR ++ +
Sbjct: 81 TPRNC-ERYLNWAHAFLVVYSVDSRQSFDS 109
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 105 bits (263), Expect = 4e-27
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
K V+VGD GKT + F + YV T+ E + F + I ++WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 71 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
+ +R Y +I FD++ T +V W ++ C N ++L G K D++
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125
Score = 77.4 bits (191), Expect = 4e-17
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
K V+VGD GKT + F + YV T+ E + F + I ++WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+ +R Y +I FD++ T +
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDS 96
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 105 bits (264), Expect = 4e-27
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
K V+VGD GKT + F + YV T+ E + F + I ++WDT+G
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGS 86
Query: 69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
+ +R Y +I FD++ T +V W ++ C N ++L G K D++
Sbjct: 87 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146
Score = 77.9 bits (192), Expect = 5e-17
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
K V+VGD GKT + F + YV T+ E + F + I ++WDT+G
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGS 86
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
+ +R Y +I FD++ T +
Sbjct: 87 PYYDNVRPLSYPDSDAVLICFDISRPETLDS 117
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 105 bits (263), Expect = 7e-27
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 2 AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 61
A + + K VLVGD GKT ++ + + YV T+ E + T + +
Sbjct: 20 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF-ENYTACLETEEQRVELS 78
Query: 62 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCG 120
+WDT+G + +R Y ++ FD++ T + W +++ C + ++L G
Sbjct: 79 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIG 138
Query: 121 NKVDIKD 127
K D++
Sbjct: 139 CKTDLRT 145
Score = 79.1 bits (195), Expect = 2e-17
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 217 AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 276
A + + K VLVGD GKT ++ + + YV T+ E + T + +
Sbjct: 20 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF-ENYTACLETEEQRVELS 78
Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
+WDT+G + +R Y ++ FD++ T +
Sbjct: 79 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALK 119
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 102 bits (257), Expect = 3e-26
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
+ KCV+VGDG GKT + + T F +Y+ T+ + + + + +WDTAGQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
E + LR Y Q ++I F + S +++NV W+ ++ C N PI+L G K+D++D
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 128 --------RKVKAKSIVFH-------RKKNLQYYDISAKSNYNFEKPF 160
++ K I + ++Y + SA + + F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
Score = 74.8 bits (184), Expect = 5e-16
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
+ KCV+VGDG GKT + + T F +Y+ T+ + + + + +WDTAGQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
E + LR Y Q ++I F + S +++N
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFEN 94
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 80.0 bits (197), Expect = 6e-17
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 17/169 (10%)
Query: 3 AEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNV 62
E KCV+VGDG GKT + + T F +Y+ T+ + + + + +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGL 207
Query: 63 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGN 121
WDTAG E + LR Y Q +I F + S ++ +V W+ ++ C N PI+L G
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGT 267
Query: 122 KVDIKD--------RKVKAKSIVFHRKKNL-------QYYDISAKSNYN 155
K+D++D ++ K I + + + +Y + SA +
Sbjct: 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316
Score = 55.8 bits (134), Expect = 7e-09
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%)
Query: 191 QWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFE 250
Q +E + E KCV+VGDG GKT + + T F
Sbjct: 122 QLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFP 181
Query: 251 KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI 310
+Y+ T+ + + + + +WDTAG E + LR Y Q +I F + S
Sbjct: 182 GEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA 240
Query: 311 TYKN 314
++ +
Sbjct: 241 SFHH 244
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 72.7 bits (178), Expect = 8e-15
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 53 TNRGAIRFNVWDTAGQEKF---GGLRDGYYIQGQCAIIMFDVTS--RITYKNVPNWHRDL 107
+ + + D G E+ + DG + ++ DV+ + + + +L
Sbjct: 132 ASAEKLMYFCTDQLGLEQDFEQKQMPDGK-LLVDGFLLGIDVSRGMNRNFDDQLKFVSNL 190
Query: 108 VRVC--ENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164
PIV+ K D R ++ KKNLQ + SA+SN N + F L
Sbjct: 191 YNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250
Query: 165 RKL 167
+ +
Sbjct: 251 QLI 253
Score = 29.6 bits (66), Expect = 1.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 315 YYDISAKSNYNFEKPFLWLARKL 337
+ SA+SN N + F L + +
Sbjct: 231 VVETSARSNVNVDLAFSTLVQLI 253
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 69.8 bits (171), Expect = 4e-14
Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 18/178 (10%)
Query: 9 SFKCVLVGDGGTGKTTFVKR-------HLTGE---FEKKYVATLGVEVHPLVFHTNRGA- 57
+FK V G G +GKTT +K GE + TL + PL +G
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73
Query: 58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE----- 112
RF+++ GQ + R + + D N + + E
Sbjct: 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133
Query: 113 -NIPIVLCGNKVDIKDR-KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
++PIV+ NK D+ D V+ V + + A + ++R ++
Sbjct: 134 DDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVL 191
Score = 57.8 bits (140), Expect = 4e-10
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 224 SFKCVLVGDGGTGKTTFVKR-------HLTGE---FEKKYVATLGVEVHPLVFHTNRGA- 272
+FK V G G +GKTT +K GE + TL + PL +G
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73
Query: 273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 307
RF+++ GQ + R + + D
Sbjct: 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 65.8 bits (160), Expect = 3e-12
Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 28/188 (14%)
Query: 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLVFHTNRGAIRFNVWDTA 66
K +L+G G+GK++ + + AT+ VE L F N + N+WD
Sbjct: 5 KLLLMGRSGSGKSSMRSI-IFSNYSAFDTRRLGATIDVEHSHLRFLGN---MTLNLWDCG 60
Query: 67 GQEKF-----GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHR---DLVRVCENIPIVL 118
GQ+ F +D + Q I +FDV S K++ + + L + + I +
Sbjct: 61 GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120
Query: 119 CGNKVD----------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
+K+D + ++ + + K + + LI
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLI 180
Query: 169 GDPNLEFV 176
PN+
Sbjct: 181 --PNMSNH 186
Score = 53.8 bits (129), Expect = 3e-08
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLVFHTNRGAIRFNVWDTA 281
K +L+G G+GK++ + + AT+ VE L F N + N+WD
Sbjct: 5 KLLLMGRSGSGKSSMRSI-IFSNYSAFDTRRLGATIDVEHSHLRFLGN---MTLNLWDCG 60
Query: 282 GQEKF-----GGLRDGYYIQGQCAIIMFDVTSR 309
GQ+ F +D + Q I +FDV S
Sbjct: 61 GQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST 93
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 58.8 bits (142), Expect = 2e-10
Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 15/143 (10%)
Query: 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLVFHTNRGAIRFNVWDTA 66
+ +L+G +GK++ K + + +T + + + + F +WD
Sbjct: 22 RILLMGLRRSGKSSIQKV-VFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFP 77
Query: 67 GQEKFGGL---RDGYYIQGQCAIIMFDVTSRIT--YKNVPNWHRDLVRVCENIPIVLCGN 121
GQ F + + I + D + +V ++ + +
Sbjct: 78 GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIH 137
Query: 122 KVDI--KDRKVKAKSIVFHRKKN 142
KVD D K++ + + R +
Sbjct: 138 KVDGLSDDHKIETQRDIHQRAND 160
Score = 52.3 bits (125), Expect = 3e-08
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLVFHTNRGAIRFNVWDTA 281
+ +L+G +GK++ K + + +T + + + + F +WD
Sbjct: 22 RILLMGLRRSGKSSIQKV-VFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFP 77
Query: 282 GQEKFGGL---RDGYYIQGQCAIIMFDVTSRI 310
GQ F + + I + D
Sbjct: 78 GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDY 109
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 53.3 bits (129), Expect = 1e-08
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 23/168 (13%)
Query: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
LVG +GKTTFV +G+F + + T+G + + G + +WD GQ +F
Sbjct: 26 TLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQPRFR 81
Query: 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKD 127
+ + Y + M D + + + +L + + IP+++ GNK D+
Sbjct: 82 SMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
Query: 128 --------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
K+ +I + + + Y IS K N + WL +
Sbjct: 139 ALDEKELIEKMNLSAI---QDREICCYSISCKEKDNIDITLQWLIQHS 183
Score = 47.9 bits (115), Expect = 8e-07
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
LVG +GKTTFV +G+F + + T+G + + G + +WD GQ +F
Sbjct: 26 TLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQPRFR 81
Query: 288 GLRDGYYIQGQCAIIMFDVTSR 309
+ + Y + M D +
Sbjct: 82 SMWERYCRGVSAIVYMVDAADQ 103
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 52.7 bits (127), Expect = 2e-08
Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 24/168 (14%)
Query: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
++VG GKTT + + GE + T+G V + + I F VWD GQ+K
Sbjct: 33 LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ICFTVWDVGGQDKIR 87
Query: 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKD 127
L Y+ Q I + D R + V +L ++ + + +++ NK D+ +
Sbjct: 88 PLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 128 --------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
K+ + + R + A WL+ +L
Sbjct: 145 AMPVSELTDKLGLQHL---RSRTWYVQATCATQGTGLYDGLDWLSHEL 189
Score = 44.6 bits (106), Expect = 1e-05
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
++VG GKTT + + GE + T+G V + + I F VWD GQ+K
Sbjct: 33 LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ICFTVWDVGGQDKIR 87
Query: 288 GLRDGYYIQGQCAIIMFDVTSR 309
L Y+ Q I + D R
Sbjct: 88 PLWRHYFQNTQGLIFVVDSNDR 109
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 51.8 bits (125), Expect = 3e-08
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 24/168 (14%)
Query: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
++VG GKTT + + GE + T+G V + + I F VWD GQ+K
Sbjct: 4 LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDKIR 58
Query: 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKD 127
L Y+ Q I + D R + V +L+R+ + +++ NK D+ +
Sbjct: 59 PLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 128 --------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
K+ S+ R +N A S + WL+ +L
Sbjct: 116 AMNAAEITDKLGLHSL---RHRNWYIQATCATSGDGLYEGLDWLSNQL 160
Score = 43.7 bits (104), Expect = 1e-05
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
++VG GKTT + + GE + T+G V + + I F VWD GQ+K
Sbjct: 4 LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDKIR 58
Query: 288 GLRDGYYIQGQCAIIMFDVTSR 309
L Y+ Q I + D R
Sbjct: 59 PLWRHYFQNTQGLIFVVDSNDR 80
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 51.9 bits (125), Expect = 4e-08
Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 24/171 (14%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
+ +++G GKTT +K+ + + TLG + L + N+WD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNIKTLEH----RGFKLNIWDVGGQK 73
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
Y+ I + D R + + + R+L + +++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANKQD 130
Query: 125 IKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
+ ++ SI R + + SA + + WL +
Sbjct: 131 LPGALSCNAIQEALELDSI---RSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178
Score = 44.5 bits (106), Expect = 1e-05
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
+ +++G GKTT +K+ + + TLG + L + N+WD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNIKTLEH----RGFKLNIWDVGGQK 73
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
Y+ I + D R
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADR 98
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 51.4 bits (124), Expect = 5e-08
Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 24/168 (14%)
Query: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
+++G G GKTT + R GE + T+G V + + ++F VWD G
Sbjct: 11 LILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTY----KNLKFQVWDLGGLTSIR 65
Query: 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKD 127
YY I + D R + +LV + E +V+ NK D++
Sbjct: 66 PYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122
Query: 128 --------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
+ ++ + + Q + SA ++ WL L
Sbjct: 123 AMTSSEMANSLGLPAL---KDRKWQIFKTSATKGTGLDEAMEWLVETL 167
Score = 43.3 bits (103), Expect = 2e-05
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
+++G G GKTT + R GE + T+G V + + ++F VWD G
Sbjct: 11 LILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTY----KNLKFQVWDLGGLTSIR 65
Query: 288 GLRDGYYIQGQCAIIMFDVTSR 309
YY I + D R
Sbjct: 66 PYWRCYYSNTDAVIYVVDSCDR 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 51.1 bits (123), Expect = 7e-08
Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 26/174 (14%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVA-TLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
+ +G +GKTT + + + + + T+G + + + F V+D +GQ
Sbjct: 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS----LSFTVFDMSGQ 77
Query: 69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-------NIPIVLCGN 121
++ L + YY +GQ I + D + R + +L + IPI+ N
Sbjct: 78 GRYRNLWEHYYKEGQAIIFVIDSSDR---LRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134
Query: 122 KVDIKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
K+D++D + + ++I + K A ++ WL ++
Sbjct: 135 KMDLRDAVTSVKVSQLLCLENI---KDKPWHICASDAIKGEGLQEGVDWLQDQI 185
Score = 43.8 bits (104), Expect = 2e-05
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVA-TLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
+ +G +GKTT + + + + + T+G + + + F V+D +GQ
Sbjct: 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS----LSFTVFDMSGQ 77
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSR 309
++ L + YY +GQ I + D + R
Sbjct: 78 GRYRNLWEHYYKEGQAIIFVIDSSDR 103
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 50.7 bits (122), Expect = 9e-08
Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 24/171 (14%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
+ +++G G GKTT + R GE T+G V L + ++ NVWD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVETLSYKN----LKLNVWDLGGQT 73
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
YY I + D T + + ++L + + + +++ NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDK---DRMSTASKELHLMLQEEELQDAALLVFANKQD 130
Query: 125 IKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
+++ + + ++ SA + WL +
Sbjct: 131 QPGALSASEVSKELNLVEL---KDRSWSIVASSAIKGEGITEGLDWLIDVI 178
Score = 43.4 bits (103), Expect = 2e-05
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
+ +++G G GKTT + R GE T+G V L + ++ NVWD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVETLSYKN----LKLNVWDLGGQT 73
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
YY I + D T +
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDK 98
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 50.7 bits (122), Expect = 9e-08
Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 24/171 (14%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
K ++VG GKTT + + E T+G V +V + RF +WD GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINN----TRFLMWDIGGQE 71
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
+ YY + I++ D T R + + +L ++ +++ NK D
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128
Query: 125 IKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
+K+ + +K SI + A + + W+ +L
Sbjct: 129 VKECMTVAEISQFLKLTSI---KDHQWHIQACCALTGEGLCQGLEWMMSRL 176
Score = 44.2 bits (105), Expect = 2e-05
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
K ++VG GKTT + + E T+G V +V + RF +WD GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINN----TRFLMWDIGGQE 71
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
+ YY + I++ D T R
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDR 96
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 49.9 bits (120), Expect = 2e-07
Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 24/171 (14%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
+ +L+G GKTT +K+ + + T G + + + NVWD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKSVQS----QGFKLNVWDIGGQR 71
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
K Y+ I + D R K ++L + E +P+++ NK D
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADR---KRFEETGQELTELLEEEKLSCVPVLIFANKQD 128
Query: 125 IKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
+ + +I R + Q SA + + W+ + +
Sbjct: 129 LLTAAPASEIAEGLNLHTI---RDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
Score = 42.6 bits (101), Expect = 6e-05
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
+ +L+G GKTT +K+ + + T G + + + NVWD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKSVQS----QGFKLNVWDIGGQR 71
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
K Y+ I + D R
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADR 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 49.2 bits (118), Expect = 3e-07
Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 24/171 (14%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
+ +++G GKT+ + R G+ V T+GV + L + I F VWD GQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVGVNLETLQY----KNISFEVWDLGGQT 77
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
Y+ I + D T R + +L + + +++ NK D
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDELRKSLLLIFANKQD 134
Query: 125 IKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
+ D ++ SI + S+K+ + WL +L
Sbjct: 135 LPDAASEAEIAEQLGVSSI---MNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
Score = 41.9 bits (99), Expect = 1e-04
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
+ +++G GKT+ + R G+ V T+GV + L + I F VWD GQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVGVNLETLQY----KNISFEVWDLGGQT 77
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
Y+ I + D T R
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTDR 102
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 48.8 bits (117), Expect = 4e-07
Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 24/171 (14%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
K ++VG GKTT + + E T+G V +V + RF +WD GQE
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINN----TRFLMWDIGGQE 76
Query: 70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
+ YY + I++ D T R + + +L ++ +++ NK D
Sbjct: 77 SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 133
Query: 125 IKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
+K+ + +K SI + A + + W+ +L
Sbjct: 134 VKECMTVAEISQFLKLTSI---KDHQWHIQACCALTGEGLCQGLEWMMSRL 181
Score = 42.6 bits (101), Expect = 5e-05
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
K ++VG GKTT + + E T+G V +V + RF +WD GQE
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINN----TRFLMWDIGGQE 76
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
+ YY + I++ D T R
Sbjct: 77 SLRSSWNTYYTNTEFVIVVVDSTDR 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 47.0 bits (112), Expect = 3e-06
Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 16/125 (12%)
Query: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
+ VG +GKT R LTG++ + ++ + NRG + D G E
Sbjct: 11 LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRG-NSLTLIDLPGHES-- 66
Query: 73 GLRDGY---YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-------IPIVLCGNK 122
LR + A++ F V S + V + L +V + +++ NK
Sbjct: 67 -LRFQLLDRFKSSARAVV-FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124
Query: 123 VDIKD 127
DI
Sbjct: 125 QDIAM 129
Score = 45.5 bits (108), Expect = 7e-06
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF- 286
+ VG +GKT R LTG++ + ++ + NRG + D G E
Sbjct: 11 LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRG-NSLTLIDLPGHESLR 68
Query: 287 GGLRDGYYIQGQCAIIMFDVTSR 309
L D + + + + D +
Sbjct: 69 FQLLDRFKSSARAVVFVVDSAAF 91
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 46.1 bits (110), Expect = 4e-06
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 13/120 (10%)
Query: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
V +G GKTT + ++V TL L + F +D G +
Sbjct: 29 VFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQAR 83
Query: 73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKD 127
+ Y + + D + + +L + N+PI++ GNK+D +
Sbjct: 84 RVWKNYLPAINGIVFLVDCADH---ERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
V +G GKTT + ++V TL L + F +D G +
Sbjct: 29 VFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQAR 83
Query: 288 GLRDGYYIQGQCAIIMFDVTSR 309
+ Y + + D
Sbjct: 84 RVWKNYLPAINGIVFLVDCADH 105
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 52/441 (11%), Positives = 107/441 (24%), Gaps = 187/441 (42%)
Query: 8 PSFKCVLVGDGGTGKTTFVKRHLTGE--FEKKYVATLGVEVH------------------ 47
P+ ++ G G+GKT + + K + ++
Sbjct: 149 PAKNVLIDGVLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 48 --------------------PLVFHTNRGAIRF---------------NVWDTAGQEKFG 72
L H+ + +R NV + F
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 73 GLRDGYYIQGQCAIIM-------FDVTSRITYKNVPNWHR-------------------- 105
C I++ D S T ++ H
Sbjct: 264 ---------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 106 --DL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSN-----YNFE 157
DL V P L I+D N ++ + + N
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGL--------ATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 158 KPFLWLARKLIGDPNLEFVAMPALLP-----PEVTMDPQWQSRIEQDLKEAQETALPDDD 212
+P + RK+ F + ++ P P + + W + D
Sbjct: 367 EPAEY--RKM-------FDRL-SVFPPSAHIPTILLSLIWF-------------DVIKSD 403
Query: 213 EDLMAAEMDMPSFKCVLVGDGGTGKTTF--VKRHLTGEFEKKYVATLGVEVHPLVFHTNR 270
++ ++ ++ + + L + E +Y +H R
Sbjct: 404 VMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLENEY------ALH-------R 447
Query: 271 GAI-RFNVWDTAGQEKFGGLR-DGYYIQGQCAIIMFDVTSRITYKNY--YDISAKSNYN- 325
+ +N+ T + D Y+ Y ++ + + +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYF-----------------Y-SHIGHHLKNIEHPER 489
Query: 326 ---FEKPFL---WLARKLIGD 340
F FL +L +K+ D
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHD 510
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 44.7 bits (105), Expect = 2e-05
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 9/136 (6%)
Query: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
+L+G GK++ K + + L +P I V + GQ +
Sbjct: 3 LLMGVRRCGKSSICKV-VFHNMQPLDTLYLESTSNP-SLEHFSTLIDLAVMELPGQLNYF 60
Query: 73 GLR-DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV----RVCENIPIVLCGNKVDI-- 125
D + +++ + S+ Y N ++ +V +I I + +KVD
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120
Query: 126 KDRKVKAKSIVFHRKK 141
+D KV A+ + R
Sbjct: 121 EDFKVDAQRDIMQRTG 136
Score = 38.5 bits (89), Expect = 0.003
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 5/85 (5%)
Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
+L+G GK++ K + + L +P I V + GQ +
Sbjct: 3 LLMGVRRCGKSSICKV-VFHNMQPLDTLYLESTSNP-SLEHFSTLIDLAVMELPGQLNYF 60
Query: 288 GL---RDGYYIQGQCAIIMFDVTSR 309
+ + + + D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDE 85
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 43.2 bits (102), Expect = 4e-05
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 16/125 (12%)
Query: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
++ G +GKT+ + LT + + V + PL G + D G K
Sbjct: 52 IIAGPQNSGKTSLLTL-LTTDSVRPTVVSQE----PLSAADYDG-SGVTLVDFPGHVKLR 105
Query: 73 GLRDGYYIQGQCAI--IMFDVTSRITYKNVPNWHRDLVRV--------CENIPIVLCGNK 122
Y + ++F V S + K + LV + I I++ NK
Sbjct: 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 165
Query: 123 VDIKD 127
++
Sbjct: 166 SELFT 170
Score = 38.6 bits (90), Expect = 0.002
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
++ G +GKT+ + LT + + V + PL G + D G K
Sbjct: 52 IIAGPQNSGKTSLLTL-LTTDSVRPTVVSQE----PLSAADYDG-SGVTLVDFPGHVKLR 105
Query: 288 GLRDGYYIQGQCAI--IMFDVTS 308
Y + ++F V S
Sbjct: 106 YKLSDYLKTRAKFVKGLIFMVDS 128
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 43.2 bits (102), Expect = 4e-05
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 16/125 (12%)
Query: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
++ G +GKT+ + LT + + V + + + + D G K
Sbjct: 16 IIAGPQNSGKTSLLTL-LTTDSVRPTVVSQEP-----LSAADYDGSGVTLVDFPGHVKLR 69
Query: 73 GLRDGYYIQGQCAI--IMFDVTSRITYKNVPNWHRDLVRV--------CENIPIVLCGNK 122
Y + ++F V S + K + LV + I I++ NK
Sbjct: 70 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 129
Query: 123 VDIKD 127
++
Sbjct: 130 SELFT 134
Score = 37.8 bits (88), Expect = 0.003
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
++ G +GKT+ + LT + + V + + + + D G K
Sbjct: 16 IIAGPQNSGKTSLLTL-LTTDSVRPTVVSQEP-----LSAADYDGSGVTLVDFPGHVKLR 69
Query: 288 GLRDGYYIQGQCAI--IMFDVTS 308
Y + ++F V S
Sbjct: 70 YKLSDYLKTRAKFVKGLIFMVDS 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 40.6 bits (96), Expect = 3e-04
Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 13/124 (10%)
Query: 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
K + +G GKTT + T L G I+F +D G
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAI----GNIKFTTFDLGGH 77
Query: 69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 123
+ L Y+ + + + D + +L + ++P V+ GNK+
Sbjct: 78 IQARRLWKDYFPEVNGIVFLVDAADP---ERFDEARVELDALFNIAELKDVPFVILGNKI 134
Query: 124 DIKD 127
D +
Sbjct: 135 DAPN 138
Score = 37.9 bits (89), Expect = 0.002
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
K + +G GKTT + T L G I+F +D G
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAI----GNIKFTTFDLGGH 77
Query: 284 EKFGGLRDGYYIQGQCAIIM 303
+ L Y+ + I+
Sbjct: 78 IQARRLWKDYFPEVN-GIVF 96
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 39.9 bits (93), Expect = 0.001
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 18/158 (11%)
Query: 165 RKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEM---- 220
+ L A + +D W E ++ ++ + + +
Sbjct: 250 KHHKECEELLEQAQAGTFAFPLHVDYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTA 309
Query: 221 ---------DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 271
+ +++G GKTT + + G+ + T+G V + +
Sbjct: 310 SNSPGIEGLSNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTYKN--- 365
Query: 272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 309
++FNVWD GQ+K L YY Q I + D R
Sbjct: 366 -VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR 402
Score = 39.5 bits (92), Expect = 0.002
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWD 64
+ + +++G GKTT + + G+ + T+G V + + ++FNVWD
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTYKN----VKFNVWD 372
Query: 65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLC 119
GQ+K L YY Q I + D R + ++L R+ + I++
Sbjct: 373 VGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIF 429
Query: 120 GNKVDIKD 127
NK D+ D
Sbjct: 430 ANKQDLPD 437
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 37.9 bits (88), Expect = 0.004
Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 24/176 (13%)
Query: 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWD 64
+ ++VG GKTT + + GE + T+G V + + I F VWD
Sbjct: 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWD 215
Query: 65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLC 119
GQ+K L Y+ Q I + D R + V +L+R+ + +++
Sbjct: 216 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVF 272
Query: 120 GNKVDIKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
NK D+ + K+ S+ R +N A S + WL+ +L
Sbjct: 273 ANKQDLPNAMNAAEITDKLGLHSL---RHRNWYIQATCATSGDGLYEGLDWLSNQL 325
Score = 36.8 bits (85), Expect = 0.008
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 193 QSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK 252
+ E + + + + ++VG GKTT + + GE
Sbjct: 134 VALAEGREWSLESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT 193
Query: 253 YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 309
+ T+G V + + I F VWD GQ+K L Y+ Q I + D R
Sbjct: 194 -IPTIGFNVETVEYKN----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 245
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 37.9 bits (88), Expect = 0.004
Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 15/163 (9%)
Query: 5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVW 63
+D+ V+ G GK+T +K T + E Y T V G R+ +
Sbjct: 163 VDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTT---RGINVGQFEDGYFRYQII 219
Query: 64 DTAG------QEKFGGLRDGYY-IQGQCAIIMF--DVT--SRITYKNVPNWHRDLVRVCE 112
DT G E+ + ++ +I++ D + + + ++ +
Sbjct: 220 DTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK 279
Query: 113 NIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYN 155
++P ++ NK+D+ D + + F ++K L ISA
Sbjct: 280 DLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG 322
Score = 29.4 bits (66), Expect = 2.1
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 195 RIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFE-KKY 253
I+ L+ + + +DL ++++P+ V+ G GK+T +K T + E Y
Sbjct: 142 DIDDRLRYLNKAR--EVLKDLPVVDLEIPT--VVIAGHPNVGKSTLLKALTTAKPEIASY 197
Query: 254 VATLGVEVHPLVFHTNRGAIRFNVWDTAG 282
T V G R+ + DT G
Sbjct: 198 PFTT---RGINVGQFEDGYFRYQIIDTPG 223
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 37.0 bits (85), Expect = 0.009
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 9 SFKCVLVGDGGTGKTTFV----KRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWD 64
F + VG+ G GK+T + GE + ++ + + ++ +
Sbjct: 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101
Query: 65 TAG 67
T G
Sbjct: 102 TVG 104
Score = 37.0 bits (85), Expect = 0.009
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 224 SFKCVLVGDGGTGKTTFV----KRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWD 279
F + VG+ G GK+T + GE + ++ + + ++ +
Sbjct: 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101
Query: 280 TAG 282
T G
Sbjct: 102 TVG 104
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 34.6 bits (79), Expect = 0.054
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 103 WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK--------KNLQYYDISAKSNY 154
W L R N ++L GNK D+ + VK + + K + ISA
Sbjct: 86 WLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQ 145
Query: 155 NFEK--PFLWLARK-----LIGDPN 172
+ + R ++G N
Sbjct: 146 GIAELADAIEYYRGGKDVYVVGCTN 170
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 34.0 bits (77), Expect = 0.074
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 225 FKCVLVGDGGTGKTTFVK---------RHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 275
F ++VG+ G GK+T + + +K T+ +E + +R
Sbjct: 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRL 78
Query: 276 NVWDTAGQEKFGGLRDGY-----YIQGQCAIIMFDVTSRITYKNYYD 317
V DT G RD + YI Q + D S + ++ D
Sbjct: 79 TVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHD-ESGLNRRHIID 124
Score = 33.6 bits (76), Expect = 0.079
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 14/95 (14%)
Query: 10 FKCVLVGDGGTGKTTFVK---------RHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
F ++VG+ G GK+T + + +K T+ +E + +R
Sbjct: 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRL 78
Query: 61 NVWDTAGQEKFGGLRDGY-----YIQGQCAIIMFD 90
V DT G RD + YI Q + D
Sbjct: 79 TVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHD 113
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 33.5 bits (76), Expect = 0.100
Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 35/209 (16%)
Query: 13 VLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGV-----EVHPLVFHTNRGAIRFNVWDTA 66
+ G+ G+GK++F+ L G E++ A GV E HP H N + F WD
Sbjct: 73 AVTGETGSGKSSFI-NTLRGIGNEEEGAAKTGVVEVTMERHP-YKHPNIPNVVF--WDLP 128
Query: 67 GQEKFGGLRDGYYIQGQ----CAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCG 120
G Y++ + +R D+ +
Sbjct: 129 GIGS-TNFPPDTYLEKMKFYEYDFFIIISATRFK-----KNDIDIAKAISMMKKEFYFVR 182
Query: 121 NKVD-IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
KVD + + F ++K LQ ++ + I +P + ++
Sbjct: 183 TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT---------FRENGIAEPPIFLLSNK 233
Query: 180 ALLPPEVTMDPQWQSRIEQDLKEAQETAL 208
+ + P ++ DL +
Sbjct: 234 NVCHYDF---PVLMDKLISDLPIYKRHNF 259
Score = 29.7 bits (66), Expect = 1.9
Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 23/192 (11%)
Query: 194 SRIEQDLKEAQETALPDDDEDLMAA--EMDMPSFKCVLVGDGGTGKTTFVKRHLTGE-FE 250
+ IE ++ + + + A E+D + G+ G+GK++F+ L G E
Sbjct: 40 NLIELRMRAGN---IQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI-NTLRGIGNE 95
Query: 251 KKYVATLGV-----EVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ----CAI 301
++ A GV E HP H N + F WD G Y++
Sbjct: 96 EEGAAKTGVVEVTMERHP-YKHPNIPNVVF--WDLPGIGS-TNFPPDTYLEKMKFYEYDF 151
Query: 302 IMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQ 361
+ +R KN DI AK+ +K F ++ K+ D E P E +
Sbjct: 152 FIIISATRFK-KNDIDI-AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ-D 208
Query: 362 WQSRIEQDLKEA 373
+ +E
Sbjct: 209 IRLNCVNTFREN 220
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 32.5 bits (75), Expect = 0.12
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 13/108 (12%)
Query: 58 IRFNVWDTAGQ-------EKFGGLRDGYYI-QGQCAIIMFDVTSRITYKNVPNWHRDLVR 109
+ ++ DTAG E+ G R I Q + M D T+ W + R
Sbjct: 52 MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR 111
Query: 110 VCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFE 157
+ +PI + NK DI + + +SA++ +
Sbjct: 112 LPAKLPITVVRNKADITGETLGMSEV-----NGHALIRLSARTGEGVD 154
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 31.8 bits (72), Expect = 0.27
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 19/105 (18%)
Query: 188 MDPQWQSRIE----QDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFV-- 241
M Q Q+ E A +T L + +L + D+ S +++G GG GK++ V
Sbjct: 1 MASQQQTVREWSGINTFAPATQTKLLELLGNLK--QEDVNSLTILVMGKGGVGKSSTVNS 58
Query: 242 ----KRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG 282
+ F+ P++ +R N+ DT G
Sbjct: 59 IIGERVVSISPFQ-------SEGPRPVMVSRSRAGFTLNIIDTPG 96
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 32.2 bits (73), Expect = 0.30
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 23/89 (25%)
Query: 103 WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV-----FHRKKNLQYYDI---SAKSNY 154
+ L R + PI+L GNK D+ R VK ++ + L D+ SA
Sbjct: 88 FIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGI 147
Query: 155 NFEKPFLWLARKL-----------IGDPN 172
K + + +G N
Sbjct: 148 GMAK----VMEAINRYREGGDVYVVGCTN 172
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 32.3 bits (73), Expect = 0.30
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 190 PQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVK 242
P+ DL E Q+ A +++ + + G GTG TT K
Sbjct: 16 PRGSHMTFDDLTEGQKNAF-----NIVMKAIKEKKHHVTINGPAGTGATTLTK 63
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 31.7 bits (71), Expect = 0.32
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 10 FKCVLVGDGGTGKTTFV--------KRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 61
F ++VG+ G GK+T + + T+ VE ++ +
Sbjct: 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 68
Query: 62 VWDTAG 67
+ DT G
Sbjct: 69 IVDTPG 74
Score = 31.7 bits (71), Expect = 0.32
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 225 FKCVLVGDGGTGKTTFV--------KRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 276
F ++VG+ G GK+T + + T+ VE ++ +
Sbjct: 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 68
Query: 277 VWDTAG 282
+ DT G
Sbjct: 69 IVDTPG 74
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.5 bits (72), Expect = 0.41
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 113 NIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK 158
IP V+ NK+D+ K + ++ + + +SA F+
Sbjct: 140 EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDD 185
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 31.9 bits (72), Expect = 0.43
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 13/127 (10%)
Query: 128 RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVT 187
+ A + +R++ + + NYN + I E P LL P V
Sbjct: 51 LERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINE----PDLLRPVVI 106
Query: 188 MDPQWQSRIEQDLKEAQETALP-----DDD----EDLMAAEMDMPSFKCVLVGDGGTGKT 238
+ +++ L + + D+ SF L G G+GK+
Sbjct: 107 APQFSRQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKS 166
Query: 239 TFVKRHL 245
+ L
Sbjct: 167 VIASQAL 173
Score = 28.0 bits (62), Expect = 6.9
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 13 VLVGDGGTGKTTFVKRHL 30
L G G+GK+ + L
Sbjct: 156 FLHGRAGSGKSVIASQAL 173
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 31.6 bits (72), Expect = 0.44
Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 190 PQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEF 249
P D ++ +E + VL G GTGK+T K
Sbjct: 170 PPADGAGNDDWAVPKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVA---- 225
Query: 250 EKKYVATLGVEVHPLVFHTNRGAIR 274
+LG+EV L T + A R
Sbjct: 226 --DLAESLGLEVG-LCAPTGKAARR 247
Score = 29.3 bits (66), Expect = 2.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 12 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
VL G GTGK+T K +LG+EV L T + A R
Sbjct: 207 VVLTGGPGTGKSTTTKAVA------DLAESLGLEVG-LCAPTGKAARR 247
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 31.2 bits (70), Expect = 0.51
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 215 LMAAEMDMPSFKCVLVGDGGTGKTTFVKR 243
M S V VG G+GKTT
Sbjct: 5 HHHHHHGMASMIVVFVGTAGSGKTTLTGE 33
Score = 30.8 bits (69), Expect = 0.56
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 1 MAAEMDMPSFKCVLVGDGGTGKTTFVKR 28
M S V VG G+GKTT
Sbjct: 6 HHHHHGMASMIVVFVGTAGSGKTTLTGE 33
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl
transferase domain, ATP-binding, nucleotide-BIND
nucleotidyltransferase; 2.40A {Escherichia coli}
Length = 498
Score = 31.1 bits (70), Expect = 0.71
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 162 WLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAA 218
+A +L P L + LL P P +L++ DD+E + A
Sbjct: 116 MIASQLARYPLL----LDELLDPNTLYQPTATDAYRDELRQYLLRVPEDDEEQQLEA 168
Score = 27.2 bits (60), Expect = 9.6
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 332 WLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 385
+A +L P L + LL P P +L++ DD+E
Sbjct: 116 MIASQLARYPLL----LDELLDPNTLYQPTATDAYRDELRQYLLRVPEDDEEQQ 165
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus
solfataricus}
Length = 364
Score = 30.5 bits (68), Expect = 0.84
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 196 IEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVA 255
+E D K + ++DL + D KTT + G+ ++
Sbjct: 24 LEFDEKRQAVKLHIESEDDLWLL------HLILEKDDKVVAKTT--RDVGLGKESRRIPM 75
Query: 256 TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
T+ ++V F +R + E+FG
Sbjct: 76 TIILKVDYTEFQEFTNRLRIHGIIEDAPERFG 107
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 29.5 bits (67), Expect = 0.99
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 14 LVGDGGTGKTTFVK 27
L GD G GKTT +
Sbjct: 38 LNGDLGAGKTTLTR 51
Score = 29.5 bits (67), Expect = 0.99
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 229 LVGDGGTGKTTFVK 242
L GD G GKTT +
Sbjct: 38 LNGDLGAGKTTLTR 51
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 30.1 bits (69), Expect = 1.1
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 113 NIPIVLCGNKVD-IKDRKVKAKSIVFHRKKNLQYYDI---SAKSNYNFEK 158
N P+++ NK+D I K I KK+ + +I SA N ++
Sbjct: 122 NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDE 171
>2r7h_A Putative D-alanine N-acetyltransferase of GNAT FA; putative
acetyltransferase of the GNAT family; 1.85A
{Desulfovibrio desulfuricans subsp}
Length = 177
Score = 29.4 bits (66), Expect = 1.2
Identities = 10/65 (15%), Positives = 15/65 (23%), Gaps = 13/65 (20%)
Query: 28 RHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG----GLRDGYYIQGQ 83
+ + L E RF E+ G + +Y G
Sbjct: 117 AEVVHDVRLTGGRLLFAET--SGIRKYAPTRRFY-------ERAGFSAEAVLKAFYRAGD 167
Query: 84 CAIIM 88
II
Sbjct: 168 DKIIY 172
Score = 29.4 bits (66), Expect = 1.2
Identities = 10/65 (15%), Positives = 15/65 (23%), Gaps = 13/65 (20%)
Query: 243 RHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG----GLRDGYYIQGQ 298
+ + L E RF E+ G + +Y G
Sbjct: 117 AEVVHDVRLTGGRLLFAET--SGIRKYAPTRRFY-------ERAGFSAEAVLKAFYRAGD 167
Query: 299 CAIIM 303
II
Sbjct: 168 DKIIY 172
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.2 bits (67), Expect = 1.2
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 8/66 (12%)
Query: 10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--------NRGAIRFN 61
F ++VG+ G GK+T + + + V +
Sbjct: 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 91
Query: 62 VWDTAG 67
+ DT G
Sbjct: 92 IVDTPG 97
Score = 30.2 bits (67), Expect = 1.2
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 8/66 (12%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--------NRGAIRFN 276
F ++VG+ G GK+T + + + V +
Sbjct: 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 91
Query: 277 VWDTAG 282
+ DT G
Sbjct: 92 IVDTPG 97
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 30.0 bits (68), Expect = 1.4
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 13 VLVGDGGTGKTTFVKRHLTGEFE 35
V++G+ GTGKTT + + L G +
Sbjct: 382 VMMGENGTGKTTLI-KLLAGALK 403
Score = 30.0 bits (68), Expect = 1.4
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 228 VLVGDGGTGKTTFVKRHLTGEFE 250
V++G+ GTGKTT + + L G +
Sbjct: 382 VMMGENGTGKTTLI-KLLAGALK 403
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB:
3u44_A*
Length = 1232
Score = 30.3 bits (68), Expect = 1.5
Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 8/111 (7%)
Query: 117 VLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 176
L G+ D + + K ++ L +D Y ++ L +L +
Sbjct: 879 FLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTY-----LDFIGPALARHRDLGDL 933
Query: 177 AMPALLPPEVTMDPQWQSRI---EQDLKEAQETALPDDDEDLMAAEMDMPS 224
A ++ ++ L + E + + E L A P
Sbjct: 934 AGVPAHADISGHPARFAVQMIHSYDLLDDDLEERMEEKSERLEAIRRGEPV 984
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 30.0 bits (68), Expect = 1.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 13 VLVGDGGTGKTTFVK 27
+VG G GKTTFVK
Sbjct: 316 GIVGPNGIGKTTFVK 330
Score = 30.0 bits (68), Expect = 1.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 228 VLVGDGGTGKTTFVK 242
+VG G GKTTFVK
Sbjct: 316 GIVGPNGIGKTTFVK 330
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 29.3 bits (67), Expect = 1.7
Identities = 12/61 (19%), Positives = 21/61 (34%)
Query: 107 LVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166
L + +PI+L GNK+D +A + +SA + L
Sbjct: 111 LKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL 170
Query: 167 L 167
+
Sbjct: 171 M 171
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 29.3 bits (65), Expect = 1.8
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 7 MPSFKCVLVGDGGTGKTTFV 26
+ LV GG GK+
Sbjct: 28 VAGTVGALVSPGGAGKSMLA 47
Score = 29.3 bits (65), Expect = 1.8
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 222 MPSFKCVLVGDGGTGKTTFV 241
+ LV GG GK+
Sbjct: 28 VAGTVGALVSPGGAGKSMLA 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 29.6 bits (67), Expect = 1.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 13 VLVGDGGTGKTTFVK 27
++G G GKTTF +
Sbjct: 298 GILGPNGIGKTTFAR 312
Score = 29.6 bits (67), Expect = 1.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 228 VLVGDGGTGKTTFVK 242
++G G GKTTF +
Sbjct: 298 GILGPNGIGKTTFAR 312
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 29.2 bits (65), Expect = 2.0
Identities = 14/64 (21%), Positives = 20/64 (31%)
Query: 4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 63
E + VLVG G GK+ L + A + ++ V
Sbjct: 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVV 83
Query: 64 DTAG 67
DT G
Sbjct: 84 DTPG 87
Score = 29.2 bits (65), Expect = 2.0
Identities = 14/64 (21%), Positives = 20/64 (31%)
Query: 219 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 278
E + VLVG G GK+ L + A + ++ V
Sbjct: 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVV 83
Query: 279 DTAG 282
DT G
Sbjct: 84 DTPG 87
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 29.6 bits (67), Expect = 2.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 13 VLVGDGGTGKTTFVK 27
+VG G GKTTFVK
Sbjct: 386 GIVGPNGIGKTTFVK 400
Score = 29.6 bits (67), Expect = 2.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 228 VLVGDGGTGKTTFVK 242
+VG G GKTTFVK
Sbjct: 386 GIVGPNGIGKTTFVK 400
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 28.6 bits (64), Expect = 3.0
Identities = 27/171 (15%), Positives = 62/171 (36%), Gaps = 34/171 (19%)
Query: 13 VLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG---- 67
+L G GK++F+ + + Y T + V H + ++ + DT G
Sbjct: 33 ILSGAPNVGKSSFMNIVSRANVDVQSYSFTT---KNLYVGHFDHKLNKYQIIDTPGLLDR 89
Query: 68 --QEKFGGLRDGY----YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENI------- 114
+ + +I G + + D++ + ++ + + +I
Sbjct: 90 AFENRNTIEMTTITALAHING-VILFIIDISEQCGLTI-----KEQINLFYSIKSVFSNK 143
Query: 115 PIVLCGNKVDIKD-------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEK 158
IV+ NK+D + K+ K I+ + K +++ S + E+
Sbjct: 144 SIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQ 194
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.1 bits (62), Expect = 3.2
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
+ L G G GKTT + + + + V G + R I F+V +G
Sbjct: 1 ARHVFLTGPPGVGKTTLIHK-ASEVLKSSGVPVDGFYTEEVRQGGRR--IGFDVVTLSGT 57
Query: 69 E 69
Sbjct: 58 R 58
Score = 28.1 bits (62), Expect = 3.2
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
+ L G G GKTT + + + + V G + R I F+V +G
Sbjct: 1 ARHVFLTGPPGVGKTTLIHK-ASEVLKSSGVPVDGFYTEEVRQGGRR--IGFDVVTLSGT 57
Query: 284 E 284
Sbjct: 58 R 58
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 28.3 bits (63), Expect = 3.6
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 198 QDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTG-------EFE 250
Q A + L + L + DM S +++G GG GK++ T
Sbjct: 12 QQFPAATQEKLIEFFGKL--KQKDMNSMTVLVLGKGGVGKSS------TVNSLIGEQVVR 63
Query: 251 KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG 282
+ P++ G N+ DT G
Sbjct: 64 VSPFQ--AEGLRPVMVSRTMGGFTINIIDTPG 93
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 28.5 bits (63), Expect = 3.9
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 24/160 (15%)
Query: 12 CVLV-GDGGTGKTTFVKRHLTGEFEKKYVATLG-VEVHPLVFHTNRGAIR---------F 60
+ + G GTGKT V + + + KK++ V ++ T +
Sbjct: 47 NIFIYGLTGTGKTAVV-KFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKV 105
Query: 61 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP----- 115
+ E + L G +I+ D K + L R+ +
Sbjct: 106 PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKIS 165
Query: 116 IVLCGNKVDIKDR---KVKA----KSIVFHRKKNLQYYDI 148
+ N V D +VK+ + I+F + DI
Sbjct: 166 FIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDI 205
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 28.5 bits (64), Expect = 3.9
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 195 RIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKR 243
+ Q L + + + + +AA + + V+ G GTGKTT V +
Sbjct: 136 LLAQTLDKLFPVS-DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAK 183
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 28.2 bits (64), Expect = 4.0
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 113 NIPIVLCGNKVD-IKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKL 167
P++L NKVD ++++ + F + L ISA++ N + + + L
Sbjct: 116 KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 28.2 bits (62), Expect = 4.7
Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 17/181 (9%)
Query: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRFNVWD-- 64
+ +G GTGKT +++ E E+ V+ A+ ++
Sbjct: 49 LFLGLTGTGKTFVS-KYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKL 107
Query: 65 -------TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWH-RDLVRVCENIPI 116
+ + AII D + + + L+R NI +
Sbjct: 108 TGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISV 167
Query: 117 VLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 176
++ N ++++D + YD + L + D L ++
Sbjct: 168 IMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYI 227
Query: 177 A 177
A
Sbjct: 228 A 228
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 27.9 bits (61), Expect = 6.3
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 10 FKCVLVGDGGTGKTTFVK---------RHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
F ++VG+ G GK+T + + +K T+ +E + +R
Sbjct: 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRL 97
Query: 61 NVWDTAGQE 69
V DT G
Sbjct: 98 TVVDTPGYG 106
Score = 27.9 bits (61), Expect = 6.3
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 225 FKCVLVGDGGTGKTTFVK---------RHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 275
F ++VG+ G GK+T + + +K T+ +E + +R
Sbjct: 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRL 97
Query: 276 NVWDTAGQE 284
V DT G
Sbjct: 98 TVVDTPGYG 106
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 26.9 bits (59), Expect = 8.3
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 7 MPSFKCVLVGDGGTGKTTFVKR 28
M + V+ G G G TT +
Sbjct: 1 MKNKVVVVTGVPGVGSTTSSQL 22
Score = 26.9 bits (59), Expect = 8.3
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 222 MPSFKCVLVGDGGTGKTTFVKR 243
M + V+ G G G TT +
Sbjct: 1 MKNKVVVVTGVPGVGSTTSSQL 22
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 27.1 bits (61), Expect = 9.2
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 112 ENIPIVLCGNKVDI--KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK 158
+ V+ NK+D+ +D K + + SAK+ E+
Sbjct: 114 NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEE 162
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 26.9 bits (59), Expect = 9.6
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 14 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 48
+VG +GKTT + R + ++ + V+ H
Sbjct: 7 IVGTSDSGKTTLITR-MMPILRERGLRVAVVKRHA 40
Score = 26.9 bits (59), Expect = 9.6
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 229 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 263
+VG +GKTT + R + ++ + V+ H
Sbjct: 7 IVGTSDSGKTTLITR-MMPILRERGLRVAVVKRHA 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.428
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,401,448
Number of extensions: 399966
Number of successful extensions: 1921
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1489
Number of HSP's successfully gapped: 344
Length of query: 385
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 290
Effective length of database: 4,049,298
Effective search space: 1174296420
Effective search space used: 1174296420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)