BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1250
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZV4|X Chain X, Structure Of The Regulator Of G-Protein Signaling 17
(Rgsz2)
Length = 158
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 56/81 (69%)
Query: 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
K+ + ++ R YI+ +VSLDSRVRE++NRN++ P+ H +++AQLQIYT
Sbjct: 73 KKEQNKKVIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYT 132
Query: 66 LMHRDSYPRFINSTVYKQLAQ 86
LMHRDS+PRF+NS +YK +
Sbjct: 133 LMHRDSFPRFLNSQIYKSFVE 153
>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein): A
Regulator Of G Protein Signaling
Length = 152
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 14 VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
V R Y++ +VSLDSRVRE +N+ M PS HTFD+AQLQIYTLMHRDSYP
Sbjct: 68 VDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYP 127
Query: 74 RFINSTVYKQLA-QLDSS 90
RF++S Y+ L +DSS
Sbjct: 128 RFLSSPTYRALLPWVDSS 145
>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|H Chain H, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
Length = 205
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+I+ + + +V+LDS RE +RNM+ P+ FDEAQ +I+ LM +DSY RF+ S Y L
Sbjct: 118 FISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL 177
Query: 85 AQLDSSPGDTGGNSDSSTPARKSSNAT 111
++P G + A+ S++ T
Sbjct: 178 ----TNPSSCGA--EKQKGAKSSADCT 198
>pdb|1EZT|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
pdb|1EZY|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
Length = 166
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+I+ + + +V+LDS RE +RNM+ P+ FDEAQ +I+ LM +DSY RF+ S Y L
Sbjct: 72 FISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL 131
Query: 85 AQLDSSPGDTGGNSDSSTPARKSSNAT 111
++P G A+ S++ T
Sbjct: 132 ----TNPSSCGAEKQKG--AKSSADCT 152
>pdb|2BV1|A Chain A, Regulator Of G-Protein Signalling 1 (Human)
pdb|2BV1|B Chain B, Regulator Of G-Protein Signalling 1 (Human)
pdb|2GTP|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 145
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 23 RPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK 82
+ ++++ + ++++D R RE + + +P+ FDEAQ IYTLM +DSYPRF+ S +Y
Sbjct: 78 KAFVHSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYL 137
Query: 83 QL 84
L
Sbjct: 138 NL 139
>pdb|2A72|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
pdb|2A72|B Chain B, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
Length = 146
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 34 VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGD 93
++LDS+ + N+ P +TF++AQ IY LM DSYPRFI S+ Y++L Q G+
Sbjct: 80 INLDSKSYDKTTHNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKSGN 139
Query: 94 T 94
+
Sbjct: 140 S 140
>pdb|2CRP|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signalling 5 (Rgs 5)
Length = 150
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+I T+ +V++D ++I +N+V PS +FD AQ +I+ LM +DS PRF+ S Y++L
Sbjct: 84 FIQTEAPKEVNIDHFTKDITMKNLVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQEL 143
>pdb|2JM5|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
pdb|2OWI|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
Length = 151
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+I T +V+LD +E++ ++ P+ H+FD AQ ++Y LM +DSY RF+ S +Y L
Sbjct: 70 FIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDL 129
Query: 85 AQ 86
+
Sbjct: 130 ME 131
>pdb|2DLV|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of
G-Protein Signaling 18
Length = 140
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+I T +V+LD +E++ ++ P+ H+FD AQ ++Y LM +DSY RF+ S +Y L
Sbjct: 74 FIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDL 133
>pdb|2IHD|A Chain A, Crystal Structure Of Human Regulator Of G-Protein
Signaling 8, Rgs8
Length = 155
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 12 GNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDS 71
+ S R +++ + +V++D + RE +N+ PS FD+AQ ++++LM +DS
Sbjct: 81 AKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDS 140
Query: 72 YPRFINSTVYKQL 84
YPRF+ S +Y L
Sbjct: 141 YPRFLRSKMYLDL 153
>pdb|2ODE|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
Length = 141
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 12 GNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDS 71
+ S R +++ + +V++D + RE +N+ PS FD+AQ ++++LM +DS
Sbjct: 60 AKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDS 119
Query: 72 YPRFINSTVYKQL 84
YPRF+ S +Y L
Sbjct: 120 YPRFLRSKMYLDL 132
>pdb|2D9J|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signaling 7
Length = 139
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 34 VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
++LDS+ + N+ P +TF++AQ IY LM DSYPRFI S+ Y++L
Sbjct: 82 INLDSKSYDKTTHNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQEL 132
>pdb|2OJ4|A Chain A, Crystal Structure Of Rgs3 Rgs Domain
Length = 127
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
K+ + + S ++ YI + +V+LDS RE N+ S + FD AQ +I+
Sbjct: 47 KKVKSQSKMASKAKKIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFG 106
Query: 66 LMHRDSYPRFINSTVYKQL 84
LM +DSYPRF+ S +Y L
Sbjct: 107 LMEKDSYPRFLRSDLYLDL 125
>pdb|3C7L|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7L|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 137
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
YI ++ +V++D RE+ N+ + + FD AQ + TLM +DSYPRF+ S Y+ L
Sbjct: 77 YIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDL 136
Query: 85 A 85
A
Sbjct: 137 A 137
>pdb|3C7K|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|D Chain D, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 129
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
YI ++ +V++D RE+ N+ + + FD AQ + TLM +DSYPRF+ S Y+ L
Sbjct: 69 YIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDL 128
Query: 85 A 85
A
Sbjct: 129 A 129
>pdb|2IK8|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 140
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+I ++ +V++D RE+ N+ + + FD AQ + TLM +DSYPRF+ S Y+ L
Sbjct: 71 FICSEAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRDL 130
>pdb|2BT2|A Chain A, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|B Chain B, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|C Chain C, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|D Chain D, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|E Chain E, Structure Of The Regulator Of G-Protein Signaling 16
Length = 161
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 14 VQSSKRRAARP------YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLM 67
++S+ + A+R +I ++ +V++D RE+ N+ + + FD AQ + TLM
Sbjct: 75 IRSATKLASRAHQIFEEFICSEAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLM 134
Query: 68 HRDSYPRFINSTVYKQL 84
+DSYPRF+ S Y+ L
Sbjct: 135 EKDSYPRFLKSPAYRDL 151
>pdb|2ES0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs6
Length = 148
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 34 VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
++LDS EI ++N+ +TF++AQ IY LM DSY RF+ S Y+ L
Sbjct: 78 INLDSHSYEITSQNVKDGGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDL 128
>pdb|2V4Z|B Chain B, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 142
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%)
Query: 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
K+ + S R+ +I + ++++D + + ++ +N+ ++ F AQ ++Y+
Sbjct: 53 KKTKSPQKLSSKARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYS 112
Query: 66 LMHRDSYPRFINSTVYKQLAQ 86
LM DSYPRF+ S Y+ L +
Sbjct: 113 LMENDSYPRFLKSEFYQDLCK 133
>pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|E Chain E, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|B Chain B, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|D Chain D, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 147
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 34 VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+++D + +I + + P + D AQ IY LM +DSY R++ S +YK++
Sbjct: 88 INIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 138
>pdb|4EKC|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|D Chain D, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 137
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%)
Query: 14 VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
+ S R+ +I + ++++D + + ++ +N+ ++ F AQ ++Y+LM +SYP
Sbjct: 62 LSSKARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYP 121
Query: 74 RFINSTVYKQLAQ 86
RF+ S Y+ L +
Sbjct: 122 RFLESEFYQDLCK 134
>pdb|2PBI|A Chain A, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|C Chain C, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 424
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 34 VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+++D + +I + + P + D AQ IY LM +DSY R++ S +YK++
Sbjct: 365 INIDGKTMDITVKGLRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 415
>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs2
Length = 146
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%)
Query: 14 VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
+ S R+ +I + ++++D + + ++ +N+ ++ F AQ ++Y+LM +SYP
Sbjct: 71 LSSKARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYP 130
Query: 74 RFINSTVYKQLAQ 86
RF+ S Y+ L +
Sbjct: 131 RFLESEFYQDLCK 143
>pdb|1FQI|A Chain A, Rgs9 Rgs Domain
Length = 147
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 34 VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 83
+++D + +I + + P + D AQ IY L +DSY R++ S +YK+
Sbjct: 88 INIDGKTXDITVKGLKHPHRYVLDAAQTHIYXLXKKDSYARYLKSPIYKE 137
>pdb|2EBZ|A Chain A, Solution Structure Of The Rgs Domain From Human Regulator
Of G-Protein Signaling 12 (Rgs12)
Length = 155
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ- 83
++ +K + V++DS+ ++ + + +P F E QLQI+ LM DSY RF+ S +Y++
Sbjct: 76 FLCSKATTPVNIDSQA-QLADDVLRAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQEC 134
Query: 84 -LAQLD 88
LA+++
Sbjct: 135 ILAEVE 140
>pdb|2JNU|A Chain A, Solution Structure Of The Rgs Domain Of Human Rgs14
Length = 154
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 48 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ--LAQLDSSPGDTGGNSDSSTP 103
+ P F QLQI+ LM DSY RF+ S +Y++ LA+ + P G+S +P
Sbjct: 94 LAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYRECLLAEAEGRPLREPGSSRLGSP 151
>pdb|2DLR|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of
G-Protein Signaling 10
Length = 149
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
K+ + +Q + ++++K S +V+++ + R + + + P F + Q QI+
Sbjct: 55 KKMQDKTQMQEKAKEIYMTFLSSKASSQVNVEGQSR-LNEKILEEPHPLMFQKLQDQIFN 113
Query: 66 LMHRDSYPRFINSTVY 81
LM DSY RF+ S ++
Sbjct: 114 LMKYDSYSRFLKSDLF 129
>pdb|2I59|A Chain A, Solution Structure Of Rgs10
Length = 138
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
K+ + +Q + ++++K S +V+++ + R + + + P F + Q QI+
Sbjct: 51 KKMQDKTQMQEKAKEIYMTFLSSKASSQVNVEGQSR-LNEKILEEPHPLMFQKLQDQIFN 109
Query: 66 LMHRDSYPRFINSTVY 81
LM DSY RF+ S ++
Sbjct: 110 LMKYDSYSRFLKSDLF 125
>pdb|2IHB|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 153
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
K+ + +Q + ++++K S +V+++ + R + + + P F + Q QI+
Sbjct: 71 KKMQDKTQMQEKAKEIYMTFLSSKASSQVNVEGQSR-LNEKILEEPHPLMFQKLQDQIFN 129
Query: 66 LMHRDSYPRFINSTVY 81
LM DSY RF+ S ++
Sbjct: 130 LMKYDSYSRFLKSDLF 145
>pdb|1DK8|A Chain A, Crystal Structure Of The Rgs-Homologous Domain Of Axin
Length = 147
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 38 SRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVY 81
S ++ + + ++ P+ FD+AQ +I M ++YP F+ S +Y
Sbjct: 93 SFIKGCIMKQLIDPA--MFDQAQTEIQATMEENTYPSFLKSDIY 134
>pdb|1EMU|A Chain A, Structure Of The Axin Rgs-Homologous Domain In Complex
With A Samp Repeat From Apc
Length = 132
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 38 SRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVY 81
S ++ + + ++ P+ FD+AQ +I M ++YP F+ S +Y
Sbjct: 87 SFIKGCIMKQLIDPA--MFDQAQTEIQATMEENTYPSFLKSDIY 128
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 9 GRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMH 68
G+ GNV ++ R ++ + K FK L+ E R V +H L++Y H
Sbjct: 23 GKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 82
Query: 69 RDSYPRFINS-----TVYKQLAQL 87
+ I TVY++L +L
Sbjct: 83 DATRVYLILEYAPLGTVYRELQKL 106
>pdb|2R5R|A Chain A, The Crystal Structure Of Duf198 From Nitrosomonas Europaea
Atcc 19718
Length = 271
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDS------YPRFINS 78
Y+N +FK + SR EI+N + S +F+E + + DS +P FIN
Sbjct: 57 YVNLPHNFKGTHXSRFVEILNSHEREISVESFEEILRSXVSRLESDSGHIEXAFPYFINK 116
Query: 79 T 79
+
Sbjct: 117 S 117
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 9 GRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMH 68
G+ GNV ++ R ++ + K FK L+ E R V +H L++Y H
Sbjct: 23 GKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 82
Query: 69 RDSYPRFINS-----TVYKQLAQL 87
+ I TVY++L +L
Sbjct: 83 DATRVYLILEYAPLGTVYRELQKL 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.125 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,957,366
Number of Sequences: 62578
Number of extensions: 94758
Number of successful extensions: 257
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 35
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)