Query psy1250
Match_columns 111
No_of_seqs 112 out of 636
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:53:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dlv_A RGS18, regulator of G-p 99.9 1E-22 3.5E-27 140.6 6.7 84 6-89 55-138 (140)
2 1fqi_A RGS9, regulator of G-pr 99.9 2E-22 6.7E-27 140.8 7.7 84 9-92 63-146 (147)
3 2oj4_A RGS3, regulator of G-pr 99.9 8.7E-23 3E-27 138.5 5.4 81 6-86 47-127 (127)
4 2dlr_A RGS10, regulator of G-p 99.9 8.1E-23 2.8E-27 142.8 5.0 86 6-92 55-140 (149)
5 1zv4_X RGS17, regulator of G-p 99.9 2.7E-22 9.3E-27 142.1 7.4 85 6-90 73-157 (158)
6 2jm5_A RGS18, regulator of G-p 99.9 2.2E-22 7.7E-27 141.0 6.7 84 6-89 51-134 (151)
7 2a72_A Regulator of G-protein 99.9 3.7E-22 1.3E-26 139.1 7.1 81 10-90 56-136 (146)
8 2crp_A RGS5, regulator of G-pr 99.9 3.3E-22 1.1E-26 139.9 6.6 84 6-89 65-148 (150)
9 3c7l_A Regulator of G-protein 99.9 2.5E-22 8.5E-27 138.8 5.6 80 6-85 58-137 (137)
10 2af0_A Regulator of G-protein 99.9 6.3E-22 2.1E-26 137.8 7.0 82 6-87 63-144 (146)
11 1cmz_A Protein (GAIP (G-alpha 99.9 2.7E-22 9.1E-27 140.5 4.7 85 6-90 60-144 (152)
12 2bv1_A Regulator of G-protein 99.9 1.2E-21 4.2E-26 136.3 7.8 78 11-88 66-143 (145)
13 2ihd_A RGS8, regulator of G-pr 99.8 7E-22 2.4E-26 139.4 5.9 81 6-86 75-155 (155)
14 2ebz_A RGS12, regulator of G-p 99.8 5.3E-21 1.8E-25 134.5 7.4 78 10-88 61-138 (155)
15 1dk8_A Axin; alpha-helix, PI-h 99.8 2.1E-21 7.1E-26 134.9 5.0 81 10-90 60-143 (147)
16 1agr_E RGS4; GI-alpha-1, hydro 99.8 2.4E-21 8.3E-26 143.0 4.9 85 6-90 99-183 (205)
17 2ihb_B Regulator of G-protein 99.8 1.4E-21 4.8E-26 137.2 2.8 82 6-88 71-152 (153)
18 2jnu_A RGS14, regulator of G-p 99.8 1.9E-21 6.4E-26 136.7 2.8 90 11-101 58-149 (154)
19 2pbi_A Regulator of G-protein 99.8 1.3E-19 4.5E-24 146.1 6.7 83 10-92 341-423 (424)
20 3cx8_B RHO guanine nucleotide 97.5 0.00022 7.7E-09 52.3 6.8 62 7-68 62-125 (203)
21 1iap_A Guanine nucleotide exch 96.3 0.0033 1.1E-07 46.3 4.0 43 6-48 43-85 (211)
22 3ab3_B RHO guanine nucleotide 95.2 0.0032 1.1E-07 47.3 -0.2 61 6-66 97-162 (246)
23 3v5w_A G-protein coupled recep 95.1 0.011 3.7E-07 50.2 2.9 80 9-88 96-178 (689)
24 4gou_A EHRGS-rhogef; RGS domai 94.3 0.068 2.3E-06 41.7 5.4 67 11-77 60-130 (518)
25 2acx_A G protein-coupled recep 88.3 0.83 2.8E-05 37.5 5.7 78 9-86 93-172 (576)
26 2elu_A Zinc finger protein 406 77.4 1.4 4.7E-05 23.3 1.8 19 2-20 13-31 (37)
27 3c4z_A Rhodopsin kinase; Ser/T 59.5 11 0.00038 30.4 4.5 73 12-87 101-174 (543)
28 3ct5_A Morphogenesis protein 1 34.7 40 0.0014 22.9 3.6 42 1-48 1-42 (159)
29 1xc0_A Pardaxin P-4, PA4; BEND 31.2 7.1 0.00024 19.9 -0.6 24 72-95 6-29 (33)
30 3sj5_A Methyl-accepting chemot 22.9 1E+02 0.0035 21.3 4.0 38 50-88 61-98 (188)
No 1
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1e-22 Score=140.56 Aligned_cols=84 Identities=30% Similarity=0.543 Sum_probs=78.8
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
|+..+..++...|+.||++||.++||.+||||+.+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.+++
T Consensus 55 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r~~i~~~l~~p~~~~F~~aq~~V~~~m~~d~~~rFl~S~~y~~~l 134 (140)
T 2dlv_A 55 KKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLM 134 (140)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTSSSSTTCCCCCHHHHHHHHHGGGSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHCCCCCccccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcchhhccCHHHHHHH
Confidence 55555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q psy1250 86 QLDS 89 (111)
Q Consensus 86 ~~~~ 89 (111)
+..+
T Consensus 135 ~~~~ 138 (140)
T 2dlv_A 135 SGPS 138 (140)
T ss_dssp CCSS
T ss_pred Hhcc
Confidence 8764
No 2
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Probab=99.87 E-value=2e-22 Score=140.77 Aligned_cols=84 Identities=24% Similarity=0.491 Sum_probs=78.4
Q ss_pred CChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhc
Q psy1250 9 GRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLD 88 (111)
Q Consensus 9 ~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~ 88 (111)
.+.+++...|+.||++||+++||.+||||+.+|+.|.+++..|++++||.||.+|+.+|+.|+||||++|+.|.++++..
T Consensus 63 ~~~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~ 142 (147)
T 1fqi_A 63 GDQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKA 142 (147)
T ss_dssp SCGGGHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHHTHHHHHTSHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCcccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcHHHHhcCHHHHHHHHHh
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999987
Q ss_pred CCCC
Q psy1250 89 SSPG 92 (111)
Q Consensus 89 ~~~~ 92 (111)
..|.
T Consensus 143 ~~p~ 146 (147)
T 1fqi_A 143 IEPQ 146 (147)
T ss_dssp CCC-
T ss_pred hCCC
Confidence 6653
No 3
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}
Probab=99.87 E-value=8.7e-23 Score=138.52 Aligned_cols=81 Identities=35% Similarity=0.543 Sum_probs=76.4
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
|+..+.+++...|+.||++||+++||.+||||+.+|+.|.+.+..|++++||.||.+|+.+|+.|+||||++|+.|.+++
T Consensus 47 k~~~~~~~~~~~a~~I~~~yi~~~s~~evni~~~~r~~i~~~l~~~~~~~F~~aq~~v~~~m~~d~~~rFl~S~~y~~~l 126 (127)
T 2oj4_A 47 KKVKSQSKMASKAKKIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLI 126 (127)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHTTSSCCTTTTHHHHHHHHHHHHHTHHHHHHHSHHHHTTT
T ss_pred hcCCCHHHHHHHHHHHHHHHccCCCCcCccCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhhhccCHHHHHHh
Confidence 55667788999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred H
Q psy1250 86 Q 86 (111)
Q Consensus 86 ~ 86 (111)
+
T Consensus 127 ~ 127 (127)
T 2oj4_A 127 N 127 (127)
T ss_dssp C
T ss_pred C
Confidence 3
No 4
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=8.1e-23 Score=142.85 Aligned_cols=86 Identities=22% Similarity=0.400 Sum_probs=79.1
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
|+..+..++...|+.||++||.++||.+|||+..+|. +...+..|++++||.||.+|+.+|+.|+||||++|+.|.+++
T Consensus 55 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~-~~~~~~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l 133 (149)
T 2dlr_A 55 KKMQDKTQMQEKAKEIYMTFLSSKASSQVNVEGQSRL-NEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKHK 133 (149)
T ss_dssp HHHCCHHHHHHHHHHHHTTTSSTTCSSCCCCSCGGGC-CHHHHHSCCTTHHHHHHHHHHHHHHHTTHHHHHHSHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHcCCCCCccccCCHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHhcCHHHHHHH
Confidence 5556677899999999999999999999999999998 888888899999999999999999999999999999999999
Q ss_pred HhcCCCC
Q psy1250 86 QLDSSPG 92 (111)
Q Consensus 86 ~~~~~~~ 92 (111)
+..+.+.
T Consensus 134 ~~~~~~~ 140 (149)
T 2dlr_A 134 RTEEEEE 140 (149)
T ss_dssp HHHSCCC
T ss_pred Hhhcccc
Confidence 9876643
No 5
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens}
Probab=99.86 E-value=2.7e-22 Score=142.05 Aligned_cols=85 Identities=45% Similarity=0.785 Sum_probs=78.6
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
|+..+++++...|+.||++||.++||.+||||..+|+.|.+.+..|++++|+.||.+|+.+|+.|+||||++|+.|.+++
T Consensus 73 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~lm~~d~fprFl~S~~y~~~l 152 (158)
T 1zv4_X 73 KKEQNKKVIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSFV 152 (158)
T ss_dssp HHCCSHHHHHHHHHHHHHHHTCCC-CCCCCCCHHHHHHHHHTTSSCCTTTTHHHHHHHHHHHHHTTHHHHTTSHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHCCCCCCceeecCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHChHHhHhcCHHHHHHH
Confidence 55667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC
Q psy1250 86 QLDSS 90 (111)
Q Consensus 86 ~~~~~ 90 (111)
+..+.
T Consensus 153 ~~~~~ 157 (158)
T 1zv4_X 153 ESTAG 157 (158)
T ss_dssp HHHC-
T ss_pred HHhcC
Confidence 97653
No 6
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Probab=99.86 E-value=2.2e-22 Score=141.02 Aligned_cols=84 Identities=29% Similarity=0.543 Sum_probs=79.9
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
|+..+..++...|+.||++||.++||.+||||+.+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.+++
T Consensus 51 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l 130 (151)
T 2jm5_A 51 KKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLM 130 (151)
T ss_dssp HTCCCHHHHHHHHHHHHHHTTCSSSSSCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHccCcchhhcCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHhHhcCHHHHHHH
Confidence 55666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q psy1250 86 QLDS 89 (111)
Q Consensus 86 ~~~~ 89 (111)
+..+
T Consensus 131 ~~~~ 134 (151)
T 2jm5_A 131 EGRP 134 (151)
T ss_dssp TSCC
T ss_pred HHhc
Confidence 9876
No 7
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A
Probab=99.86 E-value=3.7e-22 Score=139.09 Aligned_cols=81 Identities=32% Similarity=0.518 Sum_probs=74.9
Q ss_pred ChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhcC
Q psy1250 10 RRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS 89 (111)
Q Consensus 10 ~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~~ 89 (111)
..+++...|..||++||.++||.+||||+.+|+.|..++..|++++||+||.+|+.+|+.|+||||++|+.|.++++..+
T Consensus 56 ~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~ 135 (146)
T 2a72_A 56 PIKEVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTHNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKK 135 (146)
T ss_dssp CGGGHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHHHSTTTTTTHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHcCCCCcccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhChhHhHhcCHHHHHHHHHhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q psy1250 90 S 90 (111)
Q Consensus 90 ~ 90 (111)
.
T Consensus 136 ~ 136 (146)
T 2a72_A 136 K 136 (146)
T ss_dssp -
T ss_pred c
Confidence 4
No 8
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.3e-22 Score=139.86 Aligned_cols=84 Identities=31% Similarity=0.501 Sum_probs=79.1
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
|+..+.+++...|+.||++||.++||.+||||+.+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.+++
T Consensus 65 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l 144 (150)
T 2crp_A 65 KKIKSPAKMAEKAKQIYEEFIQTEAPKEVNIDHFTKDITMKNLVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQELI 144 (150)
T ss_dssp HTCCCTTHHHHHHHHHHHHTSSTTCSSCCSCCHHHHHHHHHTTSSCSSGGGHHHHHHHHHHHHHTHHHHHHHSHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHHHHccCCCCccCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 55666678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q psy1250 86 QLDS 89 (111)
Q Consensus 86 ~~~~ 89 (111)
+..+
T Consensus 145 ~~~~ 148 (150)
T 2crp_A 145 SGPS 148 (150)
T ss_dssp SSSS
T ss_pred HHcc
Confidence 8764
No 9
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=99.86 E-value=2.5e-22 Score=138.80 Aligned_cols=80 Identities=33% Similarity=0.539 Sum_probs=75.6
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
|+..+.+++...|+.||++||+++||.+||||..+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.++|
T Consensus 58 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~~~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l 137 (137)
T 3c7l_A 58 KKIRSATKLASRAHHIFDEYIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDLA 137 (137)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHTTHHHHHHTSHHHHTTC
T ss_pred hccCCHHHHHHHHHHHHHHHCCCCCCccCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHChhHhhCcCHHHHHhC
Confidence 56666788999999999999999999999999999999999999999999999999999999999999999999999864
No 10
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B*
Probab=99.86 E-value=6.3e-22 Score=137.75 Aligned_cols=82 Identities=24% Similarity=0.533 Sum_probs=77.6
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
|+..+.+++...|+.||++||+++||.+||||+.+|+.|.+.+..|++++|++||.+|+.+|+.|+||||++|+.|.+++
T Consensus 63 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~~~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l 142 (146)
T 2af0_A 63 KKTKSPQKLSSKARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLC 142 (146)
T ss_dssp HTCCCHHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHGGGCCTTTTHHHHHHHHHHHHHTHHHHHHHSHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHCcCCCCcccCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHhHccCHHHHHHH
Confidence 55566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh
Q psy1250 86 QL 87 (111)
Q Consensus 86 ~~ 87 (111)
+.
T Consensus 143 ~~ 144 (146)
T 2af0_A 143 KK 144 (146)
T ss_dssp CC
T ss_pred hc
Confidence 75
No 11
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1
Probab=99.85 E-value=2.7e-22 Score=140.47 Aligned_cols=85 Identities=49% Similarity=0.720 Sum_probs=76.5
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
|+..+.+.+...|+.||++||.++||.+|||++.+|+.|.+.+..|++++||.||.+|+.+|+.|+||||++|+.|.+++
T Consensus 60 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l 139 (152)
T 1cmz_A 60 KAEANQHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRALL 139 (152)
T ss_dssp GGTCCSHHHHHHHHHHHHHTTTCSSSCCCSCCSHHHHHHHHHSSSCCTTSTHHHHHHHHHHHHHHTHHHHTTCHHHHTTC
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCceeeCCHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHChHHhHhcCHHHHHHH
Confidence 56666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC
Q psy1250 86 QLDSS 90 (111)
Q Consensus 86 ~~~~~ 90 (111)
+..+.
T Consensus 140 ~~~~~ 144 (152)
T 1cmz_A 140 PWVDS 144 (152)
T ss_dssp -----
T ss_pred HHhCC
Confidence 97764
No 12
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Probab=99.85 E-value=1.2e-21 Score=136.31 Aligned_cols=78 Identities=31% Similarity=0.553 Sum_probs=74.3
Q ss_pred hhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhc
Q psy1250 11 RGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLD 88 (111)
Q Consensus 11 ~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~ 88 (111)
..++...|+.||++||.++||.+||||+.+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.++++..
T Consensus 66 ~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~ 143 (145)
T 2bv1_A 66 SDLLPCKAEEIYKAFVHSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNLLNDL 143 (145)
T ss_dssp GGGHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHHTSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHCCCCCCcccCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhChhhhhccCHHHHHHHHHh
Confidence 345899999999999999999999999999999999999999999999999999999999999999999999999864
No 13
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A
Probab=99.85 E-value=7e-22 Score=139.43 Aligned_cols=81 Identities=31% Similarity=0.548 Sum_probs=75.9
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
|+..+.+++...|+.||++||+++||.+||||..+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.+++
T Consensus 75 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNI~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~f~rFl~S~~y~~~l 154 (155)
T 2ihd_A 75 KKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLL 154 (155)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHTTC
T ss_pred hccCCHHHHHHHHHHHHHHHCcCCCccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhChhHhhccCHHHHHHH
Confidence 55666788999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred H
Q psy1250 86 Q 86 (111)
Q Consensus 86 ~ 86 (111)
+
T Consensus 155 ~ 155 (155)
T 2ihd_A 155 S 155 (155)
T ss_dssp -
T ss_pred C
Confidence 3
No 14
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.3e-21 Score=134.52 Aligned_cols=78 Identities=27% Similarity=0.507 Sum_probs=71.2
Q ss_pred ChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhc
Q psy1250 10 RRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLD 88 (111)
Q Consensus 10 ~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~ 88 (111)
+.+++...|+.||++||.++||.+|||++.+| .+...+..|++++||+||.+|+.+|+.|+||||++|+.|.+++...
T Consensus 61 ~~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r-~~~~~~~~p~~~~Fd~aq~~V~~lm~~d~~~rFl~S~~y~~~l~~~ 138 (155)
T 2ebz_A 61 DKKELSYRAREIFSKFLCSKATTPVNIDSQAQ-LADDVLRAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQECILAE 138 (155)
T ss_dssp CHHHHHHHHHHHHHHHSSSSCSSCCSSCGGGC-HHHHHHHSCCTTHHHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCccCCCHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHChhHHHhhCHHHHHHHHHH
Confidence 45678999999999999999999999999987 5566666899999999999999999999999999999999998854
No 15
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Probab=99.83 E-value=2.1e-21 Score=134.92 Aligned_cols=81 Identities=20% Similarity=0.345 Sum_probs=75.7
Q ss_pred ChhhHHHHHHHhHHHHh-CCCCCccccCCHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHH
Q psy1250 10 RRGNVQSSKRRAARPYI-NTKQSFKVSLDSRVREIVNRNMV--SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 86 (111)
Q Consensus 10 ~~~~l~~~A~~Iy~~yi-~~~a~~eVNI~~~~r~~i~~~l~--~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~ 86 (111)
+.+++...|+.||++|| .++||.+||||+.+|..|.+.+. .|++++||+||.+|+.+|+.|+||||++|+.|.++++
T Consensus 60 ~~~~~~~~a~~Iy~~yi~~~~s~~~vni~~~~r~~i~~~l~~~~~~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~ 139 (147)
T 1dk8_A 60 NEEKRLKLARAIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQLIDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTR 139 (147)
T ss_dssp SHHHHHHHHHHHHHHHTSCTTSHHHHHSCHHHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHTHHHHHTTSHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccccccCHHHHHHHH
Confidence 55688999999999999 99999999999999999999995 5899999999999999999999999999999999998
Q ss_pred hcCC
Q psy1250 87 LDSS 90 (111)
Q Consensus 87 ~~~~ 90 (111)
..+.
T Consensus 140 ~~~~ 143 (147)
T 1dk8_A 140 TGSE 143 (147)
T ss_dssp SCCC
T ss_pred hccc
Confidence 7754
No 16
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A
Probab=99.83 E-value=2.4e-21 Score=142.99 Aligned_cols=85 Identities=34% Similarity=0.563 Sum_probs=75.8
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
|+..+.+++...|+.||++||.++||.+||||+.+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.+++
T Consensus 99 k~~~~~~~~~~~A~~Iy~~YI~~~Sp~evNI~~~~r~~i~~~l~~p~~~lFd~aq~~V~~lM~~d~fprFl~S~~Y~~~l 178 (205)
T 1agr_E 99 KKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLT 178 (205)
T ss_dssp HHCCCTTTHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHTHHHHHTTSHHHHTCC
T ss_pred hccCCHHHHHHHHHHHHHHHCCCCCchhhhccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHhcCHHHHHHH
Confidence 45555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC
Q psy1250 86 QLDSS 90 (111)
Q Consensus 86 ~~~~~ 90 (111)
+..+.
T Consensus 179 ~~~~~ 183 (205)
T 1agr_E 179 NPSSC 183 (205)
T ss_dssp -----
T ss_pred Hhhcc
Confidence 97764
No 17
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A
Probab=99.83 E-value=1.4e-21 Score=137.19 Aligned_cols=82 Identities=23% Similarity=0.423 Sum_probs=61.9
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
|+..+..++...|+.||++||.++||.+|||+..+|. +...+..|++++||.||.+|+.+|+.|+||||++|+.|.+++
T Consensus 71 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~-~~~~~~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l 149 (153)
T 2ihb_B 71 KKMQDKTQMQEKAKEIYMTFLSSKASSQVNVEGQSRL-NEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKHK 149 (153)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTSTTCTTCCCCCC------------CCTTTTHHHHHHHHHHHHHTHHHHHTTSTTTC---
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCCCccCCCCHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHChHHhhccCHHHHHHH
Confidence 5566677899999999999999999999999999998 777777899999999999999999999999999999999999
Q ss_pred Hhc
Q psy1250 86 QLD 88 (111)
Q Consensus 86 ~~~ 88 (111)
+.+
T Consensus 150 ~~~ 152 (153)
T 2ihb_B 150 RTE 152 (153)
T ss_dssp ---
T ss_pred hcc
Confidence 865
No 18
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-21 Score=136.71 Aligned_cols=90 Identities=23% Similarity=0.424 Sum_probs=70.1
Q ss_pred hhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhc--
Q psy1250 11 RGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLD-- 88 (111)
Q Consensus 11 ~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~-- 88 (111)
..++...|+.||++||+++||.+||||+.+| ....++..|++++||+||.+|+.+|+.|+||||++|+.|.+++...
T Consensus 58 ~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r-~~~~~~~~p~~~~Fd~aq~~V~~lm~~d~~~rFl~S~~y~~~l~~~~e 136 (154)
T 2jnu_A 58 TQQLAQEARNIYQEFLSSQALSPVNIDRQAW-LGEEVLAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYRECLLAEAE 136 (154)
T ss_dssp HHHHHHHHHHHHHHHTSTTCSSCCCSCCTTC-CCHHHHHSCCTTTTHHHHHHHHHHHHTTHHHHHTTSTTHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccCCcHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHhChhHhhccCHHHHHHHHHHhc
Confidence 4678999999999999999999999999997 3445666899999999999999999999999999999999999854
Q ss_pred CCCCCCCCCCCCC
Q psy1250 89 SSPGDTGGNSDSS 101 (111)
Q Consensus 89 ~~~~~~~~~~~~~ 101 (111)
+.+..+++.+-++
T Consensus 137 ~~p~~~~~~~~~~ 149 (154)
T 2jnu_A 137 GRPLREPGSSRLG 149 (154)
T ss_dssp -------------
T ss_pred CCCCCCCccccCC
Confidence 3444444443333
No 19
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.78 E-value=1.3e-19 Score=146.10 Aligned_cols=83 Identities=23% Similarity=0.469 Sum_probs=78.6
Q ss_pred ChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhcC
Q psy1250 10 RRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS 89 (111)
Q Consensus 10 ~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~~ 89 (111)
+.+++...|+.||++||+++||.+||||+.+|+.|.+++..|++++||+||.+|+.+|+.|+||||++|+.|.++++...
T Consensus 341 ~~~~~~~~A~~Iy~~YI~~~Sp~eVNId~~~r~~i~~~l~~P~~~lFd~AQ~~V~~lM~~DsyprFl~S~~Y~~~Lq~~~ 420 (424)
T 2pbi_A 341 DQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAI 420 (424)
T ss_dssp CSSSHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHHHHHCB
T ss_pred CHHHHHHHHHHHHHHHcCCCCccccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhCchHhHhcCHHHHHHHHHcc
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q psy1250 90 SPG 92 (111)
Q Consensus 90 ~~~ 92 (111)
.|.
T Consensus 421 ~p~ 423 (424)
T 2pbi_A 421 EPQ 423 (424)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 20
>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction, protein complex, GTP-binding, lipoprotein, membrane, nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus} PDB: 3cx6_B* 3cx7_B* 1htj_F
Probab=97.54 E-value=0.00022 Score=52.35 Aligned_cols=62 Identities=8% Similarity=0.152 Sum_probs=53.4
Q ss_pred cCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHh
Q psy1250 7 RAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMV--SPSNHTFDEAQLQIYTLMH 68 (111)
Q Consensus 7 k~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~--~p~~~~Fd~AQ~~I~~lMe 68 (111)
+..+.+++...|.+||.+||.++||..|++|..+-..|...|. +....+|.++|+.+...+.
T Consensus 62 k~~~~Ke~rk~a~ei~stFL~~~ApL~v~vp~~~~~eid~~L~~ee~~R~~f~~~q~~~~~~I~ 125 (203)
T 3cx8_B 62 QQTNPKDSRSLGKDIWNIFLEKNAPLRVKIPEMLQAEIDLRLRNNEDPRNVLCEAQEAVMLEIQ 125 (203)
T ss_dssp HTSCTTTCHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4457888999999999999999999999999999999999886 4568899998887776553
No 21
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=96.35 E-value=0.0033 Score=46.34 Aligned_cols=43 Identities=7% Similarity=0.055 Sum_probs=39.0
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHh
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNM 48 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l 48 (111)
-+.++.++++..|.+||..||.++||..|++|..+-.+|....
T Consensus 43 Yk~~~~Ke~rk~~~Ei~stFL~~~ApL~v~v~e~i~~eiD~~r 85 (211)
T 1iap_A 43 LGSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPNVAFELDRTR 85 (211)
T ss_dssp HTTSCHHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHTTCC
T ss_pred HhccChHHHHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Confidence 3566889999999999999999999999999999999998773
No 22
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction, protein complex, GTP-binding, membrane, transducer, lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo sapiens} PDB: 1shz_C*
Probab=95.18 E-value=0.0032 Score=47.33 Aligned_cols=61 Identities=7% Similarity=0.011 Sum_probs=37.1
Q ss_pred ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcC-----CChHHHHHHHHHHHHH
Q psy1250 6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVS-----PSNHTFDEAQLQIYTL 66 (111)
Q Consensus 6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~-----p~~~~Fd~AQ~~I~~l 66 (111)
-|..+.+++++.|.+||..||.++||..|++|..+-..|.+.+.+ .....|-+||+.+...
T Consensus 97 Yk~~~~Ke~Rk~a~Ei~stFL~~~ApL~v~v~e~ia~eID~~r~~~~~ee~~R~~~~~~r~~~~~e 162 (246)
T 3ab3_B 97 LGSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPNVAFELDRTRADLISEDVQRRFVQEVVQSQQVA 162 (246)
T ss_dssp HC-------CCTTHHHHHHTTSTTCTTCCCCCTTGGGC------------CHHHHHHHHHHTTHHH
T ss_pred HhccChHHHHHHHHHHHHHHcCCCCCccccCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999999999999999999888887642 2345566665544433
No 23
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=95.14 E-value=0.011 Score=50.20 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=65.8
Q ss_pred CChhhHHHHHHHhHHHHhCCCCCc-cccCCHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250 9 GRRGNVQSSKRRAARPYINTKQSF-KVSLDSRVREIVNRNMV--SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 85 (111)
Q Consensus 9 ~~~~~l~~~A~~Iy~~yi~~~a~~-eVNI~~~~r~~i~~~l~--~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l 85 (111)
.+.++....++.||++||.+++.. .-.++......+.+.+. .+++++|....+.|...|..+.|..|+.|..|..++
T Consensus 96 ~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~l~~~~f~~~~~s~~~~r~~ 175 (689)
T 3v5w_A 96 ETEEERVARSREIFDSYIMKELLACSHPFSKSATEHVQGHLGKKQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTRFC 175 (689)
T ss_dssp CSHHHHHHHHHHHHTSHHHHHHHSSSSCCCHHHHHHHHHHHHTTCCCTTTTHHHHHHHHHHHTTHHHHHHHHSHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhcchhhhhccCccchHHHHHHHHhhhhccCChHHHHHHHHHHHHHhccCcccccccChhHHHHH
Confidence 345667788999999999876532 33578888888887764 578899999999999999999999999999999888
Q ss_pred Hhc
Q psy1250 86 QLD 88 (111)
Q Consensus 86 ~~~ 88 (111)
+..
T Consensus 176 q~k 178 (689)
T 3v5w_A 176 QWK 178 (689)
T ss_dssp HHH
T ss_pred hcc
Confidence 754
No 24
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=94.33 E-value=0.068 Score=41.66 Aligned_cols=67 Identities=15% Similarity=0.274 Sum_probs=55.9
Q ss_pred hhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHhhCccccccc
Q psy1250 11 RGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMV----SPSNHTFDEAQLQIYTLMHRDSYPRFIN 77 (111)
Q Consensus 11 ~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~----~p~~~~Fd~AQ~~I~~lMe~D~yprFl~ 77 (111)
++...+...-|-++|+..++.++||++.++.+.|...+. +.+.++|.+|.+.-..|+-.+.|.-|++
T Consensus 60 pkvrlealnfikdqfldrnserqvnlsyqiqqsilkklsevtsnapkdvfneakkateyllyteqytyfin 130 (518)
T 4gou_A 60 PKVRLEALNFIKDQFLDRNSERQVNLSYQIQQSILKKLSEVTSNAPKDVFNEAKKATEYLLYTEQYTYFIN 130 (518)
T ss_dssp HHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHHHTCCSSCCTTTTHHHHHHHHHHHHHHTHHHHHH
T ss_pred chhhHHHHHhHHHHhhcccchhhcchhHHHHHHHHHHHHHHhcCCChHHHHHHHhhhHHhhhHHHHHHHHH
Confidence 333444567788999999999999999999999999985 4678999999999999998888877764
No 25
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=88.26 E-value=0.83 Score=37.54 Aligned_cols=78 Identities=8% Similarity=0.213 Sum_probs=62.1
Q ss_pred CChhhHHHHHHHhHHHHhCCCCCcccc-CCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHH
Q psy1250 9 GRRGNVQSSKRRAARPYINTKQSFKVS-LDSRVREIVNRNMV-SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 86 (111)
Q Consensus 9 ~~~~~l~~~A~~Iy~~yi~~~a~~eVN-I~~~~r~~i~~~l~-~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~ 86 (111)
.+.++....|..|+++|+.++++..+. |+..+...+...+. .+..++|......+...+....|..|+.+..+..+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~~~~~~~ 172 (576)
T 2acx_A 93 TPDDKRKACGRNLTQNFLSHTGPDLIPEVPRQLVTNCTQRLEQGPCKDLFQELTRLTHEYLSVAPFADYLDSIYFNRFLQ 172 (576)
T ss_dssp SCTTTHHHHHHHHHHHHSCSSSCCSSTTCCHHHHHHHHHHHHHCCCTTTTHHHHHHHHHHHTTHHHHHHHTSHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCcccccccccCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHhhccCcchhhcchhhhhhhhh
Confidence 445677888999999999999875443 78888777666665 6788999999999999888777888888887776665
No 26
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=77.44 E-value=1.4 Score=23.25 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=14.6
Q ss_pred ccccccCCChhhHHHHHHH
Q psy1250 2 IFCTKRAGRRGNVQSSKRR 20 (111)
Q Consensus 2 ~~~~kk~~~~~~l~~~A~~ 20 (111)
-||+||+.+-..+....++
T Consensus 13 rfckkkysdvknlikhire 31 (37)
T 2elu_A 13 RFCKKKYSDVKNLIKHIRD 31 (37)
T ss_dssp TTTTEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4999999998887665543
No 27
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=59.51 E-value=11 Score=30.45 Aligned_cols=73 Identities=11% Similarity=0.210 Sum_probs=50.2
Q ss_pred hhHHHHHHHhHHHHhCCCCCcccc-CCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHh
Q psy1250 12 GNVQSSKRRAARPYINTKQSFKVS-LDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQL 87 (111)
Q Consensus 12 ~~l~~~A~~Iy~~yi~~~a~~eVN-I~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~ 87 (111)
++....|+.|++.|+..++.-.+. ++......+.. ....++|.+....++..+....++.|+.|..+..+++.
T Consensus 101 ~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~v~~v~~---~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 174 (543)
T 3c4z_A 101 ALRPQKAQALRAAYLEPQAQLFCSFLDAETVARARA---GAGDGLFQPLLRAVLAHLGQAPFQEFLDSLYFLRFLQW 174 (543)
T ss_dssp TTHHHHHHHHHHHHTSTTCTTCCTTSCHHHHHHHHC---C---CTTHHHHHHHHHHHTTHHHHHHHTSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhCchhhhhhccCCHHHHhhhhc---CCCchhhHHHHHHHHHhhhcCchHhhhhhhhhhhhhhh
Confidence 456778899999999998643222 34444333322 23455788888889999988889999999888877753
No 28
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=34.67 E-value=40 Score=22.89 Aligned_cols=42 Identities=7% Similarity=0.027 Sum_probs=32.2
Q ss_pred CccccccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHh
Q psy1250 1 MIFCTKRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNM 48 (111)
Q Consensus 1 ~~~~~kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l 48 (111)
|.+-.....+.+++...|+.||+.+...| ++..--..|..++
T Consensus 1 ~~~~~~~~~t~~~~~~~a~~i~~~l~~~G------~s~~~aAGilGN~ 42 (159)
T 3ct5_A 1 MVYVSNKYLTMSEMKVNAQYILNYLSSNG------WTKQAICGMLGNM 42 (159)
T ss_dssp CCCCSSSCCCHHHHHHHHHHHHHHHHTTT------CCHHHHHHHHHHH
T ss_pred CeeecCCCCCHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHH
Confidence 67777889999999999999999998754 4444555555554
No 29
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=31.22 E-value=7.1 Score=19.86 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=18.6
Q ss_pred cccccccHHHHHHHHhcCCCCCCC
Q psy1250 72 YPRFINSTVYKQLAQLDSSPGDTG 95 (111)
Q Consensus 72 yprFl~S~~Y~~~l~~~~~~~~~~ 95 (111)
.|..+.|++|+.++..++....++
T Consensus 6 ipkiissplfktllsavgsalsss 29 (33)
T 1xc0_A 6 IPKIISSPLFKTLLSAVGSALSSS 29 (33)
T ss_dssp HHHHTTTTTHHHHHHHHHHHTTTT
T ss_pred hhHHHccHHHHHHHHHHHHHhhcc
Confidence 467789999999999988655443
No 30
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=22.92 E-value=1e+02 Score=21.26 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhc
Q psy1250 50 SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLD 88 (111)
Q Consensus 50 ~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~ 88 (111)
.+..+++...=+..+..+... ||++++-..+.++|...
T Consensus 61 ~~~~~ll~~fG~~~~~~~~~~-y~~~l~g~~~~dFL~~l 98 (188)
T 3sj5_A 61 KNVNEIWREVGRQNIKTFSEW-FPSYFAGRRLVNFLMMM 98 (188)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-CGGGTTTCCHHHHHHTH
T ss_pred cCHHHHHHHHHHHHHHHHHHh-HHHHhCCCCHHHHHHHH
Confidence 567788888888888877666 99999988888887743
Done!