RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1250
(111 letters)
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 140
Score = 73.1 bits (179), Expect = 4e-18
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+I T +V+LD +E++ ++ P+ H+FD AQ ++Y LM +DSY RF+ S +Y L
Sbjct: 74 FIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDL 133
Query: 85 AQLDSS 90
SS
Sbjct: 134 MSGPSS 139
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase
activating protein, heterotrimeric G-protein,
lipoprotein, palmitate, phosphoprotein; 1.89A {Mus
musculus} PDB: 3c7k_B* 2ik8_B*
Length = 137
Score = 72.3 bits (177), Expect = 7e-18
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
YI ++ +V++D RE+ N+ + + FD AQ + TLM +DSYPRF+ S Y+ L
Sbjct: 77 YIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDL 136
Query: 85 A 85
A
Sbjct: 137 A 137
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural
genomics, struct genomics consortium, B-cell activation,
phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Length = 145
Score = 71.5 bits (175), Expect = 2e-17
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
++++ + ++++D R RE + + +P+ FDEAQ IYTLM +DSYPRF+ S +Y L
Sbjct: 80 FVHSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNL 139
Query: 85 AQ 86
Sbjct: 140 LN 141
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics,
structural genomics consortium, SGC, signaling protein;
2.30A {Homo sapiens} PDB: 2v4z_B*
Length = 146
Score = 71.6 bits (175), Expect = 2e-17
Identities = 17/62 (27%), Positives = 38/62 (61%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+I + ++++D + + ++ +N+ ++ F AQ ++Y+LM +SYPRF+ S Y+ L
Sbjct: 82 FIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDL 141
Query: 85 AQ 86
+
Sbjct: 142 CK 143
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human
RGS17(Z2), regulator of G-protein signali opioid
receptor interacting protein; 2.40A {Homo sapiens}
Length = 158
Score = 70.8 bits (173), Expect = 5e-17
Identities = 36/62 (58%), Positives = 50/62 (80%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
YI+ +VSLDSRVRE++NRN++ P+ H +++AQLQIYTLMHRDS+PRF+NS +YK
Sbjct: 92 YISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSF 151
Query: 85 AQ 86
+
Sbjct: 152 VE 153
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD,
GAP, signaling protein; 1.94A {Bos taurus} SCOP:
a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Length = 147
Score = 70.5 bits (172), Expect = 6e-17
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
++ +++D + +I + + P + D AQ IY LM +DSY R++ S +YK++
Sbjct: 79 FLAPGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 138
Query: 85 AQLDSSP 91
P
Sbjct: 139 LAKAIEP 145
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain,
signaling protein inhibitor; 2.30A {Homo sapiens}
Length = 127
Score = 69.6 bits (170), Expect = 6e-17
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
YI + +V+LDS RE N+ S + FD AQ +I+ LM +DSYPRF+ S +Y L
Sbjct: 66 YIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDL 125
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of
G-protein signaling 7, GTPase-activ proteins (GAP),
structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A
2es0_A
Length = 146
Score = 69.7 bits (170), Expect = 1e-16
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
++ ++LDS+ + N+ P +TF++AQ IY LM DSYPRFI S+ Y++L
Sbjct: 71 FLAPGAPSAINLDSKSYDKTTHNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQEL 130
Query: 85 AQLDSSPGDTGGNSDS 100
Q G++ S
Sbjct: 131 LQAKKKSGNSMDRRTS 146
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal
transduction/regulator), GTP-binding, GTPase activating
protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP:
a.91.1.1 PDB: 1ezt_A 1ezy_A
Length = 205
Score = 70.6 bits (172), Expect = 2e-16
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+I+ + + +V+LDS RE +RNM+ P+ FDEAQ +I+ LM +DSY RF+ S Y L
Sbjct: 118 FISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL 177
Query: 85 AQLDSSPGDTGGNSDSSTP 103
S + + SS
Sbjct: 178 TNPSSCGAEKQKGAKSSAD 196
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 150
Score = 69.3 bits (169), Expect = 2e-16
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+I T+ +V++D ++I +N+V PS +FD AQ +I+ LM +DS PRF+ S Y++L
Sbjct: 84 FIQTEAPKEVNIDHFTKDITMKNLVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQEL 143
Query: 85 AQLDSS 90
SS
Sbjct: 144 ISGPSS 149
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G
protein, signaling protein regulation; NMR {Homo
sapiens} SCOP: a.91.1.1
Length = 152
Score = 69.3 bits (169), Expect = 2e-16
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ- 83
Y++ +VSLDSRVRE +N+ M PS HTFD+AQLQIYTLMHRDSYPRF++S Y+
Sbjct: 79 YVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRAL 138
Query: 84 LAQLDSSP 91
L +DSS
Sbjct: 139 LPWVDSSS 146
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein,
structural genomics, structura genomics consortium, SGC,
signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B*
2bt2_A
Length = 155
Score = 68.9 bits (168), Expect = 3e-16
Identities = 22/60 (36%), Positives = 40/60 (66%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+++ + +V++D + RE +N+ PS FD+AQ ++++LM +DSYPRF+ S +Y L
Sbjct: 94 FVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDL 153
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein,
structural genomics, structural genomics consortium,
SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Length = 151
Score = 68.1 bits (166), Expect = 4e-16
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+I T +V+LD +E++ ++ P+ H+FD AQ ++Y LM +DSY RF+ S +Y L
Sbjct: 70 FIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDL 129
Query: 85 AQLDSSPGDTGGNSDSS 101
+ S
Sbjct: 130 MEGRPQRPTNLRRRSRS 146
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP
domain, DHEX domain, GGL domain, propeller, signaling
protein; 1.95A {Mus musculus}
Length = 424
Score = 71.0 bits (173), Expect = 6e-16
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
++ +++D + +I + + P + D AQ IY LM +DSY R++ S +YK++
Sbjct: 356 FLAPGARRWINIDGKTMDITVKGLRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 415
Query: 85 AQLDSSP 91
P
Sbjct: 416 LAKAIEP 422
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 149
Score = 65.4 bits (159), Expect = 6e-15
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
++++K S +V+++ + R + + + P F + Q QI+ LM DSY RF+ S ++ +
Sbjct: 74 FLSSKASSQVNVEGQSR-LNEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKH 132
Query: 85 AQLDSS 90
+ +
Sbjct: 133 KRTEEE 138
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein
signalling domain, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 154
Score = 64.7 bits (157), Expect = 1e-14
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
+++++ V++D + + + P F QLQI+ LM DSY RF+ S +Y++
Sbjct: 72 FLSSQALSPVNIDRQAW-LGEEVLAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYREC 130
Query: 85 --AQLDSSPGDTGGNSDSSTP 103
A+ + P G+S +P
Sbjct: 131 LLAEAEGRPLREPGSSRLGSP 151
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding
protein G(K) subunit A; RGS, heterotrimeric G protein,
signall complex; HET: GDP; 2.71A {Homo sapiens} PDB:
2i59_A
Length = 153
Score = 64.7 bits (157), Expect = 1e-14
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
++++K S +V+++ + R + + + P F + Q QI+ LM DSY RF+ S ++ +
Sbjct: 90 FLSSKASSQVNVEGQSR-LNEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKH 148
Query: 85 AQ 86
+
Sbjct: 149 KR 150
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A
{Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Length = 147
Score = 62.0 bits (150), Expect = 9e-14
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 22 ARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVY 81
+ K + S ++ + + ++ P FD+AQ +I M ++YP F+ S +Y
Sbjct: 77 LDNNGIVSRQTKPATKSFIKGCIMKQLIDP--AMFDQAQTEIQATMEENTYPSFLKSDIY 134
Query: 82 KQ-LAQLDSSP 91
+ SP
Sbjct: 135 LEYTRTGSESP 145
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 155
Score = 62.0 bits (150), Expect = 1e-13
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 25 YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ- 83
++ +K + V++DS+ + + + + +P F E QLQI+ LM DSY RF+ S +Y++
Sbjct: 76 FLCSKATTPVNIDSQAQ-LADDVLRAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQEC 134
Query: 84 LAQLDSSPGDTGGNSDSSTPA 104
+ S+PA
Sbjct: 135 ILAEVEGRALPDSQQVPSSPA 155
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 1e-04
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 26/53 (49%)
Query: 29 KQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRF-INSTV 80
KQ+ K L +A L++Y DS P I +T+
Sbjct: 19 KQALK-KL---------------------QASLKLYA---DDSAPALAIKATM 46
Score = 32.6 bits (73), Expect = 0.011
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 15/36 (41%)
Query: 82 KQ-LAQLDSS-----PGDTGGNSDSSTPARKSSNAT 111
KQ L +L +S DS+ PA + AT
Sbjct: 19 KQALKKLQASLKLYAD-------DSA-PAL-AIKAT 45
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase
family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A
{Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A*
2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Length = 744
Score = 26.5 bits (59), Expect = 2.3
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 8/50 (16%)
Query: 59 AQLQIYTLMHRDSYPRFINSTV--YKQLAQLD--SSPGDT----GGNSDS 100
+ LM+ + Y + +SPG G NS S
Sbjct: 333 CLFPLLNLMYPSVNKEMQEGLINTYLESGFFPEWASPGHRGCMVGNNSAS 382
>2ww2_A Mannosidase, alpha-1,2-mannosidase; hydrolase, glycoside hydrolase
family 92, BT2199; HET: SWA; 1.90A {Bacteroides
thetaiotaomicron} PDB: 2wvy_A*
Length = 737
Score = 24.9 bits (55), Expect = 8.2
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 59 AQLQIYTLMHRDSYPRFINSTV--YKQLAQLD--SSPGDTG 95
A ++TL++ + R S + Y + + +SPG G
Sbjct: 337 AVHPLFTLLYPEVSERVTQSIINAYNESGFMPEWASPGHRG 377
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.125 0.350
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,481,615
Number of extensions: 69048
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 26
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)