RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1250
         (111 letters)



>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 128

 Score = 72.4 bits (177), Expect = 2e-18
 Identities = 38/60 (63%), Positives = 47/60 (78%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           Y++     +VSLDSRVRE +N+ M  PS HTFD+AQLQIYTLMHRDSYPRF++S  Y+ L
Sbjct: 68  YVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRAL 127


>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 128

 Score = 70.8 bits (173), Expect = 8e-18
 Identities = 27/60 (45%), Positives = 40/60 (66%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I+ + + +V+LDS  RE  +RNM+ P+   FDEAQ +I+ LM +DSY RF+ S  Y  L
Sbjct: 68  FISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL 127


>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18,
           RGS18 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 132

 Score = 70.8 bits (173), Expect = 1e-17
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I T    +V+LD   +E++  ++  P+ H+FD AQ ++Y LM +DSY RF+ S +Y  L
Sbjct: 68  FIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDL 127

Query: 85  AQ 86
            +
Sbjct: 128 ME 129


>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 138

 Score = 70.8 bits (173), Expect = 1e-17
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           ++       +++D +  +I  + +  P  +  D AQ  IY LM +DSY R++ S +YK++
Sbjct: 72  FLAPGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 131

Query: 85  AQLDSSP 91
                 P
Sbjct: 132 LAKAIEP 138


>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16,
           RGS16 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 116

 Score = 67.0 bits (163), Expect = 2e-16
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I ++   +V++D   RE+   N+ + +   FD AQ +  TLM +DSYPRF+ S  Y+ L
Sbjct: 57  FICSEAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRDL 116


>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2,
           N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 157

 Score = 66.1 bits (161), Expect = 1e-15
 Identities = 9/58 (15%), Positives = 17/58 (29%)

Query: 29  KQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 86
             S   S  +      +          F     +I   +  D + +FI S  + +  Q
Sbjct: 91  ACSHPFSKSAIEHVQGHLVKKQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTRFCQ 148


>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 147

 Score = 58.9 bits (142), Expect = 5e-13
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 32  FKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 86
            K +  S ++  + + ++ P    FD+AQ +I   M  ++YP F+ S +Y +  +
Sbjct: 87  TKPATKSFIKGCIMKQLIDP--AMFDQAQTEIQATMEENTYPSFLKSDIYLEYTR 139


>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB,
          C-terminal domain {Archaeon Pyrococcus furiosus [TaxId:
          2261]}
          Length = 84

 Score = 22.8 bits (49), Expect = 7.2
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 66 LMHRDSYPR 74
           M RD YP+
Sbjct: 75 FMPRDWYPK 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.125    0.350 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,980
Number of extensions: 13165
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 8
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)