BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12508
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The
Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain
Length = 98
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 7/93 (7%)
Query: 10 RNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG 68
R WY+G+VTRH+AE L EG +L+R+SES+ D+S+SLK++ H K+Q +
Sbjct: 1 REWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV- 59
Query: 69 KFILGQFSAPFDSVPEMIQHFAENRLPILGAEH 101
+ +GQ F ++ E+++H+ + PI +EH
Sbjct: 60 -YCIGQ--RRFHTMDELVEHY--KKAPIFTSEH 87
>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide
From Translocated Intimin Receptor (Tir) Of Epec
Length = 102
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 57/91 (62%), Gaps = 7/91 (7%)
Query: 12 WYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
WY+G+VTRH+AE L EG +L+R+SES+ D+S+SLK++ H K+Q + +
Sbjct: 7 WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV--Y 64
Query: 71 ILGQFSAPFDSVPEMIQHFAENRLPILGAEH 101
+GQ F ++ E+++H+ + PI +EH
Sbjct: 65 CIGQ--RRFHTMDELVEHY--KKAPIFTSEH 91
>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed
Length = 99
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
WY+G VTRH+AE L +EG +L+R+SES+ D+S+SLK+ H K+Q +
Sbjct: 3 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETV--Y 60
Query: 71 ILGQFSAPFDSVPEMIQHFAENRLPILGAE 100
+GQ F ++ E+++H+ + PI +E
Sbjct: 61 CIGQ--RKFSTMEELVEHY--KKAPIFTSE 86
>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
pdb|2CI9|B Chain B, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
Length = 102
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
WY+G VTRH+AE L +EG +L+R+SES+ D+S+SLK+ H K+Q +
Sbjct: 7 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETV--Y 64
Query: 71 ILGQFSAPFDSVPEMIQHFAENRLPILGAE 100
+GQ F ++ E+++H+ + PI +E
Sbjct: 65 CIGQ--RKFSTMEELVEHY--KKAPIFTSE 90
>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene
Tyrosine- Protein Kinase Fer From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr3461d
Length = 116
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
KPL +++WYHG++ R EA+ +L+ +G +LVR S +Y LS+ S H IQ
Sbjct: 12 KPLAEQDWYHGAIPRIEAQELLK--KQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYV 69
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
+ +F F ++P++I H + I + LL+P+
Sbjct: 70 DNMYRF----EGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPI 109
>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc
Gamma-2
Length = 124
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 66/115 (57%), Gaps = 11/115 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHM 59
+ NP P + + WY+ ++R EAE++L R +G++L+R E Y+++ ++ H
Sbjct: 10 VPNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHC 68
Query: 60 KIQRDPDTGK-FILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
+I RD G+ F+LG SA F+S+ E++ ++ ++ L M L +P+ +LL
Sbjct: 69 RINRD---GRHFVLGT-SAYFESLVELVSYYEKHAL----YRKMRLRYPVTPELL 115
>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With
Rlnpyaqlwhr Peptide
pdb|3TKZ|A Chain A, Structure Of The Shp-2 N-Sh2 Domain In A 1:2 Complex
With Rvipyfvplnr Peptide
Length = 109
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
+ R W+H ++T EAEN+L +GS+L R S+SN D++LS++ H+KIQ
Sbjct: 4 MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTG 63
Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAE 91
D G+ F ++ E++Q++ E
Sbjct: 64 DYYDLYGGE---KFATLAELVQYYME 86
>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYA|B Chain B, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYB|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYC|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYD|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
Length = 101
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 10 RNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG 68
R W+H ++T EAEN+L +GS+L R S+SN D++LS++ H+KIQ D
Sbjct: 2 RRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYY 61
Query: 69 KFILGQFSAPFDSVPEMIQHFAE 91
G+ F ++ E++Q++ E
Sbjct: 62 DLYGGE---KFATLAELVQYYME 81
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
L++ +WYHG V+R+ AE +L + GS+LVR SES+ S+SL+ H +I D
Sbjct: 102 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 161
Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
GK + S F+++ E++ H
Sbjct: 162 -GKLYVSSESR-FNTLAELVHH 181
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
L++ +WYHG V+R+ AE +L + GS+LVR SES+ S+SL+ H +I D
Sbjct: 141 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 200
Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
GK + S F+++ E++ H
Sbjct: 201 -GKLYVSSESR-FNTLAELVHH 220
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
L++ +WYHG V+R+ AE +L + GS+LVR SES+ S+SL+ H +I D
Sbjct: 99 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 158
Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
GK + S F+++ E++ H
Sbjct: 159 -GKLYVSSESR-FNTLAELVHH 178
>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|B Chain B, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 112
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
L++ +WYHG V+R+ AE +L + GS+LVR SES+ S+SL+ H +I D
Sbjct: 2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
GK + S F+++ E++ H
Sbjct: 62 -GKLYVSSESR-FNTLAELVHH 81
>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN
COMPLEX
pdb|3UYO|A Chain A, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN
COMPLEX
Length = 123
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
L++ +WYHG V+R+ AE +L + GS+LVR SES+ S+SL+ H +I D
Sbjct: 13 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 72
Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
GK + S F+++ E++ H
Sbjct: 73 -GKLYVSSESR-FNTLAELVHH 92
>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain
Length = 119
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
L++ +WYHG V+R AE +L + GS+LVR SES+ S+SL+ H +I D
Sbjct: 13 LEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTAD 72
Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
++ + + F ++ E++ H
Sbjct: 73 GKVYVTAE--SRFSTLAELVHH 92
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
L++ +WYHG V+R+ AE +L + GS+LVR SES+ S+SL+ H +I D
Sbjct: 67 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 126
Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
GK + S F+++ E++ H
Sbjct: 127 -GKLYVSSESR-FNTLAELVHH 146
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 51.6 bits (122), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
+ R W+H ++T EAEN+L +GS+L R S+SN D +LS++ H+KIQ
Sbjct: 1 MKSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTG 60
Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAEN 92
D G+ F ++ E++Q++ E+
Sbjct: 61 DYYDLYGGE---KFATLAELVQYYMEH 84
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 6 PLDQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
P +R W+HG ++ EAE +L GS+LVR S+S+ D+ LS+++ +
Sbjct: 107 PTSER-WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKS 165
Query: 65 PDTGKFILGQ-------FSAPFDSVPEMIQHFAEN 92
T I Q FDS+ ++++H+ +N
Sbjct: 166 KVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKN 200
>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology
2 Domain Of C-Abl
Length = 109
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
L++ +WYHG V+R+ AE +L + GS+LVR SES+ S+SL+ H +I D
Sbjct: 6 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 65
Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
GK + S F+++ E++ H
Sbjct: 66 -GKLYVSSESR-FNTLAELVHH 85
>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|B Chain B, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|C Chain C, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|D Chain D, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1Q|A Chain A, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1Q|B Chain B, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|A Chain A, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|C Chain C, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|E Chain E, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|G Chain G, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
Length = 100
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
W+H ++RH+AEN+L + G +++R S+S+ D+S+S++ H K+ RD F+
Sbjct: 11 WFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFL 70
Query: 72 LGQFSAPFDSVPEMIQHF 89
++ F S+ +++ ++
Sbjct: 71 ---WTEKFPSLNKLVDYY 85
>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound
Protein 2 (Grb2) Sh2 Domain, 24 Structures
Length = 107
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 11 NWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
+W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK
Sbjct: 2 SWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGK 60
Query: 70 FILGQFSAPFDSVPEMIQH 88
+ L + F+S+ E++ +
Sbjct: 61 YFL--WVVKFNSLNELVDY 77
>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src
Homology Domain-2 Of The Growth Factor Receptor Bound
Protein-2, Nmr, 18 Structures
Length = 112
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 67
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 68 FL--WVVKFNSLNELVDY 83
>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
Length = 117
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 66
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 67 FL--WVVKFNSLNELVDY 82
>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMD|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2
Tripeptide Mimic
pdb|3IMJ|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2
Tripeptide Mimic
pdb|3IN7|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide
Mimic
pdb|3IN7|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide
Mimic
pdb|3IN8|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Ptyr-Ile-Asn-Nh2 Tripeptide Mimic
pdb|3KFJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-py-e-n-nh2 Tripeptide Mimic
pdb|3N8M|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
An Acyclic Ligand Having The Sequence Pyvnvp
pdb|3OV1|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
pdb|3S8L|A Chain A, Protein-Ligand Interactions: Thermodynamic Effects
Associated With Increasing Hydrophobic Surface Area
pdb|3S8N|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
pdb|3S8O|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
Length = 117
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 66
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 67 FL--WVVKFNSLNELVDY 82
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 67
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 68 FL--WVVKFNSLNELVDY 83
>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974)
Length = 123
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 15 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 73
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 74 FL--WVVKFNSLNELVDY 89
>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Highly Affine Phospho Peptide
pdb|1JYQ|B Chain B, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Highly Affine Phospho Peptide
pdb|1JYR|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Phosphorylated Peptide
pdb|1JYU|A Chain A, Xray Structure Of Grb2 Sh2 Domain
Length = 96
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG-AGKY 63
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 64 FL--WVVKFNSLNELVDY 79
>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The
Grb2 Sh2 Domain
pdb|2H5K|A Chain A, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2H5K|B Chain B, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2HUW|A Chain A, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|2HUW|B Chain B, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|3C7I|A Chain A, X-Ray Crystal Structure Of The Complex Between The
Grb2-Sh2 Domain And A Flexible Ligand, Fptvn
Length = 116
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 66
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 67 FL--WVVKFNSLNELVDY 82
>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
pdb|1A1A|B Chain B, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
Length = 107
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
WY G +TR E+E +L N+ G++LVR SE+ + YSLS+ +A+G H KI R
Sbjct: 9 WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHYKI-RK 67
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F+S+ +++ ++++
Sbjct: 68 LDSGGFYITS-RTQFNSLQQLVAYYSK 93
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide
Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHM 59
M N L WY G ++R E LR++ +G++LVR++ + DY+L+L+ +
Sbjct: 2 MNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSI 61
Query: 60 KI-QRDPDTGKFILGQFSAP--FDSVPEMIQHFAENRLPILGAE-HMCLLHPM 108
KI RD G FS P F+SV E+I H+ L + + LL+P+
Sbjct: 62 KIFHRDGKYG------FSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPV 108
>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOA|B Chain B, Crystal Structures Of A High-affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|A Chain A, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|B Chain B, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|C Chain C, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|D Chain D, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
Length = 99
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 6 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 64
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 65 FL--WVVKFNSLNELVDY 80
>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With
Cyclo-[n-Alpha-Acetyl-L-Thi
Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl]
(Pkf273-791)
Length = 117
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 14 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 72
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 73 FL--WVVKFNSLNELVDY 88
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 60 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 118
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 119 FL--WVVKFNSLNELVDY 134
>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2
Domain Complexed With Phosphotyrosyl Heptapeptide
Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2)
pdb|3N7Y|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
pdb|3N7Y|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
pdb|3N7Y|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
Length = 98
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 6 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 64
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 65 FL--WVVKFNSLNELVDY 80
>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|B Chain B, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|C Chain C, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|D Chain D, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
Length = 114
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 13 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 71
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 72 FL--WVVKFNSLNELVDY 87
>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase
pdb|1OO4|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase Complexed
To A Peptide Derived From Pdgfr
Length = 111
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHM 59
M N L WY G ++R E LR++ +G++LVR++ + DY+L+L+ +
Sbjct: 2 MNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSI 61
Query: 60 KI-QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHPM 108
KI RD GK+ S F+SV E+I H+ L + + LL+P+
Sbjct: 62 KIFHRD---GKYGFSD-SLTFNSVVELINHYRNESLAQYNPKLDVKLLYPV 108
>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein
Sh2 Domain Complexed With The Inhibitor
pdb|1QG1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With An Shc-Derived Peptide
Length = 104
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 63
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 64 FL--WVVKFNSLNELVDY 79
>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With A Phosphotyrosyl Pentapeptide
Length = 98
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 63
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 64 FL--WVVKFNSLNELVDY 79
>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|B Chain B, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|C Chain C, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|D Chain D, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|F Chain F, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|G Chain G, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|H Chain H, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|I Chain I, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|J Chain J, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|K Chain K, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|L Chain L, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
Length = 96
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 4 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 62
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 63 FL--WVVKFNSLNELVDY 78
>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications.
pdb|3MXY|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications
Length = 101
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L + ++G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 67
Query: 71 ILGQFSAPFDSVPEMIQH 88
L + F+S+ E++ +
Sbjct: 68 FL--WVVKFNSLNELVDY 83
>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain
pdb|2IUH|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With C-Kit Phosphotyrosyl Peptide
pdb|2IUI|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
pdb|2IUI|B Chain B, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
Length = 120
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHM 59
M N L WY G ++R E LR++ +G++LVR++ + DY+L+L+ +
Sbjct: 2 MNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 61
Query: 60 KI-QRDPDTGKFILGQFSAP--FDSVPEMIQHFAENRLPILGAE-HMCLLHPM 108
KI RD G FS P F SV E+I H+ L + + LL+P+
Sbjct: 62 KIFHRDGKYG------FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPV 108
>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300.
pdb|1O42|A Chain A, Crystal Structure Of Sh2 In Complex With Ru81843.
pdb|1O43|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82129.
pdb|1O44|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85052
pdb|1O45|A Chain A, Crystal Structure Of Sh2 In Complex With Ru84687.
pdb|1O46|A Chain A, Crystal Structure Of Sh2 In Complex With Ru90395.
pdb|1O47|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82209.
pdb|1O48|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85053.
pdb|1O49|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85493.
pdb|1O4A|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82197.
pdb|1O4B|A Chain A, Crystal Structure Of Sh2 In Complex With Ru83876.
pdb|1O4D|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78262.
pdb|1O4E|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78299.
pdb|1O4H|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79072.
pdb|1O4I|A Chain A, Crystal Structure Of Sh2 In Complex With Pas219.
pdb|1O4J|A Chain A, Crystal Structure Of Sh2 In Complex With Iso24.
pdb|1O4K|A Chain A, Crystal Structure Of Sh2 In Complex With Pasbn.
pdb|1O4L|A Chain A, Crystal Structure Of Sh2 In Complex With Fragment2.
pdb|1O4M|A Chain A, Crystal Structure Of Sh2 In Complex With Malonicacid.
pdb|1O4N|A Chain A, Crystal Structure Of Sh2 In Complex With Oxalic Acid.
pdb|1O4O|A Chain A, Crystal Structure Of Sh2 In Complex With
Phenylphosphate.
pdb|1O4P|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78791.
pdb|1O4Q|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79256.
pdb|1O4R|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78783
Length = 108
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
WY G +TR E+E +L N+ G++LVR SE+ + Y LS+ +A+G H KI R
Sbjct: 7 WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 65
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F+S+ +++ ++++
Sbjct: 66 LDSGGFYITS-RTQFNSLQQLVAYYSK 91
>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein
Interactions
pdb|1HCT|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1HCS|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1A07|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A07|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A08|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Difluoro
Phosphotyr- Glu-(N,N-Dipentyl Amine)
pdb|1A08|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Difluoro
Phosphotyr- Glu-(N,N-Dipentyl Amine)
pdb|1A09|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A09|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A1B|A Chain A, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N,N- Dipentyl Amine)
pdb|1A1B|B Chain B, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N,N- Dipentyl Amine)
pdb|1A1C|A Chain A, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1C|B Chain B, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1E|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
pdb|1A1E|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
Length = 107
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
WY G +TR E+E +L N+ G++LVR SE+ + Y LS+ +A+G H KI R
Sbjct: 9 WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 67
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F+S+ +++ ++++
Sbjct: 68 LDSGGFYITS-RTQFNSLQQLVAYYSK 93
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHM 59
M N L WY G ++R E LR++ +G++LVR++ + DY+L+L+ +
Sbjct: 1 MNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 60
Query: 60 KI-QRDPDTGKFILGQFSAP--FDSVPEMIQHFAENRLPILGAE-HMCLLHPM 108
KI RD G FS P F SV E+I H+ L + + LL+P+
Sbjct: 61 KIFHRDGKYG------FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPV 107
>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A
C-Kit Phosphopeptide
Length = 141
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQ 62
K L ++ WY G +TR EAE L N +GS+LVR+S +R SLS +S +H +I+
Sbjct: 19 KKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIE 76
>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate.
pdb|1O4F|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79073.
pdb|1O4G|A Chain A, Crystal Structure Of Sh2 In Complex With Dpi59
Length = 108
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
WY G +TR E+E +L N+ G++LVR SE+ + Y LS+ +A+G H KI R
Sbjct: 7 WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHYKI-RK 65
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F+S+ +++ ++++
Sbjct: 66 LDSGGFYITS-RTQFNSLQQLVAYYSK 91
>pdb|2C9W|A Chain A, Crystal Structure Of Socs-2 In Complex With Elongin-B And
Elongin-C At 1.9a Resolution
Length = 169
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
+ L Q WY GS+T +EA+ L+ + EG++L+R+S + ++S+K++ G +++I+
Sbjct: 12 RELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQ 71
Query: 65 PDTGKFILGQFSA------PFDSVPEMIQHFAE 91
GKF L FDSV +I ++ +
Sbjct: 72 D--GKFRLDSIICVKSKLKQFDSVVHLIDYYVQ 102
>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala,
Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The
Pqpyeeipi Peptide
Length = 103
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKS---ARGF--MHMKIQRD 64
WY G +TR E+E +L N G++LVR SE+ + Y LS+ + A+G H KI R
Sbjct: 4 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKI-RK 62
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F S+ +++ ++++
Sbjct: 63 LDSGGFYITS-RTQFSSLQQLVAYYSK 88
>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
pdb|2PNB|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
Length = 104
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHMKI-QRD 64
L WY G ++R E LR++ +G++LVR++ + DY+L+L+ +KI RD
Sbjct: 1 LQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 60
Query: 65 PDTGKFILGQFSAP--FDSVPEMIQHFAENRLPILGAE-HMCLLHPM 108
G FS P F+SV E+I H+ L + + LL+P+
Sbjct: 61 GKYG------FSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPV 101
>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 373
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHM 59
M N L WY G ++R E LR++ +G++LVR++ + DY+L+L+ +
Sbjct: 1 MNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 60
Query: 60 KI-QRDPDTGKFILGQFSAP--FDSVPEMIQHFAENRL 94
KI RD G FS P F SV E+I H+ L
Sbjct: 61 KIFHRDGKYG------FSDPLTFSSVVELINHYRNESL 92
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNS 39
D++ W GS R++AEN+LR +G++LVR S
Sbjct: 299 DEKTWNVGSSNRNKAENLLRGKRDGTFLVRES 330
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 65/108 (60%), Gaps = 12/108 (11%)
Query: 8 DQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPD-YSLSLKSARGFMHMKIQRDP 65
+ + WYH S+TR +AE++L R +G++LVR + N P+ Y++S ++ H ++Q++
Sbjct: 120 ESKEWYHASLTRAQAEHMLMRVPRDGAFLVR--KRNEPNSYAISFRAEGKIKHCRVQQEG 177
Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
T +LG ++ FDS+ ++I ++ ++ L M L +P+ E+ L
Sbjct: 178 QT--VMLG--NSEFDSLVDLISYYEKHPL----YRKMKLRYPINEEAL 217
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 12 WYHGSVT-----RHEAENILR------NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMK 60
W+HG + RH AE +L + +GS+LVR SE+ DY+LS H +
Sbjct: 6 WFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCR 65
Query: 61 I--QRDPDTGKFILGQFSAPFDSVPEMIQHFAE 91
I ++D T KF L + FDS+ ++I H+ +
Sbjct: 66 IHSRQDAGTPKFFLTD-NLVFDSLYDLITHYQQ 97
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 226
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 65/108 (60%), Gaps = 12/108 (11%)
Query: 8 DQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPD-YSLSLKSARGFMHMKIQRDP 65
+ + WYH S+TR +AE++L R +G++LVR + N P+ Y++S ++ H ++Q++
Sbjct: 120 ESKEWYHASLTRAQAEHMLMRVPRDGAFLVR--KRNEPNSYAISFRAEGKIKHCRVQQEG 177
Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
T +LG ++ FDS+ ++I ++ ++ L M L +P+ E+ L
Sbjct: 178 QT--VMLG--NSEFDSLVDLISYYEKHPL----YRKMKLRYPINEEAL 217
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Query: 11 NWYHGSVT-----RHEAENILR------NSNEGSYLVRNSESNRPDYSLSLKSARGFMHM 59
W+HG + RH AE +L + +GS+LVR SE+ DY+LS H
Sbjct: 5 KWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHC 64
Query: 60 KIQRDPDTG--KFILGQFSAPFDSVPEMIQHFAE 91
+I D G KF L + FDS+ ++I H+ +
Sbjct: 65 RIHSRQDAGTPKFFLTD-NLVFDSLYDLITHYQQ 97
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 65/108 (60%), Gaps = 12/108 (11%)
Query: 8 DQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPD-YSLSLKSARGFMHMKIQRDP 65
+ + WYH S+TR +AE++L R +G++LVR + N P+ Y++S ++ H ++Q++
Sbjct: 120 ESKEWYHASLTRAQAEHMLMRVPRDGAFLVR--KRNEPNSYAISFRAEGKIKHCRVQQEG 177
Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
T +LG ++ FDS+ ++I ++ ++ L M L +P+ E+ L
Sbjct: 178 QT--VMLG--NSEFDSLVDLISYYEKHPL----YRKMKLRYPINEEAL 217
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 11 NWYHGSVT-----RHEAENILR------NSNEGSYLVRNSESNRPDYSLSLKSARGFMHM 59
W+HG + RH AE +L + +GS+LVR SE+ DY+LS H
Sbjct: 5 KWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHC 64
Query: 60 KI--QRDPDTGKFILGQFSAPFDSVPEMIQHFAE 91
+I ++D T KF L + FDS+ ++I H+ +
Sbjct: 65 RIHSRQDAGTPKFFLTD-NLVFDSLYDLITHYQQ 97
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARG 55
+A + WY G +TR E+E +L N+ G++LVR SE+ + Y LS+ +A+G
Sbjct: 56 VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 115
Query: 56 F--MHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
H KI R D+G F + F+S+ +++ +++++
Sbjct: 116 LNVKHYKI-RKLDSGGFYITS-RTQFNSLQQLVAYYSKH 152
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARG 55
+A + WY G +TR E+E +L N+ G++LVR SE+ + Y LS+ +A+G
Sbjct: 56 VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 115
Query: 56 F--MHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
H KI R D+G F + F+S+ +++ +++++
Sbjct: 116 LNVKHYKI-RKLDSGGFYITS-RTQFNSLQQLVAYYSKH 152
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARG 55
+A + WY G +TR E+E +L N+ G++LVR SE+ + Y LS+ +A+G
Sbjct: 56 VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 115
Query: 56 F--MHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
H KI R D+G F + F+S+ +++ +++++
Sbjct: 116 LNVKHYKI-RKLDSGGFYITS-RTQFNSLQQLVAYYSKH 152
>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain
Length = 113
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
WY G +TR E+E++L N G++LVR SE+ + Y LS+ +A+G H KI R
Sbjct: 6 WYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 64
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F S+ +++ ++++
Sbjct: 65 LDSGGFYITS-RTQFSSLQQLVAYYSK 90
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 15/100 (15%)
Query: 12 WYHGSVTRHEAE-NILRNSN-EGSYLVRNSESNRPDYSLSLK---SARG--FMHMKIQRD 64
WY G + R +AE +L N G++L+R SE+ + YSLS++ +G H KI++
Sbjct: 69 WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHVKHYKIRKL 128
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCL 104
+ G +I + A F+++ +++QH++E A+ +C
Sbjct: 129 DNGGYYITTR--AQFETLQQLVQHYSEK------ADGLCF 160
>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two
Phosphotyrosines In Signaling Mediated By Syk Tyrosine
Kinase
pdb|2PLD|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-gamma1 Complexed With A High Affinity
Binding Peptide
pdb|2PLE|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-Gamma1 Complexed With A High Affinity
Binding Peptide
Length = 105
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 66/112 (58%), Gaps = 12/112 (10%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPD-YSLSLKSARGFMHM 59
+P + + WYH S+TR +AE++L R +G++LVR + N P+ Y++S ++ H
Sbjct: 1 GSPGIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVR--KRNEPNSYAISFRAEGKIKHC 58
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
++Q++ T +LG ++ FDS+ ++I ++ ++ L M L +P+ E+
Sbjct: 59 RVQQEGQT--VMLG--NSEFDSLVDLISYYEKHPL----YRKMKLRYPINEE 102
>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZL|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZV|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
pdb|1NZV|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
Length = 103
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
WY G +TR E+E +L N G++LVR SE+ + Y LS+ +A+G H KI R
Sbjct: 4 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 62
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F S+ +++ ++++
Sbjct: 63 LDSGGFYITS-RTQFSSLQQLVAYYSK 88
>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain
With Conformationally Constrained Peptide Inhibitor
pdb|1IS0|B Chain B, Crystal Structure Of A Complex Of The Src Sh2 Domain
With Conformationally Constrained Peptide Inhibitor
pdb|2JYQ|A Chain A, Nmr Structure Of The Apo V-Src Sh2 Domain
Length = 106
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
WY G +TR E+E +L N G++LVR SE+ + Y LS+ +A+G H KI R
Sbjct: 5 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F S+ +++ ++++
Sbjct: 64 LDSGGFYITS-RTQFSSLQQLVAYYSK 89
>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SHB|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SPR|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|D Chain D, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
Length = 104
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
WY G +TR E+E +L N G++LVR SE+ + Y LS+ +A+G H KI R
Sbjct: 5 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F S+ +++ ++++
Sbjct: 64 LDSGGFYITS-RTQFSSLQQLVAYYSK 89
>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
pdb|1P13|B Chain B, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
Length = 102
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
WY G +TR E+E +L N G++LVR SE+ + Y LS+ +A+G H KI R
Sbjct: 4 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 62
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F S+ +++ ++++
Sbjct: 63 LDSGGFYITS-RTQFSSLQQLVAYYSK 88
>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide
Complex
Length = 113
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
WY G +TR E+E +L N G++LVR SE+ + Y LS+ +A+G H KI R
Sbjct: 6 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 64
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F S+ +++ ++++
Sbjct: 65 LDSGGFYITS-RTQFSSLQQLVAYYSK 90
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARG 55
+A + WY G +TR E+E +L N+ G++LVR SE+ + Y LS+ +A+G
Sbjct: 139 VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 198
Query: 56 F--MHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
H KI R D+G F + F+S+ +++ +++++
Sbjct: 199 LNVKHYKI-RKLDSGGFYITS-RTQFNSLQQLVAYYSKH 235
>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The
Phosphopeptide S(Ptr)vnvqn
pdb|1F2F|A Chain A, Src Sh2 Thref1trp Mutant
Length = 104
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
WY G +TR E+E +L N G++LVR SE+ + Y LS+ +A+G H KI R
Sbjct: 5 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F S+ +++ ++++
Sbjct: 64 LDSGGFYIWS-RTQFSSLQQLVAYYSK 89
>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted
Phosphopeptide Complex
Length = 113
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
WY G +TR E+E +L N G++LVR SE+ + Y LS+ +A+G H KI R
Sbjct: 6 WYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 64
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F S+ +++ ++++
Sbjct: 65 LDSGGFYITS-RTQFSSLQQLVAYYSK 90
>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed
With A Tyrosine-Phosphorylated Peptide From The T-Cell
Receptor, Minimized Average Structure
Length = 107
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
W+HG ++R EAE +L+ + G +LVR S + Y L+ + H+ + DP+ +
Sbjct: 9 WFHGKLSRREAEALLQLN--GDFLVRESTTTPGQYVLTGSQSGQPKHLLLV-DPEG---V 62
Query: 72 LGQFSAPFDSVPEMIQHFAENRLPILGA-EHMCLLHPMIEQLL 113
+ F+SV +I + +N LPI+ A +CL P+ +LL
Sbjct: 63 VRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKLL 105
>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, Minimized Average Structure
pdb|1AOU|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, 22 Structures
Length = 106
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAE-NILRNSN-EGSYLVRNSESNRPDYSLSLK---SARG--FMHMKIQRD 64
WY G + R +AE +L N G++L+R SE+ + YSLS++ +G H KI++
Sbjct: 7 WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 66
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
+ G +I + A F+++ +++QH++E
Sbjct: 67 DNGGYYITTR--AQFETLQQLVQHYSE 91
>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine-
Protein Kinase Txk
Length = 125
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 59/98 (60%), Gaps = 10/98 (10%)
Query: 7 LDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSL------KSARGFMHM 59
L+ WYH ++TR++AE++LR S EG+++VR+S + Y++S+ + H
Sbjct: 13 LEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSR-HLGSYTISVFMGARRSTEAAIKHY 71
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPIL 97
+I+++ D+G++ + + A F S+PE+I + N ++
Sbjct: 72 QIKKN-DSGQWYVAERHA-FQSIPELIWYHQHNAAGLM 107
>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain
pdb|4F5A|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphate Ion
pdb|4F5B|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphotyrosine
Length = 112
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF-MHMKIQRDP 65
WY G +TR E+E +L N+ G++LVR SE+ + Y+LS+ +A+G + + R
Sbjct: 11 WYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHYLIRKL 70
Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAE 91
D+G F + F+S+ +++ ++++
Sbjct: 71 DSGGFYITS-RTQFNSLQQLVAYYSK 95
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARG 55
+A + WY G +TR E+E +L N G++LVR SE+ + Y LS+ +A+G
Sbjct: 57 VAPSDSIQAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKG 116
Query: 56 F--MHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
H KI R D+G F + F S+ +++ +++++
Sbjct: 117 LNVKHYKI-RKLDSGGFYITS-RTQFSSLQQLVAYYSKH 153
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAE-NILRNSN-EGSYLVRNSESNRPDYSLSLK---SARG--FMHMKIQRD 64
WY G + R +AE +L N G++L+R SE+ + YSLS++ +G H KI++
Sbjct: 68 WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 127
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
+ G +I + A F+++ +++QH++E
Sbjct: 128 DNGGYYITTR--AQFETLQQLVQHYSE 152
>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine
Fyn-Related Kinase
Length = 121
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAEN-ILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHM 59
A + L W+ G++ R +AE +L + N+ G++L+R SES + D+SLS+ H
Sbjct: 8 AEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHY 67
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFA 90
+I+R D G F L + F ++ E + ++
Sbjct: 68 RIRR-LDEGGFFLTR-RKVFSTLNEFVNYYT 96
>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras
Gtpase-Activating Protein 1
Length = 119
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 6 PLDQRNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
P + + W+HG +++ EA N+L + S+LVR S++ DYSL ++ KI
Sbjct: 12 PHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPT 71
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAENRL 94
P+ + G++ ++S+ ++I H+ + ++
Sbjct: 72 PNNQFMMGGRY---YNSIGDIIDHYRKEQI 98
>pdb|1CSY|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With
A Phosphopeptidefrom The Gamma Chain Of The High
Affinity Immunoglobin G Receptor, Nmr
pdb|1CSZ|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With
A Phosphopeptidefrom The Gamma Chain Of The High
Affinity Immunoglobin G Receptor, Nmr
Length = 112
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 12 WYHGSVTRHEAENI--LRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
W+HG ++R E+E I + + G +L+R ++N Y+L L +H +I +D TGK
Sbjct: 15 WFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRIDKDK-TGK 72
Query: 70 FILGQFSAPFDSVPEMIQHFA 90
+ + FD++ ++++H++
Sbjct: 73 LSIPE-GKKFDTLWQLVEHYS 92
>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|C Chain C, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|E Chain E, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|G Chain G, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|I Chain I, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|K Chain K, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
Length = 254
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 12 WYHGSVTRHEAENI--LRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
W+HG ++R E+E I + + G +L+R + N Y+L L +H +I +D TGK
Sbjct: 160 WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKD-KTGK 217
Query: 70 FILGQFSAPFDSVPEMIQHFA 90
+ + FD++ ++++H++
Sbjct: 218 LSIPE-GKKFDTLWQLVEHYS 237
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 12 WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
++ G++TR EAE+ L ++G YL+R S + ++LS+ R H I+R+ +
Sbjct: 7 FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTY 66
Query: 70 FILG 73
I G
Sbjct: 67 AIAG 70
>pdb|2CS0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Hsh2d
Protein
Length = 119
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+HG+++R +AEN+L + GS+L+R S S+ Y+LS K+ H ++ D G F
Sbjct: 17 EWFHGAISREDAENLLESQPLGSFLIRVSHSHV-GYTLSYKAQSSCCHFMVKL-LDDGTF 74
Query: 71 IL 72
++
Sbjct: 75 MI 76
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 12 WYHGSVTRHEAENI--LRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
W+HG ++R E+E I + + G +L+R + N Y+L L +H +I +D TGK
Sbjct: 168 WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKD-KTGK 225
Query: 70 FILGQFSAPFDSVPEMIQHFA 90
+ + FD++ ++++H++
Sbjct: 226 LSIPE-GKKFDTLWQLVEHYS 245
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 12 WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
++ G++TR EAE+ L ++G YL+R S + ++LS+ R H I+R+ +
Sbjct: 15 FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTY 74
Query: 70 FILG 73
I G
Sbjct: 75 AIAG 78
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 12 WYHGSVTRHEAENI--LRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
W+HG ++R E+E I + + G +L+R + N Y+L L +H +I +D TGK
Sbjct: 169 WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKD-KTGK 226
Query: 70 FILGQFSAPFDSVPEMIQHFA 90
+ + FD++ ++++H++
Sbjct: 227 LSIPE-GKKFDTLWQLVEHYS 246
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 1 MANPKPLDQRN---WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARG 55
MA+ D N ++ G++TR EAE+ L ++G YL+R S + ++LS+ R
Sbjct: 2 MASSGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRK 61
Query: 56 FMHMKIQRDPDTGKFILG 73
H I+R+ + I G
Sbjct: 62 AHHYTIERELNGTYAIAG 79
>pdb|1MIL|A Chain A, Transforming Protein
Length = 104
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
W+HG ++R EAE +L+ + G +LVR S + Y L+ + H+ + DP+ +
Sbjct: 9 WFHGKLSRREAEALLQLN--GDFLVRESTTTPGQYVLTGLQSGQPKHLLLV-DPEG---V 62
Query: 72 LGQFSAPFDSVPEMIQHFAENRLPILGA-EHMCLLHPMIEQL 112
+ F+SV +I + +N LPI+ A +CL P+ +L
Sbjct: 63 VRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
D+ WY G V+R EA+ L+ G +LVR+S + DY LS+ H I P+
Sbjct: 10 DRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR 69
Query: 68 GKFILGQFSAPFDSVPEMIQHF 89
+F +G FD +P +++ +
Sbjct: 70 -RFKIGDQE--FDHLPALLEFY 88
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
D+ WY G V+R EA+ L+ G +LVR+S + DY LS+ H I P+
Sbjct: 10 DRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR 69
Query: 68 GKFILGQFSAPFDSVPEMIQHF 89
+F +G FD +P +++ +
Sbjct: 70 -RFKIGDQE--FDHLPALLEFY 88
>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like
Protein
Length = 111
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
D+ WY G V+R EA+ L+ G +LVR+S + DY LS+ H I P+
Sbjct: 17 DRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR 76
Query: 68 GKFILGQFSAPFDSVPEMIQHF 89
+F +G FD +P +++ +
Sbjct: 77 -RFKIGD--QEFDHLPALLEFY 95
>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto-
Oncogene Protein Vav1
pdb|2ROR|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Tyrosine-Phosphorylated Peptide From Slp76
Length = 138
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
P+ L WY G + R AE+IL N ++G++LVR + ++++S+K H+KI
Sbjct: 20 PQDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM- 78
Query: 64 DPDTGKFILGQFSAPFDSVPEMIQHFAENRL 94
G + + + A F + E+++ + +N L
Sbjct: 79 -TAEGLYRITEKKA-FRGLTELVEFYQQNSL 107
>pdb|1BLJ|A Chain A, Nmr Ensemble Of Blk Sh2 Domain, 20 Structures
pdb|1BLK|A Chain A, Nmr Ensemble Of Blk Sh2 Domain Using Chemical Shift
Refinement, 20 Structures
Length = 114
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLK--SARG- 55
+A + L+ W+ +++R +AE L + GS+L+R SESN+ +SLS+K + +G
Sbjct: 3 VAPVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGE 62
Query: 56 -FMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
H KI+ + G +I + + P ++ ++QH+++
Sbjct: 63 VVKHYKIRSLDNGGYYISPRITFP--TLQALVQHYSKK 98
>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With
A Syk-Derived Doubly Phosphorylated Peptide
Length = 107
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
WY G + R AE+IL N ++G++LVR + ++++S+K H+KI G +
Sbjct: 11 WYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM--TAEGLYR 68
Query: 72 LGQFSAPFDSVPEMIQHFAENRLP 95
+ + A F + E+++ + +N L
Sbjct: 69 ITEKKA-FRGLTELVEFYQQNSLK 91
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 12 WYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+H ++ +AE +L+ GS+L R S N+ D+SLS++ H++IQ D
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 71 ILGQFSAPFDSVPEMIQHFAENR 93
G+ F ++ E+++++ + +
Sbjct: 64 YGGE---KFATLTELVEYYTQQQ 83
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 14/96 (14%)
Query: 6 PLDQRNWYHGSVTRHEAENILRNSNEG-SYLVRNSESNRPDYSLSL-----KSARG---- 55
P +R WYHG ++ +AE +L+ E ++LVR S S D+ LS+ K+ G
Sbjct: 105 PTSER-WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLR 163
Query: 56 FMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAE 91
H+K+ + G++ +G FDS+ ++++HF +
Sbjct: 164 VTHIKVM--CEGGRYTVGGLET-FDSLTDLVEHFKK 196
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 12 WYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+H ++ +AE +L+ GS+L R S N+ D+SLS++ H++IQ D
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 71 ILGQFSAPFDSVPEMIQHFAENR 93
G+ F ++ E+++++ + +
Sbjct: 64 YGGE---KFATLTELVEYYTQQQ 83
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 14/96 (14%)
Query: 6 PLDQRNWYHGSVTRHEAENILRNSNEG-SYLVRNSESNRPDYSLSL-----KSARG---- 55
P +R WYHG ++ +AE +L+ E ++LVR S S D+ LS+ K+ G
Sbjct: 105 PTSER-WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLR 163
Query: 56 FMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAE 91
H+K+ + G++ +G FDS+ ++++HF +
Sbjct: 164 VTHIKVM--CEGGRYTVGGLET-FDSLTDLVEHFKK 196
>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The
Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN
Length = 100
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 12 WYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
W+ G ++R EA L+ + G++L+R SE DY LS++ + H KI R G+
Sbjct: 4 WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG-GR 62
Query: 70 FILGQFSAPFDSVPEMIQH 88
L + + F S+PE++ +
Sbjct: 63 LHLNE-AVSFLSLPELVNY 80
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI-QRDPDTGKF 70
W+HG ++ EA L+ +G +LVR S + DY L + R +H ++ RD G
Sbjct: 6 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRD---GHL 62
Query: 71 ILGQFSAPFDSVPEMIQHFAENRLPI 96
+ + + F ++ +M++H+++++ I
Sbjct: 63 TIDE-AVFFCNLMDMVEHYSKDKGAI 87
>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein-
Tyrosine Phosphatase Shp-1
pdb|2YU7|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
pdb|2RMX|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
Length = 118
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 11 NWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSL-----KSARG----FMHMK 60
WYHG ++ +AE +L+ E ++LVR S S D+ LS+ K+ G H+K
Sbjct: 7 GWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIK 66
Query: 61 IQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRL 94
+ + G++ +G FDS+ ++++HF + +
Sbjct: 67 VMC--EGGRYTVGGLET-FDSLTDLVEHFKKTGI 97
>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), C122s Mutant
Length = 106
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
W+HG +TR +AE +L G +LVR S + DY+L + S H +I K
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMY--HASKLS 67
Query: 72 LGQFSAPFDSVPEMIQHFAEN 92
+ + F+++ ++++H+ +
Sbjct: 68 IDE-EVYFENLMQLVEHYTSD 87
>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
pdb|2DX0|B Chain B, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
Length = 138
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 12 WYHGSV-TRHEAENILR------NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
W+H V +R AE +L+ + +G++LVR SE+ DY+LS + H +I+
Sbjct: 24 WFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRST 83
Query: 65 PDTG--KFILGQFSAPFDSVPEMIQHFAENRL 94
+ G K+ L + F+S+ +IQH+ E L
Sbjct: 84 MENGVMKYYLTD-NLTFNSIYALIQHYREAHL 114
>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, 30 Structures
pdb|1BFJ|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, Minimized Average Structure
Length = 112
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
D++ W GS R++AEN+LR +G++LVR S S + Y+ S+ H I + T
Sbjct: 8 DEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTA-T 65
Query: 68 GKFILGQFSAPFD---SVPEMIQHFAENRL 94
G F+ P++ S+ E++ H+ L
Sbjct: 66 GY----GFAEPYNLYSSLKELVLHYQHTSL 91
>pdb|2EKX|A Chain A, Solution Structure Of The Human Bmx Sh2 Domain
Length = 110
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Query: 7 LDQRNWYHGSVTRHEAENILR-NSNEGSYLVRNSESNRPDYSLSLKS-----ARGFM-HM 59
LD +W+ G+++R ++E +LR EG+++VRNS S Y++SL S +G + H
Sbjct: 8 LDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHY 66
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPIL 97
+ + + ++ + FDS+P++I + N ++
Sbjct: 67 HVHTNAENKLYLAENYC--FDSIPKLIHYHQHNSAGMI 102
>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The
P85 Alpha Regulatory Subunit Of Phosphoinositide
3-Kinase: An Sh2 Domain Mimicking Its Own Substrate
Length = 111
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
D++ W GS R++AEN+LR +G++LVR S S + Y+ S+ H I + T
Sbjct: 7 DEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTA-T 64
Query: 68 GKFILGQFSAPFD---SVPEMIQHFAENRL 94
G F+ P++ S+ E++ H+ L
Sbjct: 65 GY----GFAEPYNLYSSLKELVLHYQHTSL 90
>pdb|1H9O|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit:
C-Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Crystal
Structure At 1.79 A
pdb|1PIC|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C-
Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Nmr, Minimized
Mean Structure
Length = 112
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
D++ W GS R++AEN+LR +G++LVR S S + Y+ S+ H I + T
Sbjct: 8 DEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTA-T 65
Query: 68 GKFILGQFSAPFD---SVPEMIQHFAENRL 94
G F+ P++ S+ E++ H+ L
Sbjct: 66 GY----GFAEPYNLYSSLKELVLHYQHTSL 91
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNE--GSYLVRNSESNRPDYSLSLKS-----A 53
+A L+ W+ ++R +AE L GS+++R+SE+ + YSLS++
Sbjct: 55 VARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQG 114
Query: 54 RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
H KI R D G F + S F ++ E++ H+ +
Sbjct: 115 DTVKHYKI-RTLDNGGFYISPRST-FSTLQELVDHYKKG 151
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
W+HG +TR +AE +L G +LVR S + DY+L + H +I K
Sbjct: 82 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMY--HASKLS 139
Query: 72 LGQFSAPFDSVPEMIQHFAEN 92
+ + F+++ ++++H+ +
Sbjct: 140 IDE-EVYFENLMQLVEHYTTD 159
>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), Oxidized Form
Length = 106
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
W+HG +TR +AE +L G +LVR S + DY+L + H +I K
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMY--HASKLS 67
Query: 72 LGQFSAPFDSVPEMIQHFAEN 92
+ + F+++ ++++H+ +
Sbjct: 68 IDE-EVYFENLMQLVEHYTSD 87
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNE--GSYLVRNSESNRPDYSLSLKS-----A 53
+A L+ W+ ++R +AE L GS+++R+SE+ + YSLS++
Sbjct: 62 VARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQG 121
Query: 54 RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
H KI R D G F + S F ++ E++ H+ +
Sbjct: 122 DTVKHYKI-RTLDNGGFYISPRST-FSTLQELVDHYKKG 158
>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 302
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
++R WY G + R +AE +L +G++L+R S S R Y+ S+ H I R T
Sbjct: 192 EERTWYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTA-T 249
Query: 68 GKFILGQFSAPFD---SVPEMIQHF 89
G G F+ P++ S+ E++ H+
Sbjct: 250 G---FG-FAEPYNLYGSLKELVLHY 270
>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel
Interaction Between Vav2 And Arap3
pdb|2LNX|A Chain A, Solution Structure Of Vav2 Sh2 Domain
Length = 122
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
W+ G++ R + +N+L++ G+YL+R + +++S+K H+K+ + +I
Sbjct: 24 WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKV---VEKDNWI 80
Query: 72 LGQFSAPFDSVPEMIQHF 89
+ FDS+ E+++++
Sbjct: 81 HITEAKKFDSLLELVEYY 98
>pdb|2OQ1|A Chain A, Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Peptide
Length = 254
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 12 WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
WYH S+TR EAE L + +G +L+R + Y+LSL + H I +D GK
Sbjct: 161 WYHSSLTREEAERKLYSGAQTDGKFLLR-PRKEQGTYALSLIYGKTVYHYLISQD-KAGK 218
Query: 70 FILGQFSAPFDSVPEMIQHF 89
+ + + FD++ +++++
Sbjct: 219 YCIPE-GTKFDTLWQLVEYL 237
>pdb|1M61|A Chain A, Crystal Structure Of The Apo Sh2 Domains Of Zap-70
Length = 259
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 12 WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
WYH S+TR EAE L + +G +L+R + Y+LSL + H I +D GK
Sbjct: 166 WYHSSLTREEAERKLYSGAQTDGKFLLR-PRKEQGTYALSLIYGKTVYHYLISQD-KAGK 223
Query: 70 FILGQFSAPFDSVPEMIQHF 89
+ + + FD++ +++++
Sbjct: 224 YCIPE-GTKFDTLWQLVEYL 242
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 4 PKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
P P +++GS++R EAE L+ + +G +L+R + Y LSL F H I
Sbjct: 5 PDPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPI 64
Query: 62 QRDPDTGKFILG 73
+R + I G
Sbjct: 65 ERQLNGTYAIAG 76
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 12 WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
WYH S+TR EAE L + +G +L+R + Y+LSL + H I +D GK
Sbjct: 163 WYHSSLTREEAERKLYSGAQTDGKFLLR-PRKEQGTYALSLIYGKTVYHYLISQD-KAGK 220
Query: 70 FILGQFSAPFDSVPEMIQHF 89
+ + + FD++ +++++
Sbjct: 221 YCIPE-GTKFDTLWQLVEYL 239
Score = 32.0 bits (71), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 4 PKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
P P +++GS++R EAE L+ + +G +L+R + Y LSL F H I
Sbjct: 2 PDPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPI 61
Query: 62 QRDPDTGKFILG 73
+R + I G
Sbjct: 62 ERQLNGTYAIAG 73
>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein
Vav-2
Length = 118
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
W+ G++ R + +N+L++ G+YL+R + +++S+K H+K+ + +I
Sbjct: 18 WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKV---VEKDNWI 74
Query: 72 LGQFSAPFDSVPEMIQHF 89
+ FDS+ E+++++
Sbjct: 75 HITEAKKFDSLLELVEYY 92
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI-QRDPDTGKF 70
W+HG ++ EA L+ +G +LVR S + DY L + R +H ++ RD G
Sbjct: 7 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRD---GHL 63
Query: 71 ILGQFSAPFDSVPEMIQHFAENRLPI 96
+ + + F ++ + ++H+++++ I
Sbjct: 64 TIDE-AVFFCNLXDXVEHYSKDKGAI 88
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNE--GSYLVRNSESNRPDYSLSL-----KSA 53
+A L+ W+ ++R +AE L GS+++R+SE+ + YSLS+ +
Sbjct: 61 VARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQG 120
Query: 54 RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAE 91
H KI R D G F + S F ++ E++ H+ +
Sbjct: 121 DTVKHYKI-RTLDNGGFYISPRST-FSTLQELVDHYKK 156
>pdb|2HMH|A Chain A, Crystal Structure Of Socs3 In Complex With Gp130(Ptyr757)
Phosphopeptide
Length = 152
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
+ L + +Y +VT EA +L G++L+R+S R ++LS+K+ G +++IQ
Sbjct: 29 RKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQX- 87
Query: 65 PDTGKFIL------GQFSAPFDSVPEMIQHF 89
+ G F L Q FD V +++ H+
Sbjct: 88 -EGGSFSLQSDPRSTQPVPRFDXVLKLVHHY 117
>pdb|3M7F|A Chain A, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 108
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 10 RNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
++W+HG ++R E+ I++ +G +L+R+S+SN + L+L + + +I D
Sbjct: 5 QHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDD 64
Query: 68 GK--FILGQFSAPFDSVPEMIQHFAENR--LPILGAEHMCL 104
G+ F L + F + +++ + N+ LP +H C+
Sbjct: 65 GQTFFSLDDGNTKFSDLIQLVDFYQLNKGVLPC-KLKHHCI 104
>pdb|2BBU|A Chain A, Solution Structure Of Mouse Socs3 In Complex With A
Phosphopeptide From The Gp130 Receptor
Length = 164
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
L + +Y +VT EA +L G++L+R+S R ++LS+K+ G +++IQ +
Sbjct: 20 LQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQC--E 77
Query: 67 TGKFIL------GQFSAPFDSVPEMIQHF 89
G F L Q FD V +++ H+
Sbjct: 78 GGSFSLQSDPRSTQPVPRFDCVLKLVHHY 106
>pdb|1NRV|A Chain A, Crystal Structure Of The Sh2 Domain Of Grb10
pdb|1NRV|B Chain B, Crystal Structure Of The Sh2 Domain Of Grb10
Length = 105
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 10 RNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
++W+HG ++R E+ I++ +G +L+R+S+SN + L+L + + +I D
Sbjct: 5 QHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDD 64
Query: 68 GK--FILGQFSAPFDSVPEMIQHFAENR--LPILGAEHMCL 104
G+ F L + F + +++ + N+ LP +H C+
Sbjct: 65 GQTFFSLDDGNTKFSDLIQLVDFYQLNKGVLPC-KLKHHCI 104
>pdb|1WQU|A Chain A, Solution Structure Of The Human Fes Sh2 Domain
pdb|2DCR|A Chain A, Fully Automated Solution Structure Determination Of The
Fes Sh2 Domain
Length = 114
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
KPL ++ WYHG++ R E +L +S G +LVR S+ + +Y LS+ H IQ
Sbjct: 11 KPLHEQLWYHGAIPRAEVAELLVHS--GDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSL 67
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCL 104
+ + F S+P +I H + P+ + L
Sbjct: 68 DNLYRL----EGEGFPSIPLLIDHLLSTQQPLTKKSGVVL 103
>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20
Structures
Length = 107
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNE--GSYLVRNSESNRPDYSLSLKS-----ARGFMHM 59
++ W+ ++R +AE L GS+++R+SE+ + YSLS++ H
Sbjct: 1 METEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 60
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
KI R D G F + S F ++ E++ H+ +
Sbjct: 61 KI-RTLDNGGFYISPRST-FSTLQELVDHYKKG 91
>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain
Length = 119
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSL 50
W HG++TR +AE +L R +GS+LVR SES Y+L +
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCV 51
>pdb|2HDV|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDV|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDX|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|C Chain C, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|D Chain D, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|E Chain E, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|F Chain F, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
Length = 111
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGS---YLVRNSESNRPDYSLSLKSARGFMH 58
+ +PL W+HG ++R +A ++ GS +LVR SE+ R + L+ H
Sbjct: 1 GSDQPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKH 60
Query: 59 MKIQRDPDTGKFILGQFSAP---FDSVPEMIQHFAENRLPI 96
+++ + GQ F S+ +M++HF + +P+
Sbjct: 61 LRLSLNAA------GQCRVQHLHFQSIFDMLEHFRVHPIPL 95
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
KPL ++ WYHG++ R E +L +S G +LVR S+ + +Y LS+ H IQ
Sbjct: 8 KPLHEQLWYHGAIPRAEVAELLVHS--GDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQ-S 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
D + G+ F S+P +I H + P+
Sbjct: 64 LDNLYRLEGE---GFPSIPLLIDHLLSTQQPL 92
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
KPL ++ WYHG++ R E +L +S G +LVR S+ + +Y LS+ H IQ
Sbjct: 8 KPLHEQLWYHGAIPRAEVAELLVHS--GDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQ-S 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
D + G+ F S+P +I H + P+
Sbjct: 64 LDNLYRLEGE---GFPSIPLLIDHLLSTQQPL 92
>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain
pdb|2AUG|B Chain B, Crystal Structure Of The Grb14 Sh2 Domain
Length = 126
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
W+H ++R EA+ ++ +G +LVR+S+SN + LS+ + H +I D G+
Sbjct: 28 WFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGE 87
Query: 70 FI--LGQFSAPFDSVPEMIQHFAENR 93
L F + ++++ + N+
Sbjct: 88 MFHTLDDGHTRFTDLIQLVEFYQLNK 113
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
++ +WY G ++R EA +L+ G +LVR+S ++ DY LS+ H I
Sbjct: 9 ERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 62
>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 109
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
+WY G ++R EA +L+ G +LVR+S ++ DY LS+ H I
Sbjct: 1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 51
>pdb|3PQZ|A Chain A, Grb7 Sh2 With Peptide
pdb|3PQZ|B Chain B, Grb7 Sh2 With Peptide
pdb|3PQZ|C Chain C, Grb7 Sh2 With Peptide
pdb|3PQZ|D Chain D, Grb7 Sh2 With Peptide
Length = 117
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
W+HG ++R E++ ++ +G +LVR S+ N + LSL + H I + G+
Sbjct: 16 WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 75
Query: 70 --FILGQFSAPFDSVPEMIQHFAENR--LPILGAEHMC 103
F + F + ++++ NR LP L H C
Sbjct: 76 LYFSMDDGQTRFTDLLQLVEFHQLNRGILPCL-LRHCC 112
>pdb|2L6K|A Chain A, Solution Structure Of A Nonphosphorylated Peptide
Recognizing Domain
Length = 123
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 10 RNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSA 53
+ WY ++R +A +L++ + G++L+R+S S + Y L+LK A
Sbjct: 5 KFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVA 48
>pdb|1MW4|A Chain A, Solution Structure Of The Human Grb7-Sh2 Domain In Complex
With A 10 Amino Acid Peptide Py1139
pdb|2QMS|A Chain A, Crystal Structure Of A Signaling Molecule
pdb|2QMS|B Chain B, Crystal Structure Of A Signaling Molecule
pdb|2QMS|C Chain C, Crystal Structure Of A Signaling Molecule
pdb|2QMS|D Chain D, Crystal Structure Of A Signaling Molecule
pdb|2L4K|A Chain A, Water Refined Solution Structure Of The Human Grb7-Sh2
Domain In Complex With The 10 Amino Acid Peptide Py1139
Length = 120
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
W+HG ++R E++ ++ +G +LVR S+ N + LSL + H I + G+
Sbjct: 19 WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 78
Query: 70 --FILGQFSAPFDSVPEMIQHFAENR--LPILGAEHMC 103
F + F + ++++ NR LP L H C
Sbjct: 79 LYFSMDDGQTRFTDLLQLVEFHQLNRGILPCL-LRHCC 115
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
++ +WY G ++R EA +L+ G +LVR+S ++ DY LS+ H I
Sbjct: 9 ERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 62
>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase
Length = 124
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
++ +WY G ++R EA +L+ G +LVR+S ++ DY LS+ H I
Sbjct: 8 ERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 61
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
++ +WY G ++R EA +L+ G +LVR+S ++ DY LS+ H I
Sbjct: 11 ERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 64
>pdb|2KNO|A Chain A, Nmr Solution Structure Of Sh2 Domain Of The Human Tensin
Like C1 Domain Containing Phosphatase (Tenc1)
Length = 131
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 10 RNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSA 53
+ WY ++R +A +L++ + G++L+R+S S + Y L+LK A
Sbjct: 20 KFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVA 63
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKS-----A 53
+A L+ W+ +++R +AE L + GS+L+R SES +SLS++
Sbjct: 57 VAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQG 116
Query: 54 RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFA 90
H KI R+ D G F + F + E+++H+
Sbjct: 117 EVVKHYKI-RNLDNGGFYISP-RITFPGLHELVRHYT 151
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKS-----A 53
+A L+ W+ +++R +AE L + GS+L+R SES +SLS++
Sbjct: 65 VAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQG 124
Query: 54 RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFA 90
H KI R+ D G F + F + E+++H+
Sbjct: 125 EVVKHYKI-RNLDNGGFYISP-RITFPGLHELVRHYT 159
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKS-----A 53
+A L+ W+ +++R +AE L + GS+L+R SES +SLS++
Sbjct: 65 VAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQG 124
Query: 54 RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFA 90
H KI R+ D G F + F + E+++H+
Sbjct: 125 EVVKHYKI-RNLDNGGFYISP-RITFPGLHELVRHYT 159
>pdb|1LCJ|A Chain A, Sh2 (Src Homology-2) Domain Of Human P56-Lck Tyrosine
Kinase Complexed With The 11 Residue Phosphotyrosyl
Peptide Epqpyeeipiyl
Length = 109
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKS-----A 53
MAN L+ W+ +++R +AE L + GS+L+R SES +SLS++
Sbjct: 1 MANS--LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQG 58
Query: 54 RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFA 90
H KI R+ D G F + F + E+++H+
Sbjct: 59 EVVKHYKI-RNLDNGGFYISP-RITFPGLHELVRHYT 93
>pdb|1LKK|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Ile (Pyeei
Peptide)
Length = 105
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 12 WYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRD 64
W+ +++R +AE L + GS+L+R SES +SLS++ H KI R+
Sbjct: 6 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKI-RN 64
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFA 90
D G F + F + E+++H+
Sbjct: 65 LDNGGFYISP-RITFPGLHELVRHYT 89
>pdb|1LKL|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Gly (Pyeeg
Peptide)
Length = 104
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 12 WYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRD 64
W+ +++R +AE L + GS+L+R SES +SLS++ H KI R+
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKI-RN 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFA 90
D G F + F + E+++H+
Sbjct: 64 LDNGGFYISP-RITFPGLHELVRHYT 88
>pdb|1BHF|A Chain A, P56lck Sh2 Domain Inhibitor Complex
pdb|1BHH|A Chain A, Free P56lck Sh2 Domain
Length = 108
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 12 WYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRD 64
W+ +++R +AE L + GS+L+R SES +SLS++ H KI R+
Sbjct: 9 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKI-RN 67
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFA 90
D G F + F + E+++H+
Sbjct: 68 LDNGGFYISP-RITFPGLHELVRHYT 92
>pdb|1BHH|B Chain B, Free P56lck Sh2 Domain
Length = 103
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 12 WYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRD 64
W+ +++R +AE L + GS+L+R SES +SLS++ H KI R+
Sbjct: 4 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKI-RN 62
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFA 90
D G F + F + E+++H+
Sbjct: 63 LDNGGFYISP-RITFPGLHELVRHYT 87
>pdb|1CWD|L Chain L, Human P56lck Tyrosine Kinase Complexed With
Phosphopeptide
pdb|1CWE|A Chain A, Human P56lck Tyrosine Kinase Complexed With
Phosphopeptide
pdb|1CWE|C Chain C, Human P56lck Tyrosine Kinase Complexed With
Phosphopeptide
Length = 98
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 11 NWYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQR 63
+W+ +++R +AE L + GS+L+R SES +SLS++ H KI R
Sbjct: 2 SWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKI-R 60
Query: 64 DPDTGKFILGQFSAPFDSVPEMIQHFA 90
+ D G F + F + E+++H+
Sbjct: 61 NLDNGGFYISP-RITFPGLHELVRHYT 86
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 YHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFIL 72
+HG ++R A+ +L + EGSYL+R S+ Y+L+L+ + ++ D GK +
Sbjct: 54 FHGMISREAADQLLIVA-EGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYD---GKHFV 109
Query: 73 GQFSAPFDSVPEMI 86
G+ F+S+ +++
Sbjct: 110 GE--KRFESIHDLV 121
>pdb|1D4T|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With
A Slam Peptide
pdb|1D4W|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D4W|B Chain B, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D1Z|A Chain A, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|B Chain B, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|C Chain C, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|D Chain D, Crystal Structure Of The Xlp Protein Sap
pdb|1M27|A Chain A, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 104
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
+D YHG ++R E +L + +GSYL+R+SES Y L + G+++
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLY-HGYIYTYRVSQT 59
Query: 66 DTGKF 70
+TG +
Sbjct: 60 ETGSW 64
>pdb|1KA6|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Py
pdb|1KA7|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Y-C
Length = 128
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
+D YHG ++R E +L + +GSYL+R+SES Y L + G+++
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVL-YHGYIYTYRVSQT 59
Query: 66 DTGKF 70
+TG +
Sbjct: 60 ETGSW 64
>pdb|1FBZ|A Chain A, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
pdb|1FBZ|B Chain B, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
Length = 104
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 12 WYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRD 64
W+ +++R +AE L + GS+L+R SES + LS++ H KI R+
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKI-RN 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFA 90
D G F + F + E+++H+
Sbjct: 64 LDNGGFYISP-RITFPGLHELVRHYT 88
>pdb|1IJR|A Chain A, Crystal Structure Of Lck Sh2 Complexed With Nonpeptide
Phosphotyrosine Mimetic
Length = 104
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 12 WYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRD 64
W+ +++R +AE L + GS+L+R SES + LS++ H KI R+
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKI-RN 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFA 90
D G F + F + E+++H+
Sbjct: 64 LDNGGFYISP-RITFPGLHELVRHYT 88
>pdb|1I3Z|A Chain A, Murine Eat2 Sh2 Domain In Complex With Slam
Phosphopeptide
Length = 103
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSES 41
+YHG +T+ E E +L + +G++L+R+SES
Sbjct: 5 YYHGCLTKRECEALLLKGGVDGNFLIRDSES 35
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 32.3 bits (72), Expect = 0.063, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 13 YHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFIL 72
+HG ++R +A+ +L EG+Y++R S+ Y+L+L+ ++ ++ D GK +
Sbjct: 58 FHGIISREQADELL-GGVEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHD---GKHFV 113
Query: 73 GQFSAPFDSVPEMI 86
G+ F+S+ +++
Sbjct: 114 GE--KRFESIHDLV 125
>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's Tyrosine
Kinase
Length = 125
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 7 LDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSL--KSA---RGFM-HM 59
++ WY +TR +AE +L+ EG ++VR+S S Y++S+ KS +G + H
Sbjct: 8 IEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIRHY 66
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPIL 97
+ P + ++ + F ++PE+I + N ++
Sbjct: 67 VVCSTPQSQYYLAEKH--LFSTIPELINYHQHNSAGLI 102
>pdb|2IZV|A Chain A, Crystal Structure Of Socs-4 In Complex With Elongin-B
And Elongin-C At 2.55a Resolution
Length = 187
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 13 YHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
Y G + ++ AE +L EG++L+R+S +S+S + +H +I++
Sbjct: 37 YWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQ 87
>pdb|2EO6|A Chain A, Solution Structure Of The Sh2 Domain From Mouse B-Cell
Linker Protein Blnk
Length = 141
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 12 WYHGSVTRHEAENILRNSN-EGSYLVRNS---ESNRPDYSLSLKSARGFMHMKIQRDPDT 67
WY G+ R AE L SN +GS+L+R S +S +P Y+L + ++ ++ T
Sbjct: 25 WYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQP-YTLVAFFNKRVYNIPVRFIEAT 83
Query: 68 GKFILGQFSAP---FDSVPEMIQHFAENRLPILGAEH 101
++ LG+ F SV E++ N L ++ +++
Sbjct: 84 KQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQN 120
>pdb|1RQQ|C Chain C, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|D Chain D, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
Length = 114
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 12 WYHGSVTRHEAENILRNS---NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG 68
W+HG+++R +A ++ + G +++R SE+ + L+ H+++ +
Sbjct: 13 WFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGH-- 70
Query: 69 KFILGQFSAP---FDSVPEMIQHFAENRLPI 96
GQ F SV +M++HF + +P+
Sbjct: 71 ----GQCHVQHLWFQSVFDMLRHFHTHPIPL 97
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 18 TRHEAEN-ILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFS 76
TR +A IL+ E +YLV + + SLK+ G++H+ I ++ T + + Q
Sbjct: 401 TRDKASAAILQQKGESAYLVFDDSIRK-----SLKAIEGYVHLNIVKEGKTIEELAKQID 455
Query: 77 AP 78
P
Sbjct: 456 VP 457
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 18 TRHEAEN-ILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFS 76
TR +A IL+ E +YLV + + SLK+ G++H+ I ++ T + + Q
Sbjct: 401 TRDKASAAILQQKGESAYLVFDDSIRK-----SLKAIEGYVHLNIVKEGKTIEELAKQID 455
Query: 77 AP 78
P
Sbjct: 456 VP 457
>pdb|3UKG|A Chain A, Crystal Structure Of Rap1DNA COMPLEX
Length = 242
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 45 DYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAP 78
DY+L++ + F Q DPDTG+ ++ P
Sbjct: 95 DYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTP 128
>pdb|1IGN|A Chain A, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
pdb|1IGN|B Chain B, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
Length = 246
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 45 DYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAP 78
DY+L++ + F Q DPDTG+ ++ P
Sbjct: 102 DYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTP 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,512,814
Number of Sequences: 62578
Number of extensions: 127451
Number of successful extensions: 464
Number of sequences better than 100.0: 158
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 171
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)