Query psy12508
Match_columns 113
No_of_seqs 139 out of 1037
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 21:04:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00173 SH2 Src homology 2 dom 100.0 1.8E-27 3.8E-32 140.4 12.2 94 11-108 1-94 (94)
2 smart00252 SH2 Src homology 2 100.0 4.3E-27 9.3E-32 136.4 11.8 83 10-94 1-83 (84)
3 PF00017 SH2: SH2 domain; Int 99.9 6.3E-26 1.4E-30 129.5 9.7 76 12-89 1-77 (77)
4 KOG4226|consensus 99.9 3E-23 6.5E-28 140.2 10.0 101 6-110 277-379 (379)
5 KOG4637|consensus 99.9 2E-23 4.4E-28 145.5 6.9 104 4-110 17-121 (464)
6 KOG0790|consensus 99.9 4.4E-22 9.4E-27 142.0 8.9 102 6-110 106-217 (600)
7 KOG4278|consensus 99.8 4.2E-21 9E-26 142.7 8.2 103 2-110 144-246 (1157)
8 KOG1264|consensus 99.8 4.5E-21 9.8E-26 144.4 7.3 101 3-112 641-742 (1267)
9 KOG4792|consensus 99.8 2.8E-20 6E-25 122.9 8.6 102 3-111 4-111 (293)
10 KOG2996|consensus 99.8 3.5E-19 7.6E-24 130.6 5.2 102 5-109 680-782 (865)
11 KOG1264|consensus 99.8 2.3E-18 5.1E-23 130.0 8.5 102 8-112 532-643 (1267)
12 KOG0197|consensus 99.7 1E-17 2.2E-22 121.5 8.7 100 4-109 75-184 (468)
13 KOG0194|consensus 99.7 3.3E-17 7.2E-22 119.7 10.1 101 6-112 45-151 (474)
14 KOG4637|consensus 99.7 6E-17 1.3E-21 113.4 5.4 99 10-111 332-431 (464)
15 KOG0790|consensus 99.6 6.3E-16 1.4E-20 110.8 7.5 98 9-109 3-103 (600)
16 KOG1930|consensus 99.6 6.8E-15 1.5E-19 104.5 5.7 89 9-98 211-315 (483)
17 KOG3601|consensus 99.5 2.7E-15 5.8E-20 98.3 -0.3 87 6-95 54-140 (222)
18 KOG3697|consensus 99.1 2.4E-10 5.2E-15 78.3 5.3 99 7-111 198-344 (345)
19 KOG3751|consensus 98.9 3.5E-10 7.5E-15 82.9 2.0 92 7-98 516-611 (622)
20 PF14633 SH2_2: SH2 domain; PD 98.8 5.1E-08 1.1E-12 65.5 8.2 79 9-90 37-122 (220)
21 KOG4566|consensus 98.2 3.6E-06 7.9E-11 57.7 5.9 87 6-94 48-140 (258)
22 KOG1856|consensus 97.9 3.2E-05 6.8E-10 61.8 5.7 83 8-91 1106-1193(1299)
23 PF14633 SH2_2: SH2 domain; PD 97.0 0.0027 5.8E-08 42.9 5.6 79 9-92 134-219 (220)
24 PF02762 Cbl_N3: CBL proto-onc 96.0 0.05 1.1E-06 30.7 5.9 45 10-54 2-48 (86)
25 KOG1856|consensus 95.2 0.075 1.6E-06 43.5 6.3 83 7-94 1202-1289(1299)
26 KOG3667|consensus 90.8 0.64 1.4E-05 36.3 5.0 52 11-62 564-616 (682)
27 smart00557 IG_FLMN Filamin-typ 87.4 1.2 2.5E-05 25.8 3.5 29 27-55 51-79 (93)
28 KOG1785|consensus 82.4 3.1 6.7E-05 30.9 4.4 45 10-54 256-302 (563)
29 KOG3508|consensus 78.9 1.3 2.9E-05 35.9 1.7 53 10-62 81-135 (932)
30 PF00630 Filamin: Filamin/ABP2 78.5 3.2 7E-05 23.9 3.0 26 29-54 67-92 (101)
31 COG5453 Uncharacterized conser 67.5 22 0.00048 20.7 4.7 55 30-96 27-86 (96)
32 PRK14129 heat shock protein Hs 66.2 3.9 8.5E-05 24.5 1.3 12 3-14 42-53 (105)
33 PF14822 Vasohibin: Vasohibin 59.3 22 0.00047 24.6 4.0 46 45-91 132-189 (246)
34 KOG0518|consensus 55.4 20 0.00044 29.9 3.9 26 29-54 904-929 (1113)
35 PF01067 Calpain_III: Calpain 46.5 34 0.00074 20.9 3.3 24 30-53 115-141 (147)
36 PF00408 PGM_PMM_IV: Phosphogl 46.3 19 0.0004 19.6 1.8 14 30-43 33-47 (73)
37 PF09430 DUF2012: Protein of u 45.7 32 0.0007 20.9 3.0 33 30-64 28-61 (123)
38 PF11422 IBP39: Initiator bind 45.7 21 0.00047 23.5 2.3 47 39-87 131-179 (181)
39 PF10505 NARG2_C: NMDA recepto 43.7 62 0.0013 22.1 4.3 22 29-52 143-164 (220)
40 KOG3508|consensus 42.4 30 0.00064 28.7 3.0 86 4-92 224-311 (932)
41 cd00214 Calpain_III Calpain, s 41.7 46 0.001 20.9 3.3 24 30-53 116-142 (150)
42 COG1724 Predicted RNA binding 40.9 42 0.00091 18.4 2.6 24 16-41 6-29 (66)
43 cd00122 MBD MeCP2, MBD1, MBD2, 40.5 55 0.0012 17.3 3.1 25 69-93 27-51 (62)
44 smart00720 calpain_III calpain 40.5 54 0.0012 20.2 3.5 23 30-52 111-136 (143)
45 PF11469 Ribonucleas_3_2: Ribo 38.4 19 0.00041 21.7 1.1 19 10-28 68-86 (120)
46 cd01396 MeCP2_MBD MeCP2, MBD1, 36.8 48 0.001 18.6 2.5 25 69-93 28-52 (77)
47 PF07935 SSV1_ORF_D-335: ORF D 34.2 76 0.0017 17.7 3.0 45 31-93 5-49 (72)
48 KOG2293|consensus 33.8 38 0.00083 26.2 2.3 72 15-93 472-543 (547)
49 PF13620 CarboxypepD_reg: Carb 32.9 75 0.0016 17.1 3.0 25 29-55 35-59 (82)
50 COG3592 Uncharacterized conser 32.4 59 0.0013 18.0 2.3 28 6-33 40-68 (74)
51 smart00604 MD MD domain. 30.2 1.5E+02 0.0033 18.9 4.2 26 30-55 5-30 (145)
52 PF06194 Phage_Orf51: Phage Co 29.8 1.1E+02 0.0024 17.2 4.4 43 52-98 23-73 (80)
53 PF14591 AF0941-like: AF0941-l 29.6 27 0.00059 21.7 0.8 16 12-27 53-68 (127)
54 COG3785 Uncharacterized conser 29.6 30 0.00065 20.8 0.9 11 6-16 55-65 (116)
55 PF01429 MBD: Methyl-CpG bindi 29.1 44 0.00095 18.5 1.6 25 69-93 33-57 (77)
56 KOG0518|consensus 25.0 4.5E+02 0.0097 22.7 7.1 45 19-63 18-67 (1113)
57 PF09625 VP9: VP9 protein; In 23.2 1.1E+02 0.0024 17.3 2.4 18 35-52 29-46 (79)
58 PF15517 TBPIP_N: TBP-interact 21.9 1.6E+02 0.0034 17.3 2.9 17 17-33 47-63 (99)
59 smart00391 MBD Methyl-CpG bind 21.7 1.6E+02 0.0035 16.4 4.4 26 69-94 30-55 (77)
60 TIGR03573 WbuX N-acetyl sugar 21.7 54 0.0012 23.7 1.3 19 14-33 300-318 (343)
61 PF13912 zf-C2H2_6: C2H2-type 21.5 85 0.0018 13.0 1.7 17 76-92 8-24 (27)
62 PF13106 DUF3961: Domain of un 21.1 54 0.0012 16.1 0.8 14 5-18 11-24 (40)
63 KOG4680|consensus 21.1 1.3E+02 0.0027 19.3 2.6 23 30-52 100-127 (153)
64 PF07576 BRAP2: BRCA1-associat 20.9 2.1E+02 0.0045 17.2 3.9 38 53-93 38-75 (110)
65 PF07240 Turandot: Stress-indu 20.5 87 0.0019 18.1 1.7 18 77-94 7-24 (85)
66 cd05860 Ig4_SCFR Fourth immuno 20.0 2.1E+02 0.0045 17.0 3.8 23 33-55 67-89 (101)
No 1
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=99.95 E-value=1.8e-27 Score=140.41 Aligned_cols=94 Identities=38% Similarity=0.731 Sum_probs=82.1
Q ss_pred CceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHHh
Q psy12508 11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFA 90 (113)
Q Consensus 11 ~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y~ 90 (113)
|||||.|+|++|+++|++.++|+||||.|.+.++.|+||++..++++|++|...+ ++.+... ....|+||.|||+||+
T Consensus 1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~-~~~~~~~-~~~~f~sl~eLv~~y~ 78 (94)
T cd00173 1 PWYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTD-DGYYLLG-EGRSFPSLPELIEHYQ 78 (94)
T ss_pred CccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECC-CCeEEec-CCCccCCHHHHHHHHh
Confidence 7999999999999999988999999999998889999999999999999999887 4444443 3579999999999999
Q ss_pred hCCcccCCCcceEecCcc
Q psy12508 91 ENRLPILGAEHMCLLHPM 108 (113)
Q Consensus 91 ~~~~~~~~~~~~~L~~pv 108 (113)
.+++ .+...+.|+.|+
T Consensus 79 ~~~~--~~~~~~~L~~p~ 94 (94)
T cd00173 79 KNPL--SDGLGVKLRYPV 94 (94)
T ss_pred hCcc--CCCcccEeCCcC
Confidence 9987 344577888875
No 2
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=99.95 E-value=4.3e-27 Score=136.39 Aligned_cols=83 Identities=41% Similarity=0.793 Sum_probs=76.5
Q ss_pred CCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHH
Q psy12508 10 RNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHF 89 (113)
Q Consensus 10 ~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y 89 (113)
+|||||.|+|++|+++|.+.++|+||||.|.+.++.|+||++..+.++|++|...+ +|.|.+.+ ...|+||.|||+||
T Consensus 1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~-~~~~~l~~-~~~F~sl~eLI~~y 78 (84)
T smart00252 1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNE-DGKFYLDG-GRKFPSLVELVEHY 78 (84)
T ss_pred CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECC-CCcEEECC-CCccCCHHHHHHHH
Confidence 58999999999999999887799999999998789999999999999999999876 57899987 68999999999999
Q ss_pred hhCCc
Q psy12508 90 AENRL 94 (113)
Q Consensus 90 ~~~~~ 94 (113)
+.+++
T Consensus 79 ~~~~~ 83 (84)
T smart00252 79 QKNSL 83 (84)
T ss_pred hhCCC
Confidence 98865
No 3
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=99.94 E-value=6.3e-26 Score=129.51 Aligned_cols=76 Identities=33% Similarity=0.720 Sum_probs=70.2
Q ss_pred ceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHH
Q psy12508 12 WYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHF 89 (113)
Q Consensus 12 w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y 89 (113)
||||.|+|++|+++|+. .++|+||||.|.+.++.|+||++..++++|++|.+.+ ++.|.+.+ ...|+||.+||+||
T Consensus 1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~-~~~~~~~~-~~~F~sl~~LV~~y 77 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTE-NGGYFLSD-GKKFPSLSDLVEHY 77 (77)
T ss_dssp TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEET-TSEEESST-SSEBSSHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecC-CceEEccC-CCcCCCHHHHHHhC
Confidence 99999999999999998 8999999999998889999999999999999999987 55577766 46799999999998
No 4
>KOG4226|consensus
Probab=99.90 E-value=3e-23 Score=140.24 Aligned_cols=101 Identities=33% Similarity=0.607 Sum_probs=91.2
Q ss_pred CCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508 6 PLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE 84 (113)
Q Consensus 6 ~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~ 84 (113)
.++.+|||.|.|+|.+||.+|.. +.+|+||||+|++++|+|++|++..++-+||++...+ +.|+++. +.|.++.+
T Consensus 277 ~~ag~~WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~d--~~ycIGq--RkF~tmd~ 352 (379)
T KOG4226|consen 277 RFAGRPWYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLVD--NVYCIGQ--RKFHTMDE 352 (379)
T ss_pred cccCCcceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEEec--ceEEecc--ceeccHHH
Confidence 47889999999999999999954 7999999999999999999999999999999999875 8999997 89999999
Q ss_pred HHHHHhhCCcccCC-CcceEecCcccc
Q psy12508 85 MIQHFAENRLPILG-AEHMCLLHPMIE 110 (113)
Q Consensus 85 lv~~y~~~~~~~~~-~~~~~L~~pv~~ 110 (113)
||+||++.++.... ++.+.|.+|+++
T Consensus 353 Lv~HY~kaPIfts~qgEKLyLvr~Lpk 379 (379)
T KOG4226|consen 353 LVEHYKKAPIFTSEQGEKLYLVRALPK 379 (379)
T ss_pred HHHhhhcCCceecCCCceEEEeccCCC
Confidence 99999999986654 466888888764
No 5
>KOG4637|consensus
Probab=99.89 E-value=2e-23 Score=145.53 Aligned_cols=104 Identities=30% Similarity=0.587 Sum_probs=94.4
Q ss_pred CCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508 4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP 83 (113)
Q Consensus 4 ~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~ 83 (113)
++++...+||||.|+|+++...|.+.++|+||||+..+.+|.|+|+++..+.++-++|.+.+ |+|.+.+ +-.|+|+.
T Consensus 17 ~~~L~~a~WYWgdisReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~D--gKyGF~d-~ltf~SVV 93 (464)
T KOG4637|consen 17 EDELQDAEWYWGDISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRD--GKYGFSD-PLTFNSVV 93 (464)
T ss_pred chhhhhccccccccCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEec--CccCCCC-chhhHHHH
Confidence 45688999999999999999999999999999999988889999999999999999999876 8888876 57999999
Q ss_pred HHHHHHhhCCcccCCCc-ceEecCcccc
Q psy12508 84 EMIQHFAENRLPILGAE-HMCLLHPMIE 110 (113)
Q Consensus 84 ~lv~~y~~~~~~~~~~~-~~~L~~pv~~ 110 (113)
+||+||...++...+.. .+.|.+||.+
T Consensus 94 elIn~yr~~SL~~yN~~LDvrLlyPVs~ 121 (464)
T KOG4637|consen 94 ELINHYRNESLAQYNPKLDVRLLYPVSR 121 (464)
T ss_pred HHHHHHhhhHHHhhCcccceeeechHHH
Confidence 99999999999877653 7999999976
No 6
>KOG0790|consensus
Probab=99.87 E-value=4.4e-22 Score=142.02 Aligned_cols=102 Identities=28% Similarity=0.575 Sum_probs=90.8
Q ss_pred CCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCC---------eeEEEEEEecCCCCcEEECcC
Q psy12508 6 PLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSAR---------GFMHMKIQRDPDTGKFILGQF 75 (113)
Q Consensus 6 ~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~---------~v~h~~I~~~~~~~~~~~~~~ 75 (113)
+-..+.||||.++..+||.||.. +.+|+||||.|.+.||+|+|||+..+ +|.|..|.+.+ ++|.+++
T Consensus 106 dptserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~--~kydVGg- 182 (600)
T KOG0790|consen 106 DPTSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQE--GKYDVGG- 182 (600)
T ss_pred CchhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecc--cccccCC-
Confidence 34456799999999999999954 79999999999999999999999754 79999999986 9999987
Q ss_pred CCCCCCHHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508 76 SAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIE 110 (113)
Q Consensus 76 ~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~ 110 (113)
+..|.|+.+||+||+++++...++.-+.|..|.+.
T Consensus 183 ge~F~sltdLidhykknpmvEt~gtvv~LrqP~na 217 (600)
T KOG0790|consen 183 GERFDSLTDLVEHYKKNPMVETLGTVVYLRQPLNA 217 (600)
T ss_pred ccccchHHHHHHHhccCchhhhcceeEEeeccccc
Confidence 68999999999999999998777777899999863
No 7
>KOG4278|consensus
Probab=99.85 E-value=4.2e-21 Score=142.72 Aligned_cols=103 Identities=33% Similarity=0.541 Sum_probs=91.2
Q ss_pred CCCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCC
Q psy12508 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDS 81 (113)
Q Consensus 2 ~~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~s 81 (113)
++..+|+.+.||||.++|..||.+|..+-+|.||||.|++.+|+|+||++..+.|.||+|.... +|+.++.. ...|.+
T Consensus 144 tPvNSLeKhsWYHGpvSRsaaEy~LsSgInGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~-dgK~yvt~-EsrF~T 221 (1157)
T KOG4278|consen 144 TPVNSLEKHSWYHGPVSRSAAEYILSSGINGSFLVRESESSPGQYSISLRYEGRVYHYRINTDN-DGKMYVTQ-ESRFRT 221 (1157)
T ss_pred ccccchhhcccccCccccchhhhhhhcCcccceEEeeccCCCcceeEEEEecceEEEEEeeccC-CccEEEee-hhhhhH
Confidence 4567899999999999999999999989999999999999999999999999999999999887 67766665 479999
Q ss_pred HHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508 82 VPEMIQHFAENRLPILGAEHMCLLHPMIE 110 (113)
Q Consensus 82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~ 110 (113)
|.|||.||+..... ..+.|.+|-++
T Consensus 222 LaELVHHHStvADG----LittLhYPApK 246 (1157)
T KOG4278|consen 222 LAELVHHHSTVADG----LITTLHYPAPK 246 (1157)
T ss_pred HHHHHhhccccccc----eeEeeeccCcc
Confidence 99999999988764 44578888765
No 8
>KOG1264|consensus
Probab=99.84 E-value=4.5e-21 Score=144.40 Aligned_cols=101 Identities=32% Similarity=0.681 Sum_probs=87.3
Q ss_pred CCCCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCC
Q psy12508 3 NPKPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDS 81 (113)
Q Consensus 3 ~~~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~s 81 (113)
++.+.+++||||...+|++||++|.. ..+|+|||| +...++.|+||++..++++||+|.+.+ ..|.++. ..|+|
T Consensus 641 qp~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR-~~~~~nsy~iSfr~~gkikHcRi~rdG--r~fvl~t--~~Fes 715 (1267)
T KOG1264|consen 641 QPNPHESKPWYHASLTREQAEDMLMRVPRDGAFLIR-KREGSNSYAISFRARGKIKHCRINRDG--RHFVLGT--SAFES 715 (1267)
T ss_pred CCCcccCCccccccccHHHHHHHHhhCccCcceEEE-eccCCceEEEEEEEcCcEeEEEEccCc--eEEEecc--HHHHH
Confidence 56789999999999999999999987 678999999 444468999999999999999999853 4566665 67999
Q ss_pred HHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508 82 VPEMIQHFAENRLPILGAEHMCLLHPMIEQL 112 (113)
Q Consensus 82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~ 112 (113)
|.+||+||.++++. .++.|.+||+.+.
T Consensus 716 Lv~lv~yY~k~~ly----R~mkLr~PVnee~ 742 (1267)
T KOG1264|consen 716 LVELVSYYEKHPLY----RKMKLRYPVNEEL 742 (1267)
T ss_pred HHHHHHHHhcChhh----hcccccCcCCHHH
Confidence 99999999999885 5778999998764
No 9
>KOG4792|consensus
Probab=99.83 E-value=2.8e-20 Score=122.93 Aligned_cols=102 Identities=27% Similarity=0.568 Sum_probs=86.2
Q ss_pred CCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCC------CCcEEECcCC
Q psy12508 3 NPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD------TGKFILGQFS 76 (113)
Q Consensus 3 ~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~------~~~~~~~~~~ 76 (113)
.=++.+...||+|.|+|+||..+|...+.|.||||+|.+.+|+|+|||+.+.+|.||.|..... ...+.+++
T Consensus 4 ~FD~~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIgd-- 81 (293)
T KOG4792|consen 4 NFDSSERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIGD-- 81 (293)
T ss_pred ccChhhccceecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeecc--
Confidence 3467788899999999999999999888999999999999999999999999999999987321 12578876
Q ss_pred CCCCCHHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508 77 APFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111 (113)
Q Consensus 77 ~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~ 111 (113)
+.|++|+.|++||+-+-+. .+.|..|.+|.
T Consensus 82 Q~Fd~lPaLL~fykihyLd-----tttLi~p~~r~ 111 (293)
T KOG4792|consen 82 QEFDSLPALLEFYKIHYLD-----TTTLIEPAKRS 111 (293)
T ss_pred ccccchHHHHhheeEeeec-----ccccccccccc
Confidence 8999999999999988773 44576776654
No 10
>KOG2996|consensus
Probab=99.77 E-value=3.5e-19 Score=130.60 Aligned_cols=102 Identities=26% Similarity=0.495 Sum_probs=89.1
Q ss_pred CCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE 84 (113)
Q Consensus 5 ~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~ 84 (113)
.++..+|||.|.|.|..||..|+..++|+||||.+....+.|+||++.++.|+|++|...+ |++.+.. ...|.|+.|
T Consensus 680 ~d~s~~~WyaG~MERaqaes~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~d--g~~~i~E-~k~F~sl~E 756 (865)
T KOG2996|consen 680 TDYSEFPWYAGEMERAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETND--GKVHITE-DKKFNSLVE 756 (865)
T ss_pred cchhhhhhhcchHhhhhhhhHhhcCCCceEEEEecccchhheeEEEEeccccceEEEEecC--CeEEech-hhhhhhHHH
Confidence 4677889999999999999999999999999999988888999999999999999999875 9999987 589999999
Q ss_pred HHHHHhhCCcccCC-CcceEecCccc
Q psy12508 85 MIQHFAENRLPILG-AEHMCLLHPMI 109 (113)
Q Consensus 85 lv~~y~~~~~~~~~-~~~~~L~~pv~ 109 (113)
||+||+.+++...- ...+.|+.|..
T Consensus 757 LVeyYq~~sLke~Fk~LDTtLk~Pyk 782 (865)
T KOG2996|consen 757 LVEYYQSHSLKEIFKALDTTLKFPYK 782 (865)
T ss_pred HHHHHHhccHHHHHHHhhhhhcCCCc
Confidence 99999999985321 23467777765
No 11
>KOG1264|consensus
Probab=99.76 E-value=2.3e-18 Score=130.01 Aligned_cols=102 Identities=35% Similarity=0.604 Sum_probs=86.5
Q ss_pred CCCCceeecCC-HHHHHHHhcC------CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCC--cEEECcCCCC
Q psy12508 8 DQRNWYHGSVT-RHEAENILRN------SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG--KFILGQFSAP 78 (113)
Q Consensus 8 ~~~~w~~g~i~-r~~ae~lL~~------~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~--~~~~~~~~~~ 78 (113)
-.+.||||.+- |.+|+.+|+. +++|+||||+|....|+|+||+...++|.|++|+...++| +|++.+ ...
T Consensus 532 ~~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~d-N~v 610 (1267)
T KOG1264|consen 532 FGEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTD-NLV 610 (1267)
T ss_pred cchhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEec-chh
Confidence 35689999998 9999999863 3799999999999999999999999999999998755334 677766 379
Q ss_pred CCCHHHHHHHHhhCCcccCCCc-ceEecCcccccC
Q psy12508 79 FDSVPEMIQHFAENRLPILGAE-HMCLLHPMIEQL 112 (113)
Q Consensus 79 F~sl~~lv~~y~~~~~~~~~~~-~~~L~~pv~~~~ 112 (113)
|.||.+||.||.++.+- +++ .+.|+-||+.+.
T Consensus 611 fdslY~LI~~Y~~~~Lr--~aeF~m~LtePvPqp~ 643 (1267)
T KOG1264|consen 611 FDSLYALIQHYRETHLR--CAEFEMRLTEPVPQPN 643 (1267)
T ss_pred HHHHHHHHHHHHhcccc--ccceEEEecCCCCCCC
Confidence 99999999999999764 334 689999998753
No 12
>KOG0197|consensus
Probab=99.74 E-value=1e-17 Score=121.48 Aligned_cols=100 Identities=29% Similarity=0.519 Sum_probs=82.4
Q ss_pred CCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCC------eeEEEEEEecCCCCcEE--EC
Q psy12508 4 PKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSAR------GFMHMKIQRDPDTGKFI--LG 73 (113)
Q Consensus 4 ~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~------~v~h~~I~~~~~~~~~~--~~ 73 (113)
..+++.+|||+|.|+|.+||+.|.. +..|+||||+|++.+|.|+|||+... .|+|++|...+ +|.+. +.
T Consensus 75 ~~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~-~~~~~~~~~ 153 (468)
T KOG0197|consen 75 FIKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLD-GGGLYPYID 153 (468)
T ss_pred ccccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcC-CCCeecCCC
Confidence 3789999999999999999975544 56699999999999999999999765 79999999987 45455 55
Q ss_pred cCCCCCCCHHHHHHHHhhCCcccCCCcceEecCccc
Q psy12508 74 QFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMI 109 (113)
Q Consensus 74 ~~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~ 109 (113)
. ...|+++.+||+||+.+...+.. .|..|+.
T Consensus 154 ~-~~~F~~l~~lv~~~~~~~~gl~~----~l~~p~~ 184 (468)
T KOG0197|consen 154 E-RELFSSLQQLVNYYSKNADGLCT----RLRDPCS 184 (468)
T ss_pred H-HHhhhhHHHHHhhhhccCcchhh----cccCchh
Confidence 5 47899999999999999886443 4555554
No 13
>KOG0194|consensus
Probab=99.73 E-value=3.3e-17 Score=119.69 Aligned_cols=101 Identities=30% Similarity=0.563 Sum_probs=84.1
Q ss_pred CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCC---cE-EEEEEeC--CeeEEEEEEecCCCCcEEECcCCCCC
Q psy12508 6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP---DY-SLSLKSA--RGFMHMKIQRDPDTGKFILGQFSAPF 79 (113)
Q Consensus 6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~---~~-~Lsv~~~--~~v~h~~I~~~~~~~~~~~~~~~~~F 79 (113)
.+..++||||.+.|++++.+|+ .+|+||||.|...++ .+ +||+.+. ..++||.|...+ +.++... ...|
T Consensus 45 ~~~~~~~yHG~l~red~~~lL~--~~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~--~~~~~~~-~~~F 119 (474)
T KOG0194|consen 45 DLRELPYYHGLLPREDAEKLLK--NDGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNG--NLFFFEG-LRKF 119 (474)
T ss_pred HhhcCccccccccHhHHHHHhC--CCCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcC--CeeEEec-cccC
Confidence 4556899999999999999999 699999999987654 34 8999985 778999999986 4444444 4899
Q ss_pred CCHHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508 80 DSVPEMIQHFAENRLPILGAEHMCLLHPMIEQL 112 (113)
Q Consensus 80 ~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~ 112 (113)
+++.+||.||..+..++.+. .+.|+.||+++.
T Consensus 120 ~si~~li~~~~~~~~~~~~~-~~~L~~PI~r~~ 151 (474)
T KOG0194|consen 120 PTISELVNYYKFSKLEITGK-NFFLKRPIPRQK 151 (474)
T ss_pred CcHHHHHHHHHhcccceecc-ceeecccccccc
Confidence 99999999999999987763 458999999875
No 14
>KOG4637|consensus
Probab=99.68 E-value=6e-17 Score=113.44 Aligned_cols=99 Identities=25% Similarity=0.432 Sum_probs=82.6
Q ss_pred CCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHH
Q psy12508 10 RNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHF 89 (113)
Q Consensus 10 ~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y 89 (113)
.-|+.+.+.|..||.+|+..++|+||||.|.. .|+|++||...+.|+||.|..+. .| |.+......+.||.+||.||
T Consensus 332 ~~w~~~~a~r~kAe~llrg~~dGtFLIR~ss~-~g~yalSV~~~~~V~HClIy~ta-tG-~GFa~pyn~y~tlk~lV~hY 408 (464)
T KOG4637|consen 332 KTWRVRDANRDKAEELLRGKPDGTFLIRESSK-GGCYALSVVHDGEVKHCLIYQTA-TG-FGFAEPYNLYSTLKELVLHY 408 (464)
T ss_pred hHhHHhhhhHHHHHHHhcCCCCCeEEEeeccC-CCceEEEEEECCceeeeEEeecc-cc-ccccchhHHHHHHHHHHHHH
Confidence 36999999999999999999999999999644 58999999999999999999987 44 44444456799999999999
Q ss_pred hhCCcccCC-CcceEecCccccc
Q psy12508 90 AENRLPILG-AEHMCLLHPMIEQ 111 (113)
Q Consensus 90 ~~~~~~~~~-~~~~~L~~pv~~~ 111 (113)
+..++...+ +..+.|..||--+
T Consensus 409 ~h~SLe~HnDal~ttLr~Pv~~~ 431 (464)
T KOG4637|consen 409 QHTSLEQHNDALTTTLRYPVFAQ 431 (464)
T ss_pred hhhhHHhhccccccccccceecc
Confidence 999885443 3468888887544
No 15
>KOG0790|consensus
Probab=99.64 E-value=6.3e-16 Score=110.84 Aligned_cols=98 Identities=31% Similarity=0.519 Sum_probs=85.7
Q ss_pred CCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHH
Q psy12508 9 QRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQ 87 (113)
Q Consensus 9 ~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~ 87 (113)
...|||..++..+||.||+. +.+|+||.|.|.++++.|+|+++.++++.|++|...+ +.|.+.+ +..|.+++|||+
T Consensus 3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~--~~~~l~~-gekfat~~ELvq 79 (600)
T KOG0790|consen 3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSG--DFYDLYG-GEKFATLAELVQ 79 (600)
T ss_pred chhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecC--ccccccC-CccccchHHHHH
Confidence 46799999999999999986 7999999999999999999999999999999998765 5677776 689999999999
Q ss_pred HHhhCCcccC--CCcceEecCccc
Q psy12508 88 HFAENRLPIL--GAEHMCLLHPMI 109 (113)
Q Consensus 88 ~y~~~~~~~~--~~~~~~L~~pv~ 109 (113)
||+.+...+. ++.-+.|++|++
T Consensus 80 yyme~~~~lkekng~~ielK~pl~ 103 (600)
T KOG0790|consen 80 YYMEHHGQLKEKNGDVIELKYPLN 103 (600)
T ss_pred HHHhhhHHHHhcCCCEEEecCCCc
Confidence 9999885554 334588999875
No 16
>KOG1930|consensus
Probab=99.55 E-value=6.8e-15 Score=104.50 Aligned_cols=89 Identities=27% Similarity=0.480 Sum_probs=74.1
Q ss_pred CCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEe----------C-----CeeEEEEEEecCCCC-cEEE
Q psy12508 9 QRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKS----------A-----RGFMHMKIQRDPDTG-KFIL 72 (113)
Q Consensus 9 ~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~----------~-----~~v~h~~I~~~~~~~-~~~~ 72 (113)
..=||..+|+|++|..||++.++|+||||+|.+.+|.|-|.++. + .-|+||.|+... .| +..-
T Consensus 211 SKyWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~sp-kGVkLKG 289 (483)
T KOG1930|consen 211 SKYWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSP-KGVKLKG 289 (483)
T ss_pred cccccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCC-CceeccC
Confidence 44699999999999999999999999999999999999999984 1 238999999876 33 2322
Q ss_pred CcCCCCCCCHHHHHHHHhhCCcccCC
Q psy12508 73 GQFSAPFDSVPEMIQHFAENRLPILG 98 (113)
Q Consensus 73 ~~~~~~F~sl~~lv~~y~~~~~~~~~ 98 (113)
..+...|.||..||--|+-.++.|.+
T Consensus 290 C~nEP~FGSLSALV~QHSIt~LALPc 315 (483)
T KOG1930|consen 290 CDNEPVFGSLSALVYQHSITALALPC 315 (483)
T ss_pred CCCCCccchhHHHHhhccchhhhcce
Confidence 33458999999999999998887766
No 17
>KOG3601|consensus
Probab=99.49 E-value=2.7e-15 Score=98.28 Aligned_cols=87 Identities=28% Similarity=0.511 Sum_probs=78.9
Q ss_pred CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508 6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM 85 (113)
Q Consensus 6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l 85 (113)
....++||+|.++|..||++|....+|+||+|.+.+.+|.|.++++....|+|+++.+.. .++|++.. ..|+++.++
T Consensus 54 ~~~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa-~~k~~lw~--skfnslnpl 130 (222)
T KOG3601|consen 54 RMKPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPA-FGKYFLWS--SKFNSLNPL 130 (222)
T ss_pred ccccccceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCceeccccccC-ccccccch--hhccCCCCC
Confidence 445789999999999999999888999999999999999999999999999999999876 68899886 699999999
Q ss_pred HHHHhhCCcc
Q psy12508 86 IQHFAENRLP 95 (113)
Q Consensus 86 v~~y~~~~~~ 95 (113)
++||..+...
T Consensus 131 v~Y~rt~s~~ 140 (222)
T KOG3601|consen 131 VSYHRTASQS 140 (222)
T ss_pred cccCcccccc
Confidence 9999877653
No 18
>KOG3697|consensus
Probab=99.07 E-value=2.4e-10 Score=78.32 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=81.1
Q ss_pred CCCCCceeecCCHHHHHHHhcCCCCceEEEEecC----------------------------------------------
Q psy12508 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSE---------------------------------------------- 40 (113)
Q Consensus 7 l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~---------------------------------------------- 40 (113)
....|||+|.++++.++..|+ ++|.|++|.+.
T Consensus 198 p~k~pp~~g~l~~~~~q~~l~--~~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~ 275 (345)
T KOG3697|consen 198 PSKMPPPGGFLDTRLKQRPLA--PDAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDE 275 (345)
T ss_pred cccCCCCCCccchhhhhccCC--cccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhccc
Confidence 446799999999999999998 88999988643
Q ss_pred -CCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHHhhCCcccCCCc-ceEecCccccc
Q psy12508 41 -SNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHPMIEQ 111 (113)
Q Consensus 41 -~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y~~~~~~~~~~~-~~~L~~pv~~~ 111 (113)
..+|+|+|+-...+.-+|..+.-- +|..... ...|+|+.-||.||+.+.+++..+. .+.|.+||.|+
T Consensus 276 ~~~~gqyvltgl~~~~~khlllvdp--egvvrtk--d~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r~ 344 (345)
T KOG3697|consen 276 TTTPGQYVLTGLQSGQPKHLLLVDP--EGVVRTK--DRRFDSISHLINYHMDNHLPIISAGSELCLQQPVERK 344 (345)
T ss_pred cCCCccEEEecccCCCcceEEEECC--ccceecc--cchhhHHHHHHHHhhhccCceecCcchhhhhCccccc
Confidence 346788888888888999887643 3655554 4899999999999999999987544 58999999875
No 19
>KOG3751|consensus
Probab=98.94 E-value=3.5e-10 Score=82.90 Aligned_cols=92 Identities=25% Similarity=0.497 Sum_probs=76.2
Q ss_pred CCCCCceeecCCHHHHHHHhcCC--CCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCc--EEECcCCCCCCCH
Q psy12508 7 LDQRNWYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK--FILGQFSAPFDSV 82 (113)
Q Consensus 7 l~~~~w~~g~i~r~~ae~lL~~~--~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~--~~~~~~~~~F~sl 82 (113)
...+.||||.|+|+++.+++++. -+|.|++|.|.++|..|++++....+++||+|...+++|. +.+......|.++
T Consensus 516 h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~sd~ 595 (622)
T KOG3751|consen 516 HRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFSDL 595 (622)
T ss_pred cccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCcccccc
Confidence 45679999999999999988863 7799999999999999999999999999999998765553 3334334789999
Q ss_pred HHHHHHHhhCCcccCC
Q psy12508 83 PEMIQHFAENRLPILG 98 (113)
Q Consensus 83 ~~lv~~y~~~~~~~~~ 98 (113)
..|+++|+-++-++.+
T Consensus 596 ~ql~~~~ql~k~~l~~ 611 (622)
T KOG3751|consen 596 IQLVEFYQLNKGVLPC 611 (622)
T ss_pred ccccchhhcCCCcchH
Confidence 9999999887655443
No 20
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=98.79 E-value=5.1e-08 Score=65.48 Aligned_cols=79 Identities=14% Similarity=0.373 Sum_probs=60.0
Q ss_pred CCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEe-CCeeEEEEEEecCCCC------cEEECcCCCCCCC
Q psy12508 9 QRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKS-ARGFMHMKIQRDPDTG------KFILGQFSAPFDS 81 (113)
Q Consensus 9 ~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~-~~~v~h~~I~~~~~~~------~~~~~~~~~~F~s 81 (113)
.+|-|+ +++-.+|++.|.+.+.|.+|||+|.......+++++. .+..+|+.|.-.+..+ .+.+++ ..|.+
T Consensus 37 ~HP~F~-n~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~~--~~yeD 113 (220)
T PF14633_consen 37 KHPLFK-NFNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIGG--EEYED 113 (220)
T ss_dssp CSTTEE-SS-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEETT--EEESS
T ss_pred cCCCcc-CCCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEECC--eEECC
Confidence 458888 9999999999998888999999999877788999996 4557899997654222 355554 79999
Q ss_pred HHHHHHHHh
Q psy12508 82 VPEMIQHFA 90 (113)
Q Consensus 82 l~~lv~~y~ 90 (113)
|.|||.-|.
T Consensus 114 LDEii~r~V 122 (220)
T PF14633_consen 114 LDEIIARHV 122 (220)
T ss_dssp HHHHHHHCH
T ss_pred HHHHHHHHH
Confidence 999998874
No 21
>KOG4566|consensus
Probab=98.23 E-value=3.6e-06 Score=57.75 Aligned_cols=87 Identities=30% Similarity=0.462 Sum_probs=67.4
Q ss_pred CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECc-----CC-CCC
Q psy12508 6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQ-----FS-APF 79 (113)
Q Consensus 6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~-----~~-~~F 79 (113)
.+...+||||.+++++|+..|...+.|+|+||+|...+--+.|+++...+-+..+|...+ +.+.... .. ..|
T Consensus 48 ~~~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~--~sfr~ds~~~~~~pl~~~ 125 (258)
T KOG4566|consen 48 LLDSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQD--SSFRLDSSHRHTPPLISF 125 (258)
T ss_pred ccccCCcccccccchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccc--cceecccccccCCCcccC
Confidence 345668999999999999888888999999999998777789999987776666776553 4444311 12 479
Q ss_pred CCHHHHHHHHhhCCc
Q psy12508 80 DSVPEMIQHFAENRL 94 (113)
Q Consensus 80 ~sl~~lv~~y~~~~~ 94 (113)
+.+..++.+|+....
T Consensus 126 e~~~~~~~~y~~~~~ 140 (258)
T KOG4566|consen 126 EDVEVLIHHYRQSRK 140 (258)
T ss_pred hhHHHHHHhhhhhhh
Confidence 999999999965443
No 22
>KOG1856|consensus
Probab=97.88 E-value=3.2e-05 Score=61.85 Aligned_cols=83 Identities=18% Similarity=0.367 Sum_probs=64.4
Q ss_pred CCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeC-CeeEEEEEEecCCCCcEEECc----CCCCCCCH
Q psy12508 8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSA-RGFMHMKIQRDPDTGKFILGQ----FSAPFDSV 82 (113)
Q Consensus 8 ~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~-~~v~h~~I~~~~~~~~~~~~~----~~~~F~sl 82 (113)
-.+|.|+ +++-++|+.+|.+...|.++||+|.......+++.+.. +..+|+.|.-.+..+.|.++. .+..|..|
T Consensus 1106 I~HP~F~-n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDL 1184 (1299)
T KOG1856|consen 1106 IAHPLFK-NLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDL 1184 (1299)
T ss_pred hcCcccc-CCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccH
Confidence 3578998 99999999999988899999999998777888888865 456788886543233333332 23799999
Q ss_pred HHHHHHHhh
Q psy12508 83 PEMIQHFAE 91 (113)
Q Consensus 83 ~~lv~~y~~ 91 (113)
.|+|.-|.+
T Consensus 1185 DEiI~r~vq 1193 (1299)
T KOG1856|consen 1185 DEIIARYVQ 1193 (1299)
T ss_pred HHHHHHHHH
Confidence 999987754
No 23
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=96.98 E-value=0.0027 Score=42.94 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=52.9
Q ss_pred CCCceeecCCHHHHHHHhcC----CC-CceEEEEecCCCCCcEEEEEEeCCeeEEEE--EEecCCCCcEEECcCCCCCCC
Q psy12508 9 QRNWYHGSVTRHEAENILRN----SN-EGSYLVRNSESNRPDYSLSLKSARGFMHMK--IQRDPDTGKFILGQFSAPFDS 81 (113)
Q Consensus 9 ~~~w~~g~i~r~~ae~lL~~----~~-~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~--I~~~~~~~~~~~~~~~~~F~s 81 (113)
.++.|.. -+++++++.|.. .+ --.|.+..+...||.|.|+...+...+|.. |...+ +| |.+.+ ..|++
T Consensus 134 ~h~kf~~-g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~v~V~p-~G-f~~r~--~~f~~ 208 (220)
T PF14633_consen 134 NHRKFKD-GTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKPNKNPRHEYWPVKVTP-DG-FRFRK--QVFPS 208 (220)
T ss_dssp CSTTEES-S-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEESSTTS-EEEEEEEE-S-SS-EEETT--EEESS
T ss_pred hCccccC-CCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEcCCCCceEEeeEEEec-Cc-EEEec--ccCCC
Confidence 4556653 467777887864 22 256888888888999999999765544433 66665 34 55654 79999
Q ss_pred HHHHHHHHhhC
Q psy12508 82 VPEMIQHFAEN 92 (113)
Q Consensus 82 l~~lv~~y~~~ 92 (113)
|.+|+.+++.+
T Consensus 209 ~~~L~~~FK~~ 219 (220)
T PF14633_consen 209 LDRLINWFKKH 219 (220)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999998764
No 24
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=96.05 E-value=0.05 Score=30.71 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=36.2
Q ss_pred CCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCC
Q psy12508 10 RNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSAR 54 (113)
Q Consensus 10 ~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~ 54 (113)
+|-|...++=+|+...|+. ..+|+|+.|-|....|++++-....+
T Consensus 2 HpgY~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~d 48 (86)
T PF02762_consen 2 HPGYMAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQD 48 (86)
T ss_dssp -TTBETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEETT
T ss_pred CCceeEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEcCC
Confidence 4667888999999999975 58899999999999999999887653
No 25
>KOG1856|consensus
Probab=95.23 E-value=0.075 Score=43.54 Aligned_cols=83 Identities=20% Similarity=0.383 Sum_probs=61.2
Q ss_pred CCCCCceeecCCHHHHHHHhcC--CCCce---EEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCC
Q psy12508 7 LDQRNWYHGSVTRHEAENILRN--SNEGS---YLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDS 81 (113)
Q Consensus 7 l~~~~w~~g~i~r~~ae~lL~~--~~~G~---FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~s 81 (113)
+..+.+|. .=++.+.|++|.. ..++. |...-|...||.|.|+.+...+++|=-|...+ .| |.+.+ +.|+|
T Consensus 1202 m~nhkyf~-~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p-~g-~~~rg--~~f~t 1276 (1299)
T KOG1856|consen 1202 MTNHKYFF-TGTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVP-EG-FRFRG--QNFGT 1276 (1299)
T ss_pred HHhhhHhh-cCCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcc-cc-eEEec--ccchh
Confidence 34456666 3358889998874 34444 44456667799999999999888888877776 45 44444 79999
Q ss_pred HHHHHHHHhhCCc
Q psy12508 82 VPEMIQHFAENRL 94 (113)
Q Consensus 82 l~~lv~~y~~~~~ 94 (113)
|.+|+.+++.+-.
T Consensus 1277 ld~L~~~FK~h~~ 1289 (1299)
T KOG1856|consen 1277 LDELCRWFKRHYK 1289 (1299)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 26
>KOG3667|consensus
Probab=90.81 E-value=0.64 Score=36.35 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=39.8
Q ss_pred CceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCe-eEEEEEE
Q psy12508 11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARG-FMHMKIQ 62 (113)
Q Consensus 11 ~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~-v~h~~I~ 62 (113)
-...|.+++..+..+|...++|+|++|.|++..|..+++-....+ ..|+.|.
T Consensus 564 g~Imgfinkq~~~~ll~~~~~GtflLrfs~S~~GgiT~~~v~~~~~~~~~~i~ 616 (682)
T KOG3667|consen 564 GVIMGFINKQQERALLMTKPDGTFLLRFSASEEGGITIAWVEDQKQNLIMMIM 616 (682)
T ss_pred ceeeeecchhhhhhhhhcCCCCCceeeeeccccCceeEEecccccccceeEec
Confidence 445789999999999988899999999999887776655553322 3567776
No 27
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=87.41 E-value=1.2 Score=25.77 Aligned_cols=29 Identities=21% Similarity=0.511 Sum_probs=23.4
Q ss_pred cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508 27 RNSNEGSYLVRNSESNRPDYSLSLKSARG 55 (113)
Q Consensus 27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~ 55 (113)
.+..+|+|.+.-.+...|.|.|+++.++.
T Consensus 51 ~d~~dGty~v~y~P~~~G~~~i~V~~~g~ 79 (93)
T smart00557 51 KDNGDGTYTVSYTPTEPGDYTVTVKFGGE 79 (93)
T ss_pred EeCCCCEEEEEEEeCCCEeEEEEEEECCE
Confidence 45678999999888888889998887653
No 28
>KOG1785|consensus
Probab=82.36 E-value=3.1 Score=30.92 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=37.8
Q ss_pred CCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCC
Q psy12508 10 RNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSAR 54 (113)
Q Consensus 10 ~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~ 54 (113)
+|=|...++=+|+...|+. ..+|+|+.|.|....|+++|-....+
T Consensus 256 HPGYmAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRlGQWAIGYVt~d 302 (563)
T KOG1785|consen 256 HPGYMAFLTYDEVKARLQKYIKKPGSYIFRLSCTRLGQWAIGYVTAD 302 (563)
T ss_pred CCceeEEeeHHHHHHHHHHHhcCCCceEEeeccCcccceeEEEEcCC
Confidence 4667788898998888865 58999999999999999999888643
No 29
>KOG3508|consensus
Probab=78.87 E-value=1.3 Score=35.93 Aligned_cols=53 Identities=30% Similarity=0.439 Sum_probs=42.1
Q ss_pred CCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeC-CeeEEEEEE
Q psy12508 10 RNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSA-RGFMHMKIQ 62 (113)
Q Consensus 10 ~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~-~~v~h~~I~ 62 (113)
..||||++.|.-++..++. .+.|.++||.+...++.+.++.-.+ +.+-|+++.
T Consensus 81 ~~~~~~~lrr~i~e~r~r~~e~s~~~wi~e~~~lp~~~~l~~~~~~d~~l~~r~~ 135 (932)
T KOG3508|consen 81 RKWYMENLRRTIAESRLRRAENSGSYWIREAKRLPGKGKLSCLLQLDGTLYARTI 135 (932)
T ss_pred hhhhhcchhhhcccchhhccCCceeEEeeccCcCCCcceeehhhccchhHHhhhh
Confidence 4799999999999998766 4779999999999888888777643 236666654
No 30
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=78.55 E-value=3.2 Score=23.85 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=17.6
Q ss_pred CCCceEEEEecCCCCCcEEEEEEeCC
Q psy12508 29 SNEGSYLVRNSESNRPDYSLSLKSAR 54 (113)
Q Consensus 29 ~~~G~FLvR~s~~~~~~~~Lsv~~~~ 54 (113)
..+|.|.|+-....+|.|.|+|+.++
T Consensus 67 ~~~G~y~v~y~p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 67 NGDGTYTVSYTPTEPGKYKISVKING 92 (101)
T ss_dssp ESSSEEEEEEEESSSEEEEEEEEESS
T ss_pred CCCCEEEEEEEeCccEeEEEEEEECC
Confidence 35677777777666677777776654
No 31
>COG5453 Uncharacterized conserved protein [Function unknown]
Probab=67.51 E-value=22 Score=20.70 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=34.5
Q ss_pred CCceEEEEecCC-CCCcEEEEEEe----CCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHHhhCCccc
Q psy12508 30 NEGSYLVRNSES-NRPDYSLSLKS----ARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96 (113)
Q Consensus 30 ~~G~FLvR~s~~-~~~~~~Lsv~~----~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y~~~~~~~ 96 (113)
..++|||+..+- ..|+|-++-+- ++.++-++ |.-. -.|.++.|-++.-.+....+
T Consensus 27 ehkdflI~atP~~eggQyr~aG~I~k~idgevk~h~---------FiRa---D~ft~~~DAve~~lkKg~qi 86 (96)
T COG5453 27 EHKDFLIYATPISEGGQYRLAGRIEKEIDGEVKVHR---------FIRA---DLFTSLDDAVEIALKKGRQI 86 (96)
T ss_pred cccCeEEEeeecccCCeEEEeeEeeeecCceeeeee---------eeeh---hhccchhHHHHHHHHHHHHH
Confidence 558999998884 45678766543 22333222 2222 37899999888876655443
No 32
>PRK14129 heat shock protein HspQ; Provisional
Probab=66.18 E-value=3.9 Score=24.46 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=9.2
Q ss_pred CCCCCCCCCcee
Q psy12508 3 NPKPLDQRNWYH 14 (113)
Q Consensus 3 ~~~~l~~~~w~~ 14 (113)
...++.++||||
T Consensus 42 ~~~p~kdqPwYH 53 (105)
T PRK14129 42 VNDELRAAPWYH 53 (105)
T ss_pred cCCCccCCCceE
Confidence 446778889998
No 33
>PF14822 Vasohibin: Vasohibin
Probab=59.31 E-value=22 Score=24.64 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=29.3
Q ss_pred cEEEEEEeC--C-eeEEEEEEecCCCCcEEECc---------CCCCCCCHHHHHHHHhh
Q psy12508 45 DYSLSLKSA--R-GFMHMKIQRDPDTGKFILGQ---------FSAPFDSVPEMIQHFAE 91 (113)
Q Consensus 45 ~~~Lsv~~~--~-~v~h~~I~~~~~~~~~~~~~---------~~~~F~sl~~lv~~y~~ 91 (113)
-|.|++++. + ..+|+.+.... +|.|.--+ ..-.|.++.+||.-|..
T Consensus 132 Rfpi~Fks~~~g~~~~HIVL~v~~-~~~~GalGlSRr~~Lm~k~l~~~sls~li~~y~~ 189 (246)
T PF14822_consen 132 RFPISFKSQFSGRVFRHIVLGVRC-GGKYGALGLSRRSDLMYKPLEFRSLSDLIFDYKE 189 (246)
T ss_pred EeeceeEEEEcCcEEEEEEEEEEE-CCeecccccccchhhcccchhhHHHHHHHHHHHH
Confidence 477888862 3 36676554433 46664333 23479999999998865
No 34
>KOG0518|consensus
Probab=55.41 E-value=20 Score=29.94 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCCceEEEEecCCCCCcEEEEEEeCC
Q psy12508 29 SNEGSYLVRNSESNRPDYSLSLKSAR 54 (113)
Q Consensus 29 ~~~G~FLvR~s~~~~~~~~Lsv~~~~ 54 (113)
..+|+|-||..+..+|.|+|+|.+++
T Consensus 904 ~~~~~y~vrFtP~e~G~~tl~V~y~~ 929 (1113)
T KOG0518|consen 904 LGQGTYQVRFTPKEPGNHTLSVKYKD 929 (1113)
T ss_pred CCCceEEEEecCCCCCceEEEEEecC
Confidence 47899999999999999999999854
No 35
>PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. This entry represents domain III. It is found in association with PF00648 from PFAM. The function of the domain III and I are currently unknown. Domain II is a cysteine protease and domain IV is a calcium binding domain. Calpains are believed to participate in intracellular signaling pathways mediated by calcium ions. ; PDB: 1QXP_B 2QFE_A 1DF0_A 1U5I_A 3DF0_A 3BOW_A 1KFU_L 1KFX_L.
Probab=46.48 E-value=34 Score=20.94 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=13.2
Q ss_pred CCceEEEEecCCC---CCcEEEEEEeC
Q psy12508 30 NEGSYLVRNSESN---RPDYSLSLKSA 53 (113)
Q Consensus 30 ~~G~FLvR~s~~~---~~~~~Lsv~~~ 53 (113)
++|+|+|=+|.-. .+.|.|.+.+.
T Consensus 115 ~~G~YvIVPsT~~~~~~g~F~L~v~s~ 141 (147)
T PF01067_consen 115 PPGTYVIVPSTYEPGQEGEFTLRVFSD 141 (147)
T ss_dssp -SEEEEEEEEESSTT--EEEEEEEEES
T ss_pred CCCCEEEEEecCCCCCeeeEEEEEEEC
Confidence 5667777766433 34566666554
No 36
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=46.29 E-value=19 Score=19.63 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=12.5
Q ss_pred CCceEE-EEecCCCC
Q psy12508 30 NEGSYL-VRNSESNR 43 (113)
Q Consensus 30 ~~G~FL-vR~s~~~~ 43 (113)
.+|..| ||.|.+.|
T Consensus 33 ~dG~~l~vR~SgTEP 47 (73)
T PF00408_consen 33 EDGWRLLVRPSGTEP 47 (73)
T ss_dssp TTEEEEEEEEESSSS
T ss_pred CCceEEEEECCCCCc
Confidence 889999 99998876
No 37
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=45.74 E-value=32 Score=20.92 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=23.0
Q ss_pred CCceEEEEecCCCCCcEEEEEEeCCe-eEEEEEEec
Q psy12508 30 NEGSYLVRNSESNRPDYSLSLKSARG-FMHMKIQRD 64 (113)
Q Consensus 30 ~~G~FLvR~s~~~~~~~~Lsv~~~~~-v~h~~I~~~ 64 (113)
.+|+|.+++=+. |.|.|.|.+.+- ...++|...
T Consensus 28 ~dG~F~f~~Vp~--GsY~L~V~s~~~~F~~~RVdV~ 61 (123)
T PF09430_consen 28 SDGSFVFHNVPP--GSYLLEVHSPDYVFPPYRVDVS 61 (123)
T ss_pred CCCEEEeCCCCC--ceEEEEEECCCccccCEEEEEe
Confidence 789999987655 789998886543 344555544
No 38
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=45.74 E-value=21 Score=23.49 Aligned_cols=47 Identities=17% Similarity=0.341 Sum_probs=22.7
Q ss_pred cCCCCCcEEEEEEe-CCeeEEE-EEEecCCCCcEEECcCCCCCCCHHHHHH
Q psy12508 39 SESNRPDYSLSLKS-ARGFMHM-KIQRDPDTGKFILGQFSAPFDSVPEMIQ 87 (113)
Q Consensus 39 s~~~~~~~~Lsv~~-~~~v~h~-~I~~~~~~~~~~~~~~~~~F~sl~~lv~ 87 (113)
+...++++ +++. ++.+.|+ ..-.....|.|-+..++..|.|..+.++
T Consensus 131 ~~t~~NC~--i~k~~~g~~~~vyN~P~i~s~~~YlvdE~g~~f~SW~~~fq 179 (181)
T PF11422_consen 131 DNTEPNCF--IFKWSNGGTFHVYNLPLISSDGQYLVDENGENFDSWEKFFQ 179 (181)
T ss_dssp ESSSTTEE--EEEETTE-EEEEEE-TTS-TTS--EEETT--EES-HHHHHH
T ss_pred ccCCCceE--EEEecCCcEEEEecccccCCCcceeEcCCCcchhhHHHHHh
Confidence 34445554 4444 3434444 2211223588999988888999988765
No 39
>PF10505 NARG2_C: NMDA receptor-regulated gene protein 2 C-terminus; InterPro: IPR019535 The transition of neuronal cells from pre-cursor to mature state is regulated by the N-methyl-d-aspartate (NMDA) receptor, a glutamate-gated ion channel that is permeable to Ca2+. NMDA receptors probably mediate this activity by permitting expression of NARG2. NARG2 (NMDA receptor-regulated gene protein 2) is transiently expressed, being a regulatory protein that is present in the nucleus of dividing cells and then down-regulated as progenitors exit the cell cycle and begin to differentiate. NARG2 contains repeats of (S/T)PXX, (11 in mouse, 6 in human), a putative DNA-binding motif that is found in many gene-regulatory proteins including Kruppel, Hunchback and Antennapedi [].
Probab=43.68 E-value=62 Score=22.10 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=16.4
Q ss_pred CCCceEEEEecCCCCCcEEEEEEe
Q psy12508 29 SNEGSYLVRNSESNRPDYSLSLKS 52 (113)
Q Consensus 29 ~~~G~FLvR~s~~~~~~~~Lsv~~ 52 (113)
-++|.||+|.... +.|++..+.
T Consensus 143 L~pG~YLLrh~~~--d~f~~i~k~ 164 (220)
T PF10505_consen 143 LQPGSYLLRHTPG--DSFVLIYKS 164 (220)
T ss_pred CCCCcEEEEecCC--CCcEEEEEc
Confidence 4899999999984 456655554
No 40
>KOG3508|consensus
Probab=42.45 E-value=30 Score=28.66 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=53.5
Q ss_pred CCCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCH
Q psy12508 4 PKPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSV 82 (113)
Q Consensus 4 ~~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl 82 (113)
++.....+|++++|...+|...|.. ...+.|++|.+...++.|.+-......+.|+.+.... ...|..+. ..++.+
T Consensus 224 ~~~~~~ar~q~i~i~~~e~y~~~~e~~~~~y~~lc~~lnp~l~~~~kEe~a~aLvr~l~s~~~-ak~fl~Dl--~~~e~~ 300 (932)
T KOG3508|consen 224 PDPRIKARWQSINILPMEAYDELAETGTYNYFLLCPVLNPPLDVSLKEELANALVRVLISTGR-AKQFLMDL--RMKEVL 300 (932)
T ss_pred CCccccccccccccCchHHHHHHHHHhccceeeeecccCCCcchhHHHHHHHHHHHHHHhcch-HHHHhhcc--hhHhhh
Confidence 3455677999999999999998876 5667999999987776664333223345666665432 12344333 344444
Q ss_pred HH-HHHHHhhC
Q psy12508 83 PE-MIQHFAEN 92 (113)
Q Consensus 83 ~~-lv~~y~~~ 92 (113)
.. -++||...
T Consensus 301 r~~~idhlifr 311 (932)
T KOG3508|consen 301 RLGDIDHLIFR 311 (932)
T ss_pred hccchhhhhhh
Confidence 44 45555443
No 41
>cd00214 Calpain_III Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.
Probab=41.73 E-value=46 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=14.1
Q ss_pred CCceEEEEecCCC---CCcEEEEEEeC
Q psy12508 30 NEGSYLVRNSESN---RPDYSLSLKSA 53 (113)
Q Consensus 30 ~~G~FLvR~s~~~---~~~~~Lsv~~~ 53 (113)
++|.|+|-+|.-. .|.|.|.|.+.
T Consensus 116 ~pG~YvIIPsT~~p~~~g~F~LrVfs~ 142 (150)
T cd00214 116 PPGEYVIVPSTFEPGEEGEFLLRVFSE 142 (150)
T ss_pred CCCCEEEEeeecCCCCcccEEEEEEec
Confidence 5567777766533 34566666543
No 42
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=40.89 E-value=42 Score=18.38 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=18.9
Q ss_pred cCCHHHHHHHhcCCCCceEEEEecCC
Q psy12508 16 SVTRHEAENILRNSNEGSYLVRNSES 41 (113)
Q Consensus 16 ~i~r~~ae~lL~~~~~G~FLvR~s~~ 41 (113)
.++-.+++..|. .+|-|++|..-+
T Consensus 6 ~~~~ke~ik~Le--~~Gf~~vrqkGS 29 (66)
T COG1724 6 RMKAKEVIKALE--KDGFQLVRQKGS 29 (66)
T ss_pred cCCHHHHHHHHH--hCCcEEEEeecc
Confidence 456778888888 899999997643
No 43
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=40.51 E-value=55 Score=17.29 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=20.7
Q ss_pred cEEECcCCCCCCCHHHHHHHHhhCC
Q psy12508 69 KFILGQFSAPFDSVPEMIQHFAENR 93 (113)
Q Consensus 69 ~~~~~~~~~~F~sl~~lv~~y~~~~ 93 (113)
.|++...++.|.|..|+..|+..++
T Consensus 27 v~Y~sP~Gk~~Rs~~ev~~yL~~~~ 51 (62)
T cd00122 27 VYYYSPCGKKLRSKPEVARYLEKTG 51 (62)
T ss_pred EEEECCCCceecCHHHHHHHHHhCC
Confidence 4666666789999999999998874
No 44
>smart00720 calpain_III calpain_III.
Probab=40.51 E-value=54 Score=20.20 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=11.7
Q ss_pred CCceEEEEecCCC---CCcEEEEEEe
Q psy12508 30 NEGSYLVRNSESN---RPDYSLSLKS 52 (113)
Q Consensus 30 ~~G~FLvR~s~~~---~~~~~Lsv~~ 52 (113)
++|.|+|-++... .|.|.|.|..
T Consensus 111 ~~G~Y~iVPsT~~p~~~g~F~LrV~s 136 (143)
T smart00720 111 PPGEYVIVPSTFEPNQEGDFLLRVFS 136 (143)
T ss_pred CCCCEEEEEeecCCCCccCEEEEEEe
Confidence 4455666655433 2345555544
No 45
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=38.40 E-value=19 Score=21.69 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=16.1
Q ss_pred CCceeecCCHHHHHHHhcC
Q psy12508 10 RNWYHGSVTRHEAENILRN 28 (113)
Q Consensus 10 ~~w~~g~i~r~~ae~lL~~ 28 (113)
+.|..|.|+-+||.++|+.
T Consensus 68 yAWLeg~it~eEaveil~~ 86 (120)
T PF11469_consen 68 YAWLEGKITIEEAVEILKA 86 (120)
T ss_dssp HHHHTTSS-HHHHHHHHHC
T ss_pred HHHHhccccHHHHHHHHHh
Confidence 4699999999999999985
No 46
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=36.78 E-value=48 Score=18.59 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.0
Q ss_pred cEEECcCCCCCCCHHHHHHHHhhCC
Q psy12508 69 KFILGQFSAPFDSVPEMIQHFAENR 93 (113)
Q Consensus 69 ~~~~~~~~~~F~sl~~lv~~y~~~~ 93 (113)
.|++...+..|.|..|+..|+..++
T Consensus 28 vyY~sP~Gkk~RS~~ev~~yL~~~~ 52 (77)
T cd01396 28 VYYISPTGKKFRSKVELARYLEKNG 52 (77)
T ss_pred EEEECCCCCEEECHHHHHHHHHhCC
Confidence 5677766789999999999999874
No 47
>PF07935 SSV1_ORF_D-335: ORF D-335-like protein; InterPro: IPR012922 The sequences featured in this family are similar to a probable integrase (P20214 from SWISSPROT) expressed by the SSV1 virus of the archaeon Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination [].
Probab=34.16 E-value=76 Score=17.68 Aligned_cols=45 Identities=16% Similarity=0.382 Sum_probs=26.2
Q ss_pred CceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHHhhCC
Q psy12508 31 EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENR 93 (113)
Q Consensus 31 ~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y~~~~ 93 (113)
-|+|+||+-..+ | .-|.|.... +|.-. ...-.+|.++|+.|.+..
T Consensus 5 ~gd~~irE~KGk---Y----------YVY~iE~~~-~G~~r----e~YVGpL~~VVe~Yik~K 49 (72)
T PF07935_consen 5 FGDIIIRERKGK---Y----------YVYKIEKDI-NGERR----ETYVGPLDDVVETYIKLK 49 (72)
T ss_pred cCcEEEEEeCCe---E----------EEEEEEecc-CCcee----eeeeccHHHHHHHHHhcc
Confidence 477888876443 2 224455432 23211 134567999999998763
No 48
>KOG2293|consensus
Probab=33.78 E-value=38 Score=26.19 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=42.4
Q ss_pred ecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHHhhCC
Q psy12508 15 GSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENR 93 (113)
Q Consensus 15 g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y~~~~ 93 (113)
-.|+|.+|.=.|+ .+|+|-|-. .|.|.|.|.- +.+-|-.+.....+....+.+-...|..=.++|.-|.+..
T Consensus 472 tKISRRQa~IkL~--n~GsF~IkN----lGK~~I~vng-~~l~~gq~~~L~~nclveIrg~~FiF~~N~~~v~~~l~~~ 543 (547)
T KOG2293|consen 472 TKISRRQALIKLK--NDGSFFIKN----LGKRSILVNG-GELDRGQKVILKNNCLVEIRGLRFIFEINQEAVGQYLKEN 543 (547)
T ss_pred ceeeccceeEEec--cCCcEEecc----CcceeEEeCC-ccccCCceEEeccCcEEEEccceEEEeecHHHHHHHHHhc
Confidence 3788888876666 899999954 3778777753 2222222222111233444443345666678888887654
No 49
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=32.92 E-value=75 Score=17.10 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=17.6
Q ss_pred CCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508 29 SNEGSYLVRNSESNRPDYSLSLKSARG 55 (113)
Q Consensus 29 ~~~G~FLvR~s~~~~~~~~Lsv~~~~~ 55 (113)
..+|.|.++.-+. |.|.|.+...+-
T Consensus 35 d~~G~f~~~~l~~--g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 35 DSDGRFSFEGLPP--GTYTLRVSAPGY 59 (82)
T ss_dssp -TTSEEEEEEE-S--EEEEEEEEBTTE
T ss_pred CCCceEEEEccCC--EeEEEEEEECCc
Confidence 3789999986554 678888876553
No 50
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=32.37 E-value=59 Score=18.01 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=21.9
Q ss_pred CCCCCCceee-cCCHHHHHHHhcCCCCce
Q psy12508 6 PLDQRNWYHG-SVTRHEAENILRNSNEGS 33 (113)
Q Consensus 6 ~l~~~~w~~g-~i~r~~ae~lL~~~~~G~ 33 (113)
.+...||.+. ..+-++++.+...++.|+
T Consensus 40 ~~~rkPWI~Pd~~~ve~i~~vi~sCPSGA 68 (74)
T COG3592 40 NLGRKPWIMPDAVDVEEIVKVIDTCPSGA 68 (74)
T ss_pred ccCCCCccCCCCCCHHHHHHHHHhCCchh
Confidence 4667899987 457888888888888885
No 51
>smart00604 MD MD domain.
Probab=30.21 E-value=1.5e+02 Score=18.94 Aligned_cols=26 Identities=12% Similarity=0.301 Sum_probs=19.7
Q ss_pred CCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508 30 NEGSYLVRNSESNRPDYSLSLKSARG 55 (113)
Q Consensus 30 ~~G~FLvR~s~~~~~~~~Lsv~~~~~ 55 (113)
+.|.|.|.......+...|+|+.+..
T Consensus 5 ~~G~w~l~v~s~~s~~C~l~vR~qS~ 30 (145)
T smart00604 5 PPGTWTITVRANGSNSCTISVRSQSS 30 (145)
T ss_pred CCceEEEEEecCCCCCEEEEEEeccc
Confidence 67999999877654568899987644
No 52
>PF06194 Phage_Orf51: Phage Conserved Open Reading Frame 51; InterPro: IPR009338 This entry is represented by the Staphylococcus phage PVL (bacteriophage phi-PVL), Orf51. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.78 E-value=1.1e+02 Score=17.22 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=28.5
Q ss_pred eCCeeEEEEEEecCCCCcEEECc--------CCCCCCCHHHHHHHHhhCCcccCC
Q psy12508 52 SARGFMHMKIQRDPDTGKFILGQ--------FSAPFDSVPEMIQHFAENRLPILG 98 (113)
Q Consensus 52 ~~~~v~h~~I~~~~~~~~~~~~~--------~~~~F~sl~~lv~~y~~~~~~~~~ 98 (113)
.+.+|-|+.|.- |.|.+-+ ....|++-.|+-.|-.++.+....
T Consensus 23 d~~kVAH~HvVN----~~Yy~HGH~kt~~~gvKktFn~~~Ef~~Yi~~~~L~~ee 73 (80)
T PF06194_consen 23 DNEKVAHIHVVN----GTYYFHGHHKTMWKGVKKTFNNKEEFENYIKQHELYFEE 73 (80)
T ss_pred cCceEEEEEEEc----ceEEEeeeecccccchhhhcCcHHHHHHHHHHcCCceeh
Confidence 345688888752 4444433 236799999998888887775443
No 53
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=29.65 E-value=27 Score=21.66 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=12.8
Q ss_pred ceeecCCHHHHHHHhc
Q psy12508 12 WYHGSVTRHEAENILR 27 (113)
Q Consensus 12 w~~g~i~r~~ae~lL~ 27 (113)
+..|.|++++|.++|.
T Consensus 53 ~~~Gdi~eEEA~~ll~ 68 (127)
T PF14591_consen 53 YKSGDIDEEEALQLLD 68 (127)
T ss_dssp HHTTSS-HHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHH
Confidence 5679999999999885
No 54
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=29.57 E-value=30 Score=20.83 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=8.4
Q ss_pred CCCCCCceeec
Q psy12508 6 PLDQRNWYHGS 16 (113)
Q Consensus 6 ~l~~~~w~~g~ 16 (113)
++.++||||--
T Consensus 55 p~rdqPfYHll 65 (116)
T COG3785 55 PLRDQPFYHLL 65 (116)
T ss_pred ccccCCceeee
Confidence 67788999843
No 55
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=29.08 E-value=44 Score=18.55 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=20.2
Q ss_pred cEEECcCCCCCCCHHHHHHHHhhCC
Q psy12508 69 KFILGQFSAPFDSVPEMIQHFAENR 93 (113)
Q Consensus 69 ~~~~~~~~~~F~sl~~lv~~y~~~~ 93 (113)
.|++...+..|.|..|++.|+..+.
T Consensus 33 v~Y~sP~Gk~~RS~~eV~~yL~~~~ 57 (77)
T PF01429_consen 33 VYYYSPCGKRFRSKKEVVRYLKENP 57 (77)
T ss_dssp EEEEETTSEEESSHHHHHHHHTTSS
T ss_pred EEEECCCCCEEeCHHHHHHHHHhCC
Confidence 3555556789999999999998776
No 56
>KOG0518|consensus
Probab=25.03 E-value=4.5e+02 Score=22.66 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCe-----eEEEEEEe
Q psy12508 19 RHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARG-----FMHMKIQR 63 (113)
Q Consensus 19 r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~-----v~h~~I~~ 63 (113)
..+||....+..+|+|-+.......|.|.++++.... ..+.++..
T Consensus 18 g~~ae~~i~~~~~~T~~~t~~~~~aG~~~~slk~~~~dg~~~p~~v~vl~ 67 (1113)
T KOG0518|consen 18 GIVAEVKIQDNLDGTVTVTYDPQRAGFYILSLKYDGSDGVNLPSLVQVLS 67 (1113)
T ss_pred CcceeeEEEecCCceEEEEEccccCcceeEEEEecCccccccceeeEEee
Confidence 6778888888899999999999989999999997543 44455543
No 57
>PF09625 VP9: VP9 protein; InterPro: IPR018587 VP9 is a protein containing a ferredoxin fold. Two dimers come together to form one asymmetric unit which possesses a DNA recognition fold and specific metal binding sites possibly for zinc. It is postulated that being a non-structural protein VP9 is involved in the transcriptional regulation of the White spot syndrome virus (WSSV), from which it comes. WSSV is the major viral pathogen in shrimp aquaculture []. VP9 is found N-terminal to the IPR009766 from INTERPRO. ; PDB: 2ZUG_A 2GJ2_A 2GJI_A.
Probab=23.25 E-value=1.1e+02 Score=17.30 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=10.7
Q ss_pred EEEecCCCCCcEEEEEEe
Q psy12508 35 LVRNSESNRPDYSLSLKS 52 (113)
Q Consensus 35 LvR~s~~~~~~~~Lsv~~ 52 (113)
-||.|+-..+.|+++++.
T Consensus 29 siRkSEl~d~~~iV~Lk~ 46 (79)
T PF09625_consen 29 SIRKSELRDGVYIVQLKK 46 (79)
T ss_dssp EEEE-SS-TTEEEEEE-T
T ss_pred HHHHhhcccceEEEEEec
Confidence 578888777777776654
No 58
>PF15517 TBPIP_N: TBP-interacting protein N-terminus; PDB: 2CZR_A.
Probab=21.91 E-value=1.6e+02 Score=17.33 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=9.7
Q ss_pred CCHHHHHHHhcCCCCce
Q psy12508 17 VTRHEAENILRNSNEGS 33 (113)
Q Consensus 17 i~r~~ae~lL~~~~~G~ 33 (113)
-+|++|+.|-.....|-
T Consensus 47 ~skE~AdKla~k~~~gi 63 (99)
T PF15517_consen 47 ESKEEADKLAEKEEVGI 63 (99)
T ss_dssp SSHHHHHHHSS---SSE
T ss_pred CCHHHHHHhhhccCCCe
Confidence 36888988766434443
No 59
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=21.73 E-value=1.6e+02 Score=16.38 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=21.6
Q ss_pred cEEECcCCCCCCCHHHHHHHHhhCCc
Q psy12508 69 KFILGQFSAPFDSVPEMIQHFAENRL 94 (113)
Q Consensus 69 ~~~~~~~~~~F~sl~~lv~~y~~~~~ 94 (113)
.|++...++.|.|..|+..|...++.
T Consensus 30 V~Y~sP~GkklRs~~ev~~YL~~~~~ 55 (77)
T smart00391 30 VYYISPCGKKLRSKSELARYLHKNGD 55 (77)
T ss_pred EEEECCCCCeeeCHHHHHHHHHhCCC
Confidence 56777667899999999999988764
No 60
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=21.70 E-value=54 Score=23.70 Aligned_cols=19 Identities=32% Similarity=0.657 Sum_probs=15.0
Q ss_pred eecCCHHHHHHHhcCCCCce
Q psy12508 14 HGSVTRHEAENILRNSNEGS 33 (113)
Q Consensus 14 ~g~i~r~~ae~lL~~~~~G~ 33 (113)
.|.|||+||.++++. -+|.
T Consensus 300 ~G~itReeal~~v~~-~d~~ 318 (343)
T TIGR03573 300 SGRITREEAIELVKE-YDGE 318 (343)
T ss_pred cCCCCHHHHHHHHHH-hccc
Confidence 589999999999975 3443
No 61
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=21.47 E-value=85 Score=13.02 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=13.3
Q ss_pred CCCCCCHHHHHHHHhhC
Q psy12508 76 SAPFDSVPEMIQHFAEN 92 (113)
Q Consensus 76 ~~~F~sl~~lv~~y~~~ 92 (113)
+..|.++.+|+.|-+.+
T Consensus 8 ~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 8 GKTFSSLSALREHKRSH 24 (27)
T ss_dssp TEEESSHHHHHHHHCTT
T ss_pred CCccCChhHHHHHhHHh
Confidence 36899999999986543
No 62
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=21.15 E-value=54 Score=16.07 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=10.2
Q ss_pred CCCCCCCceeecCC
Q psy12508 5 KPLDQRNWYHGSVT 18 (113)
Q Consensus 5 ~~l~~~~w~~g~i~ 18 (113)
+..+++-||.|...
T Consensus 11 ~~~sdqIWFYG~~~ 24 (40)
T PF13106_consen 11 ECKSDQIWFYGFFG 24 (40)
T ss_pred ccccccEEEeeHHH
Confidence 46678899998643
No 63
>KOG4680|consensus
Probab=21.10 E-value=1.3e+02 Score=19.26 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=18.0
Q ss_pred CCceEEEEecCC-----CCCcEEEEEEe
Q psy12508 30 NEGSYLVRNSES-----NRPDYSLSLKS 52 (113)
Q Consensus 30 ~~G~FLvR~s~~-----~~~~~~Lsv~~ 52 (113)
++|+|++-.+.. .||.|+|-++.
T Consensus 100 epG~f~~~hsq~LPg~tPPG~Y~lkm~~ 127 (153)
T KOG4680|consen 100 EPGDFLVAHSQVLPGYTPPGSYVLKMTA 127 (153)
T ss_pred CcCceeeeeeEeccCcCCCceEEEEEEe
Confidence 779999997753 46789888774
No 64
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=20.92 E-value=2.1e+02 Score=17.24 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=27.1
Q ss_pred CCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHHhhCC
Q psy12508 53 ARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENR 93 (113)
Q Consensus 53 ~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y~~~~ 93 (113)
...+.|++|.++...+.|.+- -.|.+-.+=-+||..-.
T Consensus 38 ~~~i~~~riird~~pnrymVL---ikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 38 REDIEHIRIIRDGTPNRYMVL---IKFRDQESADEFYEEFN 75 (110)
T ss_pred cccEEEEEEeeCCCCceEEEE---EEECCHHHHHHHHHHhC
Confidence 346889999988755778775 47887777667776533
No 65
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=20.52 E-value=87 Score=18.07 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=13.9
Q ss_pred CCCCCHHHHHHHHhhCCc
Q psy12508 77 APFDSVPEMIQHFAENRL 94 (113)
Q Consensus 77 ~~F~sl~~lv~~y~~~~~ 94 (113)
..-.++++||.+|.+.+-
T Consensus 7 tK~rni~eLi~fY~ky~~ 24 (85)
T PF07240_consen 7 TKIRNIQELIAFYEKYSP 24 (85)
T ss_pred HHHhhHHHHHHHHHHcCc
Confidence 345789999999987653
No 66
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=20.01 E-value=2.1e+02 Score=16.97 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=13.7
Q ss_pred eEEEEecCCCCCcEEEEEEeCCe
Q psy12508 33 SYLVRNSESNRPDYSLSLKSARG 55 (113)
Q Consensus 33 ~FLvR~s~~~~~~~~Lsv~~~~~ 55 (113)
..|+|-...+.|.|++.+...+.
T Consensus 67 L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 67 LHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred EEEeecChhhCcEEEEEEECCCC
Confidence 34666666666667666665443
Done!