RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12508
(113 letters)
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 116 bits (292), Expect = 3e-35
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP-DYSLSLKSARGFMHM 59
M N L WY G ++R E LR++ +G++LVR++ + DY+L+L+ +
Sbjct: 2 MNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 61
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHP 107
KI GK+ F SV E+I H+ L + + LL+P
Sbjct: 62 KIFH--RDGKYGFSD-PLTFSSVVELINHYRNESLAQYNPKLDVKLLYP 107
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 113 bits (286), Expect = 2e-34
Identities = 25/111 (22%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILR---NSNEGSYLVRNSESNRPDYSLSLKSARGFMH 58
+ +PL W+HG ++R +A ++ + G +LVR SE+ R + L+ H
Sbjct: 1 GSDQPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKH 60
Query: 59 MKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPIL--GAEHMCLLHP 107
+++ + G+ + F S+ +M++HF + +P+ G+ + L+
Sbjct: 61 LRLSLNAA-GQCRVQH--LHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSY 108
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 113 bits (284), Expect = 7e-34
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
K L ++ WY G +TR EAE L N +GS+LVR+S +R SLS +S +H +I
Sbjct: 16 EELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRI 75
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAEN-----------RLPILGAEHMCLLHP 107
+ F S+ ++I+H + RLP + L +P
Sbjct: 76 EHSNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVRLTNP 132
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 112 bits (282), Expect = 1e-33
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
L++ +WYHG V+R AE +L + GS+LVR SES+ S+SL+ H +I
Sbjct: 12 SLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTA 71
Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
D GK + + F ++ E++ H + L +P
Sbjct: 72 D-GKVYVTA-ESRFSTLAELVHHHSTVA----DGLVTTLHYP 107
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 111 bits (280), Expect = 2e-33
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
++ KPL +++WYHG++ R EA+ +L+ +G +LVR S +Y LS+ S H I
Sbjct: 9 SHMKPLAEQDWYHGAIPRIEAQELLKK--QGDFLVRESHGKPGEYVLSVYSDGQRRHFII 66
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
Q + F ++P++I H + I + LL+P
Sbjct: 67 QYVD--NMYRFEG--TGFSNIPQLIDHHYTTKQVITKKSGVVLLNP 108
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 111 bits (279), Expect = 3e-33
Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 9/114 (7%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHM 59
+ NP P + + WY+ ++R EAE++L +G++L+R E Y+++ ++ H
Sbjct: 10 VPNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREG-TDSYAITFRARGKVKHC 68
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
+I RD F+LG SA F+S+ E++ ++ ++ L M L +P+ +LL
Sbjct: 69 RINRDG--RHFVLGT-SAYFESLVELVSYYEKHAL----YRKMRLRYPVTPELL 115
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 109 bits (274), Expect = 1e-32
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
A D+ WY G V+R EA+ L+ G +LVR+S + DY LS+ H I
Sbjct: 11 ARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYII 70
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
P+ +F +G FD +P +++ + + L L+ P
Sbjct: 71 NSLPN-RRFKIGDQE--FDHLPALLEFYKIHYLDT-----TTLIEP 108
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 109 bits (275), Expect = 1e-32
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 3 NPKPLDQRNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
P + + W+HG +++ EA N+L + S+LVR S++ DYSL ++ KI
Sbjct: 9 EEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKI 68
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
P+ +F++G ++S+ ++I H+ + ++ E L P+ Q
Sbjct: 69 CPTPN-NQFMMGG--RYYNSIGDIIDHYRKEQI----VEGYYLKEPVPMQ 111
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 108 bits (272), Expect = 2e-32
Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 8/103 (7%)
Query: 6 PLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
PL WY+G+VTRH+AE L EG +L+R+SES+ D+S+SLK++ H K+Q
Sbjct: 2 PLGSE-WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQL- 59
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
+ +GQ F ++ E+++H+ + PI +EH L+
Sbjct: 60 -VDNVYCIGQ--RRFHTMDELVEHYKKA--PIFTSEHGEKLYL 97
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 108 bits (272), Expect = 2e-32
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
+ R W+H ++T EAEN+L +GS+L R S+SN D++LS++ H+KIQ
Sbjct: 4 MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTG 63
Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAENR--LPILGAEHMCLLHP 107
D + G F ++ E++Q++ E+ L + + L +P
Sbjct: 64 D-YYDLYGG--EKFATLAELVQYYMEHHGQLKEKNGDVIELKYP 104
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 108 bits (272), Expect = 3e-32
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
L++ +WYHG V+R+ AE +L + GS+LVR SES+ S+SL+ H +I D
Sbjct: 2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 67 TGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
GK + + F+++ E++ H + L +P
Sbjct: 62 -GKLYVSS-ESRFNTLAELVHHHSTVA----DGLITTLHYP 96
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 107 bits (269), Expect = 6e-32
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
L W+HG ++R EAE +L+ G +LVR S + Y L+ + H+ +
Sbjct: 3 QLRGEPWFHGKLSRREAEALLQL--NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVD-- 58
Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPIL-GAEHMCLLHPMIEQL 112
G F+SV +I + +N LPI+ +CL P+ +L
Sbjct: 59 PEGVVRTKDHR--FESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 107 bits (268), Expect = 1e-31
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
W+HG+++R +AEN+L + GS+L+R S S+ Y+LS K+ H +
Sbjct: 8 GQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSH-VGYTLSYKAQSSCCHFMV 66
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
+ D G F++ S+ ++ + PI + L P ++
Sbjct: 67 KLLDD-GTFMIPGEKVAHTSLDALVTFHQQK--PIEPRREL-LTQPCRQK 112
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 107 bits (268), Expect = 1e-31
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
KPL ++ WYHG++ R E +L + G +LVR S+ + +Y LS+ H IQ
Sbjct: 10 QKPLHEQLWYHGAIPRAEVAELLVH--SGDFLVRESQG-KQEYVLSVLWDGLPRHFIIQS 66
Query: 64 DPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
+ L F S+P +I H + P+ + L
Sbjct: 67 L--DNLYRLEGEG--FPSIPLLIDHLLSTQQPLTKKSGVVLHRA 106
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 108 bits (271), Expect = 1e-31
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 16/117 (13%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
+ L Q WY GS+T +EA+ L+ + EG++L+R+S + ++S+K++ G +++I+
Sbjct: 12 RELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQ 71
Query: 65 PDTGKFILGQFSA------PFDSVPEMIQHFAEN--------RLPILGAEHMCLLHP 107
GKF L FDSV +I ++ + P G H+ L P
Sbjct: 72 D--GKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKP 126
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 106 bits (267), Expect = 2e-31
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 6 PLDQRNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
+ W+ G + R +AE +L G++L+R SES D+SLS+K H K+ RD
Sbjct: 2 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD 61
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
GK+ L F+S+ E++ + + + +
Sbjct: 62 GA-GKYFLWV--VKFNSLNELVDYHRSTSVSRNQQIFLRDIEQ 101
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 105 bits (265), Expect = 3e-31
Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
+ W+ G++ R + +N+L++ G+YL+R + +++S+K H+K+
Sbjct: 8 SREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKV 67
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHP 107
D I + FDS+ E+++++ + L + L +P
Sbjct: 68 VEK-DNWIHITE--AKKFDSLLELVEYYQCHSLKESFKQLDTTLKYP 111
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide
binding protein; HET: PTR; 1.80A {Mus musculus} SCOP:
d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 104 bits (263), Expect = 4e-31
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
+ ++ W+H ++RH+AEN+L + G +++R S+S+ D+S+S++ H K+
Sbjct: 1 GSFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKV 60
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCL 104
RD G + L F S+ +++ ++ I + + L
Sbjct: 61 MRDTK-GNYFLWTEK--FPSLNKLVDYYRTT--SISKQKQVFL 98
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 102 bits (256), Expect = 4e-30
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 12 WYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+ G + R +AE +L G++L+R SES D+SLS+K H K+ RD GK+
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA-GKY 63
Query: 71 ILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCL 104
L F+S+ E++ + + + + L
Sbjct: 64 FLWV--VKFNSLNELVDYHRST--SVSRNQQIFL 93
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 106 bits (266), Expect = 4e-29
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP-DYSLSLKSARGFMHM 59
M N L WY G ++R E LR++ +G++LVR++ + DY+L+L+ +
Sbjct: 1 MNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 60
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEH-MCLLHP 107
KI GK+ F SV E+I H+ L + + LL+P
Sbjct: 61 KIFHRD--GKYGFSD-PLTFSSVVELINHYRNESLAQYNPKLDVKLLYP 106
Score = 72.9 bits (178), Expect = 1e-16
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMK 60
+ D++ W GS R++AEN+LR +G++LVR S S + Y+ S+ H
Sbjct: 292 DEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCV 350
Query: 61 IQRDPDTGKFILGQFSAPFDSVPEM 85
I + F + + S+ E+
Sbjct: 351 INKTATGYGFA--EPYNLYSSLKEL 373
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 100 bits (250), Expect = 1e-28
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPD--YSLSLKSARGFMH 58
L + WY G+ R AE L SN +GS+L+R S + Y+L + +
Sbjct: 15 DQEAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYN 74
Query: 59 MKIQRDPDTGKFILGQFSAP---FDSVPEMIQHFAENRLPILGAEH-----MCLLHP 107
+ ++ T ++ LG+ F SV E++ N L ++ +++ L +
Sbjct: 75 IPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYA 131
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 100 bits (249), Expect = 2e-28
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 3 NPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQ 62
+ L + +Y +VT EA +L G++L+R+S R ++LS+K+ G +++IQ
Sbjct: 16 AVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQ 75
Query: 63 RDPDTGKF----ILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
+ + Q FD V +++ H+ P + + P
Sbjct: 76 CEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPP--PGTPSFSLPPTEP 122
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 99.0 bits (247), Expect = 3e-28
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
P+ L WY G + R AE+IL N ++G++LVR + ++++S+K H+KI
Sbjct: 18 GPPQDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKI 77
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHP 107
G + + + F + E+++ + +N L L P
Sbjct: 78 MTAE--GLYRITE-KKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFP 121
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 98.8 bits (246), Expect = 1e-27
Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMK 60
+ + ++ Y G + ++ AE +L EG++L+R+S +S+S + +H +
Sbjct: 25 VPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHAR 84
Query: 61 IQRDPDTGKFILGQFSA---PFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
I++ F + +++H+ + L P
Sbjct: 85 IEQWN--HNFSFDAHDPCVFHSPDITGLLEHYKDP--SACMFFEPLLSTP 130
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 97.7 bits (243), Expect = 1e-27
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
+ L + +Y +VT EA +L G++L+R+S R ++LS+K+ G +++I
Sbjct: 26 NAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRI 85
Query: 62 QRDPDTGKFILG------QFSAPFDSVPEMIQHFAENRL-PILGAEHMCLLHPMIEQL 112
Q + G F L Q FD V +++ H+ + P + ++ E++
Sbjct: 86 QXEG--GSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQALPGSTPKRAYYIYSGGEKI 141
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 94.7 bits (236), Expect = 7e-27
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 3 NPKP-LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
+P P D++ W GS R++AEN+LR +G++LVR S S + Y+ S+ H I
Sbjct: 2 SPIPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVI 60
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHPMIEQ 111
+ F + S+ E++ H+ L ++ L +P+ Q
Sbjct: 61 NKTATGYGFAEP--YNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQ 109
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 95.0 bits (237), Expect = 7e-27
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHM 59
A + L W+ G++ R +AE L S G++L+R SES + D+SLS+ H
Sbjct: 8 AEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHY 67
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
+I+R D G F L + F ++ E + ++ + + L P
Sbjct: 68 RIRRL-DEGGFFLTR-RKVFSTLNEFVNYYTTTSDGL----CVKLEKP 109
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 94.3 bits (235), Expect = 8e-27
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
+D YHG ++R E +L + +GSYL+R+SES Y L + ++ +
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60
Query: 66 DTGKFILGQFSAP---FDSVPEMIQHFAENRLPILGAEHMCLLHP 107
F + +I F + I+ + L +P
Sbjct: 61 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIV----IPLQYP 101
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 93.4 bits (232), Expect = 2e-26
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 19/111 (17%)
Query: 11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
+WY G ++R EA +L+ G +LVR+S ++ DY LS+ H I
Sbjct: 1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPV 60
Query: 71 ILGQFSAP--------------FDSVPEMIQHFAENRLPILGAEHMCLLHP 107
P FDS+P +++ + + L L+ P
Sbjct: 61 PPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT-----TTLIEP 106
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 93.0 bits (232), Expect = 2e-26
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
L W+HG ++ EA L+ +G +LVR S + DY L + R +H ++ D
Sbjct: 2 LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHR-D 60
Query: 67 TGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
I + F ++ +M++H+++++ I L+ P
Sbjct: 61 GHLTIDE--AVFFCNLMDMVEHYSKDKGAI----CTKLVRP 95
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 93.6 bits (233), Expect = 3e-26
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
+D YHG ++R E +L + +GSYL+R+SES Y L + ++ +
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60
Query: 66 DTGKFILGQFSAP---FDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
F + +I F + I+ + L +P+ ++
Sbjct: 61 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIV----IPLQYPVEKK 105
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 92.2 bits (230), Expect = 4e-26
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
W+ G ++R EA L+ G++L+R SE DY LS++ + H KI R G+
Sbjct: 4 WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG-GR 62
Query: 70 FILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
L + + F S+PE++ + L + + L P
Sbjct: 63 LHLNE-AVSFLSLPELVNYHRAQSL----SHGLRLAAP 95
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 90.8 bits (226), Expect = 2e-25
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFM--- 57
+ LD +W+ G+++R ++E +LR EG+++VRNS Y++SL S
Sbjct: 3 SGSSGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVG-MYTVSLFSKAVNDKKG 61
Query: 58 ---HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
H + + + K L + + FDS+P++I + N ++ L HP
Sbjct: 62 TVKHYHVHTNAE-NKLYLAE-NYCFDSIPKLIHYHQHNSAGMI----TRLRHP 108
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 89.6 bits (223), Expect = 6e-25
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
W+HG +TR +AE +L G +LVR S + DY+L + S H +I K
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHA--SKLS 67
Query: 72 LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
+ + F+++ ++++H+ + + L+ P + +
Sbjct: 68 IDE-EVYFENLMQLVEHYTSDADGLC----TRLIKPKVME 102
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 90.0 bits (224), Expect = 7e-25
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 12 WYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W HG++TR +AE +L + +GS+LVR SES Y+L + +I + D
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFT 71
Query: 71 ILGQFSAP---FDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
+ F + ++I+ + + + ++ L +P+ +
Sbjct: 72 VQASEGVSMRFFTKLDQLIEFYKKENMGLV----THLQYPVPLE 111
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 90.0 bits (224), Expect = 7e-25
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 3 NPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSA------RG 55
L+ WYH ++TR++AE++LR + EG+++VR+S Y++S+
Sbjct: 9 KITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRH-LGSYTISVFMGARRSTEAA 67
Query: 56 FMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
H +I+++ G++ + + F S+PE+I + N ++ L +P
Sbjct: 68 IKHYQIKKNDS-GQWYVAE-RHAFQSIPELIWYHQHNAAGLM----TRLRYP 113
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 88.9 bits (221), Expect = 1e-24
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG- 68
W+HG ++R E+ I++ +G +L+R+S+SN + L+L + + +I D G
Sbjct: 7 WFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQ 66
Query: 69 -KFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
F L + F + +++ + N+ + L H
Sbjct: 67 TFFSLDDGNTKFSDLIQLVDFYQLNKGVLP----CKLKHH 102
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine
signal transduction lymphocyte, signaling protein; HET:
PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 88.1 bits (219), Expect = 2e-24
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 12 WYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
+YHG +T+ E E +L +G++L+R+SES L + + +I R+
Sbjct: 5 YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64
Query: 71 ILGQFSAP---FDSVPEMIQHFAEN 92
I P F ++ E++ + +
Sbjct: 65 IETDAHTPRTIFPNLQELVSKYGKP 89
>1blj_A P55 BLK protein tyrosine kinase; signal transduction,
transferase, phosphotransferase, phosphorylation; NMR
{Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 88.2 bits (219), Expect = 2e-24
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSA----RG 55
A + L+ W+ +++R +AE L GS+L+R SESN+ +SLS+K
Sbjct: 4 APVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEV 63
Query: 56 FMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
H KI+ + G + + F ++ ++QH+++
Sbjct: 64 VKHYKIRSLDN-GGYYISP-RITFPTLQALVQHYSKK 98
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 92.0 bits (228), Expect = 5e-24
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
++R WY G + R +AE +L +G++L+R S S R Y+ S+ H I
Sbjct: 186 DALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVI 244
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMC-LLHP 107
R TG ++ + S+ E++ H+ L L HP
Sbjct: 245 YRT-ATGFGFAEPYN-LYGSLKELVLHYQHASLVQHNDALTVTLAHP 289
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 91.1 bits (226), Expect = 6e-24
Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 6 PLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
P +++GS++R EAE L+ + +G +L+R + Y LSL F H I+R
Sbjct: 2 PAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIER 61
Query: 64 DPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
+ G + + E+ + ++ + + P +
Sbjct: 62 QLN-GTYAIAG-GKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLE 107
Score = 83.4 bits (206), Expect = 4e-21
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 12 WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
WYH S+TR EAE L + +G +L+R + Y+LSL + H I +D GK
Sbjct: 161 WYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQG-TYALSLIYGKTVYHYLISQDKA-GK 218
Query: 70 FILGQFSAPFDSVPEMIQHFAENR 93
+ + + FD++ +++++
Sbjct: 219 YCIPE-GTKFDTLWQLVEYLKLKA 241
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide);
HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB:
1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A*
1cwd_L* 1cwe_A*
Length = 105
Score = 84.3 bits (209), Expect = 8e-23
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARG-----FMHM 59
L+ W+ +++R +AE L GS+L+R SES +SLS++ H
Sbjct: 1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
KI+ + G +I + F + E+++H+
Sbjct: 61 KIRNLDNGGFYISPR--ITFPGLHELVRHYTNA 91
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 83.5 bits (207), Expect = 1e-22
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 7 LDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGF-----MHM 59
+ WY G + R +AE L + G++L+R SE+ + YSLS++ H
Sbjct: 2 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 61
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
KI++ + G +I + A F+++ +++QH++E + L+ P
Sbjct: 62 KIRKLDNGGYYITTR--AQFETLQQLVQHYSERAAGLS----SRLVVP 103
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 83.5 bits (207), Expect = 2e-22
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 12 WYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
W+HG ++R E++ ++ + +G +LVR S+ N + LSL + H I + G+
Sbjct: 16 WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 75
Query: 70 --FILGQFSAPFDSVPEMIQHFAENR--LPILGAEHMCLLHP 107
F + F + ++++ NR LP L H
Sbjct: 76 LYFSMDDGQTRFTDLLQLVEFHQLNRGILPC------LLRHC 111
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 83.5 bits (207), Expect = 2e-22
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 4 PKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFM----- 57
++ WY +TR +AE +L+ EG ++VR+S S Y++S+ +
Sbjct: 5 EDSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVI 63
Query: 58 -HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
H + P ++ L + F ++PE+I + N ++ L +P
Sbjct: 64 RHYVVCSTPQ-SQYYLAE-KHLFSTIPELINYHQHNSAGLI----SRLKYP 108
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 82.4 bits (204), Expect = 8e-22
Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHM 59
+ + W+H ++R EA+ ++ + +G +LVR+S+SN + LS+ + H
Sbjct: 18 GSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHF 77
Query: 60 KIQRDPDTGKFILGQFS--APFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
+I D G+ F + ++++ + N+ + L H
Sbjct: 78 QIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNKGVLP----CKLKHY 123
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 80.3 bits (198), Expect = 6e-21
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 2 ANPKPLDQRNWYHGSV-TRHEAENILR------NSNEGSYLVRNSESNRPDYSLSLKSAR 54
+ W+H V +R AE +L+ + +G++LVR SE+ DY+LS +
Sbjct: 14 PPTELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSG 73
Query: 55 GFMHMKIQRDPDTG--KFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
H +I+ + G K+ L + F+S+ +IQH+ E L E + L P
Sbjct: 74 RVQHCRIRSTMENGVMKYYLTD-NLTFNSIYALIQHYREAHLRCAEFE-LRLTDP 126
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 78.6 bits (194), Expect = 2e-20
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFM--- 57
+P L+ WY+ S++R +AE +L ++ EG+++VR+S + Y++S+ +
Sbjct: 1 GSPNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPG-TYTVSVFTKAIISENP 59
Query: 58 ---HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
H I+ D+ K FDS+P +IQ+ N ++ L +P+
Sbjct: 60 CIKHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLV----TRLRYPVCGS 112
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 83.1 bits (205), Expect = 4e-20
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 4 PKPLDQRNWYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
P P +++GS++R EAE L+ + +G +L+R + Y LSL F H I
Sbjct: 2 PDPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPI 61
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
+R + I G E+ + ++ +
Sbjct: 62 ERQLNGTYAIAG--GKAHCGPAELCEFYSRD 90
Score = 66.5 bits (162), Expect = 2e-14
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMH 58
+ ++ WYH S+TR EAE L + +G +L+R + Y+LSL + H
Sbjct: 152 LIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYH 210
Query: 59 MKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
I +D I FD++ +++++
Sbjct: 211 YLISQDKAGKYCI--PEGTKFDTLWQLVEYLKLK 242
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 80.3 bits (198), Expect = 4e-20
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHM 59
+ + + WYH S+TR +AE++L +G++LVR + Y++S ++ H
Sbjct: 113 VPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHC 171
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
++Q+ + +LG + FDS+ ++I ++ ++ L M L +P+ E+ L
Sbjct: 172 RVQQ--EGQTVMLGN--SEFDSLVDLISYYEKHPL----YRKMKLRYPINEEAL 217
Score = 68.8 bits (168), Expect = 1e-15
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 12 WYHGSVT-----RHEAENILR------NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMK 60
W+HG + RH AE +L + +GS+LVR SE+ DY+LS H +
Sbjct: 6 WFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCR 65
Query: 61 IQRDPDTGKFILGQFS-APFDSVPEMIQHFAENRL 94
I D G FDS+ ++I H+ + L
Sbjct: 66 IHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPL 100
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 82.5 bits (204), Expect = 5e-20
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
L++ +WYHG V+R+ AE +L + GS+LVR SES+ S+SL+ H +I
Sbjct: 97 TPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 156
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
D ++ + F+++ E++ H + +
Sbjct: 157 NTASDGKLYV--SSESRFNTLAELVHHHSTVADGL 189
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 78.0 bits (192), Expect = 5e-20
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFM-------------- 57
WY ++R +A +L++ + G++L+R+S S + Y L+LK A
Sbjct: 22 WYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLV 81
Query: 58 -HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRL 94
H I+ P K F S+ ++ + + +
Sbjct: 82 RHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPI 119
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2
domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1
d.93.1.1 PDB: 1csy_A* 1csz_A*
Length = 254
Score = 80.0 bits (197), Expect = 1e-19
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
++ G++TR EAE+ L +G YL+R S + ++LS+ R H I+R+ +
Sbjct: 7 FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTY 66
Query: 70 FILGQFSAPFDSVPEMIQHFAEN 92
I G S ++ + ++
Sbjct: 67 AIAGG--RTHASPADLCHYHSQE 87
Score = 75.7 bits (186), Expect = 3e-18
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 12 WYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
W+HG ++R E+E I+ + G +L+R ++N Y+L L +H +I +D GK
Sbjct: 160 WFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRIDKDKT-GK 217
Query: 70 FILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
+ + FD++ ++++H++ L P
Sbjct: 218 LSIPE-GKKFDTLWQLVEHYSYKA----DGLLRVLTVP 250
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 80.8 bits (200), Expect = 2e-19
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
KPL ++ WYHG++ R E +L + G +LVR S+ + +Y LS+ H IQ
Sbjct: 7 QKPLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQS 63
Query: 64 DPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
+ L F S+P +I H + P+ + L
Sbjct: 64 LD--NLYRLEGEG--FPSIPLLIDHLLSTQQPLTKKSGVVLHRA 103
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 78.9 bits (193), Expect = 5e-19
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMK 60
A D+ WY G V+R EA+ L+ G +LVR+S + DY LS+ H
Sbjct: 3 SARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYI 62
Query: 61 IQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
I P+ I Q FD +P +++ + + L +P
Sbjct: 63 INSLPNRRFKIGDQ---EFDHLPALLEFYKIHYLDTTTLIEPAPRYPS 107
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 77.8 bits (192), Expect = 2e-18
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
L W+HG +TR +AE +L G +LVR S + DY+L + H +I
Sbjct: 74 GTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMY 133
Query: 64 DPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
K + + F+++ ++++H+ + +
Sbjct: 134 HA--SKLSIDE-EVYFENLMQLVEHYTTDADGL 163
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm,
phosphoprotein, SH2 domain, signaling protein; HET:
PTR; 1.90A {Homo sapiens}
Length = 125
Score = 72.5 bits (178), Expect = 5e-18
Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 6 PLDQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARG---FMHMKI 61
L+ +V+R EA +L +N + G+ ++R S+ +YS++++ H K+
Sbjct: 11 VLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPG-SDSRNYSITIRQEIDIPRIKHYKV 69
Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
I + ++ +I +F +
Sbjct: 70 MSV-GQNYTIELEKPVTLPNLFSVIDYFVKE 99
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 74.5 bits (182), Expect = 7e-18
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 14/124 (11%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
N ++ +WY G ++R EA +L+ G +LVR+S ++ DY LS+ H I
Sbjct: 5 GNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 64
Query: 62 QRDPDTGKFILGQFSAP--------------FDSVPEMIQHFAENRLPILGAEHMCLLHP 107
P FDS+P +++ + + L
Sbjct: 65 NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSR 124
Query: 108 MIEQ 111
Sbjct: 125 QGSG 128
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 73.6 bits (181), Expect = 8e-17
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFM- 57
+A L+ W+ ++R +AE L GS+++R+SE+ + YSLS++
Sbjct: 61 VARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQG 120
Query: 58 ----HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
H KI+ + G +I + F ++ E++ H+ + +
Sbjct: 121 DTVKHYKIRTLDNGGFYISP--RSTFSTLQELVDHYKKGNDGL 161
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 72.9 bits (179), Expect = 1e-16
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFM- 57
+A + WY G +TR E+E +L N+ G++LVR SE+ + Y LS+
Sbjct: 56 VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 115
Query: 58 ----HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
H KI++ G +I F+S+ +++ +++++ +
Sbjct: 116 LNVKHYKIRKLDSGGFYITS--RTQFNSLQQLVAYYSKHADGL 156
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 72.6 bits (178), Expect = 1e-16
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFM- 57
+A + WY G +TR E+E +L N+ G++LVR SE+ + Y LS+
Sbjct: 139 VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 198
Query: 58 ----HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
H KI++ G +I F+S+ +++ +++++ +
Sbjct: 199 LNVKHYKIRKLDSGGFYITS--RTQFNSLQQLVAYYSKHADGL 239
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 68.8 bits (167), Expect = 2e-15
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 14/124 (11%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
N ++ +WY G ++R EA +L+ G +LVR+S ++ DY LS+ H I
Sbjct: 3 GNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 62
Query: 62 QRDPDTGKFILGQFSAP--------------FDSVPEMIQHFAENRLPILGAEHMCLLHP 107
P FDS+P +++ + + L
Sbjct: 63 NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSR 122
Query: 108 MIEQ 111
Sbjct: 123 QGSG 126
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 67.0 bits (163), Expect = 4e-15
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMK 60
N + W+ G + R +AE +L G++L+R SES D+SLS+K H K
Sbjct: 50 KNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFK 109
Query: 61 IQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
+ RD GK+ L F+S+ E++ +
Sbjct: 110 VLRDGA-GKYFLWVVK--FNSLNELVDYHRST 138
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 64.1 bits (156), Expect = 1e-13
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 10 RNWYHGSVTRHEAENILR-NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG 68
R W+H ++T EAEN+L +GS+L R S+SN D +LS++ H+KIQ D
Sbjct: 4 RRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYY 63
Query: 69 KFILGQFSAPFDSVPEMIQHFAENR 93
G+ F ++ E++Q++ E+
Sbjct: 64 DLYGGE---KFATLAELVQYYMEHH 85
Score = 44.8 bits (106), Expect = 8e-07
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 4 PKPLDQRNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKIQ 62
P +R W+HG ++ EAE +L + GS+LVR S+S+ D+ LS++ G +
Sbjct: 105 ADPTSER-WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVR--TGDDKGESN 161
Query: 63 RDPDTGKFILGQFSAP---------FDSVPEMIQHFAENRL 94
++ + FDS+ ++++H+ +N +
Sbjct: 162 DGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPM 202
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein
tyrosine phosphatase, SHP-1, signaling, hydrolase;
2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 64.1 bits (156), Expect = 2e-13
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 12 WYHGSVTRHEAENILRNS-NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+H ++ +AE +L+ GS+L R S N+ D+SLS++ H++IQ D
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 71 ILGQFSAPFDSVPEMIQHFAENR 93
G+ F ++ E+++++ + +
Sbjct: 64 YGGE---KFATLTELVEYYTQQQ 83
Score = 34.5 bits (79), Expect = 0.004
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 22/112 (19%)
Query: 10 RNWYHGSVTRHEAENILR-NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP--- 65
WYHG ++ +AE +L+ ++LVR S S D+ LS+ S +
Sbjct: 108 ERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHI 167
Query: 66 ---------DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHP 107
G FDS+ ++++H + I A L
Sbjct: 168 KVMCEGGRYTVGGLET------FDSLTDLVEH--FKKTGIEEASGAFVYLRQ 211
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 63.0 bits (153), Expect = 4e-13
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 12 WYHGSVTRHEAENILRNS-NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
W+H ++ +AE +L+ GS+L R S N+ D+SLS++ H++IQ D
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 71 ILGQFSAPFDSVPEMIQHFAENR 93
G+ F ++ E+++++ + +
Sbjct: 64 YGGE---KFATLTELVEYYTQQQ 83
Score = 34.1 bits (78), Expect = 0.006
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 22/112 (19%)
Query: 10 RNWYHGSVTRHEAENILR-NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP--- 65
WYHG ++ +AE +L+ ++LVR S S D+ LS+ S +
Sbjct: 108 ERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHI 167
Query: 66 ---------DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHP 107
G FDS+ ++++H + I A L
Sbjct: 168 KVMCEGGRYTVGGLET------FDSLTDLVEH--FKKTGIEEASGAFVYLRQ 211
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 59.7 bits (144), Expect = 2e-12
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLK-----SA 53
+A L+ W+ +++R +AE L + GS+L+R SES +SLS++
Sbjct: 65 VAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQG 124
Query: 54 RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
H KI+ + G +I + F + E+++H+
Sbjct: 125 EVVKHYKIRNLDNGGFYISPR--ITFPGLHELVRHYTNA 161
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 58.6 bits (141), Expect = 4e-12
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 1 MANPKPLDQRNWYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKS------ 52
P + R++Y ++R EA +L + G++L+R+S S +YSL+++
Sbjct: 3 TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNA 61
Query: 53 ARGFMHMKIQRDPDTGKFI-LGQFSAPFDSVPEMIQHFAENRLP 95
++ + + D + + F +P ++ HF L
Sbjct: 62 VCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLT 105
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 55.2 bits (132), Expect = 2e-11
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLK----SARGFMHMKIQRDPD 66
V+R EA+ +L R G+ L+R S S++ + H K++R+
Sbjct: 23 SCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGP 82
Query: 67 TGKFILGQFSAPFDSVPEMIQHFAEN 92
I + S+ ++ +F +
Sbjct: 83 -KYVIDVEQPFSCTSLDAVVNYFVSH 107
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 56.8 bits (136), Expect = 5e-11
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 6 PLDQRNWYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSAR---GFMHMK 60
P + R++Y ++R EA +L + G++L+R+S S +YSL+++ A H
Sbjct: 37 PFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYL 95
Query: 61 IQRDPDTGKFIL-GQFSA---PFDSVPEMIQHFAENRLP 95
I+R F +P ++ HF L
Sbjct: 96 IERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLT 134
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 48.0 bits (114), Expect = 8e-08
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 YHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFIL 72
+HG ++R A+ +L + EGSYL+R S+ Y+L+L+ + ++ D GK +
Sbjct: 54 FHGMISREAADQLLIVA-EGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYD---GKHFV 109
Query: 73 GQFSAPFDSVPEMI 86
G+ F+S+ +++
Sbjct: 110 GEKR--FESIHDLV 121
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 44.7 bits (105), Expect = 3e-07
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 17/112 (15%)
Query: 4 PKPLDQRNWYHGSVTRHEAENILRNSNE------GSYLVRNSESNRPDYSLSLKSARGFM 57
P P + + E E + + ++ G Y +RNS + + +
Sbjct: 14 PLPNS---VFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKV 70
Query: 58 -HMKI-QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
+ +I ++D KF L F SV M++H+ + LP + + L HP
Sbjct: 71 RNYRIFEKD---SKFYLEG-EVLFVSVGSMVEHYHTHVLP--SHQSLLLRHP 116
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 42.3 bits (98), Expect = 6e-06
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Query: 2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
+ L Q +G + R E + L+N + G++++R SE N + ++ +K
Sbjct: 343 RHISTLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKH 402
Query: 62 QR-DPDTGKFILGQFSAPFDSVPEMIQHFAENRLP 95
P+ F + + +
Sbjct: 403 YLVQPNDTAAAKKTFPDFLSEHSQFVNLLQWTKDT 437
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 40.3 bits (94), Expect = 3e-05
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 17 VTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARG-FMHMKIQRDPDTGKFILGQF 75
+AE+ LR+ G +++R S +++ K + F H+ IQ LG+
Sbjct: 14 FNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPLALGKV 73
Query: 76 ----SAPFDSVPEMIQHFAEN 92
+ + ++I + +N
Sbjct: 74 LVVEGQRYHDLDQIIVEYLQN 94
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 34.1 bits (77), Expect = 0.006
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP 44
PL G +++ +L++ G++L+R SES+R
Sbjct: 435 LPLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSRE 474
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 32.4 bits (74), Expect = 0.008
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRN 28
+ WY G + R +AE+ +
Sbjct: 85 DSIQAEEWYFGKMGRKDAESGPSS 108
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 32.5 bits (73), Expect = 0.018
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP 44
L + G +++ IL G++L+R SES++
Sbjct: 451 LALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKE 490
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 32.6 bits (73), Expect = 0.018
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP 44
PL G +++ +L++ G++L+R SES+R
Sbjct: 570 LPLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSRE 609
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 31.3 bits (70), Expect = 0.053
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSES 41
KP G V + +A ++L N +G++L+R S+S
Sbjct: 459 KPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDS 495
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 25.9 bits (58), Expect = 2.8
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 46 YSLSLKSARGFMHMKIQRDPDTGKFILG-QFSAPFDSVPEMIQHFA 90
LS + FM K+ D ++ ++G + E+ Q
Sbjct: 400 NVLSGSPEKMFM--KLVVDGESRI-VVGAHVLGE--NAGEIAQLIG 440
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 3.2
Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 29/100 (29%)
Query: 3 NPKPLDQRNWYHGSVTRHEAENILRNS----NEGSYLVRN-------SESNRPDYSLSLK 51
+ + + N V+R + LR + ++ + + ++L
Sbjct: 122 DNQVFAKYN-----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-------WVALD 169
Query: 52 SARGFMHMKIQRDPDTGKF-I-LGQFSAPFDSVPEMIQHF 89
+ K+Q D F + L ++P ++V EM+Q
Sbjct: 170 VCLSY---KVQCKMDFKIFWLNLKNCNSP-ETVLEMLQKL 205
Score = 25.6 bits (55), Expect = 5.7
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 25/99 (25%)
Query: 25 ILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQ---RDP--DTGKFILGQFSAPF 79
L + E E R +Y F+ I+ R P T +I Q +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINY--------KFLMSPIKTEQRQPSMMTRMYI-EQRDRLY 120
Query: 80 DSVPEMIQHFAENRLPILGAEHMCL----------LHPM 108
+ ++ +RL L + +
Sbjct: 121 NDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGV 158
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 25.1 bits (55), Expect = 3.4
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 4 PKPLDQRNWYHGSVTRHEAENILRNSN 30
G R +AE + +
Sbjct: 58 RVDSGGGTSGGGRHRRRQAERMSQIKR 84
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 25.5 bits (56), Expect = 3.5
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 16 SVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARG 55
++ R EA L + +G + ++ + Y ++S G
Sbjct: 85 NIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVG 124
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 24.9 bits (55), Expect = 3.7
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 50 LKSARGFMHMKIQRDPDTG 68
LK+A+G + + ++ P +G
Sbjct: 75 LKAAQGSVKLVVRSGPSSG 93
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 25.6 bits (57), Expect = 4.4
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 11/49 (22%)
Query: 46 YSLSLKSARGFMHMKIQRDPDTGKF----ILGQFSAPFDSVPEMIQHFA 90
+++S + F+ KI + G +LG D PE+IQ
Sbjct: 404 HNISGSKYKKFV-AKIVTNHSDGTVLGVHLLG------DGAPEIIQAVG 445
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 25.5 bits (57), Expect = 4.9
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 46 YSLSLKSARGFMHMKIQRDPDTGKFILG-QFSAPFDSVPEMIQHFA 90
+LS + + M K+ + K ++G EM Q
Sbjct: 380 ATLSGRKEKTIM--KLVVNAADRK-VVGAHILGH--DAGEMAQLLG 420
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 25.6 bits (57), Expect = 4.9
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 46 YSLSLKSARGFMHMKIQRDPDTGKF----ILGQFSAPFDSVPEMIQHFA 90
Y++ + + KI K I+G DS E++Q F
Sbjct: 401 YAMLSEKSPTRY--KIVCAGPNEKVVGLHIVG------DSSAEILQGFG 441
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 25.6 bits (57), Expect = 5.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 46 YSLSLKSARGFMHMKIQRDPDTGKF----ILGQFSAPFDSVPEMIQHFA 90
+++S + + FM ++I + G+ +LG DS PE+IQ A
Sbjct: 400 HNISGSTYKKFM-VRIVTNHADGEVLGVHMLG------DSSPEIIQSVA 441
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 25.1 bits (55), Expect = 6.2
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 50 LKSARGFMHMKIQRDPD 66
L+ + +KI++D D
Sbjct: 180 LQQCEDLVKLKIRKDED 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,682,335
Number of extensions: 84007
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 101
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)