Query psy12509
Match_columns 194
No_of_seqs 113 out of 553
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:06:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2292|consensus 100.0 4.1E-38 8.9E-43 277.7 10.9 179 16-194 30-208 (751)
2 PF02516 STT3: Oligosaccharyl 100.0 2.1E-35 4.5E-40 265.1 -1.0 176 15-193 10-187 (483)
3 COG1287 Uncharacterized membra 100.0 4.4E-28 9.5E-33 229.2 19.1 173 16-194 26-208 (773)
4 TIGR03663 conserved hypothetic 99.5 4.3E-12 9.3E-17 113.7 18.9 153 13-192 5-157 (439)
5 PF13231 PMT_2: Dolichyl-phosp 99.0 1.1E-08 2.4E-13 78.0 13.0 104 79-190 4-107 (159)
6 COG1807 ArnT 4-amino-4-deoxy-L 99.0 5.1E-08 1.1E-12 89.2 17.4 158 13-190 11-170 (535)
7 PRK13279 arnT 4-amino-4-deoxy- 98.9 1.9E-07 4.2E-12 86.0 18.9 128 33-178 27-156 (552)
8 PF02366 PMT: Dolichyl-phospha 98.9 6.2E-08 1.3E-12 80.1 14.3 90 101-192 81-176 (245)
9 TIGR03766 conserved hypothetic 98.9 9.9E-08 2.1E-12 86.7 16.5 157 13-191 69-229 (483)
10 COG4745 Predicted membrane-bou 98.6 9.4E-07 2E-11 78.5 13.2 144 14-184 20-163 (556)
11 COG1928 PMT1 Dolichyl-phosphat 98.2 6.8E-06 1.5E-10 76.7 8.4 157 13-192 28-203 (699)
12 PF11028 DUF2723: Protein of u 97.9 0.00032 6.9E-09 55.9 12.2 90 100-191 38-149 (178)
13 KOG3359|consensus 97.8 0.00035 7.7E-09 65.6 13.0 154 16-192 42-215 (723)
14 PF10131 PTPS_related: 6-pyruv 97.8 0.00041 8.9E-09 65.0 13.1 108 77-190 3-111 (616)
15 PF03901 Glyco_transf_22: Alg9 97.7 0.0016 3.4E-08 58.0 14.6 148 15-177 2-154 (418)
16 COG5305 Predicted membrane pro 97.6 0.00033 7.1E-09 64.5 8.8 114 60-180 70-192 (552)
17 PLN02816 mannosyltransferase 97.4 0.013 2.9E-07 54.2 17.3 143 13-173 39-187 (546)
18 PF09852 DUF2079: Predicted me 97.3 0.019 4.2E-07 51.7 16.3 132 35-187 8-140 (449)
19 PF04188 Mannosyl_trans2: Mann 97.2 0.0079 1.7E-07 54.3 13.2 72 102-176 112-184 (443)
20 COG4346 Predicted membrane-bou 97.0 0.0073 1.6E-07 52.6 10.0 111 67-190 122-238 (438)
21 COG5617 Predicted integral mem 97.0 0.019 4.2E-07 54.5 13.5 158 13-181 7-168 (801)
22 PF04922 DIE2_ALG10: DIE2/ALG1 96.8 0.04 8.8E-07 48.8 13.7 115 37-169 9-127 (379)
23 PF09913 DUF2142: Predicted me 96.5 0.26 5.6E-06 43.3 16.2 95 78-180 95-191 (389)
24 COG3463 Predicted membrane pro 95.6 0.42 9E-06 43.0 13.2 137 18-174 17-159 (458)
25 KOG2647|consensus 93.3 0.53 1.1E-05 42.2 8.3 72 104-178 127-199 (444)
26 COG5542 Predicted integral mem 92.3 0.63 1.4E-05 41.6 7.4 92 77-173 95-187 (420)
27 PF11847 DUF3367: Domain of un 88.9 12 0.00025 35.9 12.8 100 91-194 64-167 (680)
28 PF10060 DUF2298: Uncharacteri 85.0 31 0.00067 31.6 17.8 86 32-131 74-160 (473)
29 COG4906 Predicted membrane pro 83.8 6.9 0.00015 36.2 8.2 77 99-177 256-333 (696)
30 TIGR03459 crt_membr carotene b 70.5 89 0.0019 28.8 13.8 129 32-174 93-235 (470)
31 PF09586 YfhO: Bacterial membr 64.2 1.4E+02 0.0031 28.9 17.1 78 100-181 87-168 (843)
32 PLN02841 GPI mannosyltransfera 63.7 1.2E+02 0.0026 27.7 15.4 135 14-173 10-152 (440)
33 PF09594 DUF2029: Protein of u 56.9 97 0.0021 24.5 12.3 71 114-190 32-106 (241)
34 KOG3893|consensus 50.1 1.8E+02 0.004 25.7 10.4 72 102-175 95-167 (405)
35 PF11345 DUF3147: Protein of u 49.3 99 0.0022 22.4 9.3 35 111-145 6-41 (108)
36 PF10034 Dpy19: Q-cell neurobl 49.0 2.1E+02 0.0045 27.5 10.3 109 61-178 63-182 (642)
37 COG5650 Predicted integral mem 47.9 14 0.0003 34.3 2.3 132 34-190 114-246 (536)
38 PF10958 DUF2759: Protein of u 47.4 60 0.0013 20.5 4.4 27 163-189 4-30 (52)
39 TIGR02005 PTS-IIBC-alpha PTS s 40.9 87 0.0019 29.2 6.4 61 116-192 290-350 (524)
40 PRK10110 bifunctional PTS syst 38.0 97 0.0021 28.9 6.2 62 116-193 305-366 (530)
41 PF10753 DUF2566: Protein of u 37.6 90 0.002 20.0 4.2 39 105-145 5-43 (55)
42 TIGR02003 PTS-II-BC-unk1 PTS s 37.2 99 0.0021 29.0 6.1 62 116-193 320-381 (548)
43 PRK09272 hypothetical protein; 36.6 1.7E+02 0.0036 21.4 10.2 39 109-148 6-44 (109)
44 PRK10255 PTS system N-acetyl g 36.2 1.1E+02 0.0024 29.3 6.4 62 116-193 244-305 (648)
45 TIGR02004 PTS-IIBC-malX PTS sy 35.3 1.2E+02 0.0026 28.2 6.4 62 116-193 296-357 (517)
46 PF04306 DUF456: Protein of un 35.3 2E+02 0.0043 21.8 14.1 96 77-184 5-106 (140)
47 COG3924 Predicted membrane pro 31.3 78 0.0017 21.5 3.3 32 96-127 41-72 (80)
48 PF14897 EpsG: EpsG family 27.5 3.5E+02 0.0076 22.3 14.6 26 106-131 66-91 (330)
49 TIGR01165 cbiN cobalt transpor 27.5 2.3E+02 0.0049 20.1 5.4 52 12-69 6-62 (91)
50 COG1346 LrgB Putative effector 24.9 4E+02 0.0088 22.1 7.4 23 108-130 5-27 (230)
51 PF03597 CcoS: Cytochrome oxid 24.9 1.1E+02 0.0025 18.6 3.0 22 159-180 8-29 (45)
52 KOG2642|consensus 24.8 56 0.0012 29.2 2.2 114 37-172 34-151 (446)
53 TIGR00847 ccoS cytochrome oxid 24.3 1.2E+02 0.0025 19.1 3.0 22 159-180 9-30 (51)
54 COG1930 CbiN ABC-type cobalt t 24.0 2.7E+02 0.0059 19.8 5.2 33 32-70 29-62 (97)
55 TIGR01998 PTS-II-BC-nag PTS sy 21.1 3.1E+02 0.0067 25.2 6.4 29 156-192 290-318 (476)
56 PRK04288 antiholin-like protei 20.7 5E+02 0.011 21.6 7.6 18 112-129 11-28 (232)
No 1
>KOG2292|consensus
Probab=100.00 E-value=4.1e-38 Score=277.72 Aligned_cols=179 Identities=74% Similarity=1.320 Sum_probs=175.7
Q ss_pred HHHHHHHHhhhhhccccccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHHHHHHHHHHhh
Q psy12509 16 FKAAFSTRLFSVLRFESVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTSAVLYHLMWLL 95 (194)
Q Consensus 16 ~l~a~~iRl~~~~~~~~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~a~i~~~~~~~ 95 (194)
..++|..|++.+.+++..++|+|||+|||.++.+.|||.+++.+|+|.-.|||-||.+|++.||++..+++.+++.++.+
T Consensus 30 ~v~~fssRLFaVirfESiIHEFDP~FNYR~T~~l~~~GfY~F~NWFDdRaWYPLGRiiGGTvYPGLmiTsg~I~~~L~~L 109 (751)
T KOG2292|consen 30 AVLSFSSRLFAVIRFESIIHEFDPWFNYRATRFLVENGFYKFLNWFDDRAWYPLGRIIGGTVYPGLMITSGLIYWVLHFL 109 (751)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCchhhhHHHHHHHHhhHHHHHhhcccccccccceeecccccchHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Q psy12509 96 NITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKA 175 (194)
Q Consensus 96 g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a 175 (194)
+.++++.++|.++-|+++.++.+..|++.||+.+..+|++||.++|+.|++++||.+|.+|+|..++|.++++.|+++|+
T Consensus 110 ~i~v~Ir~VCVflAP~FSg~TsiaTY~ltkEl~~~gaGL~AA~fiaivPgYiSRSVAGSYDNE~IAIfal~~T~ylwiKa 189 (751)
T KOG2292|consen 110 NIPVHIRNVCVFLAPLFSGLTSIATYLLTKELKSAGAGLLAAAFIAIVPGYISRSVAGSYDNEGIAIFALLFTYYLWIKA 189 (751)
T ss_pred ccceeehheeeEechhhhchHHHHHHHHHHHHhcccccHHHHHHHhhCcccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 99899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHhhhcC
Q psy12509 176 VKTGSILWSALTALAYFYM 194 (194)
Q Consensus 176 ~~~~~~~~~~~ag~~~~~~ 194 (194)
+|+++..|+..|+++|+||
T Consensus 190 vkTGSifwa~~~aL~YFYM 208 (751)
T KOG2292|consen 190 VKTGSIFWAACCALAYFYM 208 (751)
T ss_pred hhcchHHHHHHHHHHHHhh
Confidence 9999999999999999998
No 2
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=100.00 E-value=2.1e-35 Score=265.07 Aligned_cols=176 Identities=35% Similarity=0.695 Sum_probs=134.9
Q ss_pred HHHHHHHHHhhhhhccccccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHHHHHHHHHHh
Q psy12509 15 AFKAAFSTRLFSVLRFESVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTSAVLYHLMWL 94 (194)
Q Consensus 15 i~l~a~~iRl~~~~~~~~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~a~i~~~~~~ 94 (194)
+..++...|++...+++..++|+|||||+|++|+++|||+++..+|+|+.+|||+|+++.. .|.++.+.+.++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~Dpyy~~r~~~~~~~~G~~~~~~~fd~~~~yP~G~~i~~--~pl~~~l~~~~~~~~~~ 87 (483)
T PF02516_consen 10 IFRLAFYYRVFSVFDGGPYLNEFDPYYHYRLIEYIVNNGIFPFYNWFDPFTWYPWGRPIDW--PPLFPYLTAAFYAILGG 87 (483)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSS-GGGEETTEE--S-HHHHHHHHHHHHHHS---TTS---T--T-HHHHHHHHHHHS-SS
T ss_pred HHHHHHHhceeeeeeceeeeeCCCHHHHHHHHHHHHHcCCCcccCcCCccccCCCCCccCc--ccHHHHHHHHHHHHHHH
Confidence 3456777777776677788899999999999999999997666789999999999998742 25666666777777775
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH
Q psy12509 95 LNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIK 174 (194)
Q Consensus 95 ~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~ 174 (194)
.+. .++++++.++||++|+++++++|+++||++|+++|++||++.|++|++++||++|++|||++++++++++++++++
T Consensus 88 ~~~-~~l~~v~~~~ppvl~~L~vi~~y~~~~~~~~~~~Gl~aA~l~a~~p~~l~RT~~G~~D~~~~~~~f~~l~~~~~~~ 166 (483)
T PF02516_consen 88 FGP-VSLYEVAFWLPPVLGALTVIPVYLLGRRLGGRKAGLLAAFLLAISPGYLSRTMAGFYDHHMLELFFPLLIIYFFLL 166 (483)
T ss_dssp -HH-----HHHHHHHHHHGGGGHHHHHHHHHHTT-HHHHHHHHHHHTTSHHHHHTSSTT--SGGGGTTHHHHHHHHHHHH
T ss_pred hcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHhcCCCcccchHHHHHHHHHHHHHHH
Confidence 543 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCc--HHHHHHHHHhhhc
Q psy12509 175 AVKTGS--ILWSALTALAYFY 193 (194)
Q Consensus 175 a~~~~~--~~~~~~ag~~~~~ 193 (194)
++|+++ ..+++++|+++.+
T Consensus 167 a~~~~~~~~~~~~laGl~~~l 187 (483)
T PF02516_consen 167 ALKSAKRPLIYAVLAGLALGL 187 (483)
T ss_dssp HHHH------THHHHHHHHHH
T ss_pred HHhccchhhHHHHHHHHHHHH
Confidence 999998 8899999998764
No 3
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=99.96 E-value=4.4e-28 Score=229.18 Aligned_cols=173 Identities=27% Similarity=0.518 Sum_probs=143.6
Q ss_pred HHHHHHHHhhh---hhcc-ccccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecC-CccccHHHHHHHHHHH
Q psy12509 16 FKAAFSTRLFS---VLRF-ESVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIG-GTIYPGLMVTSAVLYH 90 (194)
Q Consensus 16 ~l~a~~iRl~~---~~~~-~~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~-~~~~P~l~~~~a~i~~ 90 (194)
+.+++.+|... .+.+ |.+++|+|||||+|.+|++++||.. ..++||+.+||+|.+++ +| .+.+..+..+.
T Consensus 26 ~~~~f~v~~~~~~~~~~~~g~y~~e~Dpyy~~r~~~~~l~~g~~--~~~~~~~~~YP~G~~i~~~p---l~~~l~~~~~~ 100 (773)
T COG1287 26 LVLGFLVRAFTRSYAFDDPGVYFGEFDPYYHYRLIENLLKNGPP--RDFFDPYDNYPPGSPIDFPP---LFLYLTAALGL 100 (773)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCcHHHHHHHHHHHHhCCC--ccCCChhhcCCCCCCCCCCc---hHHHHHHHHHH
Confidence 44556677666 2233 3588999999999999999999842 45789999999998886 33 33334444444
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q psy12509 91 LMWLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYY 170 (194)
Q Consensus 91 ~~~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~ 170 (194)
+++.. .+.++++++.++|+++|+|+++++|+++||++|++.|++||++.+++|++++||++|+.|||++++++.+++++
T Consensus 101 ~~~~~-~~~~~~~~~~~~PailG~L~vI~vYl~~r~i~~~~~g~~aa~ll~~~p~~~~rt~~G~~d~~~~~~~~~~~~l~ 179 (773)
T COG1287 101 ILGSI-FPVSLETAALLFPAILGVLTVIPVYLLGRRILGDKTGLLAALLLALAPGYLSRTVAGFYDTDMFELLLPLFALF 179 (773)
T ss_pred HHHcc-CchHHHHHHHHhhHHHhhHHHHHHHHHHHHHhcchhhHHHHHHHHHhhHHHHHhhcCccCCCchHHHHHHHHHH
Confidence 55432 23589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-----CcHHHHHHHHHhhhcC
Q psy12509 171 SWIKAVKT-----GSILWSALTALAYFYM 194 (194)
Q Consensus 171 ~~~~a~~~-----~~~~~~~~ag~~~~~~ 194 (194)
++.+++++ ++.+++++||++++++
T Consensus 180 ~~~~aL~~~~~~~~~~~~~~lag~~~~l~ 208 (773)
T COG1287 180 FFLLALKAAKKLKKPVIYALLAGLALGLL 208 (773)
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 99999994 6679999999998763
No 4
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=99.48 E-value=4.3e-12 Score=113.74 Aligned_cols=153 Identities=23% Similarity=0.240 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhhhhhccccccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHHHHHHHHH
Q psy12509 13 PSAFKAAFSTRLFSVLRFESVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTSAVLYHLM 92 (194)
Q Consensus 13 ~~i~l~a~~iRl~~~~~~~~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~a~i~~~~ 92 (194)
..+.++++.+|+... ... . -+.|.-.|.+.+++++++|.+. +||..+ -|.+.++.+..+++
T Consensus 5 ~~i~l~al~lRl~~L-g~~-~-~~~DEa~ya~~a~~ml~~g~~~----~~p~~h-----------~Pll~wl~A~~~~l- 65 (439)
T TIGR03663 5 ILIVLFALLLRLFEL-GLR-V-FHHDEAIHASFILKLLETGVYS----YDPAYH-----------GPFLYHITAAVFHL- 65 (439)
T ss_pred HHHHHHHHHHHHHhc-CCC-C-CCCCchhHHHHHHHHHhcCCCC----cCCCCC-----------CCHHHHHHHHHHHH-
Confidence 356789999999983 322 3 4789999999999999988532 355311 16666778886665
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHH
Q psy12509 93 WLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSW 172 (194)
Q Consensus 93 ~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~ 172 (194)
+|. .+..+|+.|+++| ++++.+|.+.|+..|+++|++||++.+++|.++..+. +..+|++..+|.+++++++
T Consensus 66 --FG~---se~a~RL~~aL~g-~~v~l~~~~~r~~~~~~~al~AAllla~sp~~~~~sr--~~~~D~~l~~f~~lal~~l 137 (439)
T TIGR03663 66 --FGI---SDATARLLPAVFG-VLLPLTAWLYRKRLGDNEVLWAAVLLAFSPVMVYYSR--FMRNDIFVAFFTLLAVGAA 137 (439)
T ss_pred --hCC---CHHHHHHHHHHHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhHHHHHHHH--HHhHHHHHHHHHHHHHHHH
Confidence 553 3567999999999 5577788899999999999999999999999876554 4578999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHhhh
Q psy12509 173 IKAVKTGSILWSALTALAYF 192 (194)
Q Consensus 173 ~~a~~~~~~~~~~~ag~~~~ 192 (194)
+++.++++.++..++|++.+
T Consensus 138 ~r~~~~~~~~~~~lag~~~g 157 (439)
T TIGR03663 138 FRYLDTGKRRYLFLAASALA 157 (439)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 99999999988888887765
No 5
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=99.01 E-value=1.1e-08 Score=78.02 Aligned_cols=104 Identities=23% Similarity=0.413 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchH
Q psy12509 79 PGLMVTSAVLYHLMWLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNE 158 (194)
Q Consensus 79 P~l~~~~a~i~~~~~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e 158 (194)
|......+..+++ +|. .....++.+.+++.++++.+|.++|+.+|++.+++++++.++.|....-+. ...+|
T Consensus 4 Pl~~~~~~~~~~l---~G~---~~~~~~~~~~l~~~~~~~~~y~i~r~~~~~~~a~~~~l~~~~~p~~~~~~~--~~~~~ 75 (159)
T PF13231_consen 4 PLYFLLLALFFKL---FGD---SVWALRLFNILFSLLTLLLIYLIARRLFGRRAALIAALLLALSPMFIFYSA--SARPD 75 (159)
T ss_pred hHHHHHHHHHHHH---hCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHhHHHHHHHH--HHhHH
Confidence 4445567776665 452 345789999999999999999999999999999999999999999765554 34679
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh
Q psy12509 159 AIAIFCMLLTYYSWIKAVKTGSILWSALTALA 190 (194)
Q Consensus 159 ~~~~~~~ll~i~~~~~a~~~~~~~~~~~ag~~ 190 (194)
++..++..+.+|...+..|+++.++.+++|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (159)
T PF13231_consen 76 MLLLFFFLLALYAFYRYIKSKKWRWWILAGLL 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999999999999999999996665555554
No 6
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=98.96 E-value=5.1e-08 Score=89.21 Aligned_cols=158 Identities=19% Similarity=0.204 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhhhhhccccccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHH-HHHHHHHH
Q psy12509 13 PSAFKAAFSTRLFSVLRFESVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMV-TSAVLYHL 91 (194)
Q Consensus 13 ~~i~l~a~~iRl~~~~~~~~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~-~~a~i~~~ 91 (194)
.++++++...++..+...+ . ...|.=.+...++++.+.| +|..|..+ |.... ..|++.+ +.+..+++
T Consensus 11 ~llll~~~~~~l~~l~~~~-~-~~~de~~~~~~~~~m~~s~-----~w~~~~~~---g~~~~--~kPPl~~Wl~a~~~~l 78 (535)
T COG1807 11 WLLLLIALALLLPGLGSRP-L-WDPDEARYAEIAREMLESG-----DWFTPQLL---GLPYF--EKPPLVYWLQALSYLL 78 (535)
T ss_pred HHHHHHHHHHHhCccccCC-C-CCCCchhHHHHHHHHHHcC-----CCcceeeC---Ccccc--CCCcHHHHHHHHHHHH
Confidence 3445566666665533222 2 2366667799999999986 34444322 33222 3466666 67776665
Q ss_pred HHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Q psy12509 92 MWLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYS 171 (194)
Q Consensus 92 ~~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~ 171 (194)
+|. .+...|+..++.++++++.+|.++|+++++++|++|+++++..|..+.-+ ....+|+...+|..++++.
T Consensus 79 ---fG~---~~~~~rl~~~l~~~~~~~l~y~l~k~l~~~~~a~~aali~~~~p~~~~~~--~~~~~D~~l~~f~~la~~~ 150 (535)
T COG1807 79 ---FGV---NEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALILLLTPLFFLIG--RLALLDAALAFFLTLALAL 150 (535)
T ss_pred ---cCc---chHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh--HHHhhhHHHHHHHHHHHHH
Confidence 452 34568999999999999999999999999999999999999999966432 3456799999999999999
Q ss_pred HHHHHHhC-cHHHHHHHHHh
Q psy12509 172 WIKAVKTG-SILWSALTALA 190 (194)
Q Consensus 172 ~~~a~~~~-~~~~~~~ag~~ 190 (194)
+.++.+.+ +..+...+|++
T Consensus 151 ~~~~~~~~~~~~~~l~~gl~ 170 (535)
T COG1807 151 LYLALRARGKLKWLLLLGLA 170 (535)
T ss_pred HHHHHHhcCcccHHHHHHHH
Confidence 99999974 54444444443
No 7
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=98.90 E-value=1.9e-07 Score=85.96 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=93.2
Q ss_pred ccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHH-HHHHHHHHHHhhccchhHHHHHHHHHHH
Q psy12509 33 VIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMV-TSAVLYHLMWLLNITIDIRNVCVFLAPF 111 (194)
Q Consensus 33 ~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~-~~a~i~~~~~~~g~~~~l~~~~~~~p~i 111 (194)
.+.+.|+=.|...+++++++| +|..|+.+ |.+. ...|++.+ +.++.+++ +|. .+..+|+.+++
T Consensus 27 ~lw~~DE~ryA~iareMl~sG-----dWlvP~~~---g~~y--~eKPPL~yWl~Als~~L---FG~---~~~a~RLpsaL 90 (552)
T PRK13279 27 LLWQPDETRYAEISREMLASG-----DWIVPHFL---GLRY--FEKPIAGYWINSIGQWL---FGD---NNFGVRFGSVF 90 (552)
T ss_pred CCCCCchHHHHHHHHHHHHhC-----CcCccccC---CCcC--CCCCcHHHHHHHHHHHH---cCC---CcHHHHHHHHH
Confidence 345678889999999999987 45565432 2221 13466665 67775665 553 34679999999
Q ss_pred HHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh
Q psy12509 112 FSSLTTIVTYLLTKEVK-DTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVKT 178 (194)
Q Consensus 112 ~~~l~ii~vy~l~~~l~-~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~~ 178 (194)
.+.++++.+|.++|+++ +++.|++|+++...++.....+... ..|+...++..++++.+..+.++
T Consensus 91 ~~~lt~llvy~larrl~~~r~~AllAaLIlls~~~v~~~g~~a--~~D~~l~~fi~lal~~f~~~~~~ 156 (552)
T PRK13279 91 STLLSALLVYWLALRLWRDRRTALLAALIYLSLFLVYGIGTYA--VLDPMITLWLTAAMCSFWLALQA 156 (552)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999997 5789999999999988866544332 45677777777777666666653
No 8
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=98.90 E-value=6.2e-08 Score=80.11 Aligned_cols=90 Identities=22% Similarity=0.338 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH---
Q psy12509 101 IRNVCVFLAPFFSSLTTIVTYLLTKEVKD-TGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAV--- 176 (194)
Q Consensus 101 l~~~~~~~p~i~~~l~ii~vy~l~~~l~~-~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~--- 176 (194)
.+...|+.|+++|+++++.+|+++|++++ +++|++|+++.++.|.++.-+. ...+|+...++.+++++.+.+..
T Consensus 81 ~~~~~R~~~~l~~~~~~~l~y~~~~~~~~s~~~al~aa~l~~~~~~~~~~sr--~~~~D~~l~~f~~la~~~~~~~~~~~ 158 (245)
T PF02366_consen 81 NYWAARLPSALFGALTVPLVYLILRRLFGSRRAALLAALLLALDPSLIVQSR--YALLDSILLFFILLAIYCLLRWYRYQ 158 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 45579999999999999999999999986 7999999999999999775443 45789999999999999999996
Q ss_pred --HhCcHHHHHHHHHhhh
Q psy12509 177 --KTGSILWSALTALAYF 192 (194)
Q Consensus 177 --~~~~~~~~~~ag~~~~ 192 (194)
++++..+.+++|++.+
T Consensus 159 ~~~~~~~~~~~l~gi~lG 176 (245)
T PF02366_consen 159 PFRRKWWLWLLLAGIALG 176 (245)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 3344566777776643
No 9
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=98.89 E-value=9.9e-08 Score=86.67 Aligned_cols=157 Identities=13% Similarity=0.081 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhhhhhccccccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHHHHHHHHH
Q psy12509 13 PSAFKAAFSTRLFSVLRFESVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTSAVLYHLM 92 (194)
Q Consensus 13 ~~i~l~a~~iRl~~~~~~~~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~a~i~~~~ 92 (194)
..++++++.+|++.++...... +.|+..-+..|++ |.. ...-+....||+-. ++....+.++++
T Consensus 69 ~~l~~~~~i~ql~~i~~~~~~p-~~D~~~v~~~A~~----~~~--~~~~~Y~~~yPnn~--------g~~l~~~~l~ki- 132 (483)
T TIGR03766 69 IVIFILLLILQLILVTALHPLI-GWDAGAVHTAATK----SNE--SSISNYFSRNPNNL--------FLLLFMHFLYKL- 132 (483)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-CcCHHHHHHHHhc----CCC--cccCceeeECCchH--------HHHHHHHHHHHH-
Confidence 4446778899999987655443 6899877777763 211 11112233345332 455556666665
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHH
Q psy12509 93 WLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSW 172 (194)
Q Consensus 93 ~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~ 172 (194)
+|. +...+...+..++..+++..+|.++|+++|++.|.+|+++.++.|++..-.. +.-+|.+.+++.++.++++
T Consensus 133 --fg~--~~~~~~~llNil~~~~si~liy~i~k~lf~~~~a~~a~~l~~l~~~~~~y~~--~~Ysd~~~l~~~~l~l~~~ 206 (483)
T TIGR03766 133 --FGE--TSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALSPYIL--IPYTDTWVLPFVSLFLFLY 206 (483)
T ss_pred --hCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHH
Confidence 443 2344578999999999999999999999999999999999999999654333 3457888888888888877
Q ss_pred HHHHHhCc----HHHHHHHHHhh
Q psy12509 173 IKAVKTGS----ILWSALTALAY 191 (194)
Q Consensus 173 ~~a~~~~~----~~~~~~ag~~~ 191 (194)
....|+++ ..+++++|+..
T Consensus 207 ~~~~~~~~~~~~~~~~Il~gill 229 (483)
T TIGR03766 207 TVISKKTDLRKKIALSILLGVLL 229 (483)
T ss_pred HHHHhcccHHHHHHHHHHHHHHH
Confidence 77666444 34566777643
No 10
>COG4745 Predicted membrane-bound mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=9.4e-07 Score=78.54 Aligned_cols=144 Identities=17% Similarity=0.228 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhhhhhccccccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHHHHHHHHHH
Q psy12509 14 SAFKAAFSTRLFSVLRFESVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTSAVLYHLMW 93 (194)
Q Consensus 14 ~i~l~a~~iRl~~~~~~~~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~a~i~~~~~ 93 (194)
.+.++++++|+.. +... .++ .|.=-|-.-+..++++|-.. ++|..+ | |.+.+.....++
T Consensus 20 ~vv~~Al~~RL~~-Lg~r-~~h-~DEs~~~~w~Lk~l~~Gaw~----YrPi~H---G--------PfL~hvn~avF~--- 78 (556)
T COG4745 20 AVVAIALLARLYN-LGLR-PFH-FDESRHATWILKYLEQGAWS----YRPIYH---G--------PFLYHVNYAVFG--- 78 (556)
T ss_pred HHHHHHHHHHHHh-cCCC-ccc-cchhhHHHHHHHHHhcCcce----eccccc---C--------chhhhhhhhhhh---
Confidence 4467899999987 3333 333 57767766555556888643 355321 2 677777777444
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Q psy12509 94 LLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWI 173 (194)
Q Consensus 94 ~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~ 173 (194)
.+|. .+..+|++|++.|+++....++.=+|+.++.+ +..+.+.|++|..++.|. |.++|++-.+|+++++.+..
T Consensus 79 ~lGa---sDataRlvvAv~G~llpL~awL~R~rL~d~ev-lal~~LLA~sPvlVYYSR--FmR~Dl~la~ftl~aVg~~v 152 (556)
T COG4745 79 LLGA---SDATARLVVAVTGVLLPLTAWLYRTRLGDKEV-LALATLLAFSPVLVYYSR--FMRNDLLLAAFTLLAVGFAV 152 (556)
T ss_pred hccc---chhhhhhhHHHhhhHHHHHHHHHHHhccchHH-HHHHHHHhcChhhhhHHH--HHhhhHHHHHHHHHHHHHHH
Confidence 4553 45679999999999999999999888866555 466677789999554443 46899999999999999999
Q ss_pred HHHHhCcHHHH
Q psy12509 174 KAVKTGSILWS 184 (194)
Q Consensus 174 ~a~~~~~~~~~ 184 (194)
++.++++.++.
T Consensus 153 R~lDt~R~~yL 163 (556)
T COG4745 153 RYLDTERFRYL 163 (556)
T ss_pred HHhhcccccch
Confidence 99999975553
No 11
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=6.8e-06 Score=76.69 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhhhhhccccccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHH-HHHHHHHHH
Q psy12509 13 PSAFKAAFSTRLFSVLRFESVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLM-VTSAVLYHL 91 (194)
Q Consensus 13 ~~i~l~a~~iRl~~~~~~~~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~-~~~a~i~~~ 91 (194)
+.+..+++.+|+.-+-....+. .|.-....-+.+.++|- ..+|.+ |++. ++.+....+
T Consensus 28 ~~lt~ls~~~R~~~i~~~~~VV--fdE~hfgkFaS~Yl~~~-----~~fDvH--------------PPL~kml~al~~~L 86 (699)
T COG1928 28 VLLTVLSFIVRFWKIGNPNTVV--FDEAHFGKFASYYLNGT-----PFFDVH--------------PPLGKMLIALVGGL 86 (699)
T ss_pred hHHHHHHHHHHHHhcCCCCeEE--EeeeeeccchHHhhcCC-----cccccC--------------CcHHHHHHHhhhhh
Confidence 3456789999988753333222 35544455555666642 234531 2332 345554445
Q ss_pred HHhhc---cc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhccCCCchH
Q psy12509 92 MWLLN---IT---------IDIRNVCVFLAPFFSSLTTIVTYLLTKEVK-DTGSGLVAAAMISIVPGYISRSVAGSYDNE 158 (194)
Q Consensus 92 ~~~~g---~~---------~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~-~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e 158 (194)
.|.-| .+ ...+...|+.++++|++++.++|+++|++. ++.++.+|+++.++--.++. ..=++.-|
T Consensus 87 ~g~~g~f~f~~~g~~~~~~~~~y~~mR~f~A~lgsl~vpl~y~t~r~~~~s~l~~~l~~llv~~dn~~~t--~sR~ILLD 164 (699)
T COG1928 87 EGYDPPFDFQLIGLTEYPFGYNYVGMRFFNALLGSLTVPLVYLIARRIGYSRLVAALAGLLVAFDNSFVT--ESRFILLD 164 (699)
T ss_pred hccCCCcccccCCcccccCCCChHHHHHHHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHhccchhh--hhHHHHHH
Confidence 43211 10 013456899999999999999999999997 45788999999988777653 22345678
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-----cHHHHHHHHHhhh
Q psy12509 159 AIAIFCMLLTYYSWIKAVKTG-----SILWSALTALAYF 192 (194)
Q Consensus 159 ~~~~~~~ll~i~~~~~a~~~~-----~~~~~~~ag~~~~ 192 (194)
...+||+..+.|++++.-+.+ ...+.+++|++.+
T Consensus 165 s~LlfF~~~~~y~~~r~~~~~p~s~~w~~~Ll~tGisLG 203 (699)
T COG1928 165 SFLLFFIVAAAYCFLRFHRQQPFSRRWLKWLLLTGISLG 203 (699)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHhcceee
Confidence 999999999999999998854 2456888888764
No 12
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=97.91 E-value=0.00032 Score=55.87 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------------hHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q psy12509 100 DIRNVCVFLAPFFSSLTTIVTYLLTKEVKDT--------------GSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCM 165 (194)
Q Consensus 100 ~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~--------------~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ 165 (194)
+.-...-++.++.|++++..+|++.+++.++ .+|+++|+..++++.+...+..+ +-.+++.++.
T Consensus 38 ~ia~~vNl~Sal~sA~tv~~l~~~~~~l~~~~~~~~~~~~~~~~~~a~lv~al~fafS~sfW~~Av~a--EVYal~~l~~ 115 (178)
T PF11028_consen 38 NIAWRVNLLSALSSALTVLFLFWSITRLLRKLPEEPSTAQTIAILGAGLVGALAFAFSDSFWFQAVEA--EVYALSSLFT 115 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHH
Confidence 3434456899999999999999999999887 77999999999999988765432 3456688889
Q ss_pred HHHHHHHHHHHHh----CcHHH----HHHHHHhh
Q psy12509 166 LLTYYSWIKAVKT----GSILW----SALTALAY 191 (194)
Q Consensus 166 ll~i~~~~~a~~~----~~~~~----~~~ag~~~ 191 (194)
.+.+|+.+|-.++ ++.++ +.++|++.
T Consensus 116 al~~~l~l~w~~~~~~~~~~r~l~l~afl~GLs~ 149 (178)
T PF11028_consen 116 ALLLWLLLKWEREADEPRSDRWLLLIAFLCGLSL 149 (178)
T ss_pred HHHHHHHHHHhhhccccccchHHHHHHHHHHHHH
Confidence 9999998887765 33333 55566664
No 13
>KOG3359|consensus
Probab=97.84 E-value=0.00035 Score=65.63 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=104.8
Q ss_pred HHHHHHHHhhhhhccccccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHH-HHHHHHHHHHHh
Q psy12509 16 FKAAFSTRLFSVLRFESVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLM-VTSAVLYHLMWL 94 (194)
Q Consensus 16 ~l~a~~iRl~~~~~~~~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~-~~~a~i~~~~~~ 94 (194)
.++++..|+.-+-.-..+ =.|.-.+-.-+.+.++|-. .+|.+ ||+- ++.++.-.+.|.
T Consensus 42 t~l~f~~Rf~ki~~p~~V--VwDE~HfGkf~S~Yl~~~f-----f~DvH--------------PPlgKmL~al~g~L~Gy 100 (723)
T KOG3359|consen 42 TVLAFITRFYKIATPNHV--VWDEAHFGKFASYYLNNIF-----FFDVH--------------PPLGKMLIALVGYLAGY 100 (723)
T ss_pred HHHHHHHHHHhccCCCeE--EEecccccchHHHHhcCce-----eeccC--------------chHHHHHHHHHHHHhCC
Confidence 578999998874322222 2456444566667777532 34532 3443 355555555552
Q ss_pred hcc----c-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Q psy12509 95 LNI----T-------IDIRNVCVFLAPFFSSLTTIVTYLLTKEVK-DTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAI 162 (194)
Q Consensus 95 ~g~----~-------~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~-~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~ 162 (194)
-|. + ...+...|..|+++|++++..+|++.|++. +..++.++|++.++--+++. ..-++.-|...+
T Consensus 101 dG~f~f~~~g~~~~~~~~y~~mR~f~a~lgsl~vp~~y~t~~~~~~s~~aa~l~allv~~dns~~T--~sr~ILLDs~Ll 178 (723)
T KOG3359|consen 101 DGSFDFQSIGEYYPNGVPYVGMRLFSALLGSLTVPLAYLTLKELGFSRLAAALAALLVLFDNSLVT--LSRFILLDSMLL 178 (723)
T ss_pred CCCccccCCCccCCCCCchHhHHHHHHHHHhHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchh--hhhHHHHhHHHH
Confidence 210 0 014557899999999999999999999996 56788899999888777553 334567799999
Q ss_pred HHHHHHHHHHHHHH--HhCc-----HHHHHHHHHhhh
Q psy12509 163 FCMLLTYYSWIKAV--KTGS-----ILWSALTALAYF 192 (194)
Q Consensus 163 ~~~ll~i~~~~~a~--~~~~-----~~~~~~ag~~~~ 192 (194)
||++.++|.+.|.- +++- ..|..++|++.+
T Consensus 179 ff~~~~~y~~~r~~~~~~~pfs~~W~~wL~~tGvsLg 215 (723)
T KOG3359|consen 179 FFMAAAVYCFVRFYTQRKRPFSLRWWKWLLLTGVSLG 215 (723)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhh
Confidence 99999999999987 2211 355788888764
No 14
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=97.81 E-value=0.00041 Score=65.01 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=75.9
Q ss_pred cccHHHH-HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCC
Q psy12509 77 IYPGLMV-TSAVLYHLMWLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSY 155 (194)
Q Consensus 77 ~~P~l~~-~~a~i~~~~~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~ 155 (194)
.||++++ +.+++..++ | +...+..+.-.+...++.+.+|..+|++..+..|+++|++..++|.++.--..+.-
T Consensus 3 FYpPL~yyl~a~l~~l~---g---~~~~Ay~l~~~L~~~l~~~~~Y~~~R~~~~~~~A~l~aiLyl~~py~l~~~y~rgn 76 (616)
T PF10131_consen 3 FYPPLPYYLGALLSLLF---G---NPIVAYKLFIFLAFFLGGLGMYFLGRRLGRRKAAILAAILYLFSPYHLRNIYWRGN 76 (616)
T ss_pred eCCcHHHHHHHHHHHHh---C---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhHHHHHHHHhcch
Confidence 5788887 455544443 3 22333444445555567777999999998889999999999999987744344445
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh
Q psy12509 156 DNEAIAIFCMLLTYYSWIKAVKTGSILWSALTALA 190 (194)
Q Consensus 156 d~e~~~~~~~ll~i~~~~~a~~~~~~~~~~~ag~~ 190 (194)
..|.++..++.+.++...+..++++.+..+..+++
T Consensus 77 i~e~lA~~llPlvll~~~~~~~~~~~r~~~~lAl~ 111 (616)
T PF10131_consen 77 IPETLAFALLPLVLLFLYRFIKKRKYRYWILLALS 111 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 67888888888888888888888876554444443
No 15
>PF03901 Glyco_transf_22: Alg9-like mannosyltransferase family; InterPro: IPR005599 Members of this family are glycosylphosphatidylinositol mannosyltransferase enzymes 2.4.1.- from EC [, ]. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis [, ]. In yeast the SMP3 (YOR149C) has been implemented in plasmid stability [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0006506 GPI anchor biosynthetic process, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.70 E-value=0.0016 Score=58.00 Aligned_cols=148 Identities=19% Similarity=0.297 Sum_probs=96.6
Q ss_pred HHHHHHHHHhhhhhccccccccChHHHHH-HHHHHHHHhCCcCCCCCCCCCCC--CCCceecCCccccHHHHHHHHHHHH
Q psy12509 15 AFKAAFSTRLFSVLRFESVIHEFDPYFNY-RTTKFLVEEGYYKFHNWFDDRAW--YPLGRIIGGTIYPGLMVTSAVLYHL 91 (194)
Q Consensus 15 i~l~a~~iRl~~~~~~~~~l~~~D~y~~~-r~a~~~~~~G~~~~~~~~d~~~~--~P~g~~~~~~~~P~l~~~~a~i~~~ 91 (194)
++++.+..|+....-....+ ..|+++++ +.+.++ -+|. + ..++.| .|.-|+. .+|.+.. ..++.
T Consensus 2 ~~~~ll~~R~~~a~~~~~~f-~pDE~fq~~E~ah~~-~~g~-g----~~tWE~~~~~~iRS~---~~p~i~~---~~~~~ 68 (418)
T PF03901_consen 2 LFLLLLAFRLLNALFPQTSF-HPDEYFQSLEPAHRL-VFGY-G----YLTWEWSPFPGIRSW---LFPLIFA---IPYKL 68 (418)
T ss_pred HHHHHHHHHHHHHHhccCCC-CCCcccccHHhhhhh-hcCc-c----chhhhhccCCCCCCh---HHHHHHH---HHHHH
Confidence 45677888888854333232 68998865 444233 3342 2 123334 2323322 5555544 33444
Q ss_pred HHhhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q psy12509 92 MWLLNI--TIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTY 169 (194)
Q Consensus 92 ~~~~g~--~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i 169 (194)
++..+. +.....+.|.+..++++++-...|...++..|+.+|..+.++.+.++....- +...-.++++..+.++++
T Consensus 69 ~~~~~~~~~~~~~~~~Rl~~~~~s~~~d~~~~~~~~~~~~~~~a~~~l~l~~~s~~~~~~--~~Rtlsns~e~~l~~~al 146 (418)
T PF03901_consen 69 LARLGLDSPWAVFYAPRLVLALLSALSDYYLYRLVKRLFGSSVALWALLLSLFSWFMFYY--SSRTLSNSFETILVLLAL 146 (418)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhHHHhhhHHHHh--hcccCccHHHHHHHHHHH
Confidence 443332 2236678999999999999999999999999998888888888888884431 223356889999999999
Q ss_pred HHHHHHHH
Q psy12509 170 YSWIKAVK 177 (194)
Q Consensus 170 ~~~~~a~~ 177 (194)
+.+.+..+
T Consensus 147 ~~~~~~~~ 154 (418)
T PF03901_consen 147 YLWLRSLS 154 (418)
T ss_pred HHHHHhhc
Confidence 99988553
No 16
>COG5305 Predicted membrane protein [Function unknown]
Probab=97.60 E-value=0.00033 Score=64.51 Aligned_cols=114 Identities=21% Similarity=0.263 Sum_probs=87.3
Q ss_pred CCCCCCCCCCceecC---------CccccHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy12509 60 WFDDRAWYPLGRIIG---------GTIYPGLMVTSAVLYHLMWLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDT 130 (194)
Q Consensus 60 ~~d~~~~~P~g~~~~---------~~~~P~l~~~~a~i~~~~~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~ 130 (194)
|.|...-+|.+.... .+..|++.++++=.+. ..+| +.+.+.|-+|++++++++..+|-++|+++++
T Consensus 70 ~l~~~~~~~~s~~~~~~v~~lll~~~~~~PLYfll~h~W~--~lF~---~s~~~~Rsls~L~~~~ai~~~y~l~r~l~~~ 144 (552)
T COG5305 70 WLDEFQSISASKTVIETVLSLLLELLVHPPLYFLLAHFWM--ALFG---NSLLASRSLSALLSALAIPLVYWLGRELFGS 144 (552)
T ss_pred hhhhcccCCCcccccchHHHHHhccCCCCCeeehHHHHHH--HHhc---hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555554221 2335566554333222 2355 5788999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCc
Q psy12509 131 GSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVKTGS 180 (194)
Q Consensus 131 ~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~~~~ 180 (194)
..|.+|+.++|++|.++..+.- .++-.+.+...++...+.++++|.+.
T Consensus 145 ~~a~la~~~~AisP~~i~~~qe--~R~y~L~~~~~lis~~~Ll~ai~~~~ 192 (552)
T COG5305 145 TTALLAAALMAISPFHIFYSQE--ARSYALAVATTLISATLLLRAIRLPT 192 (552)
T ss_pred hHHHHHHHHHccChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 9999999999999999987654 46788899999999999999999764
No 17
>PLN02816 mannosyltransferase
Probab=97.44 E-value=0.013 Score=54.22 Aligned_cols=143 Identities=15% Similarity=0.224 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhhhhccccccccChHHHHH-HHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHHHHHHHH
Q psy12509 13 PSAFKAAFSTRLFSVLRFESVIHEFDPYFNY-RTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTSAVLYHL 91 (194)
Q Consensus 13 ~~i~l~a~~iRl~~~~~~~~~l~~~D~y~~~-r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~a~i~~~ 91 (194)
..++.+.+..|+...+--..++ -.|.++.+ +.+.+++ .|. ++ -++.|-|.-|.. .+|.+. +.+|++
T Consensus 39 ~~~~~~~~~~R~~~al~~~t~f-~pDE~fQslE~ah~~v-fG~-G~----lTWEw~~~lRS~---~~Pll~---a~~~~~ 105 (546)
T PLN02816 39 RRIFLFCLAFRVVNALLIQTYF-NPDEHWQSLEVAHRTI-FGY-GY----MTWEWKRGIRSY---LHPMLF---AFLYKL 105 (546)
T ss_pred HHHHHHHHHHHHHHHHHccccC-CCCchhhhHHHHHHHH-hCC-cc----cceecCCCccch---hHHHHH---HHHHHH
Confidence 3456788889999865333344 48998765 4454544 364 22 334455533432 556644 446666
Q ss_pred HHhhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH---HHHHhccCCCchHHHHHHHHH
Q psy12509 92 MWLLNITI--DIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPG---YISRSVAGSYDNEAIAIFCML 166 (194)
Q Consensus 92 ~~~~g~~~--~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~---~~~rt~~G~~d~e~~~~~~~l 166 (194)
++..+.+. -+....|.+++++++++-.-.|.++++.+|+..|..+.++..+++. +..||. .++++..+.+
T Consensus 106 ~~~l~~~~~~~~~~~pRl~~al~sal~D~~l~kl~~~~~g~~~A~~~L~~sl~swf~~y~~sRTf-----SNslEt~Lt~ 180 (546)
T PLN02816 106 LQVTGLDTPYIMIKAPRLMQSIFSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTF-----SNCLETVLTI 180 (546)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhCccc-----hhHHHHHHHH
Confidence 66555431 2466789999999999999999999999998888777777777775 335654 4577777777
Q ss_pred HHHHHHH
Q psy12509 167 LTYYSWI 173 (194)
Q Consensus 167 l~i~~~~ 173 (194)
++++.+.
T Consensus 181 lAL~~w~ 187 (546)
T PLN02816 181 MGLYYWP 187 (546)
T ss_pred HHHHHhh
Confidence 7777664
No 18
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=97.29 E-value=0.019 Score=51.73 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=82.9
Q ss_pred ccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q psy12509 35 HEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTSAVLYHLMWLLNITIDIRNVCVFLAPFFSS 114 (194)
Q Consensus 35 ~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~a~i~~~~~~~g~~~~l~~~~~~~p~i~~~ 114 (194)
++.|-=.+.+..+.+. ||..+. ++.. |.+.-+..+-++.++.+.+|++. + +.+ ...++|+++-+
T Consensus 8 ~~~DlGif~Q~~~~~~-~g~~~~----~t~~----~~~~lg~HfsPil~ll~Ply~l~---P---s~~-tLli~Qal~la 71 (449)
T PF09852_consen 8 PSFDLGIFDQAIWSYA-HGRAPI----STIE----GQNHLGDHFSPILYLLAPLYRLF---P---SPL-TLLIVQALLLA 71 (449)
T ss_pred CchhHHHHHHHHHHHh-CCCCce----eccc----ccccccccchHHHHHHHHHHHHh---C---CHH-HHHHHHHHHHH
Confidence 4677766667777765 565332 2211 11111112345666677788874 3 233 47889999999
Q ss_pred HHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Q psy12509 115 LTTIVTYLLTKEVK-DTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVKTGSILWSALT 187 (194)
Q Consensus 115 l~ii~vy~l~~~l~-~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~~~~~~~~~~a 187 (194)
++++++|.++||.. +++.|++.++...++|....-+..+ +-.|++.+.+++++++ ++++++.+..+++
T Consensus 72 ~~~~pl~~lar~~~~~~~~a~~~~~~ylL~p~~~~~~~~d-FH~~~~avPll~~~~~----~~~~~r~~~~~~~ 140 (449)
T PF09852_consen 72 LGAIPLYRLARRRLLSRRLALLIALAYLLSPGLQGANLFD-FHPVAFAVPLLLWALY----ALERRRWRLFILW 140 (449)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhHHHHhhhhCC-CcHHHHHHHHHHHHHH----HHHhCcHHHHHHH
Confidence 99999999999998 7899999999999999977544322 2334444444444433 5555665444433
No 19
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=97.25 E-value=0.0079 Score=54.33 Aligned_cols=72 Identities=21% Similarity=0.205 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Q psy12509 102 RNVCVFLAPFFSSLTTIVTYLLTKEVK-DTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAV 176 (194)
Q Consensus 102 ~~~~~~~p~i~~~l~ii~vy~l~~~l~-~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~ 176 (194)
...+..+..++..++....|.++++.+ +++.+..|+++.+++|+-+.=| ++| +|+++.++....+++..+..
T Consensus 112 ~~~~~~vs~~~~~la~~~L~~l~~~~~~~~~~a~~a~ll~~~~PasiF~s-a~Y--sEslf~~lsf~gl~~~~~~~ 184 (443)
T PF04188_consen 112 LNSGILVSNVAFLLAAVALYRLTRRVFKSRKLALLAALLFIFSPASIFLS-APY--SESLFALLSFAGLYLLERGR 184 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHccHHHHhh-cCc--cHHHHHHHHHHHHHHHHhcc
Confidence 334556777888889999999999886 5688999999999999955433 455 89988887777777665533
No 20
>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0073 Score=52.61 Aligned_cols=111 Identities=20% Similarity=0.180 Sum_probs=74.6
Q ss_pred CCCceec---CCccccHHHH-HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHH
Q psy12509 67 YPLGRII---GGTIYPGLMV-TSAVLYHLMWLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKD-TGSGLVAAAMIS 141 (194)
Q Consensus 67 ~P~g~~~---~~~~~P~l~~-~~a~i~~~~~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~-~~~gl~Aa~l~a 141 (194)
||+-.++ -+++.|++-= .+|+..-+. .. .+ .-|+-..+.|.+.++.+|+.++++.+ ..+|++||++.|
T Consensus 122 YPdeeni~~Y~N~EHPpLgKyIiAl~ml~~---d~--Pl--~WRiPsiIe~~liliiv~~~~~ki~~~~la~~~aA~~~a 194 (438)
T COG4346 122 YPDEENIHKYYNTEHPPLGKYIIALGMLIV---DK--PL--YWRIPSIIEGALILIIVYFVAYKIARSPLAGLIAALLAA 194 (438)
T ss_pred CCchhhHHhhcCcCCCcHHHHHHHHHHHHh---cC--Cc--eeeccHHHhhhHHHHHHHHHHHHHhcCchHHHHHHHHHh
Confidence 7776655 2678888864 455432222 11 12 24666779999999999999999986 799999999999
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHh
Q psy12509 142 IVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVKTGSI-LWSALTALA 190 (194)
Q Consensus 142 ~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~~~~~-~~~~~ag~~ 190 (194)
.-|.. |.+-|-..-|...-||..+..||.. +++. +.++..|+|
T Consensus 195 lDp~l--~amg~VAMLDIhvaFFtaL~~~fl~----~~R~l~sgiAlGLA 238 (438)
T COG4346 195 LDPLL--RAMGGVAMLDIHVAFFTALFMYFLA----NDRPLWSGIALGLA 238 (438)
T ss_pred hCcHH--HHhcchhHHHHHHHHHHHHHHHHHh----cCCeehHHHHHHHH
Confidence 99984 4444544456666777776666543 3443 335555554
No 21
>COG5617 Predicted integral membrane protein [Function unknown]
Probab=97.00 E-value=0.019 Score=54.52 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhhhhhccccccccChHHHHHHHHHHH---HHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHHHHHH
Q psy12509 13 PSAFKAAFSTRLFSVLRFESVIHEFDPYFNYRTTKFL---VEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTSAVLY 89 (194)
Q Consensus 13 ~~i~l~a~~iRl~~~~~~~~~l~~~D~y~~~r~a~~~---~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~a~i~ 89 (194)
++++.++..+-.+..-..|.+..+-|.|-|.--+..+ ++.|.. .+.+++. ||= |.+.-+ .||++++++....
T Consensus 7 ~l~l~~~~v~~~~~~~~~~~yP~g~Dt~gHl~K~~~l~~~l~~G~w--y~~w~~~-WY~-G~pflr-YypPl~Yli~aal 81 (801)
T COG5617 7 VLFLVLISVISLIALYGNGSYPWGIDTYGHLFKAWFLYHSLKDGNW--YPPWCEY-WYN-GYPFLR-YYPPLSYLIGAAL 81 (801)
T ss_pred HHHHHHHHHHHHHHhccCCCCCccccccceeeehHHHHHHHhcCCC--CCCcchh-hhc-CCCcce-ecCcHHHHHHHHH
Confidence 3334444455544433445455578999997666433 444532 1222332 221 332211 6899998544422
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q psy12509 90 HLMWLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKD-TGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLT 168 (194)
Q Consensus 90 ~~~~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~-~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~ 168 (194)
.. ..|.+...+.++.++-. +....+|++.|.... ...++++|++.-++|.++.-+..+-.-..+..+-|..+.
T Consensus 82 ~~--l~~d~~~t~~v~~~la~----llG~~~~~~~r~~g~t~~ia~I~alL~ltsp~~l~vlf~EGniP~v~~i~f~pl~ 155 (801)
T COG5617 82 NF--LLGDVVTTYAVFLMLAF----LLGAGGWLLWRLRGRTGFIALISALLWLTSPENLKVLFIEGNIPRVLAIGFGPLA 155 (801)
T ss_pred HH--hhcChhHHHHHHHHHHH----HHHHHHHHHHHhhccccchHHHHHHHHHhChhheEEEEecCcccHHHHHHHHHHH
Confidence 22 24432233333333322 566677887776653 477899999999999988655544445667788888888
Q ss_pred HHHHHHHHHhCcH
Q psy12509 169 YYSWIKAVKTGSI 181 (194)
Q Consensus 169 i~~~~~a~~~~~~ 181 (194)
++++.+.++.++.
T Consensus 156 l~~l~~~~~~Gkk 168 (801)
T COG5617 156 LGLLERFLERGKK 168 (801)
T ss_pred HHHHHHHHHhCcc
Confidence 8888998865443
No 22
>PF04922 DIE2_ALG10: DIE2/ALG10 family; InterPro: IPR007006 Members of this entry are glycosyltransferases, belonging to the ALG10 family. The majority of the members are annotated as alpha-1,2 glucosyltransferas. The ALG10 protein from Saccharomyces cerevisiae (Baker's yeast) encodes the alpha-1,2 glucosyltransferase of the endoplasmic reticulum. This protein has been characterised in Rat as potassium channel regulator 1 [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane
Probab=96.85 E-value=0.04 Score=48.84 Aligned_cols=115 Identities=19% Similarity=0.298 Sum_probs=73.1
Q ss_pred ChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHHHH-HHHHHHhhccchhHHHHHHHHHHHHHH-
Q psy12509 37 FDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTSAV-LYHLMWLLNITIDIRNVCVFLAPFFSS- 114 (194)
Q Consensus 37 ~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~a~-i~~~~~~~g~~~~l~~~~~~~p~i~~~- 114 (194)
-|+-+|.+++|.+-+ |-+ ..+||. +. ..||+..++.. +.......+. +.....|..+.+.+.
T Consensus 9 mDEiFHipQaq~YC~-g~f---~~WDpK--------IT--TpPGLYlls~~~l~~~~~~~~~--~~~~~LR~~N~l~~~~ 72 (379)
T PF04922_consen 9 MDEIFHIPQAQAYCR-GRF---TEWDPK--------IT--TPPGLYLLSVAALFPGSWFFGC--SSLSVLRSTNLLFALV 72 (379)
T ss_pred ccchhhhHHHHHHHh-chh---hhhCCc--------cC--CCchHHHHHHHHHhhHHHhhcc--cchHHHHHHHHHHHHH
Confidence 489999999999877 432 234764 21 45888876555 2222112232 334448888988877
Q ss_pred HHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q psy12509 115 LTTIVTYLLTKEVKD--TGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTY 169 (194)
Q Consensus 115 l~ii~vy~l~~~l~~--~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i 169 (194)
.....++...+...+ +......|+-.+..|..+.=+ +-+=||+.++++.+++.
T Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~~~a~~ialfPllfFFs--fLYYTDv~St~~VL~~y 127 (379)
T PF04922_consen 73 VLPWLIYRILRFLNPRRSRKAILSALNIALFPLLFFFS--FLYYTDVWSTTFVLLMY 127 (379)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHhh--HHHHhcHHHHHHHHHHH
Confidence 333334444443321 245678889999999966544 45679999999988776
No 23
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=96.46 E-value=0.26 Score=43.29 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=62.5
Q ss_pred ccHHHHH-HHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCC
Q psy12509 78 YPGLMVT-SAVLYHLMWLLNITI-DIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSY 155 (194)
Q Consensus 78 ~P~l~~~-~a~i~~~~~~~g~~~-~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~ 155 (194)
||++.++ .++-.++-+.++.+. .....+|+...++.++.+.......++ +| ...++.+..|..++- ++.+
T Consensus 95 y~p~~Ylp~alGi~ig~ll~l~~~~~~~l~Rl~nll~~~~l~~~Ai~~~p~--~k----~l~~~i~l~Pm~~~~--~aS~ 166 (389)
T PF09913_consen 95 YPPLYYLPQALGIWIGRLLGLSVLVMYYLGRLFNLLLYALLVYLAIKLAPR--GK----WLLALIALLPMTLFQ--AASV 166 (389)
T ss_pred CCcHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcch--hH----HHHHHHHHHHHHHHH--HHhc
Confidence 7888875 444344444455432 356789999998877766655555543 23 226667788986653 3456
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCc
Q psy12509 156 DNEAIAIFCMLLTYYSWIKAVKTGS 180 (194)
Q Consensus 156 d~e~~~~~~~ll~i~~~~~a~~~~~ 180 (194)
..|++......+.+..+++..++++
T Consensus 167 s~D~~~~~~~~l~~a~~l~~~~~~~ 191 (389)
T PF09913_consen 167 SYDGLIIALAFLFIALLLRLYRKKK 191 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccC
Confidence 7888888888888888888655444
No 24
>COG3463 Predicted membrane protein [Function unknown]
Probab=95.63 E-value=0.42 Score=42.96 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=82.1
Q ss_pred HHHHHHhhhhhcccc-ccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceec--CCccccHHHHHHHHHHHHHHh
Q psy12509 18 AAFSTRLFSVLRFES-VIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRII--GGTIYPGLMVTSAVLYHLMWL 94 (194)
Q Consensus 18 ~a~~iRl~~~~~~~~-~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~--~~~~~P~l~~~~a~i~~~~~~ 94 (194)
.+...-.+.+.+|-. -.++.|-=.+....... .||.+=| + -|+++.. +....|- ..++.-+|++
T Consensus 17 ~s~i~~~~~v~ky~sf~~ta~DLGI~sq~l~~~-~~Gk~~Y----~----t~~~~~~~f~vhfqpi-lfLlyP~Y~l--- 83 (458)
T COG3463 17 YSVIFSYYSVVKYWSFNSTALDLGIFSQSLYTT-SHGKLFY----N----TVEFQLTHFGVHFQPI-LFLLYPFYKL--- 83 (458)
T ss_pred HHHHHHHHHHHHhhhhcceeechHHHHHHHHHH-hCCeeec----c----chhhhcccceeehhhH-HHHHHHHHHh---
Confidence 344444444555432 23467776655554444 4575211 1 1333311 1112333 3334445554
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhccCCCch--HHHHHHHHHHHHHH
Q psy12509 95 LNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKD-TGSGLVAAAMISIVPGYISRSVAGSYDN--EAIAIFCMLLTYYS 171 (194)
Q Consensus 95 ~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~-~~~gl~Aa~l~a~~p~~~~rt~~G~~d~--e~~~~~~~ll~i~~ 171 (194)
.. +.+ +..++|.++=++++.++|+++||..+ ++.|++-+++..++|.... ...+|= +++++.+.+++.|+
T Consensus 84 ~P---sp~-~Lll~Q~i~ials~~p~y~lA~eil~~E~~al~isilYll~p~i~g---i~~FDFH~m~~avp~~~~a~~f 156 (458)
T COG3463 84 FP---SPE-TLLLIQAIAIALSSLPIYLLAKEILNGEKEALAISILYLLNPYIEG---INLFDFHPMAFAVPLFLLAYYF 156 (458)
T ss_pred CC---cHH-HHHHHHHHHHHHhHHHHHHHHHHHhcccHHHHHHHHHHHhchhccC---chhhhcchHHHHHHHHHHHHHH
Confidence 32 344 47889999999999999999999987 8999999999999999553 233454 55566666666666
Q ss_pred HHH
Q psy12509 172 WIK 174 (194)
Q Consensus 172 ~~~ 174 (194)
+.|
T Consensus 157 ~~r 159 (458)
T COG3463 157 LKR 159 (458)
T ss_pred HHh
Confidence 544
No 25
>KOG2647|consensus
Probab=93.27 E-value=0.53 Score=42.17 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh
Q psy12509 104 VCVFLAPFFSSLTTIVTYLLTKEVKDT-GSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVKT 178 (194)
Q Consensus 104 ~~~~~p~i~~~l~ii~vy~l~~~l~~~-~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~~ 178 (194)
++..+..++-.++....|-++|..+++ +.+.-|+++.++.|+-+.-| +|| +|.+...+.+..++...+....
T Consensus 127 ~~~~vn~~~f~la~~~Lyql~~~~~~~~k~s~~a~liFcfnPAsIF~t-s~Y--SEsLfa~~s~~Gi~~~~~~~~~ 199 (444)
T KOG2647|consen 127 SAVLVNIFFFMLAAVALYQLTRIILHDPKISFYAALLFCFNPASIFLT-AGY--SESLFALFSFLGILFLEKGRQF 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhHHhhhhheeEecchHhhhh-HHh--hHHHHHHHHHHHHHHHhcCCcc
Confidence 566777888889999999999999865 89999999999999977655 455 7898888888888877765433
No 26
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=92.29 E-value=0.63 Score=41.60 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=70.7
Q ss_pred cccHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHhccCCC
Q psy12509 77 IYPGLMVTSAVLYHLMWLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDT-GSGLVAAAMISIVPGYISRSVAGSY 155 (194)
Q Consensus 77 ~~P~l~~~~a~i~~~~~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~-~~gl~Aa~l~a~~p~~~~rt~~G~~ 155 (194)
.+|.+++.+.++-+++.. ...+.+..+.+.+..+.+...+|.+.|+.++. +.+..|..+...+|..+.- +++|-
T Consensus 95 ~~p~~~y~i~ii~~L~~~----~~~~l~~~l~s~~~~~~~ay~lY~~tk~~y~~~~~a~fa~i~~~~~P~~i~~-s~iw~ 169 (420)
T COG5542 95 YFPLYLYWIRIINKLLSS----LYFILAIKLFSNIADFVAAYFLYKITKLRYGLGSMARFATILVILSPSVIYN-SAIWG 169 (420)
T ss_pred cCchHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhheEEEEEeccHHHhh-hhHHh
Confidence 568888888876666542 13556678888899999999999999999985 6666777777788885543 35565
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy12509 156 DNEAIAIFCMLLTYYSWI 173 (194)
Q Consensus 156 d~e~~~~~~~ll~i~~~~ 173 (194)
.+|.+.+++..+.+|++.
T Consensus 170 ~teSlf~ll~~l~iyf~~ 187 (420)
T COG5542 170 QTESLFTLLSILAIYFFS 187 (420)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 799999999988888764
No 27
>PF11847 DUF3367: Domain of unknown function (DUF3367); InterPro: IPR021798 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 667 to 694 amino acids in length.
Probab=88.86 E-value=12 Score=35.89 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=72.1
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q psy12509 91 LMWLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEV--KDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLT 168 (194)
Q Consensus 91 ~~~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l--~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~ 168 (194)
+.+.+|.+..+. -|+.=.++=.+.-.-++.+++++ ..+...++||+.+|++|-.+.. .|.+-.|.+-..+....
T Consensus 64 l~~~lglP~Wi~--QRLWwallL~vaf~G~~rLa~~L~igs~~~r~~Aa~~YaLsPr~Ltt--lg~iSse~lP~al~PWv 139 (680)
T PF11847_consen 64 LGDLLGLPDWIT--QRLWWALLLTVAFWGALRLARALGIGSPASRVLAAVAYALSPRVLTT--LGAISSETLPMALAPWV 139 (680)
T ss_pred HhhhccCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhChHHHHH--HHHHHHHHHHHHHhhHH
Confidence 444566553333 24444444455667788899998 4567789999999999997764 67777899999999999
Q ss_pred HHHHHHHHHh--CcHHHHHHHHHhhhcC
Q psy12509 169 YYSWIKAVKT--GSILWSALTALAYFYM 194 (194)
Q Consensus 169 i~~~~~a~~~--~~~~~~~~ag~~~~~~ 194 (194)
+.-++++.+. ...+.++.++++...|
T Consensus 140 LlPlv~~~r~~~~~rr~aa~salaV~~m 167 (680)
T PF11847_consen 140 LLPLVRALRGRGSPRRAAARSALAVALM 167 (680)
T ss_pred HHHHHHhhccCcchhHHHHHHHHHHHHH
Confidence 9999999986 4457777777765543
No 28
>PF10060 DUF2298: Uncharacterized membrane protein (DUF2298); InterPro: IPR018746 Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modelled by the signatures in this entry represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present. The function is unknown.
Probab=85.04 E-value=31 Score=31.62 Aligned_cols=86 Identities=13% Similarity=0.116 Sum_probs=55.7
Q ss_pred cccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHH-HHHHHHHHHHhhccchhHHHHHHHHHH
Q psy12509 32 SVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMV-TSAVLYHLMWLLNITIDIRNVCVFLAP 110 (194)
Q Consensus 32 ~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~-~~a~i~~~~~~~g~~~~l~~~~~~~p~ 110 (194)
+...+.|-+-++-..+-+.+... .++.|| |++ |..+ .|-..-+ +.+..-+ .+|. ..+.+.-+..+
T Consensus 74 P~i~g~EK~MD~afl~ai~rs~~---lPP~Dp--WfA-G~~i---nYYY~G~~l~a~l~~---LtG~--~~~vayNLala 139 (473)
T PF10060_consen 74 PDIWGGEKFMDFAFLNAILRSPT---LPPYDP--WFA-GGPI---NYYYFGHVLMAALAK---LTGV--PPEVAYNLALA 139 (473)
T ss_pred CccccccchhhHHHHHHHHcCCC---CCCCCC--ccC-CCcc---CcccHHHHHHHHHHH---HHCC--CHHHHHHHHHH
Confidence 33345556666666666666554 346788 566 4444 3444444 4555344 4565 35566678888
Q ss_pred HHHHHHHHHHHHHHHHhcCch
Q psy12509 111 FFSSLTTIVTYLLTKEVKDTG 131 (194)
Q Consensus 111 i~~~l~ii~vy~l~~~l~~~~ 131 (194)
.+.++++...|-+++++.+++
T Consensus 140 ~~~al~~~~a~~l~~~l~~~~ 160 (473)
T PF10060_consen 140 TLFALAFTGAFGLAYNLLARR 160 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998665
No 29
>COG4906 Predicted membrane protein [Function unknown]
Probab=83.76 E-value=6.9 Score=36.25 Aligned_cols=77 Identities=13% Similarity=0.259 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH
Q psy12509 99 IDIRNVCVFLAPFFSSLTTIVTYLLTKEVK-DTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVK 177 (194)
Q Consensus 99 ~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~-~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~ 177 (194)
+....+.++.=|++.++.-+++|.+..|+. |+..|..+.++..+--.++.- ..+..+....++++.++ .+....-++
T Consensus 256 ~~~vyiFKiiYpfifslvPv~vy~iser~l~n~~~~flsvl~Fif~f~F~~e-~lalaRq~Iaelflal~-~~v~~~~~~ 333 (696)
T COG4906 256 VPEVYIFKIIYPFIFSLVPVPVYLISERILKNSDYGFLSVLLFIFQFSFIYE-ILALARQLIAELFLALA-VMVLTGDMR 333 (696)
T ss_pred CchhhHHHHHHhHHHhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHhhhh
Confidence 355667888889999999999999999986 568899999888665555432 34454444545555554 444444444
No 30
>TIGR03459 crt_membr carotene biosynthesis associated membrane protein. This model represents a family of hydrophobic and presumed membrane proteins. The genes encoding these proteins are syntenically associated with (found proximal to) genes of carotene biosynthesis ususally including phytoene synthase (crtB), phytoene dehydrogenase (crtI) and geranylgeranyl pyrophosphate synthase (ispA).
Probab=70.47 E-value=89 Score=28.76 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=71.0
Q ss_pred cccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCce------ec------CCccccHHHHH-HHHHHHHHHhhccc
Q psy12509 32 SVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGR------II------GGTIYPGLMVT-SAVLYHLMWLLNIT 98 (194)
Q Consensus 32 ~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~------~~------~~~~~P~l~~~-~a~i~~~~~~~g~~ 98 (194)
.++.+-|-|.|..+-|.. .+|.-|| ..-|... .. .++-|+++... ...+..+ .|.+
T Consensus 93 ~PlfSrDvYsYlaqG~l~-~~G~dPY-------~~gP~~~~~~~~~~v~~~W~~t~aPYGPl~l~i~~~v~~l---~g~~ 161 (470)
T TIGR03459 93 VPMMSRDVYSYLMQGALL-RDGFDPY-------TVGAAANPGPLLDEVSPDWRNTTTPYGPLHLLVGQAITTV---TGDN 161 (470)
T ss_pred CCcccHHHHHHHHHHHHH-HcCCCcc-------ccCCccCCchHhhhcCchhccCCCCCChHHHHHHHHHHHH---hCCC
Confidence 344578999999998886 5686443 3323221 11 12346777653 3333333 3432
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH
Q psy12509 99 IDI-RNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIK 174 (194)
Q Consensus 99 ~~l-~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~ 174 (194)
... .-..|++-.+-=.+++..+-.++|++..+.. .|.-+.+.-|-.+.. ..|-.-+|.+.+.+++..+++..+
T Consensus 162 i~~~v~~~Rl~~l~g~~l~~w~~~rLar~~g~~~~--~AlWL~~~NPLviih-lvgg~HnealM~gl~l~gl~~~~r 235 (470)
T TIGR03459 162 VTAGTLAFKLLSLPGLAVMVWAVPKLATHLGGNPT--VALWLGVLNPLVVIH-LIGGMHNEMLMVGLVSAGILLALK 235 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHcCchhhhh-hhcchhHHHHHHHHHHHHHHHHHh
Confidence 211 1223333333333445555667777764332 223334456776654 456678899999999999887764
No 31
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=64.23 E-value=1.4e+02 Score=28.87 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c--hHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHH
Q psy12509 100 DIRNVCVFLAPFFSSLTTIVTYLLTKEVKD-T--GSGLVAAAMISIVPGYISRSV-AGSYDNEAIAIFCMLLTYYSWIKA 175 (194)
Q Consensus 100 ~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~-~--~~gl~Aa~l~a~~p~~~~rt~-~G~~d~e~~~~~~~ll~i~~~~~a 175 (194)
.+..+..++..+=-.++.+.+|+..|+... + .+++++|++.|++-..+.... .-+ .-.+.++.+.++..-|.
T Consensus 87 ~~~~~~~~~~~lk~~lag~~~~~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~~~~~f----ld~~i~lPL~llgie~~ 162 (843)
T PF09586_consen 87 QMPYAILLLIILKIGLAGLFFYLYLRKFKKSRSDWAALIGSLLYAFSGYVIYYSFNIMF----LDAMILLPLLLLGIERL 162 (843)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHH
Confidence 355556666666667788888888888875 5 889999999999977554321 111 22456667778888999
Q ss_pred HHhCcH
Q psy12509 176 VKTGSI 181 (194)
Q Consensus 176 ~~~~~~ 181 (194)
+|++|.
T Consensus 163 ~~~~k~ 168 (843)
T PF09586_consen 163 LKEKKW 168 (843)
T ss_pred HhcCCc
Confidence 999885
No 32
>PLN02841 GPI mannosyltransferase
Probab=63.71 E-value=1.2e+02 Score=27.71 Aligned_cols=135 Identities=17% Similarity=0.079 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhhhhhcccc-------ccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHHH
Q psy12509 14 SAFKAAFSTRLFSVLRFES-------VIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTSA 86 (194)
Q Consensus 14 ~i~l~a~~iRl~~~~~~~~-------~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~a 86 (194)
.++++++++|+.-.. +|. .-...++|.-.+-+-.++++|..|| | +.+. -|+|+.+.+.
T Consensus 10 ~vll~a~~lRl~L~~-yg~~~D~~~eVsytdidY~vftDga~lv~~G~SPY----~--------r~TY--rytPLLa~Ll 74 (440)
T PLN02841 10 SLLLASALLRVALIV-YGEWQDAHMEVRYTDVDYLVFSDAAALVASGKSPF----A--------RDTY--RYSPLLALLL 74 (440)
T ss_pred HHHHHHHHHHHHHHH-HHHHhccCccccccccchHHHHHHHHHHHcCCCCC----C--------CCCC--CcChHHHHHH
Confidence 355788888988743 331 1235667776777778888886433 2 1111 2344443211
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q psy12509 87 VLYHLMWLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKD-TGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCM 165 (194)
Q Consensus 87 ~i~~~~~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~-~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ 165 (194)
. -+... ....+..+=++.-.++...++.+.|+... +......+.+..+=|..+.-+..| .+|++.-++.
T Consensus 75 l----Pn~~~----~~~fgk~LF~l~Dll~a~ll~~il~~~~~~~~~~~~~a~~wL~NPlti~istrG--Sse~i~~~lv 144 (440)
T PLN02841 75 V----PNSLL----HRSWGKFLFSAADLLVGLFIHTILRLRGVPEKVCTWSVMVWLFNPFTFTIGTRG--NCEPIVCAVI 144 (440)
T ss_pred c----chhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHhCcHHHHHhccc--chHHHHHHHH
Confidence 0 00000 02234555555556666677777664421 233344466667888888777776 4788888887
Q ss_pred HHHHHHHH
Q psy12509 166 LLTYYSWI 173 (194)
Q Consensus 166 ll~i~~~~ 173 (194)
+.++|+..
T Consensus 145 l~~L~~l~ 152 (440)
T PLN02841 145 LWILICLM 152 (440)
T ss_pred HHHHHHHH
Confidence 77777654
No 33
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=56.86 E-value=97 Score=24.49 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcCch----HHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Q psy12509 114 SLTTIVTYLLTKEVKDTG----SGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVKTGSILWSALTAL 189 (194)
Q Consensus 114 ~l~ii~vy~l~~~l~~~~----~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~~~~~~~~~~ag~ 189 (194)
...+..++...|+...++ ....+..+.+..|. ..-...| ..|.+..++....++... |++...-+++-|+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~g--q~~~l~~~l~~~a~~~~~---r~r~~~agv~lgl 105 (241)
T PF09594_consen 32 AALALAVRLLLRRLGRRKPPGRALLLALLLLAFPPV-LSALGLG--QFDLLVAALLLLALLALR---RGRPWLAGVLLGL 105 (241)
T ss_pred HHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHH-HHHHHhc--cHHHHHHHHHHHHHHHHH---cCCChHHHHHHHH
Confidence 334444667777766432 22333345555555 2222233 456666555555554433 3444445555555
Q ss_pred h
Q psy12509 190 A 190 (194)
Q Consensus 190 ~ 190 (194)
+
T Consensus 106 a 106 (241)
T PF09594_consen 106 A 106 (241)
T ss_pred H
Confidence 4
No 34
>KOG3893|consensus
Probab=50.07 E-value=1.8e+02 Score=25.68 Aligned_cols=72 Identities=24% Similarity=0.273 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Q psy12509 102 RNVCVFLAPFFSSLTTIVTYLLTK-EVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKA 175 (194)
Q Consensus 102 ~~~~~~~p~i~~~l~ii~vy~l~~-~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a 175 (194)
..+++++-.++-.++..++|.+.. |--+++-+.+-+.+--.=|....-|.=| +.|+..-++.++.+|+.-|.
T Consensus 95 p~~GK~Lf~~~Dll~a~L~~kLl~~~~i~~~~a~~~~~fWLlNPl~aiIStRG--Naesi~~~lvi~~lyllqK~ 167 (405)
T KOG3893|consen 95 PAWGKLLFAIFDLLIATLIYKLLHMRSISRKQALIYASFWLLNPLTAIISTRG--NAESIVAFLVILTLYLLQKS 167 (405)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHhhhhhhcCchheeeecCC--chHHHHHHHHHHHHHHHHHh
Confidence 457788888888888888888876 4445555555555554566644333333 57888888888888887653
No 35
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=49.29 E-value=99 Score=22.38 Aligned_cols=35 Identities=14% Similarity=0.374 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHH
Q psy12509 111 FFSSLTTIVTYLLTKEVKDT-GSGLVAAAMISIVPG 145 (194)
Q Consensus 111 i~~~l~ii~vy~l~~~l~~~-~~gl~Aa~l~a~~p~ 145 (194)
++|.+.+...+.+++++.++ ..|++||+=.....+
T Consensus 6 ~~GG~av~~~~ii~~~~~~k~~GGifAA~PaV~las 41 (108)
T PF11345_consen 6 LLGGLAVVAAYIISRKLPPKSFGGIFAAFPAVFLAS 41 (108)
T ss_pred eeccHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHH
Confidence 46778888999999998887 788988875555444
No 36
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=49.02 E-value=2.1e+02 Score=27.48 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=68.9
Q ss_pred CCCCCCCCCceecC--CccccHHHHHHHHHHHHHHhhccchhH-HHHHHHHH--HHHHHHHHHHHHHHHHHhcCchH-HH
Q psy12509 61 FDDRAWYPLGRIIG--GTIYPGLMVTSAVLYHLMWLLNITIDI-RNVCVFLA--PFFSSLTTIVTYLLTKEVKDTGS-GL 134 (194)
Q Consensus 61 ~d~~~~~P~g~~~~--~~~~P~l~~~~a~i~~~~~~~g~~~~l-~~~~~~~p--~i~~~l~ii~vy~l~~~l~~~~~-gl 134 (194)
+|..+=||..-++- --.||-+. ++.+|++++..... + +-+-.++- -+++.+.+...|+.+-.+.|.+. |+
T Consensus 63 ~dn~te~p~~IN~l~RfnlypEvi--l~~~yr~~~~~~~~--~~~P~yFYi~~Vf~l~g~~v~~Lf~~~~~lSgS~l~Gl 138 (642)
T PF10034_consen 63 NDNRTEYPRTINALQRFNLYPEVI--LAVLYRIFPSIQNF--LGEPVYFYIYSVFGLQGLYVTALFLYGWYLSGSWLGGL 138 (642)
T ss_pred cCCCccchhhhhHHHHhhhhHHHH--HHHHHHHHHHhhhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 46566667553331 12577655 77889988732211 1 12223333 35667888888999999988643 45
Q ss_pred HHHHHHHHHHHHHHHhccCCCc-----hHHHHHHHHHHHHHHHHHHHHh
Q psy12509 135 VAAAMISIVPGYISRSVAGSYD-----NEAIAIFCMLLTYYSWIKAVKT 178 (194)
Q Consensus 135 ~Aa~l~a~~p~~~~rt~~G~~d-----~e~~~~~~~ll~i~~~~~a~~~ 178 (194)
++++... +.|.-...++ -|.++..|+.+=+++....+|+
T Consensus 139 l~v~~f~-----fNh~e~TRV~~tpPLREnfA~Pf~~lQ~~~lt~~Lr~ 182 (642)
T PF10034_consen 139 LTVLWFF-----FNHGETTRVMWTPPLRENFALPFFWLQMAALTYILRS 182 (642)
T ss_pred HHHHHHH-----HccccceeeeecCcchhhcccHHHHHHHHHHHHHhcc
Confidence 5554443 5555555554 4999999999888888888888
No 37
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=47.87 E-value=14 Score=34.25 Aligned_cols=132 Identities=20% Similarity=0.295 Sum_probs=58.4
Q ss_pred cccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q psy12509 34 IHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTSAVLYHLMWLLNITIDIRNVCVFLAPFFS 113 (194)
Q Consensus 34 l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~a~i~~~~~~~g~~~~l~~~~~~~p~i~~ 113 (194)
.+++|||.++.+.+-...+. +| ... ..|++|--+-...||++.....+ ... .. .....-+.++..
T Consensus 114 vh~~~P~~r~~ms~af~y~~-yP---v~~--~~y~~~~~v~~~~Y~~L~~ll~l--P~~--~e-----f~~~f~V~AF~~ 178 (536)
T COG5650 114 VHGFDPYVRYNMSKAFRYMH-YP---VLG--TPYQTGGYVIYFSYPGLSALLFL--PVL--FE-----FNPFFKVLAFLL 178 (536)
T ss_pred ecCCCccchhhhhhhheeEe-ec---ccc--CcccccceEEEEEecchhhhccC--ccc--cc-----cchhhhHHHHHH
Confidence 36789998888876543332 22 111 23344432323367887753221 000 11 111223344333
Q ss_pred HHHHHHHHHHH-HHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh
Q psy12509 114 SLTTIVTYLLT-KEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVKTGSILWSALTALA 190 (194)
Q Consensus 114 ~l~ii~vy~l~-~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~~~~~~~~~~ag~~ 190 (194)
++..+.+.... +++.+. +.+.+.+.+++| ++.=+..+ .-|....+|...+... |.|-...+++-|++
T Consensus 179 A~~~l~~i~~~r~gl~~~--~~~~valv~as~-~v~f~v~~--~~DtI~~ffla~a~v~-----r~rP~lAGvl~Gls 246 (536)
T COG5650 179 ALIWLLVIYFIRKGLAGS--RVLDVALVAASP-LVGFAVFT--VFDTIWAFFLAAALVC-----RGRPKLAGVLIGLS 246 (536)
T ss_pred HHHHHHHHHHHHhccccc--ceeeeeeeeccc-eEEEEEec--chhHHHHHHHHHHHHh-----cCCchHHHHHHHHH
Confidence 33444444444 444443 224445555666 33222222 2345555555554443 33334444444443
No 38
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=47.45 E-value=60 Score=20.52 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHH
Q psy12509 163 FCMLLTYYSWIKAVKTGSILWSALTAL 189 (194)
Q Consensus 163 ~~~ll~i~~~~~a~~~~~~~~~~~ag~ 189 (194)
...+++.+-.++++|++|..-.+.+++
T Consensus 4 Lvtlla~~g~~rslK~KN~l~i~F~~~ 30 (52)
T PF10958_consen 4 LVTLLAAFGVLRSLKNKNFLGIGFALV 30 (52)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345677888899999998654444433
No 39
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose.
Probab=40.90 E-value=87 Score=29.21 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhhh
Q psy12509 116 TTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVKTGSILWSALTALAYF 192 (194)
Q Consensus 116 ~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~~~~~~~~~~ag~~~~ 192 (194)
....+|..+|+--.++++ +-++.+...+++ .| -||+++-.|+..+-.++. .+++++|+++.
T Consensus 290 aalAmy~~A~~enrk~v~--~ll~saaltsfl----tG--ITEPiEFtFlFvAP~Ly~--------vHa~L~Gl~~~ 350 (524)
T TIGR02005 290 IALAMYATAPPENRKKVA--GLLIPATLTAVV----VG--ITEPLEFTFLFIAPYLFV--------VHAVLAASMAT 350 (524)
T ss_pred HHHHHHHhcCHHHHHHHH--HHHHHHHHHHHH----hc--CCchHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 346788888774333332 122222223333 24 489999888888755553 35777777764
No 40
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=37.99 E-value=97 Score=28.88 Aligned_cols=62 Identities=10% Similarity=0.273 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhhhc
Q psy12509 116 TTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVKTGSILWSALTALAYFY 193 (194)
Q Consensus 116 ~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~~~~~~~~~~ag~~~~~ 193 (194)
....+|..+|+--.++++ +-++.+...+++ .| -||+++..|+..+=.++. .+++++|+++..
T Consensus 305 aalAmy~~A~~enrk~v~--~~l~~aa~ts~l----tG--ITEPiEF~FlFvaP~L~~--------vha~l~g~~~~~ 366 (530)
T PRK10110 305 AALAMYHCARPENRHKIK--GLLISGVIACVV----GG--TTEPLEFLFLFVAPVLYV--------IHALLTGLGFTV 366 (530)
T ss_pred HHHHHHHhcCHHHHHHHH--HHHHHHHHHHHH----hc--CCcHHHHHHHHHhHHHHH--------HHHHHHHHHHHH
Confidence 346778888774333332 222223333333 24 489999888888755543 367788877653
No 41
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.60 E-value=90 Score=19.97 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q psy12509 105 CVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPG 145 (194)
Q Consensus 105 ~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~ 145 (194)
....=.+.++.+.+..+++.|+ +.+.-+++|++....++
T Consensus 5 ~l~~Y~ig~~is~~iT~flskD--s~~iRllsa~lIG~TWP 43 (55)
T PF10753_consen 5 ILIFYAIGAVISALITFFLSKD--SLRIRLLSAILIGLTWP 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHccCc
Confidence 3444456677888899999999 66777888888765544
No 42
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=37.16 E-value=99 Score=29.02 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhhhc
Q psy12509 116 TTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVKTGSILWSALTALAYFY 193 (194)
Q Consensus 116 ~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~~~~~~~~~~ag~~~~~ 193 (194)
....+|..+|+--.++++ +-++.|...+++ .| -||+++-.|+..+=.++. .+++++|+++..
T Consensus 320 aalAmy~~A~~enrk~v~--~ll~saaltsfl----tG--ITEPiEFtFlFvAP~Lyv--------vHa~l~G~s~~i 381 (548)
T TIGR02003 320 IAFAMFRNVDADKKAKYK--MMFISAAAAVFL----TG--VTEPIEFLFMFAAMPLYI--------VYAITQGAAFAL 381 (548)
T ss_pred HHHHHHHhCCHHHHHHHH--HHHHHHHHHHHH----hc--CCchHHHHHHHHhHHHHH--------HHHHHHHHHHHH
Confidence 446788888874333332 112222223333 24 489999888888755553 367788877653
No 43
>PRK09272 hypothetical protein; Provisional
Probab=36.59 E-value=1.7e+02 Score=21.37 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q psy12509 109 APFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYIS 148 (194)
Q Consensus 109 p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~ 148 (194)
=.+.+++.|+.+--++||. ++.+|++||+=....+..+.
T Consensus 6 K~lisa~iIv~iSeiAkR~-p~~ggliAaLPLvs~l~liw 44 (109)
T PRK09272 6 KYLISALIIVAITEIAKRS-PTLGGLIAALPLVSLLSLIW 44 (109)
T ss_pred HHHHHHHHHHHHHHHHHhc-chHHHHHHHhHHHHHHHHHH
Confidence 3467788888999999997 88899999998877777554
No 44
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=36.25 E-value=1.1e+02 Score=29.32 Aligned_cols=62 Identities=18% Similarity=0.393 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhhhc
Q psy12509 116 TTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVKTGSILWSALTALAYFY 193 (194)
Q Consensus 116 ~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~~~~~~~~~~ag~~~~~ 193 (194)
....+|..+|+--.++++ +-++.+...+++. | -||+++..|+..+=.+|. .+++++|+++..
T Consensus 244 aalAmy~~A~~e~rk~v~--~~l~~aaltsflt----G--ITEPiEF~FlFvAP~Ly~--------vHa~l~G~s~~~ 305 (648)
T PRK10255 244 AALAMYFAAPKERRPMVG--GMLLSVAVTAFLT----G--VTEPLEFLFMFLAPLLYL--------LHALLTGISLFV 305 (648)
T ss_pred HHHHHHHhcCHHHHHHHH--HHHHHHHHHHHHh----c--CCcHHHHHHHHHhHHHHH--------HHHHHHHHHHHH
Confidence 346778888774333332 2222233333332 3 489999888888755554 367888887753
No 45
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=35.33 E-value=1.2e+02 Score=28.16 Aligned_cols=62 Identities=13% Similarity=0.289 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhhhc
Q psy12509 116 TTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAVKTGSILWSALTALAYFY 193 (194)
Q Consensus 116 ~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~~~a~~~~~~~~~~~ag~~~~~ 193 (194)
....+|..+|+--.+++ -+-++.+...+++ .| -||+++..|+..+-.++. .+++++|+++..
T Consensus 296 aalAmy~~a~~e~rk~v--~~~l~~aalts~l----tG--ITEPiEF~FlFvaP~Ly~--------vha~l~G~~~~~ 357 (517)
T TIGR02004 296 AALAMYHCARPANRHKI--KALLLSGVVACAV----GG--ITEPLEFLFLFVAPLLYL--------VHAILTGLGFMV 357 (517)
T ss_pred HHHHHHHhcCHHHHHHH--HHHHHHHHHHHHH----hc--CchHHHHHHHHHhHHHHH--------HHHHHHHHHHHH
Confidence 34677888877432232 2222223333333 24 489999888888755554 367788877653
No 46
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=35.25 E-value=2e+02 Score=21.77 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=55.1
Q ss_pred cccHHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCchHHHHHHHHHHHHHHHHHHh
Q psy12509 77 IYPGLM--VTSAVLYHLMWLLNITIDIRNVCVFLAPFFSSLTTIVTY----LLTKEVKDTGSGLVAAAMISIVPGYISRS 150 (194)
Q Consensus 77 ~~P~l~--~~~a~i~~~~~~~g~~~~l~~~~~~~p~i~~~l~ii~vy----~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt 150 (194)
..|+.+ +...++|.+...+. +.-........++..+..+.=| +-+||...++.|..+|.+.++.-.++.
T Consensus 5 ~lPG~~l~~~g~l~~~~~~g~~---~~~~~~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~ga~iG~IvG~f~~-- 79 (140)
T PF04306_consen 5 VLPGTPLIWLGILLYAFFTGFS---EFGWWFLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWGAIIGGIVGFFVL-- 79 (140)
T ss_pred cCChHHHHHHHHHHHHHHcCCC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--
Confidence 345444 35667777764332 1122223333344444444333 456777778888888888876666552
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHhCcHHHH
Q psy12509 151 VAGSYDNEAIAIFCMLLTYYSWIKAVKTGSILWS 184 (194)
Q Consensus 151 ~~G~~d~e~~~~~~~ll~i~~~~~a~~~~~~~~~ 184 (194)
.++.+++-.+.-.+..+..++++.+-+
T Consensus 80 -------~p~G~iiG~~~Ga~l~El~~~~~~~~A 106 (140)
T PF04306_consen 80 -------PPLGLIIGPFLGAFLGELLRGKDFRRA 106 (140)
T ss_pred -------hHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 244666666666677777888876443
No 47
>COG3924 Predicted membrane protein [Function unknown]
Probab=31.33 E-value=78 Score=21.49 Aligned_cols=32 Identities=13% Similarity=0.345 Sum_probs=21.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12509 96 NITIDIRNVCVFLAPFFSSLTTIVTYLLTKEV 127 (194)
Q Consensus 96 g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l 127 (194)
|.+...+..|..+|.++-+++...+=++-|++
T Consensus 41 gfP~WFE~aCi~lPllFi~l~~~mvkfif~DI 72 (80)
T COG3924 41 GFPLWFEMACILLPLLFIVLCWAMVKFIFRDI 72 (80)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 44445677899999988777766665555544
No 48
>PF14897 EpsG: EpsG family
Probab=27.51 E-value=3.5e+02 Score=22.28 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCch
Q psy12509 106 VFLAPFFSSLTTIVTYLLTKEVKDTG 131 (194)
Q Consensus 106 ~~~p~i~~~l~ii~vy~l~~~l~~~~ 131 (194)
.+...+.+.++....+...|+..++.
T Consensus 66 ~~~~~i~~~i~~~~~~~~i~~~~~~~ 91 (330)
T PF14897_consen 66 QFFFFIISFISLFLFFFFIKKYSKNY 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHhHHHcccch
Confidence 34555667778888899999988776
No 49
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=27.46 E-value=2.3e+02 Score=20.07 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhhhcc-c----cccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCC
Q psy12509 12 KPSAFKAAFSTRLFSVLRF-E----SVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPL 69 (194)
Q Consensus 12 ~~~i~l~a~~iRl~~~~~~-~----~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~ 69 (194)
+..++++..++-..+.+-. + .-+.+.|+- ++...++=..+|.+|++|. |-|.
T Consensus 6 ~~~ll~~v~~l~~~pl~~~~~~~~~~efgGaD~~-----A~~~I~ei~p~Y~PWf~Pl-wEPp 62 (91)
T TIGR01165 6 TIWLLAAVAALVVLPLLIYAGKGEEEEYGGADGQ-----AEEVIEEIGPDYKPWFSPL-WEPP 62 (91)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCccccccCcchH-----HHHHHHHhCCCCccccccc-ccCC
Confidence 3434444444444553311 2 345677874 4444433224467788874 5553
No 50
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=24.94 E-value=4e+02 Score=22.11 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Q psy12509 108 LAPFFSSLTTIVTYLLTKEVKDT 130 (194)
Q Consensus 108 ~p~i~~~l~ii~vy~l~~~l~~~ 130 (194)
..+.++.+.-+..|.++|+++.|
T Consensus 5 ~~~~f~l~lTl~~y~~a~~l~~r 27 (230)
T COG1346 5 TSPLFGLLLTLLAYFAAKRLYKR 27 (230)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777788888887754
No 51
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=24.92 E-value=1.1e+02 Score=18.56 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCc
Q psy12509 159 AIAIFCMLLTYYSWIKAVKTGS 180 (194)
Q Consensus 159 ~~~~~~~ll~i~~~~~a~~~~~ 180 (194)
+.++++....++.++.|+||+.
T Consensus 8 p~sl~l~~~~l~~f~Wavk~GQ 29 (45)
T PF03597_consen 8 PVSLILGLIALAAFLWAVKSGQ 29 (45)
T ss_pred HHHHHHHHHHHHHHHHHHccCC
Confidence 4577788888999999999875
No 52
>KOG2642|consensus
Probab=24.75 E-value=56 Score=29.15 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q psy12509 37 FDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTSAVLYHLMWLLNITIDIRNVCVFLAPFFSSLT 116 (194)
Q Consensus 37 ~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~a~i~~~~~~~g~~~~l~~~~~~~p~i~~~l~ 116 (194)
-|.-+|.-+++...+ |.. + +||..--|.| +..++.. ..+ +.........|.+|.+.|...
T Consensus 34 mDEiFHi~Qtq~yc~-g~w---s-WdP~ITTpPg----------lYlvsv~---~~s--p~~~~Si~~lrlinll~g~i~ 93 (446)
T KOG2642|consen 34 MDEIFHITQTQRYCS-GNW---S-WDPLITTPPG----------LYLVSVP---ACS--PNERCSILLLRLINLLCGRIF 93 (446)
T ss_pred hhhHhhhHHHHHHhc-CCC---C-CCcccCCCCe----------eEEEeec---ccc--ccccchhHHHHHHHHHhccEe
Confidence 699999999998877 532 2 5886555544 3322111 111 100123334666676664433
Q ss_pred HHHHHHHHHHhcCchHH----HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHH
Q psy12509 117 TIVTYLLTKEVKDTGSG----LVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSW 172 (194)
Q Consensus 117 ii~vy~l~~~l~~~~~g----l~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ll~i~~~ 172 (194)
....-.--+.+.|+..| ..++...+..|..+.-+.. +-||....++.+++..+.
T Consensus 94 lp~li~~~v~llnna~g~~~~~f~~~tl~slP~l~~fsfL--fYTD~~St~~vllay~f~ 151 (446)
T KOG2642|consen 94 LPVLIPTLVILLNNADGQQDVWFTASTLGSLPILIFFSFL--FYTDLGSTFFVLLAYLFC 151 (446)
T ss_pred EEeeeccchhhhcccccceeEEeehhHHhhccHHHHHHHH--HHHhHHHHHHHHHHHhcc
Confidence 22222222222344444 3444455566765544433 347888998888765543
No 53
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=24.27 E-value=1.2e+02 Score=19.12 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCc
Q psy12509 159 AIAIFCMLLTYYSWIKAVKTGS 180 (194)
Q Consensus 159 ~~~~~~~ll~i~~~~~a~~~~~ 180 (194)
+.++++....++.++.|+|++.
T Consensus 9 piSl~l~~~~l~~f~Wavk~GQ 30 (51)
T TIGR00847 9 PISLLLGGVGLVAFLWSLKSGQ 30 (51)
T ss_pred HHHHHHHHHHHHHHHHHHccCC
Confidence 4577788888999999999875
No 54
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=23.98 E-value=2.7e+02 Score=19.78 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=17.0
Q ss_pred cccccChHHHHHHHHHHHHHh-CCcCCCCCCCCCCCCCCc
Q psy12509 32 SVIHEFDPYFNYRTTKFLVEE-GYYKFHNWFDDRAWYPLG 70 (194)
Q Consensus 32 ~~l~~~D~y~~~r~a~~~~~~-G~~~~~~~~d~~~~~P~g 70 (194)
-.+.+.|.- |+.-.++ + .+|.+|+.|..--|.|
T Consensus 29 ge~gGaD~~-----Ae~~I~ei~-p~YePWF~Pl~EPpSG 62 (97)
T COG1930 29 GEFGGADGE-----AEEVITEIK-PGYEPWFQPLWEPPSG 62 (97)
T ss_pred ccccCCcch-----hhHHHHHhC-CCCCcccccccCCCCc
Confidence 345677874 3322222 2 3467888886333334
No 55
>TIGR01998 PTS-II-BC-nag PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes.
Probab=21.10 E-value=3.1e+02 Score=25.17 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhhh
Q psy12509 156 DNEAIAIFCMLLTYYSWIKAVKTGSILWSALTALAYF 192 (194)
Q Consensus 156 d~e~~~~~~~ll~i~~~~~a~~~~~~~~~~~ag~~~~ 192 (194)
-||+.+..|+..+=.++. .+++++|+++.
T Consensus 290 ITEP~EF~FlF~aP~L~~--------~ha~l~g~~~~ 318 (476)
T TIGR01998 290 VTEPLEFSFMFLAPVLYA--------LHALLTGLSLF 318 (476)
T ss_pred CCcHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 489998888777644443 35677777664
No 56
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=20.69 E-value=5e+02 Score=21.57 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy12509 112 FSSLTTIVTYLLTKEVKD 129 (194)
Q Consensus 112 ~~~l~ii~vy~l~~~l~~ 129 (194)
++.+.-+.+|.++++++.
T Consensus 11 ~~l~lTl~~y~~~~~l~~ 28 (232)
T PRK04288 11 FGILVSLIAFGIGTILFK 28 (232)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444445555555443
Done!