Query psy12509
Match_columns 194
No_of_seqs 113 out of 553
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 21:06:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 99.9 1.8E-27 6.3E-32 221.2 13.6 157 16-192 24-190 (724)
2 1emz_A Envelope glycoprotein E 26.8 20 0.00069 18.6 0.7 12 183-194 4-15 (26)
3 1ym0_B Fibrinotic enzyme compo 7.8 1.6E+02 0.0055 14.7 1.0 9 63-71 2-10 (27)
4 1ijd_A Light-harvesting protei 7.0 3.8E+02 0.013 16.1 2.7 18 105-122 13-30 (53)
5 1nkz_A Light-harvesting protei 6.9 3.9E+02 0.013 16.0 2.7 17 105-121 13-29 (53)
6 1p58_D Envelope protein M; fla 6.3 2.9E+02 0.0099 17.8 2.0 35 109-145 39-73 (75)
7 1jb0_M Photosystem 1 reaction 5.4 4.5E+02 0.015 13.9 3.4 18 111-128 13-30 (31)
8 2kpa_A ARNO(375-400); hydrolas 5.3 1.4E+02 0.0046 15.4 -0.0 12 36-47 2-13 (26)
9 3hzq_A Large-conductance mecha 5.1 5.2E+02 0.018 18.0 2.9 28 152-179 83-110 (114)
10 2ifo_A Inovirus; helical virus 4.7 6.1E+02 0.021 14.6 2.8 23 105-127 23-45 (46)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=99.95 E-value=1.8e-27 Score=221.16 Aligned_cols=157 Identities=22% Similarity=0.338 Sum_probs=135.7
Q ss_pred HHHHHHHHhhhhhc----------cccccccChHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCceecCCccccHHHHHH
Q psy12509 16 FKAAFSTRLFSVLR----------FESVIHEFDPYFNYRTTKFLVEEGYYKFHNWFDDRAWYPLGRIIGGTIYPGLMVTS 85 (194)
Q Consensus 16 ~l~a~~iRl~~~~~----------~~~~l~~~D~y~~~r~a~~~~~~G~~~~~~~~d~~~~~P~g~~~~~~~~P~l~~~~ 85 (194)
.++++.+|+.+... .++.++++|+|||.|.+|++++++..| .+.| |+| |.+..+.
T Consensus 24 ~~~sl~~R~~~~~w~~~~~~f~~~~~~~~~~~D~yy~~r~ar~~l~~~~~p--~~~~-----p~g--------~~~~~l~ 88 (724)
T 3rce_A 24 FAFSVLCRLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGFHQP--NDLS-----YFG--------SSLSTLT 88 (724)
T ss_dssp HHHHHHHHTHHHHHHSSCGGGEETTEECCSCHHHHHHHHHHHHHHHSCCCT--TSCC-----CTT--------CHHHHHH
T ss_pred HHHHHHHHHhhHHhhccCcceEECCEEeeccCCHHHHHHHHHHHHhcCCCC--CCCC-----CCc--------chHHHHH
Confidence 57899999997421 135678999999999999999864321 2222 555 4677778
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q psy12509 86 AVLYHLMWLLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCM 165 (194)
Q Consensus 86 a~i~~~~~~~g~~~~l~~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~~~~rt~~G~~d~e~~~~~~~ 165 (194)
+.++++ +|. +++++|+++||++|+++++++|+++||++++++|++||++.|++|++++||++|++|||+++++++
T Consensus 89 a~l~~i---~g~--sl~~v~~~lp~ifg~L~vi~~yll~~el~~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ 163 (724)
T 3rce_A 89 YWLYSI---LPF--SFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLP 163 (724)
T ss_dssp HHHHHS---CSS--CHHHHHHHHHHHHGGGGHHHHHHHHHHTTCHHHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHH
T ss_pred HHHHHH---cCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 886665 454 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHhhh
Q psy12509 166 LLTYYSWIKAVKTGSILWSALTALAYF 192 (194)
Q Consensus 166 ll~i~~~~~a~~~~~~~~~~~ag~~~~ 192 (194)
++++|++++++|+++.+++++||++++
T Consensus 164 ll~~~~~i~alk~~~~~~~~lagl~~~ 190 (724)
T 3rce_A 164 MLILLTFIRLTINKDIFTLLLSPIFIM 190 (724)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999983
No 2
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=26.83 E-value=20 Score=18.60 Aligned_cols=12 Identities=50% Similarity=1.171 Sum_probs=9.0
Q ss_pred HHHHHHHhhhcC
Q psy12509 183 WSALTALAYFYM 194 (194)
Q Consensus 183 ~~~~ag~~~~~~ 194 (194)
|++++|++|+-|
T Consensus 4 wGvl~glayfsm 15 (26)
T 1emz_A 4 WGVLAGIAYFSM 15 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 577888888754
No 3
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=7.81 E-value=1.6e+02 Score=14.74 Aligned_cols=9 Identities=44% Similarity=1.176 Sum_probs=5.8
Q ss_pred CCCCCCCce
Q psy12509 63 DRAWYPLGR 71 (194)
Q Consensus 63 ~~~~~P~g~ 71 (194)
|-.|||-|.
T Consensus 2 ppvwypggq 10 (27)
T 1ym0_B 2 PPVWYPGGQ 10 (27)
T ss_dssp CCCSCTTSC
T ss_pred CceeccCCc
Confidence 346888664
No 4
>1ijd_A Light-harvesting protein B-800/820, alpha chain; pigment-protein complex, alpha-helix apoproteins, intergral protein, photosynthesis; HET: FME RPA BCL; 3.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1
Probab=6.96 E-value=3.8e+02 Score=16.08 Aligned_cols=18 Identities=6% Similarity=0.082 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12509 105 CVFLAPFFSSLTTIVTYL 122 (194)
Q Consensus 105 ~~~~p~i~~~l~ii~vy~ 122 (194)
...+|+++|+++++.+-.
T Consensus 13 tvGlPl~LgaVav~a~lV 30 (53)
T 1ijd_A 13 AFGLPLMLGAVAITALLV 30 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 456788888887776543
No 5
>1nkz_A Light-harvesting protein B-800/850, alpha chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_A* 2fkw_A*
Probab=6.88 E-value=3.9e+02 Score=16.05 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12509 105 CVFLAPFFSSLTTIVTY 121 (194)
Q Consensus 105 ~~~~p~i~~~l~ii~vy 121 (194)
...+|+++|+++++.+-
T Consensus 13 tvglPl~LgaVav~a~l 29 (53)
T 1nkz_A 13 AIGIPALLGSVTVIAIL 29 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHH
Confidence 35678888877776653
No 6
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=6.33 E-value=2.9e+02 Score=17.76 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q psy12509 109 APFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPG 145 (194)
Q Consensus 109 p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~ 145 (194)
.|.++.+.++..+.++.....+ .++..++.++.|+
T Consensus 39 Np~~al~a~~~~w~lG~~~~Qr--vi~~il~llvaPa 73 (75)
T 1p58_D 39 HPGFTIMAAILAYTIGTTHFQR--VLIFILLTAIAPS 73 (75)
T ss_pred ChHHHHHHHHHHHHHcCChHHH--HHHHHHHHHhccc
Confidence 5555555556666555332222 2344444445554
No 7
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=5.36 E-value=4.5e+02 Score=13.93 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy12509 111 FFSSLTTIVTYLLTKEVK 128 (194)
Q Consensus 111 i~~~l~ii~vy~l~~~l~ 128 (194)
+.+..+.++...+|++++
T Consensus 13 ~~Al~~~iLA~rLg~~LY 30 (31)
T 1jb0_M 13 VIALLPAVLAFRLSTELY 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 344445555566666654
No 8
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=5.34 E-value=1.4e+02 Score=15.38 Aligned_cols=12 Identities=17% Similarity=0.700 Sum_probs=8.3
Q ss_pred cChHHHHHHHHH
Q psy12509 36 EFDPYFNYRTTK 47 (194)
Q Consensus 36 ~~D~y~~~r~a~ 47 (194)
..||+|++-.++
T Consensus 2 s~dPFYdml~~R 13 (26)
T 2kpa_A 2 SVDPFYEMLAAR 13 (26)
T ss_dssp CSHHHHHHHTCT
T ss_pred CcchHHHHHHHH
Confidence 468988876554
No 9
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=5.10 E-value=5.2e+02 Score=17.98 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=21.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHhC
Q psy12509 152 AGSYDNEAIAIFCMLLTYYSWIKAVKTG 179 (194)
Q Consensus 152 ~G~~d~e~~~~~~~ll~i~~~~~a~~~~ 179 (194)
.|-+.+...+-+...+.+|+.+|++++-
T Consensus 83 yG~Fi~avInFlIiA~viF~~vk~~nkl 110 (114)
T 3hzq_A 83 YGLFIQSVIDFIIIAFALFIFVKIANTL 110 (114)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778888888899999988763
No 10
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=4.68 E-value=6.1e+02 Score=14.65 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy12509 105 CVFLAPFFSSLTTIVTYLLTKEV 127 (194)
Q Consensus 105 ~~~~p~i~~~l~ii~vy~l~~~l 127 (194)
...=-++++....+-+|...||.
T Consensus 23 ~~IG~aVLgV~v~i~v~k~IRra 45 (46)
T 2ifo_A 23 AAIGGAVLTVMVGIKVYKWVRRA 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445678888888899988874
Done!