Query psy12509
Match_columns 194
No_of_seqs 113 out of 553
Neff 7.5
Searched_HMMs 13730
Date Fri Aug 16 21:06:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12509.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12509hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 9.7 1.2E+02 0.009 15.3 2.5 15 131-145 5-19 (36)
2 d3dtua1 f.24.1.1 (A:14-551) Ba 5.9 2.9E+02 0.021 22.4 4.7 43 103-145 273-315 (538)
3 d1ijda_ f.3.1.1 (A:) Light-har 5.4 2E+02 0.015 15.3 2.2 13 108-120 16-28 (46)
4 d1mkaa_ d.38.1.2 (A:) beta-Hyd 4.7 1.7E+02 0.013 19.7 2.0 26 62-87 61-86 (171)
5 d2je8a1 b.1.4.1 (A:220-330) Be 4.3 94 0.0068 19.0 0.3 11 61-71 73-83 (111)
6 d1ffta_ f.24.1.1 (A:) Cytochro 4.0 4E+02 0.029 21.2 4.2 43 103-145 235-277 (501)
7 d1nkza_ f.3.1.1 (A:) Light-har 4.0 2.9E+02 0.021 15.1 2.2 13 108-120 16-28 (53)
8 d2vzsa1 b.1.4.1 (A:226-335) Ex 3.8 1.1E+02 0.0082 18.7 0.3 12 60-71 70-81 (110)
9 d1xrda1 f.3.1.1 (A:1-52) Light 3.5 3.9E+02 0.028 14.5 2.8 25 1-25 1-31 (52)
10 d2cxaa1 d.108.1.6 (A:1-232) Le 3.4 3.2E+02 0.023 19.6 2.6 33 44-79 36-69 (232)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.73 E-value=1.2e+02 Score=15.30 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHH
Q psy12509 131 GSGLVAAAMISIVPG 145 (194)
Q Consensus 131 ~~gl~Aa~l~a~~p~ 145 (194)
..|++|.+++.+.|.
T Consensus 5 ~Lg~iAt~LFilvPt 19 (36)
T d2axtm1 5 QLGLIATALFVLVPS 19 (36)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457888888878777
No 2
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.94 E-value=2.9e+02 Score=22.40 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q psy12509 103 NVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPG 145 (194)
Q Consensus 103 ~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~ 145 (194)
+|-.++-|.+|..+-+.--...|++++++....|....++...
T Consensus 273 eVYi~ilPa~Gi~s~ii~~~s~k~lfg~~~~~~a~~~i~~ls~ 315 (538)
T d3dtua1 273 EVYIIVLPAFGIVSHVIATFAKKPIFGYLPMVYAMVAIGVLGF 315 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHTT
T ss_pred eeeeeechHHHHHHHHHHhccCccccChHHHHHHHHHHHHHHh
Confidence 4555666667777766666789999998887777666655444
No 3
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=5.42 E-value=2e+02 Score=15.32 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q psy12509 108 LAPFFSSLTTIVT 120 (194)
Q Consensus 108 ~p~i~~~l~ii~v 120 (194)
+|.++|+.++..+
T Consensus 16 ~Pl~LgsVav~s~ 28 (46)
T d1ijda_ 16 LPLMLGAVAITAL 28 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 4666766666544
No 4
>d1mkaa_ d.38.1.2 (A:) beta-Hydroxydecanol thiol ester dehydrase {Escherichia coli [TaxId: 562]}
Probab=4.68 E-value=1.7e+02 Score=19.67 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=16.5
Q ss_pred CCCCCCCCceecCCccccHHHHHHHH
Q psy12509 62 DDRAWYPLGRIIGGTIYPGLMVTSAV 87 (194)
Q Consensus 62 d~~~~~P~g~~~~~~~~P~l~~~~a~ 87 (194)
++.-||-.|+..+.|.+|+...+.|+
T Consensus 61 ~~~ewff~gHFp~~PvmPGvL~iEa~ 86 (171)
T d1mkaa_ 61 NPDLWFFGCHFIGDPVMPGCLGLDAM 86 (171)
T ss_dssp CTTSGGGGTTTTTSCCCCHHHHHHHH
T ss_pred ccccceecccccCcCcCCHHHHHHHH
Confidence 34445555766677789997765443
No 5
>d2je8a1 b.1.4.1 (A:220-330) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=4.33 E-value=94 Score=18.98 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=9.0
Q ss_pred CCCCCCCCCce
Q psy12509 61 FDDRAWYPLGR 71 (194)
Q Consensus 61 ~d~~~~~P~g~ 71 (194)
-+|..|+|+|.
T Consensus 73 ~~p~LW~P~g~ 83 (111)
T d2je8a1 73 TNPVRWMPNGW 83 (111)
T ss_dssp ESCCCBCCTTS
T ss_pred CCccCcCCCCC
Confidence 47899999976
No 6
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=4.04 E-value=4e+02 Score=21.16 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q psy12509 103 NVCVFLAPFFSSLTTIVTYLLTKEVKDTGSGLVAAAMISIVPG 145 (194)
Q Consensus 103 ~~~~~~p~i~~~l~ii~vy~l~~~l~~~~~gl~Aa~l~a~~p~ 145 (194)
++-.++-|.+|+..-+.--..+|++++++....|-...++...
T Consensus 235 ~VYi~ilPa~g~~~~iip~~~~~~lf~~~~~~~a~~~i~~ls~ 277 (501)
T d1ffta_ 235 EVYILILPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSF 277 (501)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHTTS
T ss_pred eeeeehhHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHhcc
Confidence 3455555666666666666689999998887777666655443
No 7
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=3.96 E-value=2.9e+02 Score=15.09 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q psy12509 108 LAPFFSSLTTIVT 120 (194)
Q Consensus 108 ~p~i~~~l~ii~v 120 (194)
+|.++|+.++..+
T Consensus 16 ~Pl~LgsVav~s~ 28 (53)
T d1nkza_ 16 IPALLGSVTVIAI 28 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 4666666665543
No 8
>d2vzsa1 b.1.4.1 (A:226-335) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=3.81 E-value=1.1e+02 Score=18.67 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.6
Q ss_pred CCCCCCCCCCce
Q psy12509 60 WFDDRAWYPLGR 71 (194)
Q Consensus 60 ~~d~~~~~P~g~ 71 (194)
.-+|..|.|+|.
T Consensus 70 i~~p~LW~P~~~ 81 (110)
T d2vzsa1 70 LDRPNVWWPAGM 81 (110)
T ss_dssp EESCCCCCCTTS
T ss_pred eCCCceeCCCCC
Confidence 457899999876
No 9
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=3.53 E-value=3.9e+02 Score=14.47 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=14.9
Q ss_pred CcchhhhhhchHHHHH------HHHHHHHhh
Q psy12509 1 MFRLKSVLGSHKPSAF------KAAFSTRLF 25 (194)
Q Consensus 1 ~~~~~~~~~~~~~~i~------l~a~~iRl~ 25 (194)
|-|-+.++...++++. .+++.|+++
T Consensus 1 M~kiW~~fDPRr~lva~~~fL~~LAl~IHfi 31 (52)
T d1xrda1 1 MWRIWQLFDPRQALVGLATFLFVLALLIHFI 31 (52)
T ss_dssp CGGGGGTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777776663 445555544
No 10
>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
Probab=3.35 E-value=3.2e+02 Score=19.65 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCcCCCCCCCCCCC-CCCceecCCcccc
Q psy12509 44 RTTKFLVEEGYYKFHNWFDDRAW-YPLGRIIGGTIYP 79 (194)
Q Consensus 44 r~a~~~~~~G~~~~~~~~d~~~~-~P~g~~~~~~~~P 79 (194)
......+++|++|+.+.-||..| .|.-|-+ ..|
T Consensus 36 ~~Ll~AY~~GiFPw~~~~~~i~WwsP~~R~v---l~~ 69 (232)
T d2cxaa1 36 ARLLMAYQRGIFPWFSPGDPILWWSPDPRAV---LWP 69 (232)
T ss_dssp HHHHHHHHHTCEECCCTTSCCEEECCSSEEE---ECG
T ss_pred HHHHHHHHcCCccCCcCCCCeEEEecCCCEE---ECC
Done!