RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12509
         (194 letters)



>d2asba2 d.52.3.1 (A:184-262) Transcription factor NusA, C-terminal
           domains {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 79

 Score = 26.6 bits (59), Expect = 0.58
 Identities = 11/58 (18%), Positives = 20/58 (34%)

Query: 119 VTYLLTKEVKDTGSGLVAAAMISIVPGYISRSVAGSYDNEAIAIFCMLLTYYSWIKAV 176
           V  L + EV +   G V    ++   G+ S+    S      A    +      ++ V
Sbjct: 6   VRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNV 63


>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
           factor ERF2, post-G domain {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 95

 Score = 25.1 bits (55), Expect = 2.5
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 61  FDDRAWYPLGRIIGGTIYPGLMVTSAVLYHLMWLLNITIDIRNVCVFLAPFFSSLTT--I 118
           + D      G+I  G+I     V       L+  +N T+++  +        SS      
Sbjct: 18  YKDLGTILEGKIEAGSIKKNSNV-------LVMPINQTLEVTAIYDEADEEISSSICGDQ 70

Query: 119 VTYLLTKEVKDTGSGLVAAA 138
           V   +  +  D  +G V  +
Sbjct: 71  VRLRVRGDDSDVQTGYVLTS 90


>d1ofza_ b.68.8.1 (A:) Fucose-specific lectin {Orange peel mushroom
           (Aleuria aurantia) [TaxId: 5188]}
          Length = 312

 Score = 26.1 bits (57), Expect = 3.3
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 57  FHNWFDDRAWYPLGRIIGGTIYPGLMVTS 85
             + +D  +WY  G     +    +   S
Sbjct: 190 REHCWDSNSWYVGGFSASASAGVSIAAIS 218


>d1igra2 c.10.2.5 (A:300-478) Type 1 insulin-like growth factor
           receptor extracellular domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 179

 Score = 24.6 bits (53), Expect = 7.0
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 96  NITIDIR---NVCVFLAPFFSSLTTIVTYLL 123
           N+ I+IR   N+   L  F   +  +  Y+ 
Sbjct: 30  NLLINIRRGNNIASELENFMGLIEVVTGYVK 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 749,870
Number of extensions: 33912
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 4
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.1 bits)