Query psy12510
Match_columns 236
No_of_seqs 210 out of 402
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 21:08:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1664|consensus 100.0 1.5E-41 3.3E-46 295.4 14.5 120 117-236 1-120 (220)
2 KOG1664|consensus 100.0 2.9E-32 6.3E-37 237.5 10.9 154 3-178 1-160 (220)
3 PF01991 vATP-synt_E: ATP synt 99.4 1E-11 2.2E-16 104.5 13.0 104 132-235 1-104 (198)
4 COG1390 NtpE Archaeal/vacuolar 99.2 4.8E-10 1E-14 97.7 13.6 102 126-228 4-105 (194)
5 PRK03963 V-type ATP synthase s 98.9 2.9E-08 6.2E-13 84.9 14.0 109 126-236 4-112 (198)
6 PRK01194 V-type ATP synthase s 98.9 3.2E-08 7E-13 85.3 13.4 107 127-236 4-112 (185)
7 PRK02292 V-type ATP synthase s 98.6 1.2E-06 2.5E-11 74.7 14.2 105 126-236 3-111 (188)
8 COG1390 NtpE Archaeal/vacuolar 98.3 1.1E-05 2.4E-10 70.5 11.9 86 12-97 4-90 (194)
9 PF01991 vATP-synt_E: ATP synt 98.1 5.4E-05 1.2E-09 63.7 11.3 73 18-90 1-73 (198)
10 PRK01558 V-type ATP synthase s 97.3 0.015 3.3E-07 50.6 15.5 111 119-234 2-112 (198)
11 PRK01005 V-type ATP synthase s 96.6 0.16 3.5E-06 45.0 15.7 107 119-229 7-114 (207)
12 PRK03963 V-type ATP synthase s 95.8 0.22 4.7E-06 42.6 11.9 79 12-90 4-82 (198)
13 PRK01194 V-type ATP synthase s 92.3 1.9 4.2E-05 37.2 10.5 76 13-90 4-81 (185)
14 PRK08475 F0F1 ATP synthase sub 92.1 3.7 8E-05 34.8 11.8 87 130-232 79-165 (167)
15 PRK02292 V-type ATP synthase s 92.0 3.8 8.2E-05 34.8 11.8 75 12-90 3-81 (188)
16 PF06188 HrpE: HrpE/YscL/FliH 89.7 8.4 0.00018 33.5 12.0 94 129-234 31-124 (191)
17 PRK01558 V-type ATP synthase s 83.0 31 0.00067 30.0 14.6 88 5-96 2-90 (198)
18 TIGR02499 HrpE_YscL_not type I 74.1 46 0.001 27.1 12.3 93 130-234 15-107 (166)
19 TIGR03321 alt_F1F0_F0_B altern 57.9 1.4E+02 0.003 26.6 12.7 89 133-233 65-153 (246)
20 PRK07352 F0F1 ATP synthase sub 46.2 1.8E+02 0.0039 24.4 13.1 90 133-234 79-168 (174)
21 PRK01005 V-type ATP synthase s 44.7 2.3E+02 0.0049 25.2 12.1 83 5-91 7-89 (207)
22 PF01765 RRF: Ribosome recycli 41.5 1.6E+02 0.0035 24.7 7.7 33 120-152 89-121 (165)
23 PRK06231 F0F1 ATP synthase sub 40.9 2.5E+02 0.0054 24.6 13.1 90 133-234 108-197 (205)
24 PRK14474 F0F1 ATP synthase sub 40.5 2.8E+02 0.0061 25.1 13.9 87 135-233 67-153 (250)
25 TIGR02926 AhaH ATP synthase ar 40.3 1.6E+02 0.0034 22.1 7.8 41 126-166 33-73 (85)
26 TIGR02926 AhaH ATP synthase ar 39.2 1.6E+02 0.0035 22.0 7.9 39 19-57 25-63 (85)
27 CHL00019 atpF ATP synthase CF0 38.2 2.5E+02 0.0054 23.8 15.1 91 132-234 83-173 (184)
28 PRK14473 F0F1 ATP synthase sub 37.3 2.4E+02 0.0052 23.3 12.7 92 131-234 66-157 (164)
29 PRK08475 F0F1 ATP synthase sub 35.8 2.7E+02 0.0058 23.5 8.8 56 16-71 79-134 (167)
30 COG2811 NtpF Archaeal/vacuolar 35.4 2.5E+02 0.0053 22.9 8.4 40 131-170 31-70 (108)
31 cd03527 RuBisCO_small Ribulose 34.1 36 0.00079 27.1 2.4 15 117-131 12-26 (99)
32 COG2811 NtpF Archaeal/vacuolar 30.4 3E+02 0.0065 22.4 8.7 46 17-62 31-76 (108)
33 PRK12705 hypothetical protein; 27.0 6.8E+02 0.015 25.4 14.5 50 120-169 153-223 (508)
34 PF05010 TACC: Transforming ac 24.3 5.1E+02 0.011 23.1 13.2 104 124-232 5-108 (207)
35 PRK06231 F0F1 ATP synthase sub 22.4 5.3E+02 0.011 22.5 8.8 54 18-71 107-160 (205)
36 PRK13460 F0F1 ATP synthase sub 21.4 4.9E+02 0.011 21.8 13.1 90 133-234 76-165 (173)
37 PRK15201 fimbriae regulatory p 21.2 73 0.0016 28.5 2.2 35 104-138 83-117 (198)
38 COG0711 AtpF F0F1-type ATP syn 21.0 5E+02 0.011 21.7 10.6 111 93-207 22-136 (161)
39 PRK13428 F0F1 ATP synthase sub 20.3 8.2E+02 0.018 24.0 14.7 47 133-179 61-107 (445)
40 PRK13460 F0F1 ATP synthase sub 20.3 5.2E+02 0.011 21.6 7.9 54 18-71 75-128 (173)
No 1
>KOG1664|consensus
Probab=100.00 E-value=1.5e-41 Score=295.44 Aligned_cols=120 Identities=41% Similarity=0.690 Sum_probs=119.0
Q ss_pred CChHHHHHHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHH
Q psy12510 117 LDDAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMN 196 (236)
Q Consensus 117 l~d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLk 196 (236)
|||++|++||+|||+||+|||+|||+||+++|+|||||||++||++++.+|+++|++|+||++++++|+.||++|++||+
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHhhccC
Q psy12510 197 VMRVKEDSVGKIIEEAKGRLSDITEDRTKYTEILEKLIFQ 236 (236)
Q Consensus 197 vL~aR~~~l~~l~~eAk~kL~~~~~d~~~Yk~lL~~LIlQ 236 (236)
||++|+++|+++|++|+++|+.++.|++.|+.+|++||+|
T Consensus 81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ 120 (220)
T KOG1664|consen 81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQ 120 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987
No 2
>KOG1664|consensus
Probab=99.97 E-value=2.9e-32 Score=237.48 Aligned_cols=154 Identities=29% Similarity=0.417 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhHHHH
Q psy12510 3 LDDAAVEKQIERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMN 82 (236)
Q Consensus 3 l~d~~v~~qi~~Mv~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RLk 82 (236)
|||+||++||+|||+||+|||+|||+||+++|+|||||||++||++++.+|+++|++|+||++++++|+.||++|++||+
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhh--hhHH----hhhcCCCcccccCCCchhhhccCChHHHHHHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHH
Q psy12510 83 VMRKLCDK--STFR----SYLKLPNAADIFRPPPTLLGMALDDAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIER 156 (236)
Q Consensus 83 vL~~r~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~l~d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK 156 (236)
+|++|++. +-|. --.+.|+..+-+.+-+..+- ++-|....+-+.-=.++|-+
T Consensus 81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~Li-----------vQ~Ll~L~Ep~~Ivrcre~D----------- 138 (220)
T KOG1664|consen 81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLI-----------VQGLLQLLEPEVIVRCREKD----------- 138 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHH-----------HHHHHHhCCCeeEEeehhhh-----------
Confidence 99999999 2222 22335666555554444221 12222222222222333322
Q ss_pred HHHHHHhHHHHHHHHHHHhHhH
Q psy12510 157 ERVTRDGKASVDEEYAKKYRQV 178 (236)
Q Consensus 157 ~~lV~~ek~kI~~~yekK~Kq~ 178 (236)
..||+.........|-.+-+..
T Consensus 139 ~~lVe~~~~~a~~~y~~ka~~~ 160 (220)
T KOG1664|consen 139 LKLVEAALPKAIEEYKEKAGVG 160 (220)
T ss_pred hHHHHHHHHHHHHHHHHHhcCC
Confidence 3488888888888888887765
No 3
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=99.37 E-value=1e-11 Score=104.50 Aligned_cols=104 Identities=24% Similarity=0.392 Sum_probs=100.8
Q ss_pred HHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q psy12510 132 FIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKIIEE 211 (236)
Q Consensus 132 FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l~~l~~e 211 (236)
||.+||+.+|++|...|.++++-.+..........+...+++..++++..+....|...+.+|..+|.+|+++++++|++
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~ 80 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE 80 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccChhhHHHHHHhhcc
Q psy12510 212 AKGRLSDITEDRTKYTEILEKLIF 235 (236)
Q Consensus 212 Ak~kL~~~~~d~~~Yk~lL~~LIl 235 (236)
++.+|..++.+++.|+.+|.+||.
T Consensus 81 ~~~~L~~~~~~~~~Y~~~L~~li~ 104 (198)
T PF01991_consen 81 VKEKLKSFSKDPDDYKKFLKKLIE 104 (198)
T ss_dssp HHHHHHCTTCCC-THHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999998789999999985
No 4
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=99.18 E-value=4.8e-10 Score=97.74 Aligned_cols=102 Identities=22% Similarity=0.377 Sum_probs=98.8
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHH
Q psy12510 126 IERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSV 205 (236)
Q Consensus 126 i~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l 205 (236)
+..|+.||.++|.++|++|...|.++++.++...+......++..+.+..++++..++...|+..+++|..+|.++.++|
T Consensus 4 ~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l 83 (194)
T COG1390 4 LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEIL 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChhhHHH
Q psy12510 206 GKIIEEAKGRLSDITEDRTKYTE 228 (236)
Q Consensus 206 ~~l~~eAk~kL~~~~~d~~~Yk~ 228 (236)
+++++.+.++|..+.++|. |..
T Consensus 84 ~~~~~~~~e~L~~i~~~~~-~~~ 105 (194)
T COG1390 84 ESVFEAVEEKLRNIASDPE-YES 105 (194)
T ss_pred HHHHHHHHHHHHcCcCCcc-hHH
Confidence 9999999999999999987 444
No 5
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=98.93 E-value=2.9e-08 Score=84.89 Aligned_cols=109 Identities=24% Similarity=0.356 Sum_probs=89.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHH
Q psy12510 126 IERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSV 205 (236)
Q Consensus 126 i~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l 205 (236)
+..++.=|..+|+.++.+|-..|..+-+-........-.......-++-...+++.++...|+..++.|..+|.+|++++
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~ 83 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELI 83 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888666555555544444444555556678888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHHhhccC
Q psy12510 206 GKIIEEAKGRLSDITEDRTKYTEILEKLIFQ 236 (236)
Q Consensus 206 ~~l~~eAk~kL~~~~~d~~~Yk~lL~~LIlQ 236 (236)
+++|++|.++|..++.+ .|+.+|.+||.|
T Consensus 84 ~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~ 112 (198)
T PRK03963 84 SEVLEAVRERLAELPED--EYFETLKALTKE 112 (198)
T ss_pred HHHHHHHHHHHHhhhhh--hHHHHHHHHHHH
Confidence 99999999999998876 799999999864
No 6
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=98.91 E-value=3.2e-08 Score=85.25 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=68.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhH-hHHH-HHHhhhhhhhchHHHHHHHHHHHH
Q psy12510 127 ERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYR-QVEL-RHRTDCSNIKSEGRMNVMRVKEDS 204 (236)
Q Consensus 127 ~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~K-q~e~-~kkI~~S~~~N~~RLkvL~aR~~~ 204 (236)
..++.=|..+|+.+|.+|-..|+.+-+ +=..-.+.+-.++...|.+|.+ +++. .+||. |+.-=.+|+++|.+|+++
T Consensus 4 e~i~~~I~~ea~~~a~~I~~eA~~~ae-ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~rii-s~A~Le~R~~~L~aree~ 81 (185)
T PRK01194 4 EDVIKDIEKSREEKKKEINDEYSKRIE-KLEKECDSKIQSIKEYYEKKMRAEISRLKKSII-DKANIEARSIKREKRREI 81 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHH
Confidence 344555555666666555555555432 1112222333344444444433 2222 23333 444447899999999999
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHhhccC
Q psy12510 205 VGKIIEEAKGRLSDITEDRTKYTEILEKLIFQ 236 (236)
Q Consensus 205 l~~l~~eAk~kL~~~~~d~~~Yk~lL~~LIlQ 236 (236)
|+++|+.|..+|..+++++ .|+.+|.+||+|
T Consensus 82 I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~ 112 (185)
T PRK01194 82 LKDYLDIAYEHLMNITKSK-EYDSILNKMIEV 112 (185)
T ss_pred HHHHHHHHHHHHHcccCCc-hHHHHHHHHHHH
Confidence 9999999999999999877 799999999974
No 7
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=98.63 E-value=1.2e-06 Score=74.67 Aligned_cols=105 Identities=18% Similarity=0.328 Sum_probs=81.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHH---HHHHHHHH-hHhHHHHHHhhhhhhhchHHHHHHHHH
Q psy12510 126 IERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKAS---VDEEYAKK-YRQVELRHRTDCSNIKSEGRMNVMRVK 201 (236)
Q Consensus 126 i~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~k---I~~~yekK-~Kq~e~~kkI~~S~~~N~~RLkvL~aR 201 (236)
+...+.=|.++|+..+.+|...|+.+-.- ++..-... |...+..+ .+....-.+...|...|.+|..+|.+|
T Consensus 3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~~----i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r 78 (188)
T PRK02292 3 LETVVEDIRDEARARASEIRAEADEEAEE----IIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778889999999888888876543 44443333 44444333 334445556779999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhhHHHHHHhhccC
Q psy12510 202 EDSVGKIIEEAKGRLSDITEDRTKYTEILEKLIFQ 236 (236)
Q Consensus 202 ~~~l~~l~~eAk~kL~~~~~d~~~Yk~lL~~LIlQ 236 (236)
+.+|+++|+.|+.+|..++.+ .|+.+|.+||.+
T Consensus 79 ~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~ 111 (188)
T PRK02292 79 KEVLEDVRNQVEDEIASLDGD--KREELTKSLLDA 111 (188)
T ss_pred HHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHh
Confidence 999999999999999998875 799999999864
No 8
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=98.29 E-value=1.1e-05 Score=70.47 Aligned_cols=86 Identities=17% Similarity=0.257 Sum_probs=80.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhHHHHHHHhhhhh-
Q psy12510 12 IERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRKLCDK- 90 (236)
Q Consensus 12 i~~Mv~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RLkvL~~r~~~- 90 (236)
+..|+.||.++|.++|++|...|.++++.++...++.....++..+.+..++++..++...|+..+++|..+|.++..+
T Consensus 4 ~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l 83 (194)
T COG1390 4 LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEIL 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHhhh
Q psy12510 91 STFRSYL 97 (236)
Q Consensus 91 ~~~~~~~ 97 (236)
..|.+-+
T Consensus 84 ~~~~~~~ 90 (194)
T COG1390 84 ESVFEAV 90 (194)
T ss_pred HHHHHHH
Confidence 4444433
No 9
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=98.07 E-value=5.4e-05 Score=63.70 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=71.8
Q ss_pred HHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhHHHHHHHhhhhh
Q psy12510 18 FIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRKLCDK 90 (236)
Q Consensus 18 FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RLkvL~~r~~~ 90 (236)
||.+||+.+|.+|...|.++++-.+..........+...+++..++++..+....|...+.+|..+|.+|.++
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~ 73 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEI 73 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998
No 10
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=97.33 E-value=0.015 Score=50.62 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHH
Q psy12510 119 DAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVM 198 (236)
Q Consensus 119 d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL 198 (236)
+.+++.=+.+|..=|..+|+.+|.+|-..|.++= ..|+..-+..-..-..+=.++++.-+++..|......|-.+|
T Consensus 2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eA----e~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll 77 (198)
T PRK01558 2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEA----EEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI 77 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888899999999999998888764 447777777766667777788888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHhhc
Q psy12510 199 RVKEDSVGKIIEEAKGRLSDITEDRTKYTEILEKLI 234 (236)
Q Consensus 199 ~aR~~~l~~l~~eAk~kL~~~~~d~~~Yk~lL~~LI 234 (236)
.++..+++.+.+.+...+.... |++.|..++..|+
T Consensus 78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll 112 (198)
T PRK01558 78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVV 112 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 9999999866444444445444 8888999998876
No 11
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=96.61 E-value=0.16 Score=44.97 Aligned_cols=107 Identities=12% Similarity=0.203 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHH
Q psy12510 119 DAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVM 198 (236)
Q Consensus 119 d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL 198 (236)
++-++.=+.+|..=|..+|+.+|.+|-..|..+=+ .|+..-+......-+.=.++++..++-..|+.-=..|-.+|
T Consensus 7 ~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l 82 (207)
T PRK01005 7 QDKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLE 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888999999999999999999988753 47777777666666666777788888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hccChhhHHHH
Q psy12510 199 RVKEDSVGKIIEEAKGRLSD-ITEDRTKYTEI 229 (236)
Q Consensus 199 ~aR~~~l~~l~~eAk~kL~~-~~~d~~~Yk~l 229 (236)
.++.++++.+|..+.+.|.. ...||+.-..|
T Consensus 83 ~aKqevi~~vf~~a~~~lv~~~~~d~~~l~~l 114 (207)
T PRK01005 83 SLKQAVENKIFRESLGEWLEHVLTDPEVSAKL 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999887 55677633333
No 12
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=95.77 E-value=0.22 Score=42.61 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=61.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhHHHHHHHhhhhh
Q psy12510 12 IERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRKLCDK 90 (236)
Q Consensus 12 i~~Mv~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RLkvL~~r~~~ 90 (236)
+..++.=|..+|+.++.+|-..|..+-.-........-.......-++-...++..++...|+.-++.|..+|.+|+++
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el 82 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEEL 82 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888866555555555444444455555667888899999999999999999999998
No 13
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=92.34 E-value=1.9 Score=37.18 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=41.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhH-hH-HHHHHhHhhhhhhhHHHHHHHhhhhh
Q psy12510 13 ERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYR-QV-ELRHRTDCSNIKSEGRMNVMRKLCDK 90 (236)
Q Consensus 13 ~~Mv~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~k-q~-e~~kkI~~S~~~N~~RLkvL~~r~~~ 90 (236)
..++.=|..+|+.+|.+|-..|..+-+ +=..-.+.+-.++.+.|..+.+ ++ ...++|.-|..+ .+|+++|.+|.++
T Consensus 4 e~i~~~I~~ea~~~a~~I~~eA~~~ae-ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~L-e~R~~~L~aree~ 81 (185)
T PRK01194 4 EDVIKDIEKSREEKKKEINDEYSKRIE-KLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANI-EARSIKREKRREI 81 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHH
Confidence 345555666666666666666655532 2222223333445555555444 22 233344433333 7888999999998
No 14
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=92.13 E-value=3.7 Score=34.81 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=64.9
Q ss_pred HHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHH
Q psy12510 130 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKII 209 (236)
Q Consensus 130 v~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l~~l~ 209 (236)
..-+..+|+..|.+|-..|..+-+.++..++.+-+......-++-...++..+ +--+...|.++++++|
T Consensus 79 ~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek-----------~~a~~elk~eii~~~~ 147 (167)
T PRK08475 79 ALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEV-----------RKMEREVVEEVLNELF 147 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 44566788889999999999998888888888877777766666555555444 4457888999999999
Q ss_pred HHHHHHHHhhccChhhHHHHHHh
Q psy12510 210 EEAKGRLSDITEDRTKYTEILEK 232 (236)
Q Consensus 210 ~eAk~kL~~~~~d~~~Yk~lL~~ 232 (236)
+. +|.+ =|++.|-.++..
T Consensus 148 ~~---~~~~--l~~~~y~~~~~~ 165 (167)
T PRK08475 148 ES---KKVS--LNQQEYVNILLK 165 (167)
T ss_pred Hh---hhcC--CCHHHHHHHHhc
Confidence 99 5544 466679887753
No 15
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=92.02 E-value=3.8 Score=34.78 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=52.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH---HHHHHHHH-hHhHHHHHHhHhhhhhhhHHHHHHHhh
Q psy12510 12 IERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKAS---VDEEYAKK-YRQVELRHRTDCSNIKSEGRMNVMRKL 87 (236)
Q Consensus 12 i~~Mv~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~k---I~~~yekK-~kq~e~~kkI~~S~~~N~~RLkvL~~r 87 (236)
+...+.=|.++|...+.+|...|+.+- ..++..-+.. |...+..+ .+....-.+...|...|.+|..+|.+|
T Consensus 3 l~~i~~~I~~~a~~e~~~I~~ea~~~~----~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r 78 (188)
T PRK02292 3 LETVVEDIRDEARARASEIRAEADEEA----EEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888887764 3344333333 44444333 344455566788999999999999999
Q ss_pred hhh
Q psy12510 88 CDK 90 (236)
Q Consensus 88 ~~~ 90 (236)
..+
T Consensus 79 ~~~ 81 (188)
T PRK02292 79 KEV 81 (188)
T ss_pred HHH
Confidence 998
No 16
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=89.73 E-value=8.4 Score=33.51 Aligned_cols=94 Identities=16% Similarity=0.274 Sum_probs=68.3
Q ss_pred HHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHH
Q psy12510 129 MVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKI 208 (236)
Q Consensus 129 Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l~~l 208 (236)
-..=|...|+.+|+.|-..|++++.- ++.+....+...+-.+....-.. .-..|-.+...-...+..+
T Consensus 31 ~a~~IL~~A~~qA~~Il~~Ae~eAe~----l~~~a~e~a~~~~~q~a~~ll~~--------~~~~~e~l~~~l~~~~~~l 98 (191)
T PF06188_consen 31 QAREILEDARQQAEQILQQAEEEAEA----LLEQAYEQAEAQFWQQANALLQE--------WQQQREQLLQQLEEQAEEL 98 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 34778999999999999999999876 66666666666665443322111 1122445555567778889
Q ss_pred HHHHHHHHHhhccChhhHHHHHHhhc
Q psy12510 209 IEEAKGRLSDITEDRTKYTEILEKLI 234 (236)
Q Consensus 209 ~~eAk~kL~~~~~d~~~Yk~lL~~LI 234 (236)
+.+|-.+|.+-..++.++..+|..|.
T Consensus 99 l~~al~~lL~e~~~~qrv~aLlr~l~ 124 (191)
T PF06188_consen 99 LSQALERLLDETPDQQRVAALLRQLL 124 (191)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 99999999998889999999998875
No 17
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=82.98 E-value=31 Score=30.01 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhHHHHHH
Q psy12510 5 DAAVEKQIERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVM 84 (236)
Q Consensus 5 d~~v~~qi~~Mv~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RLkvL 84 (236)
+.+++.=+.+|..=|..+|+.+|.+|-..|.++ -..|+..-+..-..-.++=.++++.-+++..|......|-.+|
T Consensus 2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~e----Ae~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll 77 (198)
T PRK01558 2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEE----AEEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI 77 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777888888888888999999998888775 5677777777666667777888888888889999999999999
Q ss_pred Hhhhhh-hhHHhh
Q psy12510 85 RKLCDK-STFRSY 96 (236)
Q Consensus 85 ~~r~~~-~~~~~~ 96 (236)
.++..+ ..|..-
T Consensus 78 ~~k~~i~~~~~~~ 90 (198)
T PRK01558 78 SFEKSIKSLFKAA 90 (198)
T ss_pred HHHHHHHHHHHHH
Confidence 999999 444433
No 18
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=74.14 E-value=46 Score=27.07 Aligned_cols=93 Identities=14% Similarity=0.189 Sum_probs=54.0
Q ss_pred HHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHH
Q psy12510 130 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKII 209 (236)
Q Consensus 130 v~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l~~l~ 209 (236)
-.=|..+|+.+|+.|-..|.++++-.+..-.+++...-..+.....-...... -+.+..=..-+-.|.
T Consensus 15 A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~~------------~~~~~~~e~~l~~l~ 82 (166)
T TIGR02499 15 AQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQEA------------EQLEASLEERLAELV 82 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 44577899999999999999999887777666665555544443332211111 111222222333344
Q ss_pred HHHHHHHHhhccChhhHHHHHHhhc
Q psy12510 210 EEAKGRLSDITEDRTKYTEILEKLI 234 (236)
Q Consensus 210 ~eAk~kL~~~~~d~~~Yk~lL~~LI 234 (236)
-.+-.++..-..++..+..++..++
T Consensus 83 ~~~~~kil~~~~~~e~l~~lv~~al 107 (166)
T TIGR02499 83 LQALEQILGEYDEPERLVRLLRQLL 107 (166)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4444444444466777777776654
No 19
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=57.90 E-value=1.4e+02 Score=26.63 Aligned_cols=89 Identities=17% Similarity=0.254 Sum_probs=58.5
Q ss_pred HHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q psy12510 133 IQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKIIEEA 212 (236)
Q Consensus 133 I~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l~~l~~eA 212 (236)
...+|+..+.+|-..|..+-.-++..++.+-+..+....++-...++.++.-.... .|.++.+-.+.-|
T Consensus 65 ~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~-----------l~~ei~~la~~~A 133 (246)
T TIGR03321 65 KNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDE-----------LRRRTGAEVFAIA 133 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 44567888888888888888888888888888888877777777777666554333 3445555555556
Q ss_pred HHHHHhhccChhhHHHHHHhh
Q psy12510 213 KGRLSDITEDRTKYTEILEKL 233 (236)
Q Consensus 213 k~kL~~~~~d~~~Yk~lL~~L 233 (236)
.+-|.... |++..+.++...
T Consensus 134 ~kil~~~~-d~~~~~~lid~~ 153 (246)
T TIGR03321 134 RKVLTDLA-DTDLEERMVDVF 153 (246)
T ss_pred HHHHHHhc-ChHHHHHHHHHH
Confidence 55555443 333444444443
No 20
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=46.16 E-value=1.8e+02 Score=24.43 Aligned_cols=90 Identities=10% Similarity=0.180 Sum_probs=51.9
Q ss_pred HHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q psy12510 133 IQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKIIEEA 212 (236)
Q Consensus 133 I~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l~~l~~eA 212 (236)
...+|+.+|.+|...|..+-+.++..++.+-...+....+.-...++..++-.. -.-|.++.+-.++-|
T Consensus 79 ~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~-----------~~l~~qi~~la~~~A 147 (174)
T PRK07352 79 KLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVI-----------AQLRREAAELAIAKA 147 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 345666677777777777766666666666655555555555444444443222 223445555556666
Q ss_pred HHHHHhhccChhhHHHHHHhhc
Q psy12510 213 KGRLSDITEDRTKYTEILEKLI 234 (236)
Q Consensus 213 k~kL~~~~~d~~~Yk~lL~~LI 234 (236)
.+-|..-. |++....++..+|
T Consensus 148 ~kil~~~l-~~~~~~~li~~~i 168 (174)
T PRK07352 148 ESQLPGRL-DEDAQQRLIDRSI 168 (174)
T ss_pred HHHHHhHc-CHHHHHHHHHHHH
Confidence 66666654 4455667766655
No 21
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=44.69 E-value=2.3e+02 Score=25.18 Aligned_cols=83 Identities=8% Similarity=0.111 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhHHHHHH
Q psy12510 5 DAAVEKQIERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVM 84 (236)
Q Consensus 5 d~~v~~qi~~Mv~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RLkvL 84 (236)
++-++.=+.+|..=|..+|+.+|.+|-..|..+= ..|+.+-+.....--+.=.++++..++-..|+.-=..|-.+|
T Consensus 7 ~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~A----e~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l 82 (207)
T PRK01005 7 QDKLKQICDALREETLKPAEEEAGAIVHNAKEQA----KRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLE 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888889999999999999998774 347777777666666666777777777888888888888888
Q ss_pred Hhhhhhh
Q psy12510 85 RKLCDKS 91 (236)
Q Consensus 85 ~~r~~~~ 91 (236)
.++-++.
T Consensus 83 ~aKqevi 89 (207)
T PRK01005 83 SLKQAVE 89 (207)
T ss_pred HHHHHHH
Confidence 8888873
No 22
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=41.49 E-value=1.6e+02 Score=24.71 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHhhHHHH
Q psy12510 120 AAVEKQIERMVAFIQTEADEKLDDIRRKIEEDY 152 (236)
Q Consensus 120 ~ev~~qi~~Mv~FI~qEA~EKA~EI~~kAeEEF 152 (236)
.|.-.++-+.+.-+-.+|....+.|+..+...+
T Consensus 89 ~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l 121 (165)
T PF01765_consen 89 EERRKELVKQAKKIAEEAKVSIRNIRRDAMKKL 121 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666665554
No 23
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=40.88 E-value=2.5e+02 Score=24.60 Aligned_cols=90 Identities=11% Similarity=0.150 Sum_probs=43.0
Q ss_pred HHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q psy12510 133 IQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKIIEEA 212 (236)
Q Consensus 133 I~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l~~l~~eA 212 (236)
..++|+.+|.+|...|.++-+.++..++..-+..+...-+.-...++..+.-.. -.-+.++.+--.+-|
T Consensus 108 ~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~-----------~~Lk~ei~~lAv~iA 176 (205)
T PRK06231 108 RHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELK-----------EQLQKESVELAMLAA 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 445566666666666666666666666655444444333333333333322221 111222333333334
Q ss_pred HHHHHhhccChhhHHHHHHhhc
Q psy12510 213 KGRLSDITEDRTKYTEILEKLI 234 (236)
Q Consensus 213 k~kL~~~~~d~~~Yk~lL~~LI 234 (236)
.+-|..-. |+...+.++...|
T Consensus 177 ~kiL~k~l-d~~~~~~lI~~~i 197 (205)
T PRK06231 177 EELIKKKV-DREDDDKLVDEFI 197 (205)
T ss_pred HHHHHhhC-CHHHHHHHHHHHH
Confidence 44444433 5556777776655
No 24
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=40.46 E-value=2.8e+02 Score=25.05 Aligned_cols=87 Identities=10% Similarity=0.200 Sum_probs=55.0
Q ss_pred hHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q psy12510 135 TEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKIIEEAKG 214 (236)
Q Consensus 135 qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l~~l~~eAk~ 214 (236)
.+|+..+.+|-..|..+=+-++..++.+-+..+...-++....++..+.-....+ |.++.+-.+.-|.+
T Consensus 67 ~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L-----------~~~v~~la~~~A~k 135 (250)
T PRK14474 67 QSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKAL-----------QQQTGQQMVKIIRA 135 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4677777888888888888888888888888888777777777777666554443 33444444444555
Q ss_pred HHHhhccChhhHHHHHHhh
Q psy12510 215 RLSDITEDRTKYTEILEKL 233 (236)
Q Consensus 215 kL~~~~~d~~~Yk~lL~~L 233 (236)
-|.+.. |.+..+.++..+
T Consensus 136 iL~~~~-d~~~~~~lid~~ 153 (250)
T PRK14474 136 ALADLA-NATLEQQIVGIF 153 (250)
T ss_pred HHHhhc-CHHHHHHHHHHH
Confidence 444433 333344444443
No 25
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=40.34 E-value=1.6e+02 Score=22.08 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=19.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHH
Q psy12510 126 IERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKAS 166 (236)
Q Consensus 126 i~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~k 166 (236)
-..+..=+..+|...+..|-..|..+.+.|+.+++..-+..
T Consensus 33 A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~k~e 73 (85)
T TIGR02926 33 ARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKE 73 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555444444444444433
No 26
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=39.15 E-value=1.6e+02 Score=21.97 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Q psy12510 19 IKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEY 57 (236)
Q Consensus 19 I~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~y 57 (236)
|..+|...|..|...+..+=..|..+++..-+..|..+.
T Consensus 25 Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~ 63 (85)
T TIGR02926 25 RIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEA 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455444444444333
No 27
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=38.23 E-value=2.5e+02 Score=23.82 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=58.8
Q ss_pred HHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q psy12510 132 FIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKIIEE 211 (236)
Q Consensus 132 FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l~~l~~e 211 (236)
-+..+|+..+.+|-..|..+-+-++..++.+-+..+......=...++..+.-.. -..|.++.+-.++-
T Consensus 83 ~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~-----------~~l~~ei~~lav~~ 151 (184)
T CHL00019 83 ARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAI-----------NQVRQQVFQLALQR 151 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3667788888888888888888888888887777776666655555555554432 23455556666666
Q ss_pred HHHHHHhhccChhhHHHHHHhhc
Q psy12510 212 AKGRLSDITEDRTKYTEILEKLI 234 (236)
Q Consensus 212 Ak~kL~~~~~d~~~Yk~lL~~LI 234 (236)
|.+-|.+.. |++.-..++...|
T Consensus 152 A~kil~~~l-d~~~~~~lid~~i 173 (184)
T CHL00019 152 ALGTLNSCL-NNELHLRTINANI 173 (184)
T ss_pred HHHHHHhHc-CHHHHHHHHHHHH
Confidence 666666655 4444555554443
No 28
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=37.35 E-value=2.4e+02 Score=23.33 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=52.7
Q ss_pred HHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q psy12510 131 AFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKIIE 210 (236)
Q Consensus 131 ~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l~~l~~ 210 (236)
.-...+|+..|.+|-..|..+-.-++..++..-+..+....+.-..+++..+.-... ..|.++.+-.++
T Consensus 66 e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~-----------~L~~~i~~la~~ 134 (164)
T PRK14473 66 EAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLS-----------ELKSQIADLVTL 134 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 344566777777777777777777777777766666665555555555554433322 223444444444
Q ss_pred HHHHHHHhhccChhhHHHHHHhhc
Q psy12510 211 EAKGRLSDITEDRTKYTEILEKLI 234 (236)
Q Consensus 211 eAk~kL~~~~~d~~~Yk~lL~~LI 234 (236)
-|.+-|..-. |++....++...|
T Consensus 135 ~a~kil~~~l-~~~~~~~li~~~i 157 (164)
T PRK14473 135 TASRVLGAEL-QARGHDALIAESL 157 (164)
T ss_pred HHHHHHHhHc-CHHHHHHHHHHHH
Confidence 4544444433 5566777776654
No 29
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=35.82 E-value=2.7e+02 Score=23.48 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=43.1
Q ss_pred HHHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q psy12510 16 VAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTD 71 (236)
Q Consensus 16 v~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~ 71 (236)
..-+..+|+..|.+|-..|..+-+.++..++.+-+.....--++-...++..++-.
T Consensus 79 ~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a 134 (167)
T PRK08475 79 ALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKM 134 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999988888888777776666666666555443
No 30
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=35.37 E-value=2.5e+02 Score=22.92 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=29.0
Q ss_pred HHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHH
Q psy12510 131 AFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEE 170 (236)
Q Consensus 131 ~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~ 170 (236)
.=|..+|.++|++|-.+|+.+-.-.+..++...+..+..+
T Consensus 31 ~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~e 70 (108)
T COG2811 31 EQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEE 70 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888887777777776666555544
No 31
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=34.05 E-value=36 Score=27.10 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=12.4
Q ss_pred CChHHHHHHHHHHHH
Q psy12510 117 LDDAAVEKQIERMVA 131 (236)
Q Consensus 117 l~d~ev~~qi~~Mv~ 131 (236)
|||+++.+||+.+++
T Consensus 12 lt~~~i~~QI~yll~ 26 (99)
T cd03527 12 LTDEQIAKQIDYIIS 26 (99)
T ss_pred CCHHHHHHHHHHHHh
Confidence 458999999998764
No 32
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=30.42 E-value=3e+02 Score=22.42 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q psy12510 17 AFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYR 62 (236)
Q Consensus 17 ~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~k 62 (236)
.=|..+|.++|++|-.+|+.+-.-++..++...+..+..+=++=..
T Consensus 31 ~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~ 76 (108)
T COG2811 31 EQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILA 76 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999998888888888877776655444333
No 33
>PRK12705 hypothetical protein; Provisional
Probab=26.95 E-value=6.8e+02 Score=25.39 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhH----hHHHHHHHHHhhHHHHHHH-----------------HHHHHHHhHHHHHH
Q psy12510 120 AAVEKQIERMVAFIQTE----ADEKLDDIRRKIEEDYQIE-----------------RERVTRDGKASVDE 169 (236)
Q Consensus 120 ~ev~~qi~~Mv~FI~qE----A~EKA~EI~~kAeEEF~IE-----------------K~~lV~~ek~kI~~ 169 (236)
.+...+...|+..++.| |+.+|++|-+.|-+-|.-+ |++|+..|-.+|+.
T Consensus 153 ~~~~~e~~~~i~~~e~~~~~~a~~~A~~ii~~aiqr~a~~~~~e~tvs~v~lp~demkGriIGreGrNir~ 223 (508)
T PRK12705 153 AELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQRIASETASDLSVSVVPIPSDAMKGRIIGREGRNIRA 223 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhheeeeeecCChHhhccccCccchhHHH
Confidence 45555666666666655 5578889999999888654 77888888888875
No 34
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=24.33 E-value=5.1e+02 Score=23.10 Aligned_cols=104 Identities=16% Similarity=0.274 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHH
Q psy12510 124 KQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKED 203 (236)
Q Consensus 124 ~qi~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~ 203 (236)
+.+...+.-+..|..++-.++..-- ..| +...--..+-.+|..+|++-..++.-...-. ....+..-.+++..||.
T Consensus 5 ~d~d~~~~~~~~e~~~~E~e~~~l~-~k~--~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~-~~~~~~~i~~~~~erdq 80 (207)
T PF05010_consen 5 KDLDAAIKKVQEEVAEKEEEEQELK-KKY--EELHKENQEMRKIMEEYEKTIAQMIEEKQKQ-KELSEAEIQKLLKERDQ 80 (207)
T ss_pred HhHHHHHHHHHHHHHHhHHHHHHHH-HHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHhHHHHHHHHHhhHHH
Confidence 3455566666666554443333221 112 3333334567789999999888866554444 44456667789999999
Q ss_pred HHHHHHHHHHHHHHhhccChhhHHHHHHh
Q psy12510 204 SVGKIIEEAKGRLSDITEDRTKYTEILEK 232 (236)
Q Consensus 204 ~l~~l~~eAk~kL~~~~~d~~~Yk~lL~~ 232 (236)
+..+|- .....++++.+--.+++.++.|
T Consensus 81 ~~~dL~-s~E~sfsdl~~ryek~K~vi~~ 108 (207)
T PF05010_consen 81 AYADLN-SLEKSFSDLHKRYEKQKEVIEG 108 (207)
T ss_pred HHHHHH-HHHhhHHHHHHHHHHHHHHHHH
Confidence 888874 3444444444333344444433
No 35
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.39 E-value=5.3e+02 Score=22.54 Aligned_cols=54 Identities=7% Similarity=0.043 Sum_probs=35.0
Q ss_pred HHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q psy12510 18 FIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTD 71 (236)
Q Consensus 18 FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~ 71 (236)
-..++|..+|.+|...|.++-+.++..++..-+..+...-+.-...++.++.-.
T Consensus 107 ~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a 160 (205)
T PRK06231 107 QRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERREL 160 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888887777777777666655555555555554444443
No 36
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=21.43 E-value=4.9e+02 Score=21.79 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=46.5
Q ss_pred HHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q psy12510 133 IQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKIIEEA 212 (236)
Q Consensus 133 I~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l~~l~~eA 212 (236)
...+|+..+.+|...|..+-.-++..++..-...+...-+.-...++..+.-... .-|.++.+-.++-|
T Consensus 76 ~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~-----------el~~ei~~lA~~~a 144 (173)
T PRK13460 76 RLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALS-----------QLQNQIVEMTITIA 144 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3556667777777777777666666666665555554444444444433322211 12333333334444
Q ss_pred HHHHHhhccChhhHHHHHHhhc
Q psy12510 213 KGRLSDITEDRTKYTEILEKLI 234 (236)
Q Consensus 213 k~kL~~~~~d~~~Yk~lL~~LI 234 (236)
.+-|..-. |+.....++...|
T Consensus 145 ~kil~~~l-~~~~~~~lid~~i 165 (173)
T PRK13460 145 SKVLEKQL-KKEDYKAFIETEL 165 (173)
T ss_pred HHHHHHHC-CHHHHHHHHHHHH
Confidence 44444433 5555666665554
No 37
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=21.19 E-value=73 Score=28.49 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=28.2
Q ss_pred cccCCCchhhhccCChHHHHHHHHHHHHHHHhHhH
Q psy12510 104 DIFRPPPTLLGMALDDAAVEKQIERMVAFIQTEAD 138 (236)
Q Consensus 104 ~~~~~~~~~~~~~l~d~ev~~qi~~Mv~FI~qEA~ 138 (236)
-.||||+-|++..--|++|..=..+|+--...-|-
T Consensus 83 ~~~~~~~~~~~~iyr~d~v~~i~~k~~~il~~~al 117 (198)
T PRK15201 83 LMFRPCLYMLPHIYREDDVEEITRKMILILHKRAL 117 (198)
T ss_pred hhhchhHhhcchhhccccHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999888888754443343
No 38
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=20.98 E-value=5e+02 Score=21.73 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=63.8
Q ss_pred HHhhhcCCCcccccCCCchhhhccCChHHHHH----HHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHH
Q psy12510 93 FRSYLKLPNAADIFRPPPTLLGMALDDAAVEK----QIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVD 168 (236)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~d~ev~~----qi~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~ 168 (236)
|..|.-.|+-..++-.--+.+.-.+++++-.+ ++..=..=-..+|+.++.+|-..|..+=.. +.+.-+....
T Consensus 22 ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~----~~~e~~~~a~ 97 (161)
T COG0711 22 LLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQ----IAEEIKAEAE 97 (161)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 34444444444444444445555555544321 112222334457778888888888776554 5566666677
Q ss_pred HHHHHHhHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHH
Q psy12510 169 EEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGK 207 (236)
Q Consensus 169 ~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~aR~~~l~~ 207 (236)
.+-++..++...+-..+.+..+..-|..+-..-....+.
T Consensus 98 ~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~~~aek 136 (161)
T COG0711 98 EELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEK 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776676666666666555444433333
No 39
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=20.34 E-value=8.2e+02 Score=23.97 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=21.5
Q ss_pred HHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHH
Q psy12510 133 IQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVE 179 (236)
Q Consensus 133 I~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e 179 (236)
+..+|+.++.+|-..|.++=+-++..++.+-...+....+.-..+++
T Consensus 61 ~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie 107 (445)
T PRK13428 61 AVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQ 107 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444444444444333333333333
No 40
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=20.34 E-value=5.2e+02 Score=21.64 Aligned_cols=54 Identities=11% Similarity=0.170 Sum_probs=34.5
Q ss_pred HHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q psy12510 18 FIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTD 71 (236)
Q Consensus 18 FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~ 71 (236)
-...+|+..+.+|...|..+-.-++..++.+-+..+...-+.-...++.++.-.
T Consensus 75 ~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a 128 (173)
T PRK13460 75 ARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKA 128 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777776666666555555555555444433
Done!