Query psy12510
Match_columns 236
No_of_seqs 210 out of 402
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:09:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 2E-32 6.9E-37 238.3 16.0 125 112-236 3-127 (233)
2 4efa_E V-type proton ATPase su 99.9 2.4E-23 8.1E-28 181.1 13.3 90 1-90 6-95 (233)
3 2dm9_A V-type ATP synthase sub 99.0 8E-11 2.7E-15 97.0 2.3 102 121-235 10-111 (198)
4 3v6i_A V-type ATP synthase sub 98.9 1.5E-08 5E-13 85.0 13.7 103 129-236 3-109 (187)
5 2dm9_A V-type ATP synthase sub 97.6 1.3E-05 4.5E-10 65.6 0.6 75 7-92 10-84 (198)
6 3v6i_A V-type ATP synthase sub 94.9 0.3 1E-05 40.3 11.2 73 14-90 2-78 (187)
7 4e29_A Chimeric WZZB chain len 70.1 46 0.0016 29.2 10.9 101 91-192 56-169 (248)
8 2kk7_A V-type ATP synthase sub 38.2 44 0.0015 22.3 4.2 37 126-166 8-44 (52)
9 2kk7_A V-type ATP synthase sub 32.3 61 0.0021 21.6 4.1 37 12-52 8-44 (52)
10 3m91_A Proteasome-associated A 28.3 94 0.0032 21.0 4.5 29 192-220 15-43 (51)
11 3b8o_A Lipopolysaccharide bios 24.2 3.4E+02 0.012 23.2 9.1 83 111-194 107-190 (265)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=2e-32 Score=238.33 Aligned_cols=125 Identities=31% Similarity=0.543 Sum_probs=122.0
Q ss_pred hhhccCChHHHHHHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhc
Q psy12510 112 LLGMALDDAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKS 191 (236)
Q Consensus 112 ~~~~~l~d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N 191 (236)
+..+||||++|++||+||++||++||++||+||..+|++||++||+++|++++.+|++.|++++++++++++|..|+..|
T Consensus 3 s~~~al~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~ 82 (233)
T 4efa_E 3 SAITALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIAN 82 (233)
T ss_dssp CCBCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHhhccC
Q psy12510 192 EGRMNVMRVKEDSVGKIIEEAKGRLSDITEDRTKYTEILEKLIFQ 236 (236)
Q Consensus 192 ~~RLkvL~aR~~~l~~l~~eAk~kL~~~~~d~~~Yk~lL~~LIlQ 236 (236)
++|+++|.+|+++|+++|++|+++|..+++|+..|+.+|.+||+|
T Consensus 83 ~aR~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~e 127 (233)
T 4efa_E 83 KMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVE 127 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999975
No 2
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=99.90 E-value=2.4e-23 Score=181.11 Aligned_cols=90 Identities=27% Similarity=0.492 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhHH
Q psy12510 1 MALDDAAVEKQIERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGR 80 (236)
Q Consensus 1 ~~l~d~~v~~qi~~Mv~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~R 80 (236)
+||||++|++||+||++||.+||++||+||..+|++||++||+++|++++.+|+++|++++++++++++|..|+..|++|
T Consensus 6 ~al~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR 85 (233)
T 4efa_E 6 TALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMR 85 (233)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhh
Q psy12510 81 MNVMRKLCDK 90 (236)
Q Consensus 81 LkvL~~r~~~ 90 (236)
+++|.+|.++
T Consensus 86 ~~vL~ar~e~ 95 (233)
T 4efa_E 86 LKVLSAREQS 95 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 3
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.01 E-value=8e-11 Score=97.04 Aligned_cols=102 Identities=25% Similarity=0.433 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhchHHHHHHHH
Q psy12510 121 AVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRV 200 (236)
Q Consensus 121 ev~~qi~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~a 200 (236)
++-.+-+.|.+||.+||+++|++|...|.++|+.++..++++.. ++++..+++..|+..|+.|..++.+
T Consensus 10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~-----------~e~~~~~~~~~s~~~~~~r~~~l~~ 78 (198)
T 2dm9_A 10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAK-----------TQAELEKQRIIANARLEVRRKRLAI 78 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999884 4566788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHHHHHhhcc
Q psy12510 201 KEDSVGKIIEEAKGRLSDITEDRTKYTEILEKLIF 235 (236)
Q Consensus 201 R~~~l~~l~~eAk~kL~~~~~d~~~Yk~lL~~LIl 235 (236)
|+++++.+++.|.+.|..++ ++.|+.+|.+||.
T Consensus 79 ~~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~ 111 (198)
T 2dm9_A 79 QEEIISSVLEEVKRRLETMS--EDEYFESVKALLK 111 (198)
T ss_dssp --CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHH
Confidence 99999999999999999954 5679999999985
No 4
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=98.94 E-value=1.5e-08 Score=85.01 Aligned_cols=103 Identities=14% Similarity=0.244 Sum_probs=81.4
Q ss_pred HHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHH----HHHHhhhhhhhchHHHHHHHHHHHH
Q psy12510 129 MVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVE----LRHRTDCSNIKSEGRMNVMRVKEDS 204 (236)
Q Consensus 129 Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e----~~kkI~~S~~~N~~RLkvL~aR~~~ 204 (236)
+.+-|+.||+.+|.+|-..|.++ -..|+..-+......++...+.++ .......|+.-+..|.++|.+|+++
T Consensus 3 ~~~~l~~eA~~~a~~I~~eA~~~----a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~el 78 (187)
T 3v6i_A 3 LEAILSQEVEAEIQALLQEAEAK----AEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEV 78 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888887777665 344777766666666665554443 3445668999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHhhccC
Q psy12510 205 VGKIIEEAKGRLSDITEDRTKYTEILEKLIFQ 236 (236)
Q Consensus 205 l~~l~~eAk~kL~~~~~d~~~Yk~lL~~LIlQ 236 (236)
++++|++|+.+|..++.| ..|+.+|.+||+|
T Consensus 79 i~~v~~~a~~~L~~~~~~-~~Y~~~L~~Li~e 109 (187)
T 3v6i_A 79 LEEVRRRVREALEALPQK-PEWPEVVRKLALE 109 (187)
T ss_dssp HHHHHHHHHHHHHHGGGS-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCC-ccHHHHHHHHHHH
Confidence 999999999999999998 5699999999964
No 5
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=97.57 E-value=1.3e-05 Score=65.65 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=2.6
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhHHHHHHHh
Q psy12510 7 AVEKQIERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRK 86 (236)
Q Consensus 7 ~v~~qi~~Mv~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RLkvL~~ 86 (236)
.+-.+-+.|.+||.+||.++|.+|...|.++|+.|+..++++.. ++++..+++..|+..|+.|..++..
T Consensus 10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~-----------~e~~~~~~~~~s~~~~~~r~~~l~~ 78 (198)
T 2dm9_A 10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAK-----------TQAELEKQRIIANARLEVRRKRLAI 78 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999884 5577788899999999999999999
Q ss_pred hhhhhh
Q psy12510 87 LCDKST 92 (236)
Q Consensus 87 r~~~~~ 92 (236)
|.++..
T Consensus 79 ~~ev~~ 84 (198)
T 2dm9_A 79 QEEIIS 84 (198)
T ss_dssp --CHHH
T ss_pred HHHHHH
Confidence 999843
No 6
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=94.91 E-value=0.3 Score=40.25 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=55.2
Q ss_pred HHHHHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHH----HHHHhHhhhhhhhHHHHHHHhhhh
Q psy12510 14 RMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVE----LRHRTDCSNIKSEGRMNVMRKLCD 89 (236)
Q Consensus 14 ~Mv~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~kI~~~yekK~kq~e----~~kkI~~S~~~N~~RLkvL~~r~~ 89 (236)
++.+-|+.||+.+|.+|-..|.++ -..|+..-+......++...+.++ .......|+.-+++|.++|.+|.+
T Consensus 2 ~~~~~l~~eA~~~a~~I~~eA~~~----a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e 77 (187)
T 3v6i_A 2 KLEAILSQEVEAEIQALLQEAEAK----AEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE 77 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888877764 566777777666666666555444 445667999999999999999999
Q ss_pred h
Q psy12510 90 K 90 (236)
Q Consensus 90 ~ 90 (236)
+
T Consensus 78 l 78 (187)
T 3v6i_A 78 V 78 (187)
T ss_dssp H
T ss_pred H
Confidence 8
No 7
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=70.08 E-value=46 Score=29.16 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=71.4
Q ss_pred hhHHhhhc------CCCcccccCC------CchhhhccCChHHHHHHHHHHHHHHHhHhHHH-HHHHHHhhHHHHHHHHH
Q psy12510 91 STFRSYLK------LPNAADIFRP------PPTLLGMALDDAAVEKQIERMVAFIQTEADEK-LDDIRRKIEEDYQIERE 157 (236)
Q Consensus 91 ~~~~~~~~------~~~~~~~~~~------~~~~~~~~l~d~ev~~qi~~Mv~FI~qEA~EK-A~EI~~kAeEEF~IEK~ 157 (236)
++|+++.- .|++-.|..| +.++-..+-|+.+.++.+++.|+|+.+.+..- -.+|...-...-.-.+
T Consensus 56 ~~~~a~~~~~~~~~~~~kl~I~~~~k~~~~~~~LSfsA~ta~~Aq~lL~~YI~fv~~~v~~el~~~l~~~i~~r~~~l~- 134 (248)
T 4e29_A 56 SAFSALAETLDNQEEPEKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELERDLKDNIALGRKNLQ- 134 (248)
T ss_dssp HHHHHHHHHHHSSSSCCEEEEEECC-----CEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhhccCceeEEecCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 56666654 6887788765 34455588899999999999999999887643 3355544443322222
Q ss_pred HHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhhhch
Q psy12510 158 RVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSE 192 (236)
Q Consensus 158 ~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~ 192 (236)
.-+...+......++.++..++-.-+|+.+.-+++
T Consensus 135 ~ql~~~~~~ak~qr~~rI~rL~~AL~IA~aaGI~k 169 (248)
T 4e29_A 135 DSLRTQEVVAQEQKDLRIRQIEEALRYADEAKITQ 169 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33455667788889999999999999998766555
No 8
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=38.19 E-value=44 Score=22.34 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=26.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHH
Q psy12510 126 IERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKAS 166 (236)
Q Consensus 126 i~~Mv~FI~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~k 166 (236)
|..++.=|..+|+.+|..|-..|..+-+ .++...+..
T Consensus 8 le~i~~kI~~eA~~eA~~Il~eA~~eA~----~Ii~eA~~~ 44 (52)
T 2kk7_A 8 VDKIKSKILDDAKAEANKIISEAEAEKA----KILEKAKEE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 6677888888999999999888877633 355444433
No 9
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=32.31 E-value=61 Score=21.62 Aligned_cols=37 Identities=14% Similarity=0.338 Sum_probs=26.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Q psy12510 12 IERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKAS 52 (236)
Q Consensus 12 i~~Mv~FI~qEA~EKa~EI~~kA~eef~iEK~~lV~~ek~k 52 (236)
|..++.=|..+|+.+|..|-..|..+ -..++..-+..
T Consensus 8 le~i~~kI~~eA~~eA~~Il~eA~~e----A~~Ii~eA~~~ 44 (52)
T 2kk7_A 8 VDKIKSKILDDAKAEANKIISEAEAE----KAKILEKAKEE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 55677788899999999998888765 34455444433
No 10
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.33 E-value=94 Score=20.97 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy12510 192 EGRMNVMRVKEDSVGKIIEEAKGRLSDIT 220 (236)
Q Consensus 192 ~~RLkvL~aR~~~l~~l~~eAk~kL~~~~ 220 (236)
+.++.-|.+|+.-|...+.+|+.+|..+.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999998764
No 11
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=24.19 E-value=3.4e+02 Score=23.25 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=50.9
Q ss_pred hhhhccCChHHHHHHHHHHHHHHHhHhHHHH-HHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHhhhhhh
Q psy12510 111 TLLGMALDDAAVEKQIERMVAFIQTEADEKL-DDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNI 189 (236)
Q Consensus 111 ~~~~~~l~d~ev~~qi~~Mv~FI~qEA~EKA-~EI~~kAeEEF~IEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~ 189 (236)
++-..+-|+.+.++-+.+-|+|+-+.+..-. .+|...-...=...+. -+..+.......++.++..++-.-+|+.+.-
T Consensus 107 ~ls~~a~t~~~A~~lL~~YI~~v~~~~~~~l~~~l~~~~~~r~~~l~~-qi~~~~~~ak~~~~~~i~rl~~AL~IA~aag 185 (265)
T 3b8o_A 107 SVKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKA-QVKRQEEVAKAIYDRRMNSIEQALKIAEQHN 185 (265)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5555889999999999999999999988666 5666555532222233 3455566777889999999999999987766
Q ss_pred hchHH
Q psy12510 190 KSEGR 194 (236)
Q Consensus 190 ~N~~R 194 (236)
+++--
T Consensus 186 I~kP~ 190 (265)
T 3b8o_A 186 ISRSA 190 (265)
T ss_dssp -----
T ss_pred CCCCC
Confidence 64443
Done!