Query psy12510
Match_columns 236
No_of_seqs 210 out of 402
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 21:09:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12510.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12510hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bxni_ d.73.1.1 (I:) Ribulose 33.8 11 0.00084 28.3 2.7 15 117-131 14-28 (129)
2 d1rbli_ d.73.1.1 (I:) Ribulose 25.1 21 0.0015 26.0 2.7 16 116-131 19-34 (109)
3 d1bwvs_ d.73.1.1 (S:) Ribulose 24.3 21 0.0015 27.1 2.6 15 117-131 14-28 (138)
4 d1l2pa_ f.23.21.1 (A:) F1F0 AT 14.8 1.4E+02 0.011 18.9 6.5 40 133-172 14-53 (61)
5 d1ldja1 a.4.5.34 (A:687-776) A 12.9 87 0.0063 21.3 3.6 50 186-235 21-72 (90)
6 d2azeb1 e.63.1.2 (B:201-301) T 12.2 1.1E+02 0.0083 21.2 4.1 30 195-224 10-39 (101)
7 d1svdm1 d.73.1.1 (M:3-110) Rib 11.4 63 0.0046 23.2 2.4 16 116-131 19-34 (108)
8 d351ca_ a.3.1.1 (A:) Cytochrom 10.8 1.1E+02 0.0079 19.2 3.4 40 90-135 41-80 (82)
9 d1wdds_ d.73.1.1 (S:) Ribulose 10.7 68 0.0049 23.5 2.4 16 116-131 20-35 (122)
10 d1ynra1 a.3.1.1 (A:1-80) Cytoc 9.9 1.3E+02 0.0097 18.7 3.6 38 91-135 40-78 (80)
No 1
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=33.80 E-value=11 Score=28.26 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.6
Q ss_pred CChHHHHHHHHHHHH
Q psy12510 117 LDDAAVEKQIERMVA 131 (236)
Q Consensus 117 l~d~ev~~qi~~Mv~ 131 (236)
|||+|+.+||..|++
T Consensus 14 Ltd~~I~~QV~yll~ 28 (129)
T d1bxni_ 14 LTDEQITKQLEYCLN 28 (129)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 569999999998875
No 2
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=25.07 E-value=21 Score=26.00 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.0
Q ss_pred cCChHHHHHHHHHHHH
Q psy12510 116 ALDDAAVEKQIERMVA 131 (236)
Q Consensus 116 ~l~d~ev~~qi~~Mv~ 131 (236)
.|||+++.+||..+++
T Consensus 19 ~Ltd~~I~~QV~yll~ 34 (109)
T d1rbli_ 19 PLSDRQIAAQIEYMIE 34 (109)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3569999999998874
No 3
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=24.35 E-value=21 Score=27.10 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=12.4
Q ss_pred CChHHHHHHHHHHHH
Q psy12510 117 LDDAAVEKQIERMVA 131 (236)
Q Consensus 117 l~d~ev~~qi~~Mv~ 131 (236)
|||+++.+||..|++
T Consensus 14 LtdeqI~~QV~yll~ 28 (138)
T d1bwvs_ 14 LTDEQIKKQIDYMIS 28 (138)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc
Confidence 569999999998864
No 4
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=14.85 E-value=1.4e+02 Score=18.92 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=22.0
Q ss_pred HHhHhHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy12510 133 IQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYA 172 (236)
Q Consensus 133 I~qEA~EKA~EI~~kAeEEF~IEK~~lV~~ek~kI~~~ye 172 (236)
|..+|+.-+..|-.-|-..=..|..+|+.+-+..|..+..
T Consensus 14 Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~ 53 (61)
T d1l2pa_ 14 IIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555666666666666665544
No 5
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.91 E-value=87 Score=21.28 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=39.8
Q ss_pred hhhhhchHHHHHHHHHHHH-HHHHHHHHHHHHHh-hccChhhHHHHHHhhcc
Q psy12510 186 CSNIKSEGRMNVMRVKEDS-VGKIIEEAKGRLSD-ITEDRTKYTEILEKLIF 235 (236)
Q Consensus 186 ~S~~~N~~RLkvL~aR~~~-l~~l~~eAk~kL~~-~~~d~~~Yk~lL~~LIl 235 (236)
+...++.+=.++|++|-.+ .++|+.++...|.. +..+....+.-+..||-
T Consensus 21 R~~~i~AaIVRIMK~~k~l~h~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIe 72 (90)
T d1ldja1 21 RKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIE 72 (90)
T ss_dssp HHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 6677888888999988654 56788888888876 77777789999999984
No 6
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.17 E-value=1.1e+02 Score=21.24 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChh
Q psy12510 195 MNVMRVKEDSVGKIIEEAKGRLSDITEDRT 224 (236)
Q Consensus 195 LkvL~aR~~~l~~l~~eAk~kL~~~~~d~~ 224 (236)
+.-|.+++..|+.+...+..+|..++.|+.
T Consensus 10 l~~L~~~E~~LD~li~~~~~~L~~lted~~ 39 (101)
T d2azeb1 10 LRQLQESEQQLDHLMNICTTQLRLLSEDTD 39 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 567899999999999999999999998864
No 7
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=11.43 E-value=63 Score=23.18 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=12.9
Q ss_pred cCChHHHHHHHHHHHH
Q psy12510 116 ALDDAAVEKQIERMVA 131 (236)
Q Consensus 116 ~l~d~ev~~qi~~Mv~ 131 (236)
+|||+++.+||..+++
T Consensus 19 ~Ltde~I~~QV~yll~ 34 (108)
T d1svdm1 19 PMNAERIRAQIKYAIA 34 (108)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3578999999998764
No 8
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.84 E-value=1.1e+02 Score=19.17 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=23.6
Q ss_pred hhhHHhhhcCCCcccccCCCchhhhccCChHHHHHHHHHHHHHHHh
Q psy12510 90 KSTFRSYLKLPNAADIFRPPPTLLGMALDDAAVEKQIERMVAFIQT 135 (236)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ev~~qi~~Mv~FI~q 135 (236)
...+..+++-|.... .++..|-+..|||+| |..+++||..
T Consensus 41 ~~~l~~~i~~~~~~~--~~~~~MP~~~lsd~e----i~~la~Yi~S 80 (82)
T d351ca_ 41 EAELAQRIKNGSQGV--WGPIPMPPNAVSDDE----AQTLAKWVLS 80 (82)
T ss_dssp HHHHHHHHHHCBCSS--SSSSCBCCCSCCHHH----HHHHHHHHHT
T ss_pred HHHHHHHHHcccccc--cccccccccCCCHHH----HHHHHHHHHh
Confidence 456666666664332 122224445799875 5688899863
No 9
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=10.74 E-value=68 Score=23.53 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=13.0
Q ss_pred cCChHHHHHHHHHHHH
Q psy12510 116 ALDDAAVEKQIERMVA 131 (236)
Q Consensus 116 ~l~d~ev~~qi~~Mv~ 131 (236)
+|||+++.+||.-|++
T Consensus 20 ~ltd~qI~~QI~yll~ 35 (122)
T d1wdds_ 20 PLTVEDLLKQIEYLLR 35 (122)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3668999999998764
No 10
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}
Probab=9.94 E-value=1.3e+02 Score=18.73 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=22.2
Q ss_pred hhHHhhhcCCCcccc-cCCCchhhhccCChHHHHHHHHHHHHHHHh
Q psy12510 91 STFRSYLKLPNAADI-FRPPPTLLGMALDDAAVEKQIERMVAFIQT 135 (236)
Q Consensus 91 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~d~ev~~qi~~Mv~FI~q 135 (236)
..+..+++-|..... ..|+| ...|||+| |..|++||..
T Consensus 40 ~~l~~~i~~p~~~~~~~~~~~---~~~lsd~e----i~~l~~yi~s 78 (80)
T d1ynra1 40 DYLAGKIKKGGSGVWGSVPMP---PQNVTDAE----AKQLAQWILS 78 (80)
T ss_dssp HHHHHHHHHCBCSSSCSSCBC---CCSCCHHH----HHHHHHHHHT
T ss_pred HHHHHHHHccccccccccccc---cccCCHHH----HHHHHHHHHH
Confidence 445666666654321 22322 23688875 6689999863
Done!