RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12510
(236 letters)
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 73.1 bits (180), Expect = 5e-16
Identities = 38/105 (36%), Positives = 70/105 (66%)
Query: 132 FIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKS 191
FI+ EA+EK ++IR + EE+++IE+ + + ++E Y KK +Q E+ + SN K+
Sbjct: 1 FIRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKN 60
Query: 192 EGRMNVMRVKEDSVGKIIEEAKGRLSDITEDRTKYTEILEKLIFQ 236
E R+ V+ +E+ + + EEAK RL++++ED+ +Y ++L+ LI Q
Sbjct: 61 EARLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDLLKDLIKQ 105
Score = 45.0 bits (107), Expect = 6e-06
Identities = 24/69 (34%), Positives = 43/69 (62%)
Query: 18 FIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKS 77
FI+ EA+EK ++IR + EE+++IE+ + + ++E Y KK +Q E+ + SN K+
Sbjct: 1 FIRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKN 60
Query: 78 EGRMNVMRK 86
E R+ V+
Sbjct: 61 EARLKVLNA 69
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 42.7 bits (101), Expect = 4e-05
Identities = 21/102 (20%), Positives = 51/102 (50%)
Query: 126 IERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTD 185
+E+++ I EA+E+ ++I + E+ + +E R+ + +++E K ++ E +
Sbjct: 4 LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRI 63
Query: 186 CSNIKSEGRMNVMRVKEDSVGKIIEEAKGRLSDITEDRTKYT 227
S+ E R ++ KE+ + + E + +L +I D +
Sbjct: 64 ISSALLEARRKLLEAKEEILESVFEAVEEKLRNIASDPEYES 105
Score = 32.3 bits (74), Expect = 0.13
Identities = 15/69 (21%), Positives = 36/69 (52%)
Query: 12 IERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTD 71
+E+++ I EA+E+ ++I + E+ + +E R+ + +++E K ++ E +
Sbjct: 4 LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRI 63
Query: 72 CSNIKSEGR 80
S+ E R
Sbjct: 64 ISSALLEAR 72
>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional.
Length = 198
Score = 36.3 bits (84), Expect = 0.005
Identities = 25/102 (24%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 133 IQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSE 192
I EA++K++ I + +++ + +E + ++ + K Q EL + +N K E
Sbjct: 11 INREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLE 70
Query: 193 GRMNVMRVKEDSVGKIIEEAKGRLSDITEDRTKYTEILEKLI 234
R + V+E+ + +++E + RL+++ ED +Y E L+ L
Sbjct: 71 VRRKRLAVQEELISEVLEAVRERLAELPED--EYFETLKALT 110
>gnl|CDD|112795 pfam03996, Hema_esterase, Hemagglutinin esterase.
Length = 377
Score = 31.0 bits (70), Expect = 0.52
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 69 RTDCSNIKSEGRMNVMRKLCDKSTFRSYLKLPNAADIFRPP 109
R+DCSN ++ K K + +S L + +FR
Sbjct: 38 RSDCSNSAFPRSSDMDLKPALKFSGKSSSSLGLS--LFRSF 76
>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl
methyltransferase. This family of plant
methyltransferases contains enzymes that act on a
variety of substrates including salicylic acid, jasmonic
acid and 7-Methylxanthine. Caffeine is synthesised
through sequential three-step methylation of xanthine
derivatives at positions 7-N, 3-N, and 1-N. The protein
7-methylxanthine methyltransferase (designated as
CaMXMT) catalyzes the second step to produce
theobromine.
Length = 331
Score = 29.2 bits (66), Expect = 2.1
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 25/91 (27%)
Query: 111 TLLGMALDDAAVEKQIERMVAFIQTEADEKLD------------DIRRKIEED--YQIER 156
LLG AL+D E IE EKLD +++ IE++ + IER
Sbjct: 198 DLLGDALNDLVSEGLIEE----------EKLDSFNIPIYAPSPEEVKEIIEKEGSFTIER 247
Query: 157 ERVTRDGKASVD-EEYAKKYRQVELRHRTDC 186
+ + V +E + + + R
Sbjct: 248 LEIIKHPNGEVPWDESDSEDKVEDGRFVASS 278
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 28.5 bits (64), Expect = 3.5
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 4 DDAAVEKQIERMVAF-----IKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDE 55
D E I+RM K ++ L+++ R+I+ED + R + K +
Sbjct: 558 DPEVFEGLIKRMSWKFIEIEFKEISEVDLEELLREIDEDRERVRRVLEGKLKEETKD 614
>gnl|CDD|177553 PHA03185, PHA03185, UL14 tegument protein; Provisional.
Length = 214
Score = 27.3 bits (60), Expect = 6.3
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 150 EDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKII 209
E Y+ E R+ R+G + D + + + HR + +KS R+ ++R V +
Sbjct: 22 EVYREETLRLHREGVGTQDPRFVGAFMAAKAAHRELEARLKSRARLEMLRQHAACVKIRV 81
Query: 210 EEAKGRLSDITEDR 223
EE R + R
Sbjct: 82 EEQAERRDFLIAHR 95
>gnl|CDD|222566 pfam14134, DUF4301, Domain of unknown function (DUF4301). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 505 and 516 amino
acids in length.
Length = 513
Score = 27.5 bits (62), Expect = 7.0
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 116 ALDDAAV-EKQIERMVAFIQTEADEKLDDIRRKIEEDYQIER 156
LD V E+++E +V F++ E KL + K ++ IE
Sbjct: 327 LLDKGKVSEEELEEIVDFLEDELCIKLPEDFEKFSDEELIEY 368
>gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid
dehydrogenases (17beta-HSDs) types -1, -3, and -12,
-like, classical (c) SDRs. This subgroup includes
various 17-beta-hydroxysteroid dehydrogenases and
3-ketoacyl-CoA reductase, these are members of the SDR
family, and contain the canonical active site tetrad
and glycine-rich NAD-binding motif of the classical
SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD
type 12, encoded by HSD17B12) acts in fatty acid
elongation; 17beta- hydroxysteroid dehydrogenases are
isozymes that catalyze activation and inactivation of
estrogen and androgens, and include members of the SDR
family. 17beta-estradiol dehydrogenase (aka 17beta-HSD
type 1, encoded by HSD17B1) converts estrone to
estradiol. Estradiol is the predominant female sex
hormone. 17beta-HSD type 3 (aka testosterone
17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses
the reduction of androstenedione to testosterone, it
also accepts estrogens as substrates. This subgroup
also contains a putative steroid dehydrogenase let-767
from Caenorhabditis elegans, mutation in which results
in hypersensitivity to cholesterol limitation. SDRs
are a functionally diverse family of oxidoreductases
that have a single domain with a structurally conserved
Rossmann fold (alpha/beta folding pattern with a
central beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRS are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes have a
3-glycine N-terminal NAD(P)(H)-binding pattern
(typically, TGxxxGxG in classical SDRs and TGxxGxxG in
extended SDRs), while substrate binding is in the
C-terminal region. A critical catalytic Tyr residue
(Tyr-151, human 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering), is often found in a conserved
YXXXK pattern. In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) or
additional Ser, contributing to the active site.
Substrates for these enzymes include sugars, steroids,
alcohols, and aromatic compounds. The standard reaction
mechanism is a proton relay involving the conserved Tyr
and Lys, as well as Asn (or Ser). Some SDR family
members, including 17 beta-hydroxysteroid dehydrogenase
contain an additional helix-turn-helix motif that is
not generally found among SDRs.
Length = 239
Score = 27.2 bits (61), Expect = 7.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 25 EKLDDIRRKIEEDYQIE 41
EKLD + ++IEE Y +E
Sbjct: 36 EKLDAVAKEIEEKYGVE 52
Score = 27.2 bits (61), Expect = 7.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 139 EKLDDIRRKIEEDYQIE 155
EKLD + ++IEE Y +E
Sbjct: 36 EKLDAVAKEIEEKYGVE 52
>gnl|CDD|217072 pfam02503, PP_kinase, Polyphosphate kinase middle domain.
Polyphosphate kinase (Ppk) catalyzes the formation of
polyphosphate from ATP, with chain lengths of up to a
thousand or more orthophosphate molecules.
Length = 204
Score = 27.1 bits (61), Expect = 8.1
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 33 KIEEDYQIERERVTRDGKASVDEEYAKKYRQV---ELRHR 69
++ Y RVTRD +DEE A+ + EL+ R
Sbjct: 98 EVLGAYAF---RVTRDADLEIDEEEAEDLLEAIEKELKKR 134
Score = 27.1 bits (61), Expect = 8.1
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 147 KIEEDYQIERERVTRDGKASVDEEYAKKYRQV---ELRHR 183
++ Y RVTRD +DEE A+ + EL+ R
Sbjct: 98 EVLGAYAF---RVTRDADLEIDEEEAEDLLEAIEKELKKR 134
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome partitioning].
Length = 1480
Score = 27.5 bits (61), Expect = 8.9
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 125 QIERMVAFIQTEADEKLDDIRRKIEEDYQIERERV 159
Q+E+ + F + E D L RK+E DY RE+V
Sbjct: 1077 QLEKQLTFCEAEMD-NLTRKLRKLERDYFEMREQV 1110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.356
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,505,776
Number of extensions: 1243897
Number of successful extensions: 2120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2076
Number of HSP's successfully gapped: 173
Length of query: 236
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 142
Effective length of database: 6,768,326
Effective search space: 961102292
Effective search space used: 961102292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)