RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12510
(236 letters)
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 60.0 bits (145), Expect = 2e-11
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 125 QIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRT 184
E ++ I EA+ K++ I + + + +E R+ +A + + Q EL +
Sbjct: 3 GAELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQR 62
Query: 185 DCSNIKSEGRMNVMRVKEDSVGKIIEEAKGRLSDITEDRTKYTEILEKLIFQ 236
+N + E R + ++E+ + ++EE K RL ++ED +Y E ++ L+ +
Sbjct: 63 IIANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSED--EYFESVKALLKE 112
Score = 42.3 bits (99), Expect = 3e-05
Identities = 15/79 (18%), Positives = 33/79 (41%)
Query: 11 QIERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRT 70
E ++ I EA+ K++ I + + + +E R+ +A + + Q EL +
Sbjct: 3 GAELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQR 62
Query: 71 DCSNIKSEGRMNVMRKLCD 89
+N + E R + +
Sbjct: 63 IIANARLEVRRKRLAIQEE 81
>2kz9_A V-type proton ATPase subunit E; V-ATPase, proton transport; NMR
{Saccharomyces cerevisiae}
Length = 69
Score = 56.0 bits (135), Expect = 4e-11
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 1 MALDDAAVEKQIERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKK 60
AL V ++ +M AFI+ EA+EK +I+ K +++Y+IE+ + R+ ++D + K
Sbjct: 6 TALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSK 65
Query: 61 YRQ 63
++
Sbjct: 66 LKK 68
Score = 55.2 bits (133), Expect = 9e-11
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 115 MALDDAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKK 174
AL V ++ +M AFI+ EA+EK +I+ K +++Y+IE+ + R+ ++D + K
Sbjct: 6 TALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSK 65
Query: 175 YRQ 177
++
Sbjct: 66 LKK 68
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 47.2 bits (112), Expect = 7e-07
Identities = 15/118 (12%), Positives = 44/118 (37%), Gaps = 12/118 (10%)
Query: 119 DAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQV 178
+A + +++E + + EA+ K + ++R+ EE + + Q
Sbjct: 4 EAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQ-----------ARERALEAQY 52
Query: 179 ELRHRTDCSNIKSEGRMNVMRVKEDSVGKIIEEAKGRLSDITEDRTKYTEILEKLIFQ 236
R S + + + + + ++ + L + + ++ E++ KL +
Sbjct: 53 RAALRRAESAGELLVATARTQARGEVLEEVRRRVREALEALPQKP-EWPEVVRKLALE 109
Score = 38.4 bits (89), Expect = 8e-04
Identities = 16/86 (18%), Positives = 37/86 (43%)
Query: 5 DAAVEKQIERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQV 64
+A + +++E + + EA+ K + ++R+ EE + + R +A +
Sbjct: 4 EAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAG 63
Query: 65 ELRHRTDCSNIKSEGRMNVMRKLCDK 90
EL T + + E V R++ +
Sbjct: 64 ELLVATARTQARGEVLEEVRRRVREA 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 1e-04
Identities = 32/208 (15%), Positives = 67/208 (32%), Gaps = 53/208 (25%)
Query: 18 FIKT--EADEKL--DD---------------IRRKIEEDYQIERERVTRDGKASVDEEYA 58
F K E E DD + +E + ++V + E +
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL---NLCLTE-FE 92
Query: 59 KKYRQVELR----HRTDCSNIKSEGRMNVMRKLCDKSTFRSYLKLPNAADIFRPPPTLLG 114
Y L H + + E +++ K ++Y+ A RP
Sbjct: 93 NCY----LEGNDIH-ALAAKLLQENDTTLVKT---KELIKNYITARIMAK--RPFDKKSN 142
Query: 115 MALDDAAVEKQIERMVAFI-QTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDE--EY 171
AL A E + + F Q D+ +++ R + + Y V + ++
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-RDLYQTYH-----------VLVGDLIKF 190
Query: 172 AKKYRQVELRHRTDCSNIKSEGRMNVMR 199
+ + +R D + ++G +N++
Sbjct: 191 SAETLSELIRTTLDAEKVFTQG-LNILE 217
Score = 33.9 bits (77), Expect = 0.043
Identities = 39/290 (13%), Positives = 83/290 (28%), Gaps = 115/290 (39%)
Query: 1 MALD---DAAVEKQI-ERMVAFIKTEADEKLDDI----------------RRKIEEDYQI 40
M +D + + + R K + DI ++I E+Y
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 41 ERERVTRDGKAS---VDEEYAKKYRQVELRH------RTDCSN---------------IK 76
DGK + +E + R T +K
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT--QFTQPALTLMEKAAFEDLK 1748
Query: 77 SEGRMNVMRKLCDKSTFR--S---Y---------LKLPNAADI--FRPPPTLLGMALDDA 120
S+G + +TF S Y + + + ++ +R GM + A
Sbjct: 1749 SKGLIP------ADATFAGHSLGEYAALASLADVMSIESLVEVVFYR------GMTMQVA 1796
Query: 121 AVEKQIER----MVA-----FIQTEADEKLDDIRRKIEED---------Y-----QIERE 157
++ R M+A + + E L + ++ + Y Q
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY--- 1853
Query: 158 RVTRDG-KASVDE--EYAK--KYRQVELRHRTDCSNIKSEGRMNVMRVKE 202
V G ++D K +++++ I+ + +++ V+
Sbjct: 1854 -VA-AGDLRALDTVTNVLNFIKLQKIDI--------IELQKSLSLEEVEG 1893
Score = 30.4 bits (68), Expect = 0.55
Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 35/119 (29%)
Query: 114 GMALD---DAAVEKQI-ERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDG-KASVD 168
GM +D + + + R AD ++ Y + +
Sbjct: 1630 GMGMDLYKTSKAAQDVWNR--------ADNHF-------KDTYGFSILDIVINNPVNLTI 1674
Query: 169 EEYAKKYRQVELRHRTDCSNIKSEGRMNVMRVKEDSVGKIIEEAKGRLSDITEDRTKYT 227
+K +++ R N + +++ + + +I E T YT
Sbjct: 1675 HFGGEKGKRI---------------RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 7e-04
Identities = 32/192 (16%), Positives = 68/192 (35%), Gaps = 40/192 (20%)
Query: 8 VEKQIERMVAFI-------KTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKK 60
VEKQ + I K + + + + R I + Y I + + D ++Y
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 61 YRQVEL-RHRTDCSNIKSEGRMNVMRKLCDKSTFRSYL-------KLPNAADIFRPPPTL 112
+ + H NI+ RM + R + +L K+ + + + ++
Sbjct: 476 H----IGHH---LKNIEHPERMTLFRMV--------FLDFRFLEQKIRHDSTAWNASGSI 520
Query: 113 LGMALDDAAVEKQIERMVAFIQTEADEKLDDIR---RKIEED-YQIERERVTRDGKASVD 168
L + I + + ++ I KIEE+ + + R + D
Sbjct: 521 LNTLQQLKFYKPYICD----NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 169 EE-YAKKYRQVE 179
E + + ++QV+
Sbjct: 577 EAIFEEAHKQVQ 588
Score = 39.5 bits (91), Expect = 8e-04
Identities = 39/255 (15%), Positives = 79/255 (30%), Gaps = 85/255 (33%)
Query: 25 EKLDDIRRKIEEDYQIERERVTRDGKASVD----EEYAKKYRQ-------VELRHRTDC- 72
E + D + + +++T ++S++ EY K + + +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 73 --SNIKSEGRMNVMRKLCDKSTFRSYLKLPNAADIFRPPPTLLGMALDDAAVEKQIERMV 130
++ M V+ KL S VEKQ +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYS-----------------------------LVEKQPKEST 425
Query: 131 AFI---QTEADEKLDD---IRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVEL-RHR 183
I E KL++ + R I + Y I + + D ++Y + + H
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH----IGHH- 480
Query: 184 TDCSNIKSEGRMNVMR--------VKEDSVGKIIEE-----AKGRLSD-----------I 219
NI+ RM + R ++ KI + A G + + I
Sbjct: 481 --LKNIEHPERMTLFRMVFLDFRFLE----QKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 220 TEDRTKYTEILEKLI 234
++ KY ++ ++
Sbjct: 535 CDNDPKYERLVNAIL 549
>3i1k_A Hemagglutinin-esterase protein; SGNH-hydrolase fold, swiss roll,
envelope protein, glycoprot hemagglutinin, membrane,
transmembrane, virion; HET: NAG; 2.10A {Porcine
torovirus} PDB: 3i1l_A*
Length = 377
Score = 32.1 bits (72), Expect = 0.15
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 69 RTDCSNIKSEGRMNVMRKLCDKSTFRS 95
R+DC N + +++ ++LC K + R+
Sbjct: 24 RSDCGNKHTPKSLDIPQELCPKFSSRT 50
>3i26_A Hemagglutinin-esterase; SGNH-hydrolase fold, swiss roll, envelope
protein, glycoprot hemagglutinin, membrane,
transmembrane, virion; HET: NAG BMA MAN; 1.80A {Breda
virus serotype 1} PDB: 3i27_A*
Length = 384
Score = 32.1 bits (72), Expect = 0.16
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 69 RTDCSNIKSEGRMNVMRKLCDKSTFRS 95
R+DC+N +S +++ ++LC K + +S
Sbjct: 24 RSDCTNPQSPMSLDIPQQLCPKFSSKS 50
>1flc_A Haemagglutinin-esterase-fusion glycoprotein; receptor binding,
membrane fusion, influenz hydrolase; HET: NDG NAG BMA
MAN; 3.20A {Influenza c virus} SCOP: b.19.1.3 c.23.10.2
Length = 432
Score = 30.6 bits (68), Expect = 0.47
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 69 RTDCSNIKSEGRMNVMRKLCDKSTFRS 95
RTD SN +V K DK F S
Sbjct: 58 RTDKSNSAFPRSADVSAKTADKFRFLS 84
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.3
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 9 EKQ-IERMVAFIKTEADEK---LDDIRRKIE 35
EKQ ++++ A +K AD+ L I+ +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL-AIKATME 47
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis;
HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB:
2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 26.7 bits (59), Expect = 6.0
Identities = 10/104 (9%), Positives = 26/104 (25%), Gaps = 4/104 (3%)
Query: 28 DDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRKL 87
+ ++ + + K V E +A + + L + L
Sbjct: 114 SGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLLEEL----AELWNYPAARPIL 169
Query: 88 CDKSTFRSYLKLPNAADIFRPPPTLLGMALDDAAVEKQIERMVA 131
D +R ++ D+ + +E +
Sbjct: 170 EDIDGYRCAIRFARKHDLAISQLPNIDAGRHVELIEAIANEYLE 213
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain,
receptor, PAS domain, chromophore, sensory transduction;
HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Length = 520
Score = 27.0 bits (59), Expect = 7.1
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 88 CDKSTFRSYLKLPNAADIF-RPPPTLLGMALDDAAVEKQIERMVAFIQTEADEKLDDIR 145
+ N I R P LLG L + QI+ + + + L+ +
Sbjct: 35 LQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDPIQSRLTAGQISSLNPSK 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.356
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,752,774
Number of extensions: 237395
Number of successful extensions: 766
Number of sequences better than 10.0: 1
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 66
Length of query: 236
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 145
Effective length of database: 4,160,982
Effective search space: 603342390
Effective search space used: 603342390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)