RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12510
         (236 letters)



>d1enwa_ a.5.4.1 (A:) Elongation factor TFIIS domain 2 {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 114

 Score = 30.2 bits (68), Expect = 0.079
 Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 4  DDAAVEKQIERMVAFIKTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQ 63
               ++ ++ +   +  E++     I    +    IE E    +   + +  Y  +YR 
Sbjct: 19 HHKLRDQVLKALYDVLAKESEHPPQSILHTAK---AIESEMNKVNNCDTNEAAYKARYRI 75

Query: 64 VELRHRTDCSNIKSEGRMNVMRKLCDKS 91
          +        SN+ S+   ++  K+ +  
Sbjct: 76 I-------YSNVISKNNPDLKHKIANGD 96



 Score = 27.1 bits (60), Expect = 0.96
 Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 118 DDAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQ 177
                ++ ++ +   +  E++     I    +    IE E    +   + +  Y  +YR 
Sbjct: 19  HHKLRDQVLKALYDVLAKESEHPPQSILHTAK---AIESEMNKVNNCDTNEAAYKARYRI 75

Query: 178 VELRHRTDCSNIKSEGRMNVMR 199
           +        SN+ S+   ++  
Sbjct: 76  I-------YSNVISKNNPDLKH 90


>d1flca2 c.23.10.2 (A:1-150,A:307-427) Esterase domain of
          haemagglutinin-esterase-fusion glycoprotein HEF1
          {Influenza C virus [TaxId: 11552]}
          Length = 271

 Score = 31.1 bits (70), Expect = 0.091
 Identities = 11/27 (40%), Positives = 12/27 (44%)

Query: 69 RTDCSNIKSEGRMNVMRKLCDKSTFRS 95
          RTD SN       +V  K  DK  F S
Sbjct: 58 RTDKSNSAFPRSADVSAKTADKFRFLS 84


>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1
           {Synechocystis sp. pcc 6803 [TaxId: 1148]}
          Length = 127

 Score = 27.5 bits (61), Expect = 0.70
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 101 NAADIF-RPPPTLLGMALDDAAVEKQIERMVAFIQTEADEKLDDIR 145
           N   I  R P  LLG  L +     QI+ + + +       L+  +
Sbjct: 45  NCTGILGRSPEDLLGRTLGEVFDSFQIDPIQSRLTAGQISSLNPSK 90


>d2ov9a1 d.38.1.5 (A:7-209) Hypothetical protein RHA1_ro05818
           {Rhodococcus sp. RHA1 [TaxId: 101510]}
          Length = 203

 Score = 28.0 bits (62), Expect = 0.80
 Identities = 7/60 (11%), Positives = 21/60 (35%), Gaps = 8/60 (13%)

Query: 92  TFRSYLKLPNAADIFRPPPTLLGMALDDAAVEKQIERMVAFIQTEAD-EKLDDIRRKIEE 150
           TF +      +  +   PP    +     A  + ++ ++    T+     L+ +  ++  
Sbjct: 2   TFEN----SPSGTVLTSPPDGSAVDRATDAARRVVDALLR---TDRGNANLERVAEELNS 54


>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
           synthetase 1 {Bacillus brevis [TaxId: 1393]}
          Length = 514

 Score = 25.2 bits (54), Expect = 8.7
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 5/40 (12%)

Query: 2   ALDDAAV-----EKQIERMVAFIKTEADEKLDDIRRKIEE 36
            + + AV      ++   + A+  +E    L+ +R+   E
Sbjct: 438 YISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSE 477



 Score = 24.9 bits (53), Expect = 10.0
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 5/40 (12%)

Query: 116 ALDDAAV-----EKQIERMVAFIQTEADEKLDDIRRKIEE 150
            + + AV      ++   + A+  +E    L+ +R+   E
Sbjct: 438 YISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSE 477


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 894,455
Number of extensions: 44500
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 24
Length of query: 236
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 153
Effective length of database: 1,268,006
Effective search space: 194004918
Effective search space used: 194004918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)