Query psy12513
Match_columns 159
No_of_seqs 112 out of 164
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 21:14:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1664|consensus 100.0 1.4E-35 3.1E-40 246.8 11.9 90 49-138 1-90 (220)
2 COG1390 NtpE Archaeal/vacuolar 98.8 6.7E-08 1.4E-12 79.3 11.6 83 57-139 3-85 (194)
3 PF01991 vATP-synt_E: ATP synt 98.7 3.1E-07 6.7E-12 71.3 10.9 75 64-138 1-75 (198)
4 PRK03963 V-type ATP synthase s 97.5 0.0029 6.3E-08 50.2 11.6 81 58-138 4-84 (198)
5 PRK02292 V-type ATP synthase s 96.6 0.061 1.3E-06 42.6 11.6 77 58-138 3-83 (188)
6 PRK01194 V-type ATP synthase s 96.2 0.1 2.2E-06 42.2 11.2 78 59-138 4-83 (185)
7 PRK01558 V-type ATP synthase s 95.7 0.32 7E-06 39.6 11.8 83 51-137 2-84 (198)
8 PRK01005 V-type ATP synthase s 91.3 6.8 0.00015 32.7 12.1 84 51-138 7-90 (207)
9 PRK03963 V-type ATP synthase s 91.2 5.9 0.00013 31.4 11.3 59 57-115 14-72 (198)
10 PRK01194 V-type ATP synthase s 84.8 14 0.00031 29.9 9.8 63 54-116 10-72 (185)
11 TIGR02926 AhaH ATP synthase ar 77.2 23 0.0005 25.1 8.0 45 63-107 23-67 (85)
12 PRK08475 F0F1 ATP synthase sub 75.4 39 0.00084 26.8 10.4 59 61-119 78-136 (167)
13 COG2811 NtpF Archaeal/vacuolar 71.3 46 0.001 25.8 11.9 48 63-110 31-78 (108)
14 PRK15471 chain length determin 69.3 74 0.0016 28.2 10.4 84 41-125 131-215 (325)
15 PF01765 RRF: Ribosome recycli 68.5 57 0.0012 25.8 8.9 55 55-109 92-163 (165)
16 PRK06231 F0F1 ATP synthase sub 66.7 72 0.0016 26.3 10.5 64 62-125 105-168 (205)
17 PRK14473 F0F1 ATP synthase sub 66.1 60 0.0013 25.2 8.9 63 62-124 65-127 (164)
18 PRK02292 V-type ATP synthase s 65.9 64 0.0014 25.4 9.9 39 59-97 26-64 (188)
19 PRK13460 F0F1 ATP synthase sub 65.8 64 0.0014 25.4 8.9 59 63-121 74-132 (173)
20 PRK14471 F0F1 ATP synthase sub 64.2 60 0.0013 25.2 8.0 57 63-119 66-122 (164)
21 PRK07353 F0F1 ATP synthase sub 63.6 60 0.0013 24.3 8.9 59 62-120 62-120 (140)
22 PRK14472 F0F1 ATP synthase sub 62.0 76 0.0017 25.0 8.6 58 64-121 77-134 (175)
23 PRK07352 F0F1 ATP synthase sub 61.7 68 0.0015 25.2 8.0 69 63-131 77-145 (174)
24 PRK13460 F0F1 ATP synthase sub 61.5 69 0.0015 25.2 8.0 35 60-94 97-131 (173)
25 CHL00118 atpG ATP synthase CF0 61.2 76 0.0016 24.6 8.9 60 62-121 79-138 (156)
26 PRK14474 F0F1 ATP synthase sub 58.9 1.1E+02 0.0024 25.9 10.1 67 66-132 66-132 (250)
27 PRK08475 F0F1 ATP synthase sub 58.3 90 0.0019 24.7 8.2 30 65-94 108-137 (167)
28 PRK10381 LPS O-antigen length 57.7 1.5E+02 0.0032 26.8 10.4 82 42-124 172-254 (377)
29 TIGR03321 alt_F1F0_F0_B altern 57.6 1.1E+02 0.0024 25.5 10.5 62 64-125 64-125 (246)
30 PRK09174 F0F1 ATP synthase sub 57.4 1.1E+02 0.0024 25.3 8.9 58 63-120 111-168 (204)
31 TIGR02926 AhaH ATP synthase ar 57.1 66 0.0014 22.7 7.6 46 55-100 30-75 (85)
32 PRK13461 F0F1 ATP synthase sub 56.0 92 0.002 24.0 8.0 62 63-124 63-124 (159)
33 CHL00019 atpF ATP synthase CF0 55.3 99 0.0021 24.6 8.0 64 63-126 82-145 (184)
34 PRK13453 F0F1 ATP synthase sub 54.1 1.1E+02 0.0023 24.2 8.8 59 64-122 77-135 (173)
35 TIGR02499 HrpE_YscL_not type I 52.4 1E+02 0.0022 23.3 10.5 47 62-108 15-61 (166)
36 PRK01005 V-type ATP synthase s 52.2 1.4E+02 0.003 25.0 9.4 29 65-93 43-71 (207)
37 PRK06231 F0F1 ATP synthase sub 52.0 1.1E+02 0.0024 25.2 8.0 44 62-105 116-159 (205)
38 PRK08404 V-type ATP synthase s 50.8 1E+02 0.0022 22.9 10.3 52 67-118 20-71 (103)
39 PRK08404 V-type ATP synthase s 50.4 1E+02 0.0022 22.9 8.0 41 59-99 38-78 (103)
40 PRK13461 F0F1 ATP synthase sub 49.6 1.2E+02 0.0026 23.4 8.9 27 65-91 91-117 (159)
41 PRK13453 F0F1 ATP synthase sub 49.3 1.3E+02 0.0028 23.8 8.0 12 90-101 114-125 (173)
42 KOG2880|consensus 48.2 1.1E+02 0.0024 28.8 8.0 55 59-113 83-137 (424)
43 PRK13455 F0F1 ATP synthase sub 48.1 1.4E+02 0.003 23.7 8.8 54 66-119 88-141 (184)
44 CHL00019 atpF ATP synthase CF0 48.0 1.4E+02 0.003 23.7 12.5 13 122-134 122-134 (184)
45 PF01991 vATP-synt_E: ATP synt 47.9 1.3E+02 0.0028 23.2 11.2 48 65-112 13-60 (198)
46 TIGR01144 ATP_synt_b ATP synth 47.1 1.2E+02 0.0026 22.8 8.0 63 62-124 52-114 (147)
47 PRK07352 F0F1 ATP synthase sub 46.5 1.4E+02 0.0031 23.4 10.5 19 66-84 106-124 (174)
48 PF00430 ATP-synt_B: ATP synth 45.4 1.2E+02 0.0025 22.0 8.8 58 63-120 57-114 (132)
49 PRK14473 F0F1 ATP synthase sub 45.0 1.4E+02 0.0031 23.0 8.0 14 89-102 103-116 (164)
50 PF04997 RNA_pol_Rpb1_1: RNA p 44.5 5.5 0.00012 32.1 -0.7 35 30-64 235-269 (337)
51 PF06188 HrpE: HrpE/YscL/FliH 43.7 1.8E+02 0.0039 23.7 10.7 28 62-89 32-59 (191)
52 PRK05759 F0F1 ATP synthase sub 42.1 1.5E+02 0.0033 22.4 8.9 60 62-121 61-120 (156)
53 PRK13428 F0F1 ATP synthase sub 42.1 1.5E+02 0.0033 27.2 8.0 60 62-121 58-117 (445)
54 TIGR03321 alt_F1F0_F0_B altern 40.4 2.1E+02 0.0045 23.9 8.0 38 59-96 85-122 (246)
55 PF00430 ATP-synt_B: ATP synth 40.2 1.3E+02 0.0028 21.7 6.1 39 65-103 70-108 (132)
56 PRK14472 F0F1 ATP synthase sub 38.0 2E+02 0.0043 22.6 8.0 47 62-108 86-132 (175)
57 KOG1029|consensus 36.5 1.8E+02 0.0039 30.3 8.0 58 52-109 541-615 (1118)
58 PF10504 DUF2452: Protein of u 35.9 2.2E+02 0.0047 23.6 7.2 51 47-106 28-78 (159)
59 CHL00118 atpG ATP synthase CF0 35.5 2.1E+02 0.0045 22.2 8.0 40 68-107 96-135 (156)
60 PRK07353 F0F1 ATP synthase sub 34.6 1.9E+02 0.0042 21.5 8.0 15 88-102 99-113 (140)
61 PRK14474 F0F1 ATP synthase sub 34.1 2.9E+02 0.0062 23.4 8.0 41 59-99 85-125 (250)
62 PRK08476 F0F1 ATP synthase sub 33.7 2.2E+02 0.0048 21.9 9.4 53 62-114 64-116 (141)
63 COG0711 AtpF F0F1-type ATP syn 32.9 2.5E+02 0.0053 22.2 8.7 62 66-131 67-128 (161)
64 cd07682 F-BAR_srGAP2 The F-BAR 32.4 3.6E+02 0.0079 24.0 8.5 38 71-113 115-162 (263)
65 PRK00106 hypothetical protein; 29.5 5.2E+02 0.011 24.9 12.2 19 68-86 65-83 (535)
66 PRK00106 hypothetical protein; 28.8 4.8E+02 0.01 25.1 9.3 11 67-77 49-59 (535)
67 PRK13454 F0F1 ATP synthase sub 28.7 3.1E+02 0.0067 22.0 10.4 54 62-115 88-141 (181)
68 TIGR01144 ATP_synt_b ATP synth 27.5 2.7E+02 0.0058 20.9 10.5 17 67-83 83-99 (147)
69 PRK11638 lipopolysaccharide bi 26.6 4.7E+02 0.01 23.4 10.6 81 43-124 154-235 (342)
70 PF10118 Metal_hydrol: Predict 25.4 69 0.0015 27.2 2.8 22 48-72 53-74 (253)
71 PF15458 NTR2: Nineteen comple 25.3 4.3E+02 0.0093 22.5 7.7 55 32-96 192-246 (254)
72 KOG3990|consensus 25.0 3E+02 0.0066 24.9 6.8 29 57-85 236-265 (305)
73 PF09731 Mitofilin: Mitochondr 24.8 5.6E+02 0.012 23.7 11.8 26 75-100 307-332 (582)
74 PRK09173 F0F1 ATP synthase sub 24.5 3.3E+02 0.0071 20.9 7.6 16 68-83 65-80 (159)
75 PRK06937 type III secretion sy 23.6 4E+02 0.0086 21.5 7.6 33 65-97 35-67 (204)
76 KOG1854|consensus 22.3 8.1E+02 0.018 24.6 11.2 67 57-123 367-444 (657)
77 PF15155 MRFAP1: MORF4 family- 22.2 1.5E+02 0.0033 23.6 4.0 18 65-82 96-113 (127)
78 PRK15365 type III secretion sy 21.8 4E+02 0.0086 20.9 7.1 59 56-115 29-90 (107)
79 PF10669 Phage_Gp23: Protein g 21.5 3.2E+02 0.007 21.5 5.6 40 95-136 51-90 (121)
80 COG5259 RSC8 RSC chromatin rem 21.4 7.7E+02 0.017 24.1 11.4 97 48-144 383-491 (531)
81 PRK13455 F0F1 ATP synthase sub 21.1 4.2E+02 0.0091 20.9 8.0 9 91-99 124-132 (184)
82 cd03527 RuBisCO_small Ribulose 20.9 91 0.002 23.6 2.4 17 47-63 10-26 (99)
No 1
>KOG1664|consensus
Probab=100.00 E-value=1.4e-35 Score=246.82 Aligned_cols=90 Identities=39% Similarity=0.595 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHHHHH
Q psy12513 49 LDDAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMN 128 (159)
Q Consensus 49 lsD~eVqkQIkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqaRLk 128 (159)
|||+||++||+||++||+|||+|||+||+++|+|||||||++||++|+.+|+++|++|+||++++++|+.||++|++||+
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhh
Q psy12513 129 VMRLNAARWS 138 (159)
Q Consensus 129 vL~aRd~~~~ 138 (159)
+|++|+++++
T Consensus 81 vL~ar~d~i~ 90 (220)
T KOG1664|consen 81 VLRARDDIID 90 (220)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 2
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=98.82 E-value=6.7e-08 Score=79.29 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q psy12513 57 QIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRLNAAR 136 (159)
Q Consensus 57 QIkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqaRLkvL~aRd~~ 136 (159)
.+..|++||.++|.+||++|...|.++++.++...++.....++..+.+.+++++..++...|+..+++|..+|.++.++
T Consensus 3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~ 82 (194)
T COG1390 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI 82 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy12513 137 WSY 139 (159)
Q Consensus 137 ~~~ 139 (159)
++-
T Consensus 83 l~~ 85 (194)
T COG1390 83 LES 85 (194)
T ss_pred HHH
Confidence 874
No 3
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=98.68 E-value=3.1e-07 Score=71.28 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHHHHHHHHHhhhhhh
Q psy12513 64 FIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRLNAARWS 138 (159)
Q Consensus 64 FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqaRLkvL~aRd~~~~ 138 (159)
||.+||++||++|...|+++++-.+....++....+...+++..++++..+..+.|...+++|..+|.+|.+++.
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~ 75 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIID 75 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=97.47 E-value=0.0029 Score=50.23 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHHHHHHHHHhhhhh
Q psy12513 58 IERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRLNAARW 137 (159)
Q Consensus 58 IkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqaRLkvL~aRd~~~ 137 (159)
+..+++=|..+|+.++++|-..|.++-+-.+....++-.......-++-..+++..++...|+.-++.|.++|.+|++++
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~ 83 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELI 83 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888888888888888888766666666555555555556666678888889999999999999999999876
Q ss_pred h
Q psy12513 138 S 138 (159)
Q Consensus 138 ~ 138 (159)
+
T Consensus 84 ~ 84 (198)
T PRK03963 84 S 84 (198)
T ss_pred H
Confidence 5
No 5
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=96.57 E-value=0.061 Score=42.59 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHH---HHHHHHHH-hHhHHHHHHhhhhhhhhHHHHHHHHHh
Q psy12513 58 IERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKAS---VDEEYAKK-YRQVELRHRTDCSNIKSEGRMNVMRLN 133 (159)
Q Consensus 58 IkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~k---I~~eYeKK-eKqve~qKkI~~Sn~iNqaRLkvL~aR 133 (159)
+...+.=|.++|+..+++|...|+.+- ..++.+-+.+ |..++.++ .++...-.+.+.|...|.+|..+|.+|
T Consensus 3 l~~i~~~I~~~a~~e~~~I~~ea~~~~----~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r 78 (188)
T PRK02292 3 LETVVEDIRDEARARASEIRAEADEEA----EEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788889999998888888764 3333333333 43333333 344455556778999999999999999
Q ss_pred hhhhh
Q psy12513 134 AARWS 138 (159)
Q Consensus 134 d~~~~ 138 (159)
..++.
T Consensus 79 ~~~l~ 83 (188)
T PRK02292 79 KEVLE 83 (188)
T ss_pred HHHHH
Confidence 98875
No 6
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=96.22 E-value=0.1 Score=42.20 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhH-hHH-HHHHhhhhhhhhHHHHHHHHHhhhh
Q psy12513 59 ERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYR-QVE-LRHRTDCSNIKSEGRMNVMRLNAAR 136 (159)
Q Consensus 59 kqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeK-qve-~qKkI~~Sn~iNqaRLkvL~aRd~~ 136 (159)
..++.=|.+||+.+|++|...|+.+-+ |=..--+.+-.++.+.|.+|.+ +++ ..++|. |+.-=.+|+++|.+|+++
T Consensus 4 e~i~~~I~~ea~~~a~~I~~eA~~~ae-ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~rii-s~A~Le~R~~~L~aree~ 81 (185)
T PRK01194 4 EDVIKDIEKSREEKKKEINDEYSKRIE-KLEKECDSKIQSIKEYYEKKMRAEISRLKKSII-DKANIEARSIKREKRREI 81 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHH
Confidence 344555566666666666665555432 1122222333344444444433 222 223333 333337888999999988
Q ss_pred hh
Q psy12513 137 WS 138 (159)
Q Consensus 137 ~~ 138 (159)
+.
T Consensus 82 I~ 83 (185)
T PRK01194 82 LK 83 (185)
T ss_pred HH
Confidence 75
No 7
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=95.66 E-value=0.32 Score=39.59 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHHHHHHH
Q psy12513 51 DAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVM 130 (159)
Q Consensus 51 D~eVqkQIkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqaRLkvL 130 (159)
+.++|.=+.++..=|..+|+.+|.+|-..|+++ -..|+.+-+.....-.++=+++++.-+++..|......|-.+|
T Consensus 2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~e----Ae~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll 77 (198)
T PRK01558 2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEE----AEEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI 77 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888899999999999888875 5678887777777777888888888888888888899999999
Q ss_pred HHhhhhh
Q psy12513 131 RLNAARW 137 (159)
Q Consensus 131 ~aRd~~~ 137 (159)
.++..++
T Consensus 78 ~~k~~i~ 84 (198)
T PRK01558 78 SFEKSIK 84 (198)
T ss_pred HHHHHHH
Confidence 9998887
No 8
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=91.26 E-value=6.8 Score=32.70 Aligned_cols=84 Identities=11% Similarity=0.151 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHHHHHHH
Q psy12513 51 DAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVM 130 (159)
Q Consensus 51 D~eVqkQIkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqaRLkvL 130 (159)
++.+|.=+.++..=|..+|+++|.+|-..|.++= ..++.+-+......-++=.++++..++-..|+.-=..|-.+|
T Consensus 7 ~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~A----e~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l 82 (207)
T PRK01005 7 QDKLKQICDALREETLKPAEEEAGAIVHNAKEQA----KRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLE 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666778888888899999999998888764 247777666666666666666777777777777667777777
Q ss_pred HHhhhhhh
Q psy12513 131 RLNAARWS 138 (159)
Q Consensus 131 ~aRd~~~~ 138 (159)
.++..++.
T Consensus 83 ~aKqevi~ 90 (207)
T PRK01005 83 SLKQAVEN 90 (207)
T ss_pred HHHHHHHH
Confidence 77776554
No 9
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=91.24 E-value=5.9 Score=31.41 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy12513 57 QIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHR 115 (159)
Q Consensus 57 QIkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKk 115 (159)
+-++=.+=|..+|+.+|++|...|.++.+.|...+++..+..+..+-.+-...+..+.+
T Consensus 14 ~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r 72 (198)
T PRK03963 14 EAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVR 72 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566677777777777777777777777777776666666555554444444444
No 10
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=84.78 E-value=14 Score=29.86 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHh
Q psy12513 54 VEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRT 116 (159)
Q Consensus 54 VqkQIkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI 116 (159)
..++-++=..-|..||+.+|++|...|+++-+-.+..+.+.-...+...+++-.-.+.++.|-
T Consensus 10 I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~ 72 (185)
T PRK01194 10 IEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARS 72 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344555667889999999999999999999999999999998888888888888777776654
No 11
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=77.21 E-value=23 Score=25.07 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy12513 63 AFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKY 107 (159)
Q Consensus 63 ~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKe 107 (159)
.-|..+|...|+.+...+.++=..|..+++.+-+..|..+..+=.
T Consensus 23 ~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~ 67 (85)
T TIGR02926 23 KQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIR 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555444433
No 12
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=75.43 E-value=39 Score=26.80 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhh
Q psy12513 61 MVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCS 119 (159)
Q Consensus 61 Mv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~S 119 (159)
=..-+..+|+.+|.+|-..|.++-+.++..++.+-+......-++-...++..++-..+
T Consensus 78 e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~ 136 (167)
T PRK08475 78 DALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMER 136 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999998888888888777777777655543
No 13
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=71.33 E-value=46 Score=25.84 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhH
Q psy12513 63 AFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQV 110 (159)
Q Consensus 63 ~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqv 110 (159)
.=|..+|.++|++|-.+|+.+-.-++..+++..+..+..+=++=..+.
T Consensus 31 ~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~a 78 (108)
T COG2811 31 EQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEA 78 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456779999999999999999988888888877776665554444333
No 14
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=69.28 E-value=74 Score=28.24 Aligned_cols=84 Identities=8% Similarity=0.169 Sum_probs=62.6
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhh
Q psy12513 41 PPTLLGMALDDAAVEKQIERMVAFIQTEADEKL-DDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCS 119 (159)
Q Consensus 41 ~~~m~~~alsD~eVqkQIkqMv~FI~QEA~EKA-~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~S 119 (159)
+..++..+-|..+.++-+++-++|+.+.+..-. .+|...-+.--+..+.++ ..+.......|+.+..+++-.-+|+.+
T Consensus 131 ~~~lsf~a~ta~~A~~lL~~YI~fv~~~v~~~l~~~i~~~i~~~~~~l~~~~-~~~~~~ak~~~~~~I~rL~~AL~IA~a 209 (325)
T PRK15471 131 PLSVSYVGQTAEGAQKKLAQYIQQVDDQVAKELEKDLKDNIALRTKTLQDSL-ETQEVVAQEQKDLRIKQIQEALQYANQ 209 (325)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999988776543 355555544444444443 555667888999999999999999888
Q ss_pred hhhhHH
Q psy12513 120 NIKSEG 125 (159)
Q Consensus 120 n~iNqa 125 (159)
.-+++-
T Consensus 210 agI~kP 215 (325)
T PRK15471 210 ANITKP 215 (325)
T ss_pred cCCCCC
Confidence 777643
No 15
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=68.51 E-value=57 Score=25.76 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH---------------HHHHHH--hHHHHHHHHHHHHHHHHhHh
Q psy12513 55 EKQIERMVAFIQTEADEKLDDIRRKIEED---------------YQIERE--RVTRDGKASVDEEYAKKYRQ 109 (159)
Q Consensus 55 qkQIkqMv~FI~QEA~EKA~EI~~KAeEE---------------FnIEK~--kLV~~EK~kI~~eYeKKeKq 109 (159)
-+++-+.+.-+-.+|....+.|+..+... +..|+. .+......+|++.|+.|+|+
T Consensus 92 R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~keke 163 (165)
T PF01765_consen 92 RKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKKKEKE 163 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444445555555554444444 444443 55566666666666666654
No 16
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=66.69 E-value=72 Score=26.27 Aligned_cols=64 Identities=8% Similarity=0.072 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHH
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEG 125 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqa 125 (159)
..-..++|+.+|.+|...|.++-+.++..++.+-+..+...-+.-..+++.+++-....+-.+.
T Consensus 105 ~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei 168 (205)
T PRK06231 105 AKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKES 168 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888899999999999988888888888888888877777777777776655544443
No 17
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=66.10 E-value=60 Score=25.16 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhH
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSE 124 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNq 124 (159)
..-...+|..+|.+|-..|..+-.-++..++.+-+..+....+.-..+++.++.-....+-++
T Consensus 65 ~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~ 127 (164)
T PRK14473 65 YEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQ 127 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888889988988888888888888888888888888888877776666555443
No 18
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=65.90 E-value=64 Score=25.42 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Q psy12513 59 ERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKA 97 (159)
Q Consensus 59 kqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~ 97 (159)
++-+.=|..||+++|++|...+.++..-|...+.+....
T Consensus 26 ~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s 64 (188)
T PRK02292 26 DEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELS 64 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555554444333
No 19
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=65.81 E-value=64 Score=25.40 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhh
Q psy12513 63 AFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNI 121 (159)
Q Consensus 63 ~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~ 121 (159)
.-..++|+.+|.+|-..|.++-.-++..++.+-+..+...-+....+++.++.-....+
T Consensus 74 e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el 132 (173)
T PRK13460 74 EARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQL 132 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888888888888888888777777777777777766665554444
No 20
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=64.19 E-value=60 Score=25.17 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhh
Q psy12513 63 AFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCS 119 (159)
Q Consensus 63 ~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~S 119 (159)
.-...+|+.++.+|-..|.++-+-++..++.+-+......-++-..+++.++.-...
T Consensus 66 e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~ 122 (164)
T PRK14471 66 ERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMA 122 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335557777777777777777666666666655555555555555555555444433
No 21
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=63.58 E-value=60 Score=24.25 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhh
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSN 120 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn 120 (159)
..-...+|+..|.+|...|.++-+-++..++.+-+..+...-+.-..+++.++.-....
T Consensus 62 ~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~ 120 (140)
T PRK07353 62 YEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQ 120 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888888888888888888888888777777777777766555443
No 22
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=62.04 E-value=76 Score=24.96 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhh
Q psy12513 64 FIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNI 121 (159)
Q Consensus 64 FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~ 121 (159)
-...+|+..|.+|-..|.++-+-++..++.+-+..+...-+....+++.++.-....+
T Consensus 77 ~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l 134 (175)
T PRK14472 77 ELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVL 134 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888887788887777777777777666666666665554443
No 23
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=61.74 E-value=68 Score=25.23 Aligned_cols=69 Identities=7% Similarity=0.095 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHHHHHHHH
Q psy12513 63 AFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMR 131 (159)
Q Consensus 63 ~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqaRLkvL~ 131 (159)
.-..++|+.+|.+|-..|.++-+.++..++.+-+..+....++-...++.+++-....+-.+.--..+.
T Consensus 77 ~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~ 145 (174)
T PRK07352 77 QQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIA 145 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678889999999999999999999999999988888888888888888877776665554444333
No 24
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=61.53 E-value=69 Score=25.25 Aligned_cols=35 Identities=3% Similarity=0.220 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q psy12513 60 RMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRD 94 (159)
Q Consensus 60 qMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~ 94 (159)
++..-|..+|++.++.+...|..+...|+.+..++
T Consensus 97 ~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~e 131 (173)
T PRK13460 97 KLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQ 131 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 25
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=61.25 E-value=76 Score=24.65 Aligned_cols=60 Identities=8% Similarity=0.051 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhh
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNI 121 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~ 121 (159)
..-..++|+..|.+|-..|.++=+-++..++.+-+.......+.-..+++.++.-....+
T Consensus 79 ~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l 138 (156)
T CHL00118 79 YEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSL 138 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888888888888888877777777777777766554443
No 26
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=58.91 E-value=1.1e+02 Score=25.89 Aligned_cols=67 Identities=9% Similarity=0.182 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHHHHHHHHH
Q psy12513 66 QTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRL 132 (159)
Q Consensus 66 ~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqaRLkvL~a 132 (159)
.++|+.++.+|-..|.++=+-++..++.+-+..+...-++....++.++.-....+-++..--.+..
T Consensus 66 l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~ 132 (250)
T PRK14474 66 QQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKI 132 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477888888888888888888999999988888888888888888887777666655544443333
No 27
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=58.27 E-value=90 Score=24.74 Aligned_cols=30 Identities=17% Similarity=0.479 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q psy12513 65 IQTEADEKLDDIRRKIEEDYQIERERVTRD 94 (159)
Q Consensus 65 I~QEA~EKA~EI~~KAeEEFnIEK~kLV~~ 94 (159)
|..+|++.++.+..+|.++=+.|+.+.+.+
T Consensus 108 ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~e 137 (167)
T PRK08475 108 IEKQTKDDIENLIKSFEELMEFEVRKMERE 137 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 28
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=57.73 E-value=1.5e+02 Score=26.80 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=58.2
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhh
Q psy12513 42 PTLLGMALDDAAVEKQIERMVAFIQTEADEK-LDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSN 120 (159)
Q Consensus 42 ~~m~~~alsD~eVqkQIkqMv~FI~QEA~EK-A~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn 120 (159)
.++|..+-+..+.++-+++.++|+.+-+..- -++|...-+..-+..+.++ +.+.......++.+...++-.-+|+.+.
T Consensus 172 ~~Ls~~a~t~~~A~~lL~~YI~fv~~~~~~~l~~~i~~~~~~k~~~~~~~~-~~~~~~ak~~~~~~i~rl~~AL~IA~aa 250 (377)
T PRK10381 172 WTLSFTAPTSEEAQDVLSGYINYISTIVVKEVLENIRNKLEIKTQFEKEKL-AMDRIKLKNQLDANIQRLNYSLSIANAA 250 (377)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3677889999999999999999998766543 3466554444444443333 4455667778888888888888888776
Q ss_pred hhhH
Q psy12513 121 IKSE 124 (159)
Q Consensus 121 ~iNq 124 (159)
-+++
T Consensus 251 gI~k 254 (377)
T PRK10381 251 GIKK 254 (377)
T ss_pred CCCC
Confidence 6653
No 29
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=57.57 E-value=1.1e+02 Score=25.46 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHH
Q psy12513 64 FIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEG 125 (159)
Q Consensus 64 FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqa 125 (159)
-...+|+..+.+|-..|..+-.-++..++.+-+..+....++....++.++.-....+-++.
T Consensus 64 ~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei 125 (246)
T TIGR03321 64 EKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRT 125 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888889999888888888888888888777766665554433
No 30
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=57.37 E-value=1.1e+02 Score=25.32 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhh
Q psy12513 63 AFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSN 120 (159)
Q Consensus 63 ~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn 120 (159)
.-...+|+.+|.+|-..|.++-+-++..++.+-...+....+.=+++++..+.-..+.
T Consensus 111 e~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~e 168 (204)
T PRK09174 111 EQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMAD 168 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777776666555555555555554444444444444444444433
No 31
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=57.11 E-value=66 Score=22.69 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Q psy12513 55 EKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVD 100 (159)
Q Consensus 55 qkQIkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~ 100 (159)
..+-.++..=+..+|...+..|-.+|.++.+.|+.+.+.+-+..|-
T Consensus 30 ~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~k~ev~ 75 (85)
T TIGR02926 30 REEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIE 75 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666777777777777777777766666666665543
No 32
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=55.96 E-value=92 Score=23.99 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhH
Q psy12513 63 AFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSE 124 (159)
Q Consensus 63 ~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNq 124 (159)
.-...+|..+|.+|-..|..+-+-++..++.+-+..+....+.-..+++..+.-..+.+-.+
T Consensus 63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~e 124 (159)
T PRK13461 63 ERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQ 124 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888888888888888777777777777666555554333
No 33
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=55.28 E-value=99 Score=24.59 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHHH
Q psy12513 63 AFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGR 126 (159)
Q Consensus 63 ~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqaR 126 (159)
.-+..+|+..|.+|-..|..+-+-++..++.+-+..+....+.-..+++.++.-....+-++.-
T Consensus 82 e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~ 145 (184)
T CHL00019 82 RARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVF 145 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477889999999999999999999999999999888888888888887777766666554443
No 34
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=54.12 E-value=1.1e+02 Score=24.24 Aligned_cols=59 Identities=8% Similarity=0.177 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhh
Q psy12513 64 FIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIK 122 (159)
Q Consensus 64 FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~i 122 (159)
-...+|+..|.+|-..|.++-+-++..++.+-+.......+.-..+++.++.-....+-
T Consensus 77 ~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~ 135 (173)
T PRK13453 77 QKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADIN 135 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777787778877777778888777777777777666666666665555443
No 35
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=52.39 E-value=1e+02 Score=23.31 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYR 108 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeK 108 (159)
-.=|..+|+.+|+.|-..|+++++-.+..-.++....-..+.....-
T Consensus 15 A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~ 61 (166)
T TIGR02499 15 AQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLA 61 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577899999999999999999888877777666555555544443
No 36
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=52.18 E-value=1.4e+02 Score=24.95 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHH
Q psy12513 65 IQTEADEKLDDIRRKIEEDYQIERERVTR 93 (159)
Q Consensus 65 I~QEA~EKA~EI~~KAeEEFnIEK~kLV~ 93 (159)
|..+|+..|+.|...|.++.+.|+.+..-
T Consensus 43 Ii~eA~~EAe~ii~~A~~eae~ek~r~~s 71 (207)
T PRK01005 43 IIAEAQEEAEKIIRSAEETADQKLKQGES 71 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777666655443
No 37
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=52.02 E-value=1.1e+02 Score=25.18 Aligned_cols=44 Identities=9% Similarity=0.183 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAK 105 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeK 105 (159)
.+-|..+|.+.|+.+...+.++-+.|-.+++++-+..|..+-++
T Consensus 116 A~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~ 159 (205)
T PRK06231 116 AKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRE 159 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555544444444444455555555555555544433
No 38
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=50.81 E-value=1e+02 Score=22.94 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhh
Q psy12513 67 TEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDC 118 (159)
Q Consensus 67 QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~ 118 (159)
++|+.++.+|-..|..+=.-++..++.+-+.....--++=.+.++..+.-..
T Consensus 20 ~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~ 71 (103)
T PRK08404 20 EKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKIL 71 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433333334444333333
No 39
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=50.44 E-value=1e+02 Score=22.91 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q psy12513 59 ERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASV 99 (159)
Q Consensus 59 kqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI 99 (159)
.+...=|..+|.+.|..|..+|..+=+.||.+.+..-+..|
T Consensus 38 ~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~ei 78 (103)
T PRK08404 38 KKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEI 78 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555444444
No 40
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=49.65 E-value=1.2e+02 Score=23.38 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhH
Q psy12513 65 IQTEADEKLDDIRRKIEEDYQIERERV 91 (159)
Q Consensus 65 I~QEA~EKA~EI~~KAeEEFnIEK~kL 91 (159)
|..+|++.++.|...|.++...||.+.
T Consensus 91 i~~~A~~ea~~~~~~a~~~i~~e~~~a 117 (159)
T PRK13461 91 IVKEAHEEADLIIERAKLEAQREKEKA 117 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433333333
No 41
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=49.33 E-value=1.3e+02 Score=23.77 Aligned_cols=12 Identities=0% Similarity=0.257 Sum_probs=4.6
Q ss_pred hHHHHHHHHHHH
Q psy12513 90 RVTRDGKASVDE 101 (159)
Q Consensus 90 kLV~~EK~kI~~ 101 (159)
+++++-+..|..
T Consensus 114 ~~~~~A~~~I~~ 125 (173)
T PRK13453 114 GMIETAQSEINS 125 (173)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 42
>KOG2880|consensus
Probab=48.20 E-value=1.1e+02 Score=28.83 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHH
Q psy12513 59 ERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELR 113 (159)
Q Consensus 59 kqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~q 113 (159)
+-...=++-||.++++|+..+--+.||.|++.+-+..+....+-+.+-+.+-+..
T Consensus 83 ~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K~k~~~E~~k~le~~~~~E 137 (424)
T KOG2880|consen 83 EDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSKKKNLAERFKKLEVQREEE 137 (424)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHhhcchhhH
Confidence 3334445589999999999999999999999998887666555444444443333
No 43
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=48.07 E-value=1.4e+02 Score=23.70 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhh
Q psy12513 66 QTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCS 119 (159)
Q Consensus 66 ~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~S 119 (159)
.++|+.++.+|-..|.++=+-++..+..+-...+....++-.++++.++.-...
T Consensus 88 L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~ 141 (184)
T PRK13455 88 QREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVK 141 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666655555555555555555555555555444443333
No 44
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=47.99 E-value=1.4e+02 Score=23.73 Aligned_cols=13 Identities=0% Similarity=-0.176 Sum_probs=5.0
Q ss_pred hhHHHHHHHHHhh
Q psy12513 122 KSEGRMNVMRLNA 134 (159)
Q Consensus 122 iNqaRLkvL~aRd 134 (159)
++++|-.+-..+.
T Consensus 122 ~~~a~~~ie~Ek~ 134 (184)
T CHL00019 122 ENYKNETIRFEQQ 134 (184)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 45
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=47.93 E-value=1.3e+02 Score=23.22 Aligned_cols=48 Identities=25% Similarity=0.381 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHH
Q psy12513 65 IQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVEL 112 (159)
Q Consensus 65 I~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~ 112 (159)
|..||++.++.|...|.++-.-+....++.....+.....+....+.+
T Consensus 13 I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 60 (198)
T PF01991_consen 13 IIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAEL 60 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444444444444444444444333333
No 46
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=47.07 E-value=1.2e+02 Score=22.77 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhH
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSE 124 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNq 124 (159)
..-..++|+..|.+|-..|..+-+-++..++.+-+..+....+.-...++..+.-..+.+-.+
T Consensus 52 ~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~ 114 (147)
T TIGR01144 52 AQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELRKQ 114 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888888888888777777777666666666666665555544333
No 47
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=46.53 E-value=1.4e+02 Score=23.41 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q psy12513 66 QTEADEKLDDIRRKIEEDY 84 (159)
Q Consensus 66 ~QEA~EKA~EI~~KAeEEF 84 (159)
..+|++.++.|...|.++.
T Consensus 106 ~~~A~~e~~~~~~~a~~~i 124 (174)
T PRK07352 106 EKQAIEDMARLKQTAAADL 124 (174)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 48
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=45.35 E-value=1.2e+02 Score=22.00 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhh
Q psy12513 63 AFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSN 120 (159)
Q Consensus 63 ~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn 120 (159)
.-...+|+..+.+|...|.++-+-++..++.+-+..+....+.-..+++.++.-..+.
T Consensus 57 ~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~ 114 (132)
T PF00430_consen 57 EEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKE 114 (132)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777777777777666666666666665544433
No 49
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=44.95 E-value=1.4e+02 Score=23.03 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=6.0
Q ss_pred HhHHHHHHHHHHHH
Q psy12513 89 ERVTRDGKASVDEE 102 (159)
Q Consensus 89 ~kLV~~EK~kI~~e 102 (159)
.+++++-+..|..+
T Consensus 103 ~~~~~~a~~~I~~e 116 (164)
T PRK14473 103 EKIKEEARAQAEQE 116 (164)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 50
>PF04997 RNA_pol_Rpb1_1: RNA polymerase Rpb1, domain 1; InterPro: IPR007080 RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which is a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand [, ].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2Y0S_W 3QQC_A 1YNJ_D 1HQM_D 1YNN_D 1I6V_D 2GHO_D 2AUJ_D 1ZYR_D 1SMY_D ....
Probab=44.54 E-value=5.5 Score=32.08 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=23.8
Q ss_pred cCCCCCCCCCCCccccccCCCHHHHHHHHHHHHHH
Q psy12513 30 KLPNAPDIFRPPPTLLGMALDDAAVEKQIERMVAF 64 (159)
Q Consensus 30 ~~~~~~~~~~~~~~m~~~alsD~eVqkQIkqMv~F 64 (159)
.+|-||+.+||+-.+.+...+++|....++.++..
T Consensus 235 ~lpVpP~~~RP~v~~~~~~~~eddlt~~~~~Ii~~ 269 (337)
T PF04997_consen 235 VLPVPPPRFRPSVQLGGGRFSEDDLTSLYRKIIKR 269 (337)
T ss_dssp EEEE-TGGGS-EEEESSSEEEE-HHHHHHHHHHHH
T ss_pred eeecCCceeeeeeeeecccccCchHHHHHHHHHHH
Confidence 89999999997655655446777777777777654
No 51
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=43.65 E-value=1.8e+02 Score=23.73 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERE 89 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~ 89 (159)
-.=|..+|+.+|+.|-..|++++..-+.
T Consensus 32 a~~IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 32 AREILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888754443
No 52
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=42.12 E-value=1.5e+02 Score=22.42 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhh
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNI 121 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~ 121 (159)
..-...+|..++.+|...|.++=+-++..++.+-...+....+.-...++.++.-....+
T Consensus 61 ~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l 120 (156)
T PRK05759 61 YEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREEL 120 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888888888888888888888777777777777777766665544433
No 53
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=42.10 E-value=1.5e+02 Score=27.22 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhh
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNI 121 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~ 121 (159)
..-+..+|+.++.+|-..|.++=+-++..+..+-+..+....+.-.++++.++.-....+
T Consensus 58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~el 117 (445)
T PRK13428 58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQL 117 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777778888888877777777777777766666666666666666554443333
No 54
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=40.45 E-value=2.1e+02 Score=23.89 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q psy12513 59 ERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGK 96 (159)
Q Consensus 59 kqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK 96 (159)
.+...=|..+|++.|+.+...|.++-+.|+.+.+++=+
T Consensus 85 ~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~ 122 (246)
T TIGR03321 85 QAERQRLLDEAREEADEIREKWQEALRREQAALSDELR 122 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566667777777777777777777777665443
No 55
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=40.24 E-value=1.3e+02 Score=21.70 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Q psy12513 65 IQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEY 103 (159)
Q Consensus 65 I~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eY 103 (159)
|..+|.+.|+.+......+.+-|=.+++.+-...|..+-
T Consensus 70 i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~ 108 (132)
T PF00430_consen 70 IIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEK 108 (132)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444445554444444443
No 56
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=37.95 E-value=2e+02 Score=22.61 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYR 108 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeK 108 (159)
..-|..+|.+.|+.+...+.++.+-|-.+++++-+..|..+-++=..
T Consensus 86 a~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~ 132 (175)
T PRK14472 86 ADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALD 132 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666655544443
No 57
>KOG1029|consensus
Probab=36.48 E-value=1.8e+02 Score=30.28 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhHHHHHHHHHhHHHHHHHHHHHHHHHHhHh
Q psy12513 52 AAVEKQIERMVAFIQTEADEKLDDIRR-----------------KIEEDYQIERERVTRDGKASVDEEYAKKYRQ 109 (159)
Q Consensus 52 ~eVqkQIkqMv~FI~QEA~EKA~EI~~-----------------KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKq 109 (159)
+.+-++|+.-++-|..|-.-|..||++ +-+++|.+|..++++.|+..+.-.|+++.++
T Consensus 541 e~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ke~e~ 615 (1118)
T KOG1029|consen 541 ELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGEKEAES 615 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
No 58
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=35.91 E-value=2.2e+02 Score=23.59 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=40.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy12513 47 MALDDAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKK 106 (159)
Q Consensus 47 ~alsD~eVqkQIkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKK 106 (159)
-+.+--+..+||.+..+|++.-|.-|..-|- |-.+.++++-.+|.++++..
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~---------eQi~~Lq~QA~~ile~~~~~ 78 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIA---------EQIRFLQEQARKILEEAERN 78 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHHHHHHHHHh
Confidence 3455567889999999999999999999887 56677788888888776643
No 59
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=35.51 E-value=2.1e+02 Score=22.17 Aligned_cols=40 Identities=8% Similarity=0.123 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy12513 68 EADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKY 107 (159)
Q Consensus 68 EA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKe 107 (159)
+|.+.|+.+...+.++..-|-.+++++-+..|..+-.+=.
T Consensus 96 ~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~ 135 (156)
T CHL00118 96 QSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKAL 135 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444445555555555554444433
No 60
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=34.61 E-value=1.9e+02 Score=21.48 Aligned_cols=15 Identities=0% Similarity=0.280 Sum_probs=6.2
Q ss_pred HHhHHHHHHHHHHHH
Q psy12513 88 RERVTRDGKASVDEE 102 (159)
Q Consensus 88 K~kLV~~EK~kI~~e 102 (159)
-.+++.+-+..|..+
T Consensus 99 a~~~~~~a~~~i~~e 113 (140)
T PRK07353 99 AQASKEKARREIEQQ 113 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 61
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=34.13 E-value=2.9e+02 Score=23.45 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q psy12513 59 ERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASV 99 (159)
Q Consensus 59 kqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI 99 (159)
.+...=|..+|++-+..+..+|.++.+-||.+.+.+=+..+
T Consensus 85 ~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v 125 (250)
T PRK14474 85 DEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQT 125 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555444433
No 62
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=33.66 E-value=2.2e+02 Score=21.88 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHH
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRH 114 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qK 114 (159)
..-+.++|..+|..+...|.++-+-|..+++++-+..++.+.++=..+++.++
T Consensus 64 ~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~ 116 (141)
T PRK08476 64 IETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQK 116 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888888888888888888888888877777776666554
No 63
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=32.85 E-value=2.5e+02 Score=22.17 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHHHHHHHH
Q psy12513 66 QTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMR 131 (159)
Q Consensus 66 ~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqaRLkvL~ 131 (159)
..||+++|.+|-..|..+=. .+.+.-+....++-+++.++...+-..+++..+..-|..+-.
T Consensus 67 l~~Ar~~a~~Ii~~A~~~a~----~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~ 128 (161)
T COG0711 67 LEEAREQASEIIEQAKKEAE----QIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAE 128 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888877776643 444555566667777777777777777777777766665543
No 64
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.41 E-value=3.6e+02 Score=23.99 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=24.2
Q ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH----------HHHhHhHHHH
Q psy12513 71 EKLDDIRRKIEEDYQIERERVTRDGKASVDEEY----------AKKYRQVELR 113 (159)
Q Consensus 71 EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eY----------eKKeKqve~q 113 (159)
-|.+||-....||. .+ |.+|-.-.+..| +.|++.+|-|
T Consensus 115 KksKEi~~q~~eeL----lk-V~~ELqt~mktYh~y~~e~~~ae~Klk~aE~q 162 (263)
T cd07682 115 KKSKEVGLQLQEDL----MK-VLNELYTVMKTYHMYNADSISAQSKLKEAEKQ 162 (263)
T ss_pred HHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999887775 23 334444444444 6777777755
No 65
>PRK00106 hypothetical protein; Provisional
Probab=29.46 E-value=5.2e+02 Score=24.88 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhHHHHHH
Q psy12513 68 EADEKLDDIRRKIEEDYQI 86 (159)
Q Consensus 68 EA~EKA~EI~~KAeEEFnI 86 (159)
||++...+....|++|+..
T Consensus 65 EAke~~ke~~lEaeeEi~~ 83 (535)
T PRK00106 65 ESKALKKELLLEAKEEARK 83 (535)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433
No 66
>PRK00106 hypothetical protein; Provisional
Probab=28.83 E-value=4.8e+02 Score=25.10 Aligned_cols=11 Identities=18% Similarity=0.447 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy12513 67 TEADEKLDDIR 77 (159)
Q Consensus 67 QEA~EKA~EI~ 77 (159)
.+|+.+|++|.
T Consensus 49 eeAe~eAe~I~ 59 (535)
T PRK00106 49 GKAERDAEHIK 59 (535)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 67
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=28.70 E-value=3.1e+02 Score=21.98 Aligned_cols=54 Identities=11% Similarity=0.096 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy12513 62 VAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHR 115 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKk 115 (159)
..-+..+|+..+.+|-..|.++-+-++..++.+-...+......=+++++..+.
T Consensus 88 ye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~ 141 (181)
T PRK13454 88 YNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRA 141 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777777777666666555555554444444443
No 68
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=27.53 E-value=2.7e+02 Score=20.90 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhhHHH
Q psy12513 67 TEADEKLDDIRRKIEED 83 (159)
Q Consensus 67 QEA~EKA~EI~~KAeEE 83 (159)
.+|++.+..+...|..+
T Consensus 83 ~~a~~e~~~~~~~a~~~ 99 (147)
T TIGR01144 83 AEAREEREKIKAQARAE 99 (147)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 69
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=26.56 E-value=4.7e+02 Score=23.40 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=59.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhh
Q psy12513 43 TLLGMALDDAAVEKQIERMVAFIQTEADEKL-DDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNI 121 (159)
Q Consensus 43 ~m~~~alsD~eVqkQIkqMv~FI~QEA~EKA-~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~ 121 (159)
++|..+-|..+.++-+++-++|+.+-+..-. +||...-+.--+..+.+ ++.+.......++.+...++-.-+|+.+.-
T Consensus 154 ~lS~~A~ta~~A~~lL~~YI~fv~~~~~~~l~~~i~~~~~~~~~~l~~~-~~~~~~~ak~~~~~~i~rl~~AL~IA~aag 232 (342)
T PRK11638 154 SVKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQ-VKRQEAVAKAIYDREVNSVEQALKIAEQQG 232 (342)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5777899999999999999999998875443 35555544444444433 344555678889999999998888888776
Q ss_pred hhH
Q psy12513 122 KSE 124 (159)
Q Consensus 122 iNq 124 (159)
+++
T Consensus 233 I~~ 235 (342)
T PRK11638 233 ISR 235 (342)
T ss_pred CCC
Confidence 663
No 70
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=25.36 E-value=69 Score=27.17 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy12513 48 ALDDAAVEKQIERMVAFIQTEADEK 72 (159)
Q Consensus 48 alsD~eVqkQIkqMv~FI~QEA~EK 72 (159)
-+.|.+..++ +..||.|||..-
T Consensus 53 ~i~D~~L~~~---i~~FIgQEA~H~ 74 (253)
T PF10118_consen 53 QIKDPELREE---IKGFIGQEAMHS 74 (253)
T ss_pred hCCCHHHHHH---HHHHHHHHHHHH
Confidence 4577777766 569999999764
No 71
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=25.25 E-value=4.3e+02 Score=22.54 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=32.5
Q ss_pred CCCCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q psy12513 32 PNAPDIFRPPPTLLGMALDDAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGK 96 (159)
Q Consensus 32 ~~~~~~~~~~~~m~~~alsD~eVqkQIkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK 96 (159)
+-+|+||..+|..+ | .++...|..++..++..-..+..-++ .+.-||..|..+++
T Consensus 192 ~~~~~ip~~tpLP~---L--~~~~~rL~~~l~~le~~~~~~~~~l~-----~l~~E~~~I~~re~ 246 (254)
T PF15458_consen 192 YKPPPIPKITPLPS---L--SECLERLRESLSSLEDSKSQLQQQLE-----SLEKEKEEIEEREK 246 (254)
T ss_pred cCCCCCcccCCCCc---h--hHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 34455555544432 1 23337899999888887766665554 45556666665554
No 72
>KOG3990|consensus
Probab=24.97 E-value=3e+02 Score=24.87 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q psy12513 57 QIERMVAFIQTEADEKLDDI-RRKIEEDYQ 85 (159)
Q Consensus 57 QIkqMv~FI~QEA~EKA~EI-~~KAeEEFn 85 (159)
.+++|.+-=.|+--||-+.| +.||++||+
T Consensus 236 ~Lkk~L~qkdq~ileKdkqisnLKad~e~~ 265 (305)
T KOG3990|consen 236 RLKKLLHQKDQLILEKDKQISNLKADKEYQ 265 (305)
T ss_pred HHHHHHhhhHHHHHhhhhhhhccCcchhHH
Confidence 45666666666666776666 568888888
No 73
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=24.81 E-value=5.6e+02 Score=23.71 Aligned_cols=26 Identities=15% Similarity=0.452 Sum_probs=13.4
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHH
Q psy12513 75 DIRRKIEEDYQIERERVTRDGKASVD 100 (159)
Q Consensus 75 EI~~KAeEEFnIEK~kLV~~EK~kI~ 100 (159)
+....=.++|+-++..+-+.-..++.
T Consensus 307 ~~~~~~~~e~~~~~~~l~~~~~~~L~ 332 (582)
T PF09731_consen 307 ELEEELREEFEREREELEEKYEEELR 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555565555555554444444
No 74
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=24.52 E-value=3.3e+02 Score=20.92 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhhHHH
Q psy12513 68 EADEKLDDIRRKIEED 83 (159)
Q Consensus 68 EA~EKA~EI~~KAeEE 83 (159)
+|+.+|.+|-..|..+
T Consensus 65 ~A~~ea~~ii~~A~~~ 80 (159)
T PRK09173 65 EAEKEAADIVAAAERE 80 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 75
>PRK06937 type III secretion system protein; Reviewed
Probab=23.55 E-value=4e+02 Score=21.51 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Q psy12513 65 IQTEADEKLDDIRRKIEEDYQIERERVTRDGKA 97 (159)
Q Consensus 65 I~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~ 97 (159)
|.-+|++.|++|...|+++|+-.+..=.++...
T Consensus 35 il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~~ 67 (204)
T PRK06937 35 LVEAARQRAEEIEAEAQEVYEQQKQLGYQAGLD 67 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999997766555544433
No 76
>KOG1854|consensus
Probab=22.25 E-value=8.1e+02 Score=24.62 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------HHHH-hHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhh
Q psy12513 57 QIERMVAFIQTEADEKLDDIRRKIEEDYQ----------IERE-RVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKS 123 (159)
Q Consensus 57 QIkqMv~FI~QEA~EKA~EI~~KAeEEFn----------IEK~-kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iN 123 (159)
.+..--.=|.+|++.++.+|+.+.+-|-. .+.- ..|++++.-..-+|++|.....+|.|=-+|..+.
T Consensus 367 ~~~~h~~~~~~E~~~~~~~~~~~~~~el~~ql~~qa~ah~dhik~vvr~q~q~~~~e~~~~~~e~~l~ernl~~~qvg 444 (657)
T KOG1854|consen 367 ELEAHRRELQQELFKLIEEIRSSSKNELRNQLKRQAKAHLDHIKDVVRQQEQLLTIEFKQKLEEAVLQERNLHSSQVG 444 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchHhHHH
Confidence 34444445777888888888776665432 2322 3577777778889999999999999988888887
No 77
>PF15155 MRFAP1: MORF4 family-associated protein1
Probab=22.21 E-value=1.5e+02 Score=23.61 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhHH
Q psy12513 65 IQTEADEKLDDIRRKIEE 82 (159)
Q Consensus 65 I~QEA~EKA~EI~~KAeE 82 (159)
.-.+|++||.|+-..|+-
T Consensus 96 ~cekaeeKA~E~AkMaem 113 (127)
T PF15155_consen 96 RCEKAEEKAAEAAKMAEM 113 (127)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356789999998877753
No 78
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=21.77 E-value=4e+02 Score=20.86 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=40.0
Q ss_pred HHHHHHH-HHHHHHH--HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy12513 56 KQIERMV-AFIQTEA--DEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHR 115 (159)
Q Consensus 56 kQIkqMv-~FI~QEA--~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKk 115 (159)
+|+++=| .++..-| +.||+|....-+.-|- +=-.-|++|+.+++.-...++||+|.+-+
T Consensus 29 kq~q~~I~q~L~eRA~~d~kaRE~l~rLd~aFP-~G~~~~~qE~~k~m~~i~~~FKQLEt~LK 90 (107)
T PRK15365 29 HQIRAKVSQQLAERAESPKKSRETESILHNLFP-QGVAGVNQEAEKDLKKIVSLFKQLEVRLK 90 (107)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCc-chhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 4444433 4688888888887773 22233688999999999999999987643
No 79
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.48 E-value=3.2e+02 Score=21.54 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhHhHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q psy12513 95 GKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRLNAAR 136 (159)
Q Consensus 95 EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqaRLkvL~aRd~~ 136 (159)
|+.+..++-++|.+.-+-.+.-..|+.-.+.|| |..+++.
T Consensus 51 ER~K~E~~~q~r~rES~~Er~K~~~s~~~~q~L--m~rQN~m 90 (121)
T PF10669_consen 51 ERSKKEEKRQKRNRESKRERQKFIWSMNKQQSL--MNRQNNM 90 (121)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhHHhhhhHHHHH--HHHHhHH
Confidence 344444444444444444444444444444444 4444443
No 80
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=21.41 E-value=7.7e+02 Score=24.09 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH---HHHHH-------hHhHHHHHHhh
Q psy12513 48 ALDDAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDE---EYAKK-------YRQVELRHRTD 117 (159)
Q Consensus 48 alsD~eVqkQIkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~---eYeKK-------eKqve~qKkI~ 117 (159)
...+.+.+.-|..|+.++..-+.+||+.+...-+..++-=-.-+++.+-.+|.. .|+.- .+.++...-++
T Consensus 383 ~~~n~e~~~~~~~~~~~al~s~~eka~l~~~~Eerkm~rL~~~~iq~qleKlk~Kl~~~k~L~~~~~L~rqeLd~nlll~ 462 (531)
T COG5259 383 SHINRESQEHIEEVIEYALDSGKEKAKLQATNEERKMERLRNVLIQAQLEKLKMKLGHLKELEKSTSLERQELDANLLLR 462 (531)
T ss_pred ecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888999999999999999988766666554444555555555542 22222 23333333344
Q ss_pred hhhh--hhHHHHHHHHHhhhhhhccCCce
Q psy12513 118 CSNI--KSEGRMNVMRLNAARWSYDTGRI 144 (159)
Q Consensus 118 ~Sn~--iNqaRLkvL~aRd~~~~~~~~~~ 144 (159)
+++. ++-+--++|.++-.+++.|.|.+
T Consensus 463 rl~~~e~l~~~~e~l~~~~nl~~~~~gk~ 491 (531)
T COG5259 463 RLNAEEKLFAIDEVLSKCLNLISDDQGKN 491 (531)
T ss_pred HHhHHHHHHHHHHHHHHHhhhhhhccCCC
Confidence 4443 45555677888888888888765
No 81
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=21.15 E-value=4.2e+02 Score=20.93 Aligned_cols=9 Identities=0% Similarity=0.021 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy12513 91 VTRDGKASV 99 (159)
Q Consensus 91 LV~~EK~kI 99 (159)
++.+-+..|
T Consensus 124 ~~~~A~~~I 132 (184)
T PRK13455 124 RLAAAEDQI 132 (184)
T ss_pred HHHHHHHHH
Confidence 333333333
No 82
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=20.87 E-value=91 Score=23.63 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.4
Q ss_pred cCCCHHHHHHHHHHHHH
Q psy12513 47 MALDDAAVEKQIERMVA 63 (159)
Q Consensus 47 ~alsD~eVqkQIkqMv~ 63 (159)
-.|||+|+.+||+.+++
T Consensus 10 p~lt~~~i~~QI~yll~ 26 (99)
T cd03527 10 PPLTDEQIAKQIDYIIS 26 (99)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 46899999999998864
Done!