Query psy12513
Match_columns 159
No_of_seqs 112 out of 164
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 21:14:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 6.7E-28 2.3E-32 194.5 13.7 93 46-138 5-97 (233)
2 2dm9_A V-type ATP synthase sub 98.3 7.6E-08 2.6E-12 72.8 0.0 75 53-138 10-84 (198)
3 3v6i_A V-type ATP synthase sub 97.2 0.0041 1.4E-07 48.1 10.9 75 60-138 2-80 (187)
4 4e29_A Chimeric WZZB chain len 69.9 46 0.0016 27.5 10.8 84 41-125 86-170 (248)
5 3b8m_A Ferric enterobactin (en 69.1 47 0.0016 27.3 10.5 81 43-124 122-203 (280)
6 2kk7_A V-type ATP synthase sub 66.6 22 0.00077 22.7 6.5 38 58-99 8-45 (52)
7 3b8o_A Lipopolysaccharide bios 63.6 48 0.0016 26.9 9.1 79 43-122 107-186 (265)
8 3v6i_A V-type ATP synthase sub 62.2 48 0.0016 25.0 12.7 60 59-118 12-71 (187)
9 1l2p_A ATP synthase B chain; a 49.2 47 0.0016 20.8 7.0 38 65-102 14-51 (61)
10 2dm9_A V-type ATP synthase sub 36.3 7.5 0.00026 28.6 0.0 35 60-94 32-66 (198)
11 2kk7_A V-type ATP synthase sub 26.7 82 0.0028 19.9 3.8 28 59-86 20-47 (52)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=99.95 E-value=6.7e-28 Score=194.46 Aligned_cols=93 Identities=26% Similarity=0.467 Sum_probs=91.2
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHH
Q psy12513 46 GMALDDAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEG 125 (159)
Q Consensus 46 ~~alsD~eVqkQIkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqa 125 (159)
.+||||+||++||+||++||+|||+|||+||..+|+|||++||+++|++++.+|+++|++++++++++++|+.|+..|++
T Consensus 5 ~~al~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~a 84 (233)
T 4efa_E 5 ITALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKM 84 (233)
T ss_dssp BCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhh
Q psy12513 126 RMNVMRLNAARWS 138 (159)
Q Consensus 126 RLkvL~aRd~~~~ 138 (159)
|+++|.+|+++++
T Consensus 85 R~~vL~ar~e~i~ 97 (233)
T 4efa_E 85 RLKVLSAREQSLD 97 (233)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 2
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=98.31 E-value=7.6e-08 Score=72.80 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhhhhHHHHHHHHH
Q psy12513 53 AVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNIKSEGRMNVMRL 132 (159)
Q Consensus 53 eVqkQIkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~iNqaRLkvL~a 132 (159)
++..+-+++.+||.+||+++|++|...|.++|+.|+.+++++.+ ++++..++...|+..|+.|..++.+
T Consensus 10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~-----------~e~~~~~~~~~s~~~~~~r~~~l~~ 78 (198)
T 2dm9_A 10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAK-----------TQAELEKQRIIANARLEVRRKRLAI 78 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999884 4566778888999999999999999
Q ss_pred hhhhhh
Q psy12513 133 NAARWS 138 (159)
Q Consensus 133 Rd~~~~ 138 (159)
|++++.
T Consensus 79 ~~ev~~ 84 (198)
T 2dm9_A 79 QEEIIS 84 (198)
T ss_dssp --CHHH
T ss_pred HHHHHH
Confidence 988775
No 3
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=97.22 E-value=0.0041 Score=48.05 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHH----HHHhhhhhhhhHHHHHHHHHhhh
Q psy12513 60 RMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVEL----RHRTDCSNIKSEGRMNVMRLNAA 135 (159)
Q Consensus 60 qMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~----qKkI~~Sn~iNqaRLkvL~aRd~ 135 (159)
++.+-|+.||+++|++|-..|+++ -..|+.+.+.+....++...+.++. ......|+.-+++|.++|.+|++
T Consensus 2 ~~~~~l~~eA~~~a~~I~~eA~~~----a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e 77 (187)
T 3v6i_A 2 KLEAILSQEVEAEIQALLQEAEAK----AEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE 77 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888765 5677777777777776666555444 44566899999999999999999
Q ss_pred hhh
Q psy12513 136 RWS 138 (159)
Q Consensus 136 ~~~ 138 (159)
+++
T Consensus 78 li~ 80 (187)
T 3v6i_A 78 VLE 80 (187)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 4
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=69.95 E-value=46 Score=27.51 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=61.3
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhh
Q psy12513 41 PPTLLGMALDDAAVEKQIERMVAFIQTEADEKL-DDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCS 119 (159)
Q Consensus 41 ~~~m~~~alsD~eVqkQIkqMv~FI~QEA~EKA-~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~S 119 (159)
+..+|..+-+..+.++.+++.++|+.+.+..-. .+|...-+..-.-.+. -+..++......++.++..++-.-+|+.+
T Consensus 86 ~~~LSfsA~ta~~Aq~lL~~YI~fv~~~v~~el~~~l~~~i~~r~~~l~~-ql~~~~~~ak~qr~~rI~rL~~AL~IA~a 164 (248)
T 4e29_A 86 PLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELERDLKDNIALGRKNLQD-SLRTQEVVAQEQKDLRIRQIEEALRYADE 164 (248)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778899999999999999999988765433 3555554444333333 34556677888999999999998899887
Q ss_pred hhhhHH
Q psy12513 120 NIKSEG 125 (159)
Q Consensus 120 n~iNqa 125 (159)
.-+++-
T Consensus 165 aGI~kP 170 (248)
T 4e29_A 165 AKITQP 170 (248)
T ss_dssp HTCCSC
T ss_pred cCCCCC
Confidence 666553
No 5
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=69.05 E-value=47 Score=27.32 Aligned_cols=81 Identities=12% Similarity=0.187 Sum_probs=62.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhh
Q psy12513 43 TLLGMALDDAAVEKQIERMVAFIQTEADEKL-DDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNI 121 (159)
Q Consensus 43 ~m~~~alsD~eVqkQIkqMv~FI~QEA~EKA-~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~ 121 (159)
+++..+-+..+.++-+++-++|+.+.+..-. .+|...-+..=...+.+ +..+.......++.++.+++-.-+|+.+.-
T Consensus 122 ~lsf~a~t~~~A~~lL~~YI~fv~~~~~~~l~~~l~~~i~~r~~~l~~q-i~~~~~~ak~~~~~~I~rL~~AL~IA~aag 200 (280)
T 3b8m_A 122 TLSFTAPTSEEAQTVLSGYIDYISALVVKESIENVRNKLEIKTQFEKEK-LAQDRIKMKNQLDANIQRLNYSLDIANAAG 200 (280)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6777899999999999999999999888777 67776665433333443 445666788889999999999999988855
Q ss_pred hhH
Q psy12513 122 KSE 124 (159)
Q Consensus 122 iNq 124 (159)
+++
T Consensus 201 I~k 203 (280)
T 3b8m_A 201 IKK 203 (280)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 6
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=66.57 E-value=22 Score=22.66 Aligned_cols=38 Identities=13% Similarity=0.335 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q psy12513 58 IERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASV 99 (159)
Q Consensus 58 IkqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI 99 (159)
|..++.=|..+|+.+|.+|-..|+.+ -..++...+.+.
T Consensus 8 le~i~~kI~~eA~~eA~~Il~eA~~e----A~~Ii~eA~~~A 45 (52)
T 2kk7_A 8 VDKIKSKILDDAKAEANKIISEAEAE----KAKILEKAKEEA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 56677778899999999999888775 345555544443
No 7
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=63.57 E-value=48 Score=26.90 Aligned_cols=79 Identities=11% Similarity=0.168 Sum_probs=52.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhh
Q psy12513 43 TLLGMALDDAAVEKQIERMVAFIQTEADEKL-DDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNI 121 (159)
Q Consensus 43 ~m~~~alsD~eVqkQIkqMv~FI~QEA~EKA-~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~ 121 (159)
++|..+-+..+.++-+.+-++|+.+.+..-. .+|...-...=...+.+ +..+.......++.++.+++-.-+|+.+.-
T Consensus 107 ~ls~~a~t~~~A~~lL~~YI~~v~~~~~~~l~~~l~~~~~~r~~~l~~q-i~~~~~~ak~~~~~~i~rl~~AL~IA~aag 185 (265)
T 3b8o_A 107 SVKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQ-VKRQEEVAKAIYDRRMNSIEQALKIAEQHN 185 (265)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHC---------
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6788899999999999999999999887776 67766655333333333 355566677888888888888888887754
Q ss_pred h
Q psy12513 122 K 122 (159)
Q Consensus 122 i 122 (159)
+
T Consensus 186 I 186 (265)
T 3b8o_A 186 I 186 (265)
T ss_dssp -
T ss_pred C
Confidence 4
No 8
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=62.18 E-value=48 Score=24.99 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhh
Q psy12513 59 ERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDC 118 (159)
Q Consensus 59 kqMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~ 118 (159)
+.=.+-|..||+++|++|-..|.++=.-.+....+.....+...+++....+.++.|...
T Consensus 12 ~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~ 71 (187)
T 3v6i_A 12 EAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATAR 71 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456778888888888888888877777777777777777777776666666555443
No 9
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=49.16 E-value=47 Score=20.85 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Q psy12513 65 IQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEE 102 (159)
Q Consensus 65 I~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~e 102 (159)
|..+|...+..|...+..+=.-|-.+++.+-+..|..+
T Consensus 14 Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~e 51 (61)
T 1l2p_A 14 IIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444444444443
No 10
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=36.32 E-value=7.5 Score=28.64 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q psy12513 60 RMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRD 94 (159)
Q Consensus 60 qMv~FI~QEA~EKA~EI~~KAeEEFnIEK~kLV~~ 94 (159)
++++=.++||+.-..++..+|..+-+.++.+....
T Consensus 32 ~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~ 66 (198)
T 2dm9_A 32 KIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIAN 66 (198)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444434455555555544444444443
No 11
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=26.67 E-value=82 Score=19.93 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy12513 59 ERMVAFIQTEADEKLDDIRRKIEEDYQI 86 (159)
Q Consensus 59 kqMv~FI~QEA~EKA~EI~~KAeEEFnI 86 (159)
++=..-|..+|+.+|++|-..|.++=.-
T Consensus 20 ~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 20 KAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778999999999999998887443
Done!