Query psy12513
Match_columns 159
No_of_seqs 112 out of 164
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 21:14:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12513.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12513hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l2pa_ f.23.21.1 (A:) F1F0 AT 43.6 33 0.0024 21.3 6.7 41 65-105 14-54 (61)
2 d1cora_ a.3.1.1 (A:) Cytochrom 39.6 16 0.0011 22.1 3.6 37 24-67 43-80 (82)
3 d3b8pa1 d.58.60.1 (A:54-292) C 38.2 42 0.0031 25.0 6.7 82 41-123 78-160 (239)
4 d1wqga1 d.67.3.1 (A:2-184) Rib 33.2 79 0.0058 22.7 8.7 49 62-110 127-181 (183)
5 d1ge9a_ d.67.3.1 (A:) Ribosome 29.7 92 0.0067 22.3 7.3 52 59-110 127-181 (184)
6 d3b8oa1 d.58.60.1 (A:55-319) L 28.8 1.1E+02 0.0079 22.9 10.0 81 43-124 107-188 (265)
7 d1ynra1 a.3.1.1 (A:1-80) Cytoc 20.6 43 0.0032 20.0 3.2 18 46-67 61-78 (80)
8 d1bxni_ d.73.1.1 (I:) Ribulose 20.0 30 0.0022 24.5 2.6 17 47-63 12-28 (129)
9 d3b8ma1 d.58.60.1 (A:64-330) E 17.7 1.8E+02 0.013 21.4 10.7 81 43-124 110-191 (267)
10 d1f1fa_ a.3.1.1 (A:) Cytochrom 17.2 48 0.0035 19.5 2.8 19 48-70 67-85 (88)
No 1
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=43.59 E-value=33 Score=21.27 Aligned_cols=41 Identities=17% Similarity=0.356 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12513 65 IQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAK 105 (159)
Q Consensus 65 I~QEA~EKA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeK 105 (159)
|..+|+.-+.+|-.-|-++=..|..+++.+-+..|..+..+
T Consensus 14 Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~ 54 (61)
T d1l2pa_ 14 IIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKR 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555666666766666666665543
No 2
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}
Probab=39.62 E-value=16 Score=22.10 Aligned_cols=37 Identities=5% Similarity=-0.000 Sum_probs=22.2
Q ss_pred hhhhhhcCCCCCCCCCCC-ccccccCCCHHHHHHHHHHHHHHHHH
Q psy12513 24 TFRSFLKLPNAPDIFRPP-PTLLGMALDDAAVEKQIERMVAFIQT 67 (159)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~-~~m~~~alsD~eVqkQIkqMv~FI~Q 67 (159)
.+..+++-|.+. +++ ..|-...|||+| |..+++||..
T Consensus 43 ~l~~~i~~~~~~---~~~~~~Mp~~~lsdee----i~~la~Yi~S 80 (82)
T d1cora_ 43 LLAGHIKNGSQG---VWGPIPMPPNPVTEEE----AKILAEWILS 80 (82)
T ss_dssp HHHHHHHSCBCS---SSSSSCBCCCSCCHHH----HHHHHHHHHS
T ss_pred HHHHHHhccccc---ccccccccccCCCHHH----HHHHHHHHHh
Confidence 356666555443 222 335567899966 5568888863
No 3
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB {Salmonella typhimurium [TaxId: 90371]}
Probab=38.18 E-value=42 Score=25.04 Aligned_cols=82 Identities=12% Similarity=0.191 Sum_probs=49.0
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhh
Q psy12513 41 PPTLLGMALDDAAVEKQIERMVAFIQTEADEKL-DDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCS 119 (159)
Q Consensus 41 ~~~m~~~alsD~eVqkQIkqMv~FI~QEA~EKA-~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~S 119 (159)
+.++|..+-+..+.++-+++-++||.+.+..-. .+|...-+..-...+.++ ...+......++.+..+++-.-+|+.+
T Consensus 78 ~~~lsf~a~ta~~A~~lL~~YI~fv~~~~~~~l~~~i~~~i~~~~~~l~~~~-~~~~~~ak~~~~~~I~~l~~AL~IA~~ 156 (239)
T d3b8pa1 78 PLSVSYVSTTAEGAQRRLAEYIQQVDEEVAKELEVDLKDNITLQTKTLQESL-ETQEVVAQEQKDLRIKQIEEALRYADE 156 (239)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSSCCSSTTT
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999988764322 234333332222223222 333344555666666666665566665
Q ss_pred hhhh
Q psy12513 120 NIKS 123 (159)
Q Consensus 120 n~iN 123 (159)
.-++
T Consensus 157 agI~ 160 (239)
T d3b8pa1 157 AKIT 160 (239)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 5444
No 4
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=33.24 E-value=79 Score=22.68 Aligned_cols=49 Identities=27% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHH----HhhHHHHHHHH--HhHHHHHHHHHHHHHHHHhHhH
Q psy12513 62 VAFIQTEADEKLDDIR----RKIEEDYQIER--ERVTRDGKASVDEEYAKKYRQV 110 (159)
Q Consensus 62 v~FI~QEA~EKA~EI~----~KAeEEFnIEK--~kLV~~EK~kI~~eYeKKeKqv 110 (159)
+.-|+++|.++.+-.+ ..-++.|..|+ ..+......+|++-+..|+|.+
T Consensus 127 iRniR~~~~~~lk~~~k~~~iseD~~~~~~~~iq~ltd~~~~~id~~~~~KekEi 181 (183)
T d1wqga1 127 VRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGEL 181 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666665554 23445555444 4566677777777777777653
No 5
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}
Probab=29.67 E-value=92 Score=22.32 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hHHHHHHHH--HhHHHHHHHHHHHHHHHHhHhH
Q psy12513 59 ERMVAFIQTEADEKLDDIRRK-IEEDYQIER--ERVTRDGKASVDEEYAKKYRQV 110 (159)
Q Consensus 59 kqMv~FI~QEA~EKA~EI~~K-AeEEFnIEK--~kLV~~EK~kI~~eYeKKeKqv 110 (159)
+..+.-|+++|.++.+..+.- -++.|..|+ .++......+|++.+..|+|.+
T Consensus 127 Kv~iRniR~~~~~~lKk~k~iseD~~k~~~~~iqkltd~~~~~id~~~~~Kekei 181 (184)
T d1ge9a_ 127 RVRVRNVRREAKEMIEELEGISEDEKKRALERLQKLTDKYIDEINKLMEAKEKEI 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444667788888777654322 345554444 3566667777777777777653
No 6
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis protein WzzE {Escherichia coli [TaxId: 562]}
Probab=28.80 E-value=1.1e+02 Score=22.88 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=44.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhh
Q psy12513 43 TLLGMALDDAAVEKQIERMVAFIQTEADE-KLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNI 121 (159)
Q Consensus 43 ~m~~~alsD~eVqkQIkqMv~FI~QEA~E-KA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~ 121 (159)
.+|..+-+..+.++-+.+-++|+.+.+.. -..+|...-+.....-+. -+...+......++.+..+++-.-+|+.+.-
T Consensus 107 ~ls~~a~ta~~A~~lL~~YI~~v~~~~~~~l~~~l~~~i~~~~~~l~~-~~~~~~~~ak~~~~~~I~~L~~AL~IA~~ag 185 (265)
T d3b8oa1 107 SVKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKA-QVKRQEEVAKAIYDRRMNSIEQALKIAEQHN 185 (265)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46777899999999999999999876644 223443333332222222 2444555666778888888877777777665
Q ss_pred hhH
Q psy12513 122 KSE 124 (159)
Q Consensus 122 iNq 124 (159)
+++
T Consensus 186 I~~ 188 (265)
T d3b8oa1 186 ISR 188 (265)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 7
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}
Probab=20.60 E-value=43 Score=19.97 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=13.1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHH
Q psy12513 46 GMALDDAAVEKQIERMVAFIQT 67 (159)
Q Consensus 46 ~~alsD~eVqkQIkqMv~FI~Q 67 (159)
...|||+| |+.|++||..
T Consensus 61 ~~~lsd~e----i~~l~~yi~s 78 (80)
T d1ynra1 61 PQNVTDAE----AKQLAQWILS 78 (80)
T ss_dssp CCSCCHHH----HHHHHHHHHT
T ss_pred cccCCHHH----HHHHHHHHHH
Confidence 45788865 5678999863
No 8
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=19.98 E-value=30 Score=24.50 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.8
Q ss_pred cCCCHHHHHHHHHHHHH
Q psy12513 47 MALDDAAVEKQIERMVA 63 (159)
Q Consensus 47 ~alsD~eVqkQIkqMv~ 63 (159)
-.|+|+|+.+||+.+++
T Consensus 12 P~Ltd~~I~~QV~yll~ 28 (129)
T d1bxni_ 12 PELTDEQITKQLEYCLN 28 (129)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 56999999999998875
No 9
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=17.69 E-value=1.8e+02 Score=21.37 Aligned_cols=81 Identities=12% Similarity=0.202 Sum_probs=53.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHhHHHHHHhhhhhh
Q psy12513 43 TLLGMALDDAAVEKQIERMVAFIQTEADE-KLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQVELRHRTDCSNI 121 (159)
Q Consensus 43 ~m~~~alsD~eVqkQIkqMv~FI~QEA~E-KA~EI~~KAeEEFnIEK~kLV~~EK~kI~~eYeKKeKqve~qKkI~~Sn~ 121 (159)
++|..+-+..+.++-+.+-++|+.+.+.. -..+|...-+..-...+.+ +..........++.+..+++-.-+|+.+.-
T Consensus 110 ~LSf~a~t~~~A~~lL~~YI~~v~~~v~~~l~~~~~~~i~~~~~~l~~~-~~~~~~~ak~~~~~~i~~l~~Al~IA~~ag 188 (267)
T d3b8ma1 110 TLSFTAPTSEEAQTVLSGYIDYISALVVKESIENVRNKLEIKTQFEKEK-LAQDRIKMKNQLDANIQRLNYSLDIANAAG 188 (267)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 36677899999999999999999876543 3334443332222222222 333455577788888889999999988776
Q ss_pred hhH
Q psy12513 122 KSE 124 (159)
Q Consensus 122 iNq 124 (159)
+++
T Consensus 189 I~~ 191 (267)
T d3b8ma1 189 IKK 191 (267)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 10
>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]}
Probab=17.24 E-value=48 Score=19.52 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy12513 48 ALDDAAVEKQIERMVAFIQTEAD 70 (159)
Q Consensus 48 alsD~eVqkQIkqMv~FI~QEA~ 70 (159)
.|||+ ||..+++||.+.|+
T Consensus 67 ~Lsd~----ei~~v~aYi~~~a~ 85 (88)
T d1f1fa_ 67 RLSPL----QIEDVAAYVVDQAE 85 (88)
T ss_dssp TSCHH----HHHHHHHHHHHHHH
T ss_pred CCCHH----HHHHHHHHHHHHHH
Confidence 48875 57779999998774
Done!