RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12513
         (159 letters)



>d2ov9a1 d.38.1.5 (A:7-209) Hypothetical protein RHA1_ro05818
          {Rhodococcus sp. RHA1 [TaxId: 101510]}
          Length = 203

 Score = 30.7 bits (69), Expect = 0.054
 Identities = 7/60 (11%), Positives = 21/60 (35%), Gaps = 8/60 (13%)

Query: 24 TFRSFLKLPNAPDIFRPPPTLLGMALDDAAVEKQIERMVAFIQTEAD-EKLDDIRRKIEE 82
          TF +      +  +   PP    +     A  + ++ ++    T+     L+ +  ++  
Sbjct: 2  TFEN----SPSGTVLTSPPDGSAVDRATDAARRVVDALLR---TDRGNANLERVAEELNS 54


>d1enwa_ a.5.4.1 (A:) Elongation factor TFIIS domain 2 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 114

 Score = 27.9 bits (62), Expect = 0.31
 Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 50  DDAAVEKQIERMVAFIQTEADEKLDDIRRKIEEDYQIERERVTRDGKASVDEEYAKKYRQ 109
                ++ ++ +   +  E++     I    +    IE E    +   + +  Y  +YR 
Sbjct: 19  HHKLRDQVLKALYDVLAKESEHPPQSILHTAK---AIESEMNKVNNCDTNEAAYKARYRI 75

Query: 110 VELRHRTDCSNIKSEGRMNVMR 131
           +        SN+ S+   ++  
Sbjct: 76  I-------YSNVISKNNPDLKH 90


>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1
          {Synechocystis sp. pcc 6803 [TaxId: 1148]}
          Length = 127

 Score = 27.5 bits (61), Expect = 0.41
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 33 NAPDIF-RPPPTLLGMALDDAAVEKQIERMVAFIQTEADEKLDDIR 77
          N   I  R P  LLG  L +     QI+ + + +       L+  +
Sbjct: 45 NCTGILGRSPEDLLGRTLGEVFDSFQIDPIQSRLTAGQISSLNPSK 90


>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
           synthetase 1 {Bacillus brevis [TaxId: 1393]}
          Length = 514

 Score = 25.2 bits (54), Expect = 4.8
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 5/40 (12%)

Query: 48  ALDDAAV-----EKQIERMVAFIQTEADEKLDDIRRKIEE 82
            + + AV      ++   + A+  +E    L+ +R+   E
Sbjct: 438 YISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSE 477


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 583,343
Number of extensions: 26781
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 13
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)