BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12515
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 207 bits (528), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/113 (85%), Positives = 108/113 (95%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
DNPPY+KGAF+IEINFPAEYPFKPPKI FKTKIYHPNIDEKGQVCLP+ISAENWKPATKT
Sbjct: 44 DNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKT 103
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPSD 174
DQVIQ+LIALVNDP+PEHPLRADLA+E+ K+RKKF KNAE++TKK+ EKRP D
Sbjct: 104 DQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 156
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 207 bits (527), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/113 (85%), Positives = 108/113 (95%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
DNPPY+KGAF+IEINFPAEYPFKPPKI FKTKIYHPNIDEKGQVCLP+ISAENWKPATKT
Sbjct: 42 DNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKT 101
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPSD 174
DQVIQ+LIALVNDP+PEHPLRADLA+E+ K+RKKF KNAE++TKK+ EKRP D
Sbjct: 102 DQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 81/116 (69%)
Query: 58 LEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKP 117
L D PPY+ AF + I+FP EYPFKPP I F TKIYHPN+DE GQ+CLPIIS+ENWKP
Sbjct: 40 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKP 99
Query: 118 ATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPS 173
TKT QV++AL LVN P PLR DLAD + + F KNAE++T + RPS
Sbjct: 100 CTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS 155
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 81/116 (69%)
Query: 58 LEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKP 117
L D PPY+ AF + I+FP EYPFKPP I F TKIYHPN+DE GQ+CLPIIS+ENWKP
Sbjct: 37 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKP 96
Query: 118 ATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPS 173
TKT QV++AL LVN P PLR DLAD + + F KNAE++T + RPS
Sbjct: 97 CTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS 152
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 72/112 (64%), Gaps = 3/112 (2%)
Query: 63 NPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISA---ENWKPAT 119
N PY KG FK+E+ P YPF+PP+I F T IYHPNID G++CL ++ W+P+
Sbjct: 45 NTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSL 104
Query: 120 KTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKR 171
V+ ++ L+++P P+ PL AD++ EF + F+KNA +T+KH+ ++
Sbjct: 105 NIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK 156
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY+ G F + I+FP++YPFKPPK+NF TKIYHPNI+ +G +CL I+ + W PA
Sbjct: 61 EDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILK-DQWSPALTI 119
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R ++ + A ++++K++
Sbjct: 120 SKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G F + I+FP +YPFKPPK+NF T+IYHPNI+ G +CL I+ + W PA +V
Sbjct: 44 PYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR-DQWSPALTISKV 102
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ ++ +L+ DP P+ PL ++A + +R ++ +A ++T+K++
Sbjct: 103 LLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYA 146
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G F + I+FP +YPFKPPK+ F TKIYHPNI+ G +CL I+ ++ W PA +V
Sbjct: 49 PYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKV 107
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ ++ +L+ DP P+ PL D+A + +++K+ + A ++T+K++
Sbjct: 108 LLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREWTQKYA 151
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVI 125
Y G F + ++FP +YPFKPPKI F TKIYHPNI+ G +CL I+ ++ W PA +V+
Sbjct: 51 YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVL 109
Query: 126 QALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ +L+ DP P+ PL D+A + +++K+ ++A ++T+K++
Sbjct: 110 LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 152
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA
Sbjct: 51 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTI 109
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 110 SKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQKYA 156
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVI 125
Y G F + ++FP +YPFKPPKI F TKIYHPNI+ G +CL I+ ++ W PA +V+
Sbjct: 63 YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVL 121
Query: 126 QALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ +L+ DP P+ PL D+A + +++K+ ++A ++T+K++
Sbjct: 122 LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 164
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVI 125
Y G F + ++FP +YPFKPPKI F TKIYHPNI+ G +CL I+ ++ W PA +V+
Sbjct: 47 YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVL 105
Query: 126 QALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ +L+ DP P+ PL D+A + +++K+ ++A ++T+K++
Sbjct: 106 LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 148
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA
Sbjct: 46 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTI 104
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 105 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 151
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA
Sbjct: 59 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTI 117
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 118 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA
Sbjct: 41 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTI 99
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 100 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA
Sbjct: 43 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTI 101
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 102 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA
Sbjct: 43 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTI 101
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 102 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA
Sbjct: 43 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTI 101
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 102 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA
Sbjct: 43 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WGPALTI 101
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 102 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G F + I+FP +YPFKPPKI+F TKIYHPNI+ G +CL I+ + W PA +V
Sbjct: 45 PYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILK-DQWSPALTLSKV 103
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ ++ +L+ D P+ PL ++A + +R K+ A ++TKK++
Sbjct: 104 LLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 51 FQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII 110
+Y+ +E + PY G F++E+ P +YP + PK+ F TKIYHPNID G++CL ++
Sbjct: 34 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL 93
Query: 111 SAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170
NW PA + V+ ++ AL+ P P PL D+A++++K + A ++TK +++K
Sbjct: 94 KT-NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152
Query: 171 RP 172
+P
Sbjct: 153 KP 154
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA
Sbjct: 51 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTI 109
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R K+ + + ++T+K++
Sbjct: 110 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 156
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA +V
Sbjct: 47 PYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKV 105
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ ++ +L+ DP P+ PL ++A + +R+++ + A ++T+K++
Sbjct: 106 LLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 149
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 51 FQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII 110
+Y+ +E + PY G F++E+ P +YP + PK+ F TKIYHPNID G++CL ++
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL 91
Query: 111 SAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170
NW PA + V+ ++ AL+ P P PL D+A++++K + A ++TK +++K
Sbjct: 92 KT-NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 150
Query: 171 RP 172
+P
Sbjct: 151 KP 152
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA
Sbjct: 43 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTI 101
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R K+ + + ++T+K++
Sbjct: 102 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 148
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA
Sbjct: 40 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTI 98
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R K+ + + ++T+K++
Sbjct: 99 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 145
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ ++ W PA
Sbjct: 49 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTI 107
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R K+ + + ++T+K++
Sbjct: 108 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 154
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL + ++ W PA
Sbjct: 43 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQ-WSPALTI 101
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 102 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G + L I+ ++ W PA K
Sbjct: 40 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ-WSPALKI 98
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 99 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 145
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G + L I+ ++ W PA
Sbjct: 43 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ-WSPALTI 101
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 102 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G + L I+ ++ W PA
Sbjct: 44 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ-WSPALTI 102
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 103 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 149
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
D+ PY G F ++++FP +YPFK P++ F TK+YHPNI++ G +CL I+ + W PA
Sbjct: 44 DDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILK-DQWSPALTL 102
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSE 169
+V+ ++ +L+ DP P PL ++A+ +K+F A ++T+ ++
Sbjct: 103 SRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR 150
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G + L I+ ++ W PA
Sbjct: 59 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQ-WSPALTI 117
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 118 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVI 125
Y G F + ++FP +YPFKPPKI F TKIYHPNI+ G + L I+ ++ W PA +V+
Sbjct: 51 YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQ-WSPALTVSKVL 109
Query: 126 QALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ +L+ DP P+ PL D+A + +++K+ ++A ++T+K++
Sbjct: 110 LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 152
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 51 FQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII 110
+Y+ +E + PY G F++E+ P +YP + PK+ F TKIYHPNID G++ L ++
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLDVL 91
Query: 111 SAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170
NW PA + V+ ++ AL+ P P PL D+A++++K + A ++TK +++K
Sbjct: 92 KT-NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 150
Query: 171 RP 172
+P
Sbjct: 151 KP 152
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G + L I+ ++ W PA
Sbjct: 41 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ-WSPALTI 99
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R K+ + + ++T+K++
Sbjct: 100 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
++ PY G F + I+FP +YPFKPPK+ F T+IYHP I+ G + L I+ ++ W PA
Sbjct: 41 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSISLDILRSQ-WSPALTI 99
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+V+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 100 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVI 125
Y G F ++I F EYPFKPPK+ F+T+IYH NI+ +G +CL I+ +NW PA +V+
Sbjct: 92 YEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK-DNWSPALTISKVL 150
Query: 126 QALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ +L+ D P PL +A +++ R + + A +TK+++
Sbjct: 151 LSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 193
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVI 125
Y G F ++I F +YPFKPPK+ F+T+IYH NI+ +G +CL I+ +NW PA +V+
Sbjct: 47 YEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILK-DNWSPALTISKVL 105
Query: 126 QALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ +L+ D P PL +A +++ R + + A +TK+++
Sbjct: 106 LSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 148
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 FQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII 110
+Y+ +E + PY G F++E+ P +YP + PK+ F TKIYHP ID G++ L ++
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDVL 91
Query: 111 SAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170
NW PA + V+ ++ AL+ P P PL D+A++++K + A ++TK +++K
Sbjct: 92 KT-NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 150
Query: 171 RP 172
+P
Sbjct: 151 KP 152
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKTDQ 123
PY G F ++I P EYPFKPPK+ F TK+YHPNI G +CL I+ W P
Sbjct: 45 PYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK-NAWSPVITLKS 103
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ +L AL+ PEP P A++A +L++R+ F K A +T+ ++
Sbjct: 104 ALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 51 FQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII 110
++++ + D PY G +K+E+ P +YP +PPK+ F TKIYHPNID+ G++CL I+
Sbjct: 30 YRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL 89
Query: 111 SAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ W PA + V+ ++ AL++ PEP+ PL + +A+ F +++ A + K ++
Sbjct: 90 K-DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYA 146
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 51 FQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII 110
++++ + D PY G +K+E+ P +YP +PPK+ F TKIYHPNID+ G++CL I+
Sbjct: 30 YRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL 89
Query: 111 SAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ W PA + V+ ++ AL++ PEP+ PL + +A+ F +++ A + K ++
Sbjct: 90 K-DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYA 146
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKTDQ 123
PY G F ++I P EYPFKPPK+ F TK+YHPNI G +CL I+ W P
Sbjct: 46 PYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR-NAWSPVITLKS 104
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170
+ +L AL+ PEP P A++A +L++R+ F K A +T+ ++ +
Sbjct: 105 ALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 49 SYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLP 108
S +Y+ + + P+ G FK+E+ P EYP PK+ F TKIYHPN+D+ G++CL
Sbjct: 32 SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLD 91
Query: 109 IISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
I+ + W PA + V+ ++ AL++ P P+ PL D+A+++ + ++ A +T+ ++
Sbjct: 92 ILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 150
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 49 SYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLP 108
S +Y+ + + P+ G FK+E+ P EYP PK+ F TKIYHPN+D+ G++CL
Sbjct: 33 SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLD 92
Query: 109 IISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
I+ + W PA + V+ ++ AL++ P P+ PL D+A+++ + ++ A +T+ ++
Sbjct: 93 ILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 151
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 49 SYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLP 108
S +Y+ + + P+ G FK+E+ P EYP PK+ F TKIYHPN+D+ G++CL
Sbjct: 35 SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLD 94
Query: 109 IISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
I+ + W PA + V+ ++ AL++ P P+ PL D+A+++ + ++ A +T+ ++
Sbjct: 95 ILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 153
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 49 SYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLP 108
S +Y+ + + P+ G FK+E+ P EYP PK+ F TKIYHPN+D+ G++CL
Sbjct: 30 SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLD 89
Query: 109 IISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
I+ + W PA + V+ ++ AL++ P P+ PL D+A+++ + ++ A +T+ ++
Sbjct: 90 ILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 49 SYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLP 108
S +Y+ + + P+ G FK+E+ P EYP PK+ F TKIYHPN+D+ G++CL
Sbjct: 28 SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLD 87
Query: 109 IISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
I+ + W PA + V+ ++ AL++ P P+ PL D+A+++ + ++ A +T+ ++
Sbjct: 88 ILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 146
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 49 SYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNI-DEKGQVCL 107
++F++ F ++ + PY G F + I P +YP+ PPKI F TKI+HPNI + G +CL
Sbjct: 51 NFFEWVGF-IKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICL 109
Query: 108 PIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTK 165
++ E W PA + ++ AL++DP+P+ P A++A + + F+K A +TK
Sbjct: 110 DVLKNE-WSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTK 166
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQ 123
PY G F ++I P +YP+ PPK+ F TKI+HPNI + G +CL I+ E W PA
Sbjct: 88 PYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHE-WSPALTIRT 146
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTK 165
+ ++ A++ DP P P A++A ++ F++ A+ +T+
Sbjct: 147 ALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTE 188
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIIS------------AE 113
Y G FK + FP +YP +PPK+ F T+I+HPN+D+ G VC+ I+ E
Sbjct: 62 YEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEE 121
Query: 114 NWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKER 153
W P + ++ ++I+++ DP + P D A E+ ++R
Sbjct: 122 RWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 161
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVI 125
YN G+ ++F YP +PPK+ KI+HPNID KG VCL I+ E+W PA +I
Sbjct: 77 YNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILR-EDWSPALDLQSII 135
Query: 126 QALIALVNDPEPEHPLRADLADEFLKERKKF 156
L+ L +P P PL D A + K+F
Sbjct: 136 TGLLFLFLEPNPNDPLNKDAAKLLCEGEKEF 166
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
D+ P++ G FK+ + F +YP KPP + F ++++HPNI G +CL I+ + W P
Sbjct: 44 DDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDV 102
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
++ ++ +L+ DP P P ++ A + + ++++ + D ++
Sbjct: 103 AAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQ 147
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKTDQV 124
Y G +K+ + P +YPF P I F K+ HPN+DE G VCL +I+ + W P V
Sbjct: 43 YEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN-QTWTPLYSLVNV 101
Query: 125 IQALI-ALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170
+ + L+ P P PL +D A +K++ + + ++Y K ++ K
Sbjct: 102 FEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK 148
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVI 125
Y G F YP PPK+ +T +YHPNID +G VCL I+ E+WKP + +I
Sbjct: 48 YKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILR-EDWKPVLTINSII 106
Query: 126 QALIALVNDPEPEHPLRADLADEFLKERKKFMKNAE 161
L L +P PE PL + A+ R+ F +N +
Sbjct: 107 YGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 142
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 48 LSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCL 107
L FQ P D Y G F+ E P Y PPK+ TKI+HPNI E G++CL
Sbjct: 44 LHCFQLTVTP----DEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICL 99
Query: 108 PI-----ISAENWKPATKTDQVIQALIALVND-PEPEHPLRADLADEFLKERKKFMKNAE 161
+ I W P V+ L +L D + PL + A+ L++++ F +
Sbjct: 100 SLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVD 159
Query: 162 DYTKKHSEKRPS 173
DY K+++ PS
Sbjct: 160 DYIKRYARSGPS 171
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G F++ + F EYP KPP + F ++++HPN+ G++CL I+ W P +
Sbjct: 47 PYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ-NRWTPTYDVASI 105
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSE 169
+ ++ +L NDP P P + A F + +++K ++ +K E
Sbjct: 106 LTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVI 125
Y +K+ + FP++YP+KPP + F T +HPN+D+ G +CL I+ ENW + ++
Sbjct: 53 YESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK-ENWTASYDVRTIL 111
Query: 126 QALIALVNDPEPEHPLRADLADEFLK--ERKKFMKNAEDYTKKHSEK 170
+L +L+ +P PL A AD + E KK + E Y S+K
Sbjct: 112 LSLQSLLGEPNNASPLNAQAADMWSNQTEYKKVLH--EKYKTAQSDK 156
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKTDQ 123
PY G +K+ ++ P +YPFK P I F KI+HPNIDE G VCL +I+ + W
Sbjct: 64 PYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN-QTWTALYDLTN 122
Query: 124 VIQALI-ALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ ++ + L+ P P PL D A +L +++ + ++Y +K++
Sbjct: 123 IFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 168
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIIS------------AE 113
Y G FK ++FP +YP KPPK+ F ++I+HPNID++G VC+ I+ E
Sbjct: 48 YEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEE 107
Query: 114 NWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170
W P + ++ ++I+++ DP E P D A + +F K ++ E+
Sbjct: 108 RWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQEE 164
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 47 VLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVC 106
+L++ F P E P+ G FK+ + F EYP KPP + F +K++HPN+ G +C
Sbjct: 36 ILTWEAIIFGPQET----PFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSIC 91
Query: 107 LPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
L I+ W P ++ ++ +L+++P P P + A + + R+++ K + ++
Sbjct: 92 LDILQ-NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 150
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 47 VLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVC 106
+L++ F P E P+ G FK+ + F EYP KPP + F +K++HPN+ G +C
Sbjct: 33 ILTWEAIIFGPQE----TPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSIC 88
Query: 107 LPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
L I+ W P ++ ++ +L+++P P P + A + + R+++ K + ++
Sbjct: 89 LDILQ-NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 147
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
P+ G FK+ I F EYP KPP + F +K++HPN+ G +CL I+ W P +
Sbjct: 47 PFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ-NRWSPTYDVSSI 105
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMK 158
+ ++ +L+++P P P + A + + ++++ K
Sbjct: 106 LTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 48 LSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCL 107
L FQ P D Y G F+ E P Y PPK+ TKI+HPNI E G++CL
Sbjct: 44 LHCFQLTVTP----DEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICL 99
Query: 108 PI-----ISAENWKPATKTDQVIQALIALVND-PEPEHPLRADLADEFLKERKKFMKNAE 161
+ I W P V+ L +L D + PL + A+ L++++ F +
Sbjct: 100 SLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVD 159
Query: 162 DYTKKHS 168
DY K+++
Sbjct: 160 DYIKRYA 166
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIIS-AENWKPATKTDQV 124
+ G +K+ + FP EYP +PPK F ++HPN+ G VCL I++ E WKPA Q+
Sbjct: 59 WEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQI 118
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ + L++DP P + + F K++ ++ K ++++
Sbjct: 119 LLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISA-ENWKPATKTDQV 124
+ G + I + +P EYP KPPK+ F YHPN+ G +CL I++ ++W+PA Q+
Sbjct: 55 WAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQI 114
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKER----KKFMKNAEDYTK 165
+ + L++ P P P + F + + KK + A+ Y+K
Sbjct: 115 VLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 159
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISA-ENWKPATKTDQV 124
+ G + I + +P EYP KPPK+ F YHPN+ G +CL I++ ++W+PA Q+
Sbjct: 53 WAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQI 112
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKER----KKFMKNAEDYTK 165
+ + L++ P P P + F + + KK + A+ Y+K
Sbjct: 113 VLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 56 FPLEFQ--DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEK-GQVCLPIISA 112
F +EF+ + PY G + + + P++YPFK P I F +I HPN+DE+ G VCL +I+
Sbjct: 40 FWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVIN- 98
Query: 113 ENWKPATKTDQVIQALI-ALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ W P + + + + L+ P P PL A +R F ++ H+
Sbjct: 99 QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHA 155
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
D Y G F YP PPK+ +T +YHPNID +G V L I+ E+WKP
Sbjct: 64 DEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILR-EDWKPVLTI 122
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAE 161
+ +I L L +P PE PL + A+ R+ F +N +
Sbjct: 123 NSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 162
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HPN+ G VCL I+ + +W+PA Q
Sbjct: 55 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQ 114
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
++ + L+N+P + P +A+ + + R ++ K KK
Sbjct: 115 ILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 157
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 69 GAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII------------SAENWK 116
G F ++FP +YP PPK+ F +++HPNI G+VC+ I+ SAE W
Sbjct: 55 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 114
Query: 117 PATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
P ++++ ++++++ +P E D + + +R++F K A+ +K
Sbjct: 115 PVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 164
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HPN+ G VCL I+ + +W+PA Q
Sbjct: 55 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 114
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
++ + L+N+P + P +A+ + + R ++ K KK
Sbjct: 115 ILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKK 157
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 69 GAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII------------SAENWK 116
G F ++FP +YP PPK+ F +++HPNI G+VC+ I+ SAE W
Sbjct: 51 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 110
Query: 117 PATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
P ++++ ++++++ +P E D + + +R++F K A+ +K
Sbjct: 111 PVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 69 GAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII------------SAENWK 116
G F ++FP +YP PPK+ F +++HPNI G+VC+ I+ SAE W
Sbjct: 57 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 116
Query: 117 PATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
P ++++ ++++++ +P E D + + +R++F K A+ +K
Sbjct: 117 PVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 166
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 69 GAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII------------SAENWK 116
G F ++FP +YP PPK+ F +++HPNI G+VC+ I+ SAE W
Sbjct: 54 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 113
Query: 117 PATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
P ++++ ++++++ +P E D + + +R++F K A+ +K
Sbjct: 114 PVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 163
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HPN+ G VCL I+ + +W+PA Q
Sbjct: 53 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 112
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ + L+N+P + P +A+ + + R ++ K KK +
Sbjct: 113 ILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HPN+ G VCL I+ + +W+PA Q
Sbjct: 55 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 114
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
++ + L+N+P + P +A+ + + R ++ K KK
Sbjct: 115 ILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 157
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HPN+ G VCL I+ + +W+PA Q
Sbjct: 54 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 113
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ + L+N+P + P +A+ + + R ++ K KK +
Sbjct: 114 ILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HPN+ G VCL I+ + +W+PA Q
Sbjct: 55 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 114
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
++ + L+N+P + P +A+ + + R ++ K KK
Sbjct: 115 ILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKK 157
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HPN+ G VCL I+ + +W+PA Q
Sbjct: 54 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 113
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ + L+N+P + P +A+ + + R ++ K KK +
Sbjct: 114 ILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HPN+ G VCL I+ + +W+PA Q
Sbjct: 52 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 111
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ + L+N+P + P +A+ + + R ++ K KK +
Sbjct: 112 ILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HPN+ G VCL I+ + +W+PA Q
Sbjct: 57 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 116
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ + L+N+P + P +A+ + + R ++ K KK +
Sbjct: 117 ILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIIS------------AE 113
Y G FK + FP +YP+ PP F TK++HPNI E G VC+ I+ +E
Sbjct: 52 YEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSE 111
Query: 114 NWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAE 161
W P ++ ++I+L+N+P P D + + K ++ K+ E
Sbjct: 112 RWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDRE 159
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIIS------------AE 113
Y G FK + FP +YP+ PP F TK++HPNI E G VC+ I+ +E
Sbjct: 49 YEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSE 108
Query: 114 NWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAE 161
W P ++ ++I+L+N+P P D + + K ++ K+ E
Sbjct: 109 RWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDRE 156
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HP + G VCL I+ + +W+PA Q
Sbjct: 55 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQ 114
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
++ + L+N+P + P +A+ + + R ++ K KK
Sbjct: 115 ILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 157
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 63 NPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKT 121
+ PY G +++EI P YPF PPK+ F TKI+HPNI G +CL I+ + W A
Sbjct: 65 DTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-DQWAAAMTL 123
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNA 160
V+ +L AL+ EP+ P A +A+++ + + F + A
Sbjct: 124 RTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTA 162
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 63 NPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKT 121
+ PY G +++EI P YPF PPK+ F TKI+HPNI G +CL I+ + W A
Sbjct: 50 DTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-DQWAAAMTL 108
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNA 160
V+ +L AL+ EP+ P A +A+++ + + F + A
Sbjct: 109 RTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTA 147
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 63 NPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKT 121
+ PY G +++EI P YPF PPK+ F TKI+HPNI G +CL I+ + W A
Sbjct: 101 DTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-DQWAAAMTL 159
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNA 160
V+ +L AL+ EP+ P A +A+++ + + F + A
Sbjct: 160 RTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTA 198
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 63 NPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKT 121
+ PY G +++EI P YPF PPK+ F TKI+HPNI G +CL I+ + W A
Sbjct: 49 DTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-DQWAAAMTL 107
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNA 160
V+ +L AL+ EP+ P A +A+++ + + F + A
Sbjct: 108 RTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTA 146
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKTDQ 123
PY G +++EI P YPF PPK+ F TKI+HPNI G +CL I+ + W A
Sbjct: 54 PYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-DQWAAAMTLRT 112
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNA 160
V+ +L AL+ EP+ P A +A+++ + + F + A
Sbjct: 113 VLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTA 149
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HPN+ G V L I+ + +W+PA Q
Sbjct: 52 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQ 111
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ + L+N+P + P +A+ + + R ++ K KK +
Sbjct: 112 ILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HPN+ G V L I+ + +W+PA Q
Sbjct: 52 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQ 111
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
++ + L+N+P + P +A+ + + R ++ K KK +
Sbjct: 112 ILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPI------------ISA 112
PY G F ++ FP +YP PPK+ F I HPNI G+VC+ I ++
Sbjct: 48 PYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAE 107
Query: 113 ENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAE 161
E W P ++++ ++++++++P E D + R +F + +
Sbjct: 108 ERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 58 LEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKP 117
+E + PY G F++++ ++P PPK F TKI+HPN+ G++C+ ++ +W
Sbjct: 49 IEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK-RDWTA 107
Query: 118 ATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
V+ + L+ P PE L + L+ +++ A T+ H
Sbjct: 108 ELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINF-KTKIYHPNI-DEKGQVCLPIISAENWKPATKTD 122
PY F+I I P+ YP PPKI+F + I H N+ G++CL I+ E W P
Sbjct: 61 PYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLL 120
Query: 123 QVIQALIALVNDPEPEHPLRADLAD 147
+ A+ L+ +P + PL D+ +
Sbjct: 121 HCVHAVWRLLREPVSDSPLDVDIGN 145
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINF-KTKIYHPNI-DEKGQVCLPIISAENWKPATKTD 122
PY F+I I P+ YP PPKI+F + I H N+ G++CL I+ E W P
Sbjct: 61 PYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLL 120
Query: 123 QVIQALIALVNDPEPEHPLRADLAD 147
+ A+ L+ +P + PL D+ +
Sbjct: 121 HCVHAVWRLLREPVCDSPLDVDIGN 145
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 71 FKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALIA 130
+K+ + FP+ YP+ P + F T YHPN+D +G + L I+ E W ++ ++ +
Sbjct: 79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILK-EKWSALYDVRTILLSIQS 137
Query: 131 LVNDPEPEHPLRADLADEFLKERKKFMKN-AEDYTKKHSEKRP 172
L+ +P + PL A E K F K E Y+K+ + + P
Sbjct: 138 LLGEPNIDSPLNTHAA-ELWKNPTAFKKYLQETYSKQVTSQEP 179
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINF-KTKIYHPNI-DEKGQVCLPIISAENWKPATKTD 122
PY F+I I P+ YP PPKI+F + I H N+ G++CL I+ E W P
Sbjct: 61 PYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLL 120
Query: 123 QVIQALIALVNDPEPEHPLRADLA 146
+ A+ L+ +P + PL D+
Sbjct: 121 HCVHAVWRLLREPVCDSPLDVDIG 144
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 63 NPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYH-----PNIDEKGQVCLPIISA----- 112
+ PY G F+ ++ FP +YP PP +N +T H PN+ G+VCL I++
Sbjct: 121 DTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRP 180
Query: 113 -ENWKPATKT-DQVIQALIALVNDPEP 137
E W P T + QV+ ++ +L+ EP
Sbjct: 181 EEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 58 LEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNID-EKGQVCLPII-SAENW 115
+E N + F++ I+F +EY + PP + F T +HPN+D GQ C+ + + E W
Sbjct: 59 IEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKW 118
Query: 116 KPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKF 156
++ AL ++++P E+P+ + A +K+ +
Sbjct: 119 NTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLY 159
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 66 YNKGAFKIEINFPAEYPFKPPKINFKTKI--YHPNIDEKGQVCLPIISAENWKPATKTDQ 123
Y F++ F + YPF P++ F + HP++ G +CL I++ E+W PA
Sbjct: 68 YEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT-EDWSPALSVQS 126
Query: 124 VIQALIALVN 133
V ++I++++
Sbjct: 127 VCLSIISMLS 136
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 26 VAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKP 85
+ +P C D + + W++ Y +N Y +KI+I FP YP KP
Sbjct: 33 LKNPPINCTID-VHPSNIRIWIVQYVGL--------ENTIYANEVYKIKIIFPDNYPLKP 83
Query: 86 PKINFKTK-IYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALIALVND 134
P + F K H ++ G +CL ++ +++ P+ +I ++I++++
Sbjct: 84 PIVYFLQKPPKHTHVYSNGDICLSVL-GDDYNPSLSISGLILSIISMLSS 132
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 28 HPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPK 87
+P C D + + W++ Y +N Y +K++I FP +YP KPP
Sbjct: 21 NPPINCTLD-VHPNNIRIWIVKYVGL--------ENTIYANEVYKLKIIFPDDYPLKPPI 71
Query: 88 INFKTK-IYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALIALV 132
+ F K H ++ G +CL ++ +++ P+ ++ ++I+++
Sbjct: 72 VYFLQKPPKHTHVYSNGDICLSLL-GDDYNPSLSISGLVLSIISML 116
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 70 AFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALI 129
+++ + F +YP +PP + F T +Y P + +G +C +++ + W P VI+ ++
Sbjct: 70 TYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVN-DFWTPDQHASDVIKLVL 128
Query: 130 ALV 132
V
Sbjct: 129 DRV 131
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEK--GQVCLPIIS--AENWKPATK 120
PY G + ++ FP E+PFKPP I T PN K ++CL I + W PA
Sbjct: 57 PYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWS 112
Query: 121 TDQVIQALIALVNDPEP 137
++ L++ + + P
Sbjct: 113 VSTILTGLLSFMVEKGP 129
>pdb|3R3Q|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain
pdb|3R42|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain In Complex
With A Vps27 Psdp Peptide
Length = 162
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 14/70 (20%)
Query: 78 PAEYPFKPPKINFKTKIYHPN-----------IDEKGQVCLPIISAENWKPAT-KTDQVI 125
P+ YP KPP I+ + + N ID G + LPI+ A W PA V+
Sbjct: 90 PSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHA--WDPAAMNLIMVV 147
Query: 126 QALIALVNDP 135
Q L++L+++P
Sbjct: 148 QELMSLLHEP 157
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 83 FKPPKINFK-TKIYHPNIDEKGQVCLPIISAEN-WKPATKTDQVIQALIALVNDPEPEHP 140
PK+NF K+ ID+ QV LP+ + + W P D + A ++L PEH
Sbjct: 234 IGSPKMNFLPVKVTATAIDQV-QVELPMPNRQQVWLPVESRDVQVGANMSL--GIRPEHL 290
Query: 141 LRADLADEFLKERKKFMKNAEDYTKKH 167
L +D+AD L+ + ++ + T+ H
Sbjct: 291 LPSDIADVILEGEVQVVEQLGNETQIH 317
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 83 FKPPKINFK-TKIYHPNIDEKGQVCLPIISAEN-WKPATKTDQVIQALIALVNDPEPEHP 140
PK+NF K+ ID+ QV LP+ + + W P D + A ++L PEH
Sbjct: 234 IGSPKMNFLPVKVTATAIDQV-QVELPMPNRQQVWLPVESRDVQVGANMSL--GIRPEHL 290
Query: 141 LRADLADEFLKERKKFMKNAEDYTKKH 167
L +D+AD L+ + ++ + T+ H
Sbjct: 291 LPSDIADVILEGEVQVVEQLGNETQIH 317
>pdb|1UZX|A Chain A, A Complex Of The Vps23 Uev With Ubiquitin
Length = 169
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 14/70 (20%)
Query: 78 PAEYPFKPPKINFKTKIYHPN-----------IDEKGQVCLPIISAENWKPAT-KTDQVI 125
P+ YP KPP I+ + + N ID G + LPI+ W PA V+
Sbjct: 96 PSXYPVKPPFISINLENFDXNTISSSLPIQEYIDSNGWIALPILHC--WDPAAXNLIXVV 153
Query: 126 QALIALVNDP 135
Q L +L+++P
Sbjct: 154 QELXSLLHEP 163
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 83 FKPPKINFK-TKIYHPNIDEKGQVCLPIISAEN-WKPATKTDQVIQALIALVNDPEPEHP 140
PK+NF K+ ID+ QV LP+ + + W P D + A ++L PEH
Sbjct: 234 IGSPKMNFLPVKVTATAIDQV-QVELPMPNRQQVWLPVESRDVQVGANMSL--GIRPEHL 290
Query: 141 LRADLADEFLKERKKFMKNAEDYTKKH 167
L +D+AD L+ + ++ + T+ H
Sbjct: 291 LPSDIADVILEGEVQVVEQLGNETQIH 317
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 83 FKPPKINFK-TKIYHPNIDEKGQVCLPIISAEN-WKPATKTDQVIQALIALVNDPEPEHP 140
PK+NF K+ ID+ QV LP+ + + W P D + A ++L PEH
Sbjct: 253 IGSPKMNFLPVKVTATAIDQV-QVELPMPNRQQVWLPVESRDVQVGANMSL--GIRPEHL 309
Query: 141 LRADLADEFLKERKKFMKNAEDYTKKH 167
L +D+AD L+ + ++ + T+ H
Sbjct: 310 LPSDIADVILEGEVQVVEQLGNETQIH 336
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 73 IEINFPAEYPFKPPKINFKTKIYHPN-IDEKGQVCLPIISAENWKPATKTDQVIQALIA 130
+ +F +PF PP + + + + G +C+ +++ + W A + VI + A
Sbjct: 72 LNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISA 130
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 71 FKIEINFPAEYPFKPPKINFKTKIYHPNID-EKGQVCLPIISAENWKPATKTDQVIQAL 128
+ + I+ YP PPK+ F +KI P ++ G+V + +WK A + ++ L
Sbjct: 59 YSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDL 117
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 71 FKIEINFPAEYPFKPPKINFKTKIYHPNID-EKGQVCLPIISAENWKPATKTDQVIQAL 128
+ + I+ YP PPK+ F +KI P ++ G+V + +WK A + ++ L
Sbjct: 58 YSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDL 116
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 73 IEINFPAEYPFKPPKINFKTKIYHPN-IDEKGQVCLPIISAENWKPATKTDQVIQALIA 130
+ +F +PF PP + + + G +C+ +++ + W A + VI + A
Sbjct: 93 LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINA 151
>pdb|2C71|A Chain A, The Structure Of A Family 4 Acetyl Xylan Esterase From
Clostridium Thermocellum In Complex With A Magnesium
Ion.
pdb|2C79|A Chain A, The Structure Of A Family 4 Acetyl Xylan Esterase From
Clostridium Thermocellum In Complex With A Colbalt Ion
Length = 216
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 83 FKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALIALVND-------- 134
F+PP + +++ N+D V + ++A +W P+T +Q A+I V D
Sbjct: 101 FRPPNLETSPTLFN-NVD---LVFVGGLTANDWIPSTTAEQRAAAVINGVRDGTIILLHD 156
Query: 135 --PEPE-HPLRADLADEFLKERK-KFMKNAEDYTKKHSEKRPS 173
PEP P D+ LK R +F+ E +T K PS
Sbjct: 157 VQPEPHPTPEALDIIIPTLKSRGYEFVTLTELFTLKGVPIDPS 199
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 81 YPFKPPKINFKTKIYHPNIDEKGQV 105
YP PP + F TKI +D G+V
Sbjct: 88 YPDSPPTVKFDTKIEMSCVDNCGRV 112
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 81 YPFKPPKINFKTKIYHPNIDEKGQV 105
YP PP + F TKI +D G+V
Sbjct: 84 YPDSPPTVKFDTKIEMSCVDNCGRV 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,775,273
Number of Sequences: 62578
Number of extensions: 240863
Number of successful extensions: 786
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 133
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)