Query psy12515
Match_columns 174
No_of_seqs 190 out of 1437
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:16:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417|consensus 100.0 3.1E-52 6.7E-57 311.1 13.4 147 22-170 2-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 2.7E-51 5.9E-56 311.6 15.2 147 22-169 6-152 (153)
3 KOG0419|consensus 100.0 1.4E-48 3.1E-53 284.7 12.7 147 20-168 3-149 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 6.9E-48 1.5E-52 294.6 16.3 147 22-170 3-149 (152)
5 PLN00172 ubiquitin conjugating 100.0 3.6E-47 7.8E-52 289.2 16.1 145 23-169 3-147 (147)
6 KOG0425|consensus 100.0 7.6E-44 1.7E-48 266.8 14.2 147 22-168 6-164 (171)
7 KOG0424|consensus 100.0 2.7E-43 5.8E-48 260.4 14.0 149 22-170 5-158 (158)
8 KOG0426|consensus 100.0 1.6E-43 3.6E-48 258.4 12.5 147 21-167 4-162 (165)
9 PF00179 UQ_con: Ubiquitin-con 100.0 1.3E-42 2.7E-47 261.6 12.7 140 25-164 1-140 (140)
10 KOG0418|consensus 100.0 3.9E-42 8.4E-47 264.5 13.0 151 21-173 3-157 (200)
11 smart00212 UBCc Ubiquitin-conj 100.0 4.3E-41 9.4E-46 254.7 15.9 145 24-168 1-145 (145)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 5.5E-41 1.2E-45 253.1 14.5 140 24-164 2-141 (141)
13 KOG0421|consensus 100.0 4.9E-40 1.1E-44 243.2 10.3 143 22-167 30-172 (175)
14 KOG0422|consensus 100.0 1.4E-38 2.9E-43 234.3 13.5 151 22-173 3-153 (153)
15 KOG0416|consensus 100.0 3.3E-36 7.2E-41 228.4 10.0 148 19-171 1-150 (189)
16 KOG0423|consensus 100.0 2.6E-34 5.7E-39 218.7 7.7 156 15-172 3-159 (223)
17 KOG0420|consensus 100.0 1.7E-33 3.7E-38 214.0 11.2 151 17-170 24-176 (184)
18 KOG0427|consensus 100.0 8.5E-31 1.8E-35 191.4 8.3 119 14-135 7-127 (161)
19 KOG0894|consensus 100.0 4E-29 8.7E-34 196.2 13.0 113 21-136 5-119 (244)
20 KOG0428|consensus 99.9 5.8E-24 1.2E-28 170.2 8.0 112 19-134 9-122 (314)
21 KOG0429|consensus 99.9 6.8E-23 1.5E-27 161.7 11.7 141 23-166 21-167 (258)
22 KOG0895|consensus 99.8 7.6E-19 1.6E-23 163.1 5.5 114 26-140 856-979 (1101)
23 KOG0895|consensus 99.6 2.9E-15 6.3E-20 139.6 9.2 113 22-135 283-405 (1101)
24 KOG0896|consensus 99.4 8.8E-13 1.9E-17 97.2 7.0 110 24-133 8-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.5 2.5E-07 5.4E-12 69.1 6.6 68 67-135 34-107 (133)
26 KOG0897|consensus 98.4 6.1E-07 1.3E-11 64.7 5.8 86 71-161 13-107 (122)
27 PF05743 UEV: UEV domain; Int 98.3 7.2E-07 1.6E-11 65.8 4.5 74 58-133 35-116 (121)
28 KOG2391|consensus 97.6 0.00022 4.8E-09 60.5 6.6 77 58-136 55-139 (365)
29 PF08694 UFC1: Ubiquitin-fold 96.7 0.00072 1.6E-08 50.9 1.5 111 7-125 11-135 (161)
30 PF14457 Prok-E2_A: Prokaryoti 95.4 0.098 2.1E-06 40.4 7.7 63 72-134 56-126 (162)
31 PF14462 Prok-E2_E: Prokaryoti 95.1 0.19 4.2E-06 37.0 8.0 90 40-133 13-120 (122)
32 smart00591 RWD domain in RING 93.7 0.99 2.1E-05 31.2 8.9 25 68-92 40-64 (107)
33 PF05773 RWD: RWD domain; Int 92.0 0.13 2.7E-06 36.1 2.4 32 62-93 42-73 (113)
34 KOG3357|consensus 89.8 0.8 1.7E-05 34.2 4.8 88 22-116 28-126 (167)
35 PF06113 BRE: Brain and reprod 71.0 10 0.00023 32.6 5.3 58 65-129 61-121 (333)
36 PF09765 WD-3: WD-repeat regio 63.2 7.9 0.00017 32.7 3.1 88 20-132 98-186 (291)
37 PF14460 Prok-E2_D: Prokaryoti 52.0 23 0.0005 27.4 3.9 35 97-135 98-133 (175)
38 KOG4018|consensus 50.2 15 0.00032 29.7 2.5 20 70-89 50-69 (215)
39 PF03847 TFIID_20kDa: Transcri 49.7 43 0.00093 21.9 4.3 46 127-172 4-49 (68)
40 cd00421 intradiol_dioxygenase 48.0 25 0.00054 26.3 3.4 26 67-92 64-90 (146)
41 KOG0309|consensus 45.1 61 0.0013 31.3 6.0 36 57-93 454-491 (1081)
42 cd03457 intradiol_dioxygenase_ 43.7 31 0.00066 27.2 3.4 26 67-92 85-110 (188)
43 PF09929 DUF2161: Uncharacteri 37.5 18 0.00039 26.5 1.1 37 6-42 12-48 (118)
44 cd07981 TAF12 TATA Binding Pro 37.2 1.1E+02 0.0023 20.0 4.8 43 127-169 6-48 (72)
45 cd03459 3,4-PCD Protocatechuat 35.9 49 0.0011 25.3 3.4 25 68-92 72-101 (158)
46 PF15586 Imm47: Immunity prote 31.9 69 0.0015 23.3 3.4 36 43-79 18-53 (116)
47 PF06113 BRE: Brain and reprod 29.1 63 0.0014 27.9 3.2 22 71-92 308-329 (333)
48 cd05845 Ig2_L1-CAM_like Second 27.2 1.4E+02 0.0031 20.6 4.3 26 66-93 16-41 (95)
49 KOG0177|consensus 27.1 83 0.0018 25.1 3.3 30 102-132 135-164 (200)
50 TIGR02423 protocat_alph protoc 26.1 85 0.0018 24.8 3.3 26 67-92 95-125 (193)
51 cd03463 3,4-PCD_alpha Protocat 24.0 1E+02 0.0022 24.2 3.4 24 68-91 92-120 (185)
52 PF12652 CotJB: CotJB protein; 23.8 1.8E+02 0.0039 19.6 4.1 30 139-168 25-54 (78)
53 smart00340 HALZ homeobox assoc 21.4 41 0.00088 20.2 0.5 15 21-35 19-33 (44)
No 1
>KOG0417|consensus
Probab=100.00 E-value=3.1e-52 Score=311.09 Aligned_cols=147 Identities=33% Similarity=0.684 Sum_probs=141.6
Q ss_pred chhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcccC
Q psy12515 22 SRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE 101 (174)
Q Consensus 22 ~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 101 (174)
+.+||.+|++.+..|+++|+.+.+.++|+++ |.++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~-w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFH-WQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceee-EEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 4569999999999999999999988887777 589999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhcCC
Q psy12515 102 KGQVCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170 (174)
Q Consensus 102 ~G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a~~ 170 (174)
.|.||+++| .+.|+|+++|..||++|+++|.+||+++|++.++|++|+.|+.+|.++||+||+|||+.
T Consensus 81 ~G~IclDIL-k~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDIL-KDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhh-hccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 999999999 68899999999999999999999999999999999999999999999999999999974
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-51 Score=311.57 Aligned_cols=147 Identities=29% Similarity=0.614 Sum_probs=142.8
Q ss_pred chhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcccC
Q psy12515 22 SRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE 101 (174)
Q Consensus 22 ~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 101 (174)
+.+||++|++.+++++..++.+.|.+++++..|.++|.||.+||||||+|++.|.||++||++||+|+|.++||||||+.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 78999999999999999999999999866666799999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhcC
Q psy12515 102 KGQVCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSE 169 (174)
Q Consensus 102 ~G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a~ 169 (174)
+|+||+++| .+.|+|+++|++||++|+++|.+||.++|+|.|||++|++|+++|.++||+|+++|+.
T Consensus 86 ~G~vCLdIL-~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 86 SGNVCLDIL-KDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCChhHHH-hCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 999999999 5999999999999999999999999999999999999999999999999999999985
No 3
>KOG0419|consensus
Probab=100.00 E-value=1.4e-48 Score=284.67 Aligned_cols=147 Identities=23% Similarity=0.557 Sum_probs=141.3
Q ss_pred CcchhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcc
Q psy12515 20 SNSRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNI 99 (174)
Q Consensus 20 s~~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 99 (174)
..++|||++|++.+++|++.||.+.|.++|+|.| .++|.||.+|||+||+|++.|.|+++||.+||.|+|++.+|||||
T Consensus 3 tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W-~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNv 81 (152)
T KOG0419|consen 3 TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEW-NAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNV 81 (152)
T ss_pred chHHHHHHHHHHHhhcCCCCCccCCCCccceeee-eeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCc
Confidence 3489999999999999999999999999988886 899999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhc
Q psy12515 100 DEKGQVCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168 (174)
Q Consensus 100 ~~~G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a 168 (174)
|.+|.||+++| ...|+|.+++..||.+||+||.+||+++|+|.|||++|++|+++|.+++++.+.+-.
T Consensus 82 ya~G~iClDiL-qNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw 149 (152)
T KOG0419|consen 82 YADGSICLDIL-QNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSW 149 (152)
T ss_pred CCCCcchHHHH-hcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 99999999999 679999999999999999999999999999999999999999999999999887654
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=6.9e-48 Score=294.62 Aligned_cols=147 Identities=33% Similarity=0.659 Sum_probs=140.6
Q ss_pred chhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcccC
Q psy12515 22 SRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE 101 (174)
Q Consensus 22 ~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 101 (174)
+.|||++|++++.+++..|+.+.+.++|+ ..|.++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~-~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNY-RHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCc-cEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 57999999999999999999999987655 45689999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhcCC
Q psy12515 102 KGQVCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170 (174)
Q Consensus 102 ~G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a~~ 170 (174)
+|.||+++| .+.|+|++||++||++|++||.+|++++|+|.+||++|++|++.|.++|++|+++||..
T Consensus 82 ~G~iCl~iL-~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 82 LGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CCeEECccC-cccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 999999999 68999999999999999999999999999999999999999999999999999999974
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3.6e-47 Score=289.25 Aligned_cols=145 Identities=32% Similarity=0.690 Sum_probs=138.7
Q ss_pred hhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcccCC
Q psy12515 23 RRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEK 102 (174)
Q Consensus 23 ~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~ 102 (174)
.+||++|++++++++.+++.+.+.++|+++ |++.|.||++|||+||+|++.|.||++||++||+|+|.|+++||||+.+
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~-w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFR-WTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChhe-EEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 589999999999999999999988766555 5899999999999999999999999999999999999999999999999
Q ss_pred CcEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhcC
Q psy12515 103 GQVCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSE 169 (174)
Q Consensus 103 G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a~ 169 (174)
|.||+++| .+.|+|++||++||.+|++||.+|++++|+|.+||++|++|+++|.++|++|+++||.
T Consensus 82 G~iCl~il-~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 82 GSICLDIL-RDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CEEEcccC-cCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 99999999 6899999999999999999999999999999999999999999999999999999983
No 6
>KOG0425|consensus
Probab=100.00 E-value=7.6e-44 Score=266.77 Aligned_cols=147 Identities=22% Similarity=0.487 Sum_probs=138.5
Q ss_pred chhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcccC
Q psy12515 22 SRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE 101 (174)
Q Consensus 22 ~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 101 (174)
+..-|+++|++|+..++.|+.+.-.+++++..|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.+.+|||||++
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 56778999999999999999998777766666799999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCC------------CCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhc
Q psy12515 102 KGQVCLPIIS------------AENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168 (174)
Q Consensus 102 ~G~icl~~l~------------~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a 168 (174)
+|++|+|||| .+.|+|..|+++||++|.+||.+||.++|+|.+||+.|++|+++|.+++++++.+--
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~ 164 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQ 164 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 9999999997 357999999999999999999999999999999999999999999999999998754
No 7
>KOG0424|consensus
Probab=100.00 E-value=2.7e-43 Score=260.44 Aligned_cols=149 Identities=25% Similarity=0.531 Sum_probs=140.1
Q ss_pred chhhhhcchhHhhhCCCCceeeecCcc----ccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccC
Q psy12515 22 SRRKVAHPHFQCVTDLIFSLKFKPWVL----SYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHP 97 (174)
Q Consensus 22 ~~~RL~~e~~~l~~~~~~~i~~~p~~~----~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 97 (174)
+..||+.|-+.+.+|-+.|++++|... .++..|.|+|.|++||+||||.|.+++.||++||.+||++.|.+++|||
T Consensus 5 ~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HP 84 (158)
T KOG0424|consen 5 ALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHP 84 (158)
T ss_pred HHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCC
Confidence 578999999999999999999987653 3566779999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEecCCCCC-CCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhcCC
Q psy12515 98 NIDEKGQVCLPIISAE-NWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170 (174)
Q Consensus 98 nv~~~G~icl~~l~~~-~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a~~ 170 (174)
|||++|.|||++|+.+ +|+|+.||.+||++||.||.+||+.+|+|.||..+|.+|+..|.++||+++++||.+
T Consensus 85 NVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 85 NVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 9999999999999644 499999999999999999999999999999999999999999999999999999853
No 8
>KOG0426|consensus
Probab=100.00 E-value=1.6e-43 Score=258.42 Aligned_cols=147 Identities=22% Similarity=0.504 Sum_probs=142.8
Q ss_pred cchhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCccc
Q psy12515 21 NSRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNID 100 (174)
Q Consensus 21 ~~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 100 (174)
.+.|||++||+|+..++++||.+.|..+|+|..|.|+|.||++|+|+||+|..++.||.|||.+||+++|...+|||||+
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEecCCC------------CCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHh
Q psy12515 101 EKGQVCLPIIS------------AENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167 (174)
Q Consensus 101 ~~G~icl~~l~------------~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~ 167 (174)
.+|+||+++|| .+.|+|.++++.||+++.+||.+||.++.+|.+|+.++++||++|.+.|+..+.|.
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKt 162 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKT 162 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999999997 46899999999999999999999999999999999999999999999999999875
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.3e-42 Score=261.61 Aligned_cols=140 Identities=30% Similarity=0.670 Sum_probs=128.3
Q ss_pred hhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcccCCCc
Q psy12515 25 KVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQ 104 (174)
Q Consensus 25 RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~ 104 (174)
||++|+++++.++..|+.+.+.+++++..|++.|.||++|||+||+|+|.|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999888646666799999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHH
Q psy12515 105 VCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYT 164 (174)
Q Consensus 105 icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~ 164 (174)
||+++|+.+.|+|++++.+||.+|+++|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999656799999999999999999999999999999999999999999999999984
No 10
>KOG0418|consensus
Probab=100.00 E-value=3.9e-42 Score=264.52 Aligned_cols=151 Identities=28% Similarity=0.557 Sum_probs=140.9
Q ss_pred cchhhhhcchhHhhhCC---CCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccC
Q psy12515 21 NSRRKVAHPHFQCVTDL---IFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHP 97 (174)
Q Consensus 21 ~~~~RL~~e~~~l~~~~---~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 97 (174)
.+-+||++|.+++..++ -.||.+....+|.-+ ....|.||+|||||||+|.++|.+|++|||+||+|+|.|+||||
T Consensus 3 ~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~-ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHP 81 (200)
T KOG0418|consen 3 NAFKRINREQKEVLDDPEISQAGIIVEMVNENLKE-IKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHP 81 (200)
T ss_pred cHHHHHHHHHHHhccChhhhhcceEEEEccCChhh-ceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecC
Confidence 37799999999999999 678888877654444 47899999999999999999999999999999999999999999
Q ss_pred cccC-CCcEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCCC
Q psy12515 98 NIDE-KGQVCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPS 173 (174)
Q Consensus 98 nv~~-~G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a~~~~~ 173 (174)
||.+ +|.||+++| .+.|.+++|++.+|++||++|..|++.+|.+..+|++|.+|++.|.+.||.||..||++++.
T Consensus 82 nVSs~tGaICLDil-kd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~~~ 157 (200)
T KOG0418|consen 82 NVSSQTGAICLDIL-KDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGRLP 157 (200)
T ss_pred CCCcccccchhhhh-hcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCC
Confidence 9997 999999999 79999999999999999999999999999999999999999999999999999999998543
No 11
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=4.3e-41 Score=254.74 Aligned_cols=145 Identities=36% Similarity=0.686 Sum_probs=137.8
Q ss_pred hhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcccCCC
Q psy12515 24 RKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKG 103 (174)
Q Consensus 24 ~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 103 (174)
+||++|++++..++.+|+.+.+..++++..|+++|.||++|||+||+|+|.|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 69999999999999999999988764565668999999999999999999999999999999999999999999999999
Q ss_pred cEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhc
Q psy12515 104 QVCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168 (174)
Q Consensus 104 ~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a 168 (174)
.||+++|..++|+|++++.+||.+|+++|.+|+.++++|.+|+.+|++|++.|.++|+++++|++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999995479999999999999999999999999999999999999999999999999999985
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5.5e-41 Score=253.09 Aligned_cols=140 Identities=35% Similarity=0.726 Sum_probs=133.2
Q ss_pred hhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcccCCC
Q psy12515 24 RKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKG 103 (174)
Q Consensus 24 ~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 103 (174)
|||++|++++++++..|+.+.+.++|+++ |.+.|.||++|||+||+|++.|.||++||++||+|+|.++++||||+.+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~-w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLE-WHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhE-EEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 79999999999999999999998887666 58999999999999999999999999999999999999999999999999
Q ss_pred cEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHH
Q psy12515 104 QVCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYT 164 (174)
Q Consensus 104 ~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~ 164 (174)
.||+++++.+.|+|++++.+||.+|+++|.+|+.++++|.+|+.+|++|++.|.++|++|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999544599999999999999999999999999999999999999999999999975
No 13
>KOG0421|consensus
Probab=100.00 E-value=4.9e-40 Score=243.22 Aligned_cols=143 Identities=22% Similarity=0.497 Sum_probs=136.5
Q ss_pred chhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcccC
Q psy12515 22 SRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE 101 (174)
Q Consensus 22 ~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 101 (174)
..|||++|+..|++...+||.+.|.++|+|.| ..+|.||.+|+|+|-.|++.+.||.+||++||+|.|+|+.|||||+.
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~W-vGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~ 108 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKW-VGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL 108 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEE-eeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc
Confidence 56999999999999999999999999977775 89999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHh
Q psy12515 102 KGQVCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167 (174)
Q Consensus 102 ~G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~ 167 (174)
.|.|||+|| .+.|+..++|+.||++||++|-+||..+|+|..||+++. |.++|.+.+.+.-++.
T Consensus 109 ~GnIcLDIL-kdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 109 SGNICLDIL-KDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cccchHHHH-HHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 999999999 799999999999999999999999999999999999998 9999999988776553
No 14
>KOG0422|consensus
Probab=100.00 E-value=1.4e-38 Score=234.34 Aligned_cols=151 Identities=61% Similarity=0.997 Sum_probs=139.9
Q ss_pred chhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcccC
Q psy12515 22 SRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE 101 (174)
Q Consensus 22 ~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 101 (174)
+.|||.+|+..++.+....+.-...+++++..|.+ .+-|.+-||..|.|++.|.||.+|||+||+|.|.|.||||||++
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~-llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTG-LLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEe-EecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 57999999999999988866655566666665554 56688999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCCC
Q psy12515 102 KGQVCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPS 173 (174)
Q Consensus 102 ~G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a~~~~~ 173 (174)
.|.||+.++..++|.|++...+||++|..++.+|+++.|++.|+|+.|.+|+..|.++|.++|+||+.+||+
T Consensus 82 ~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~rp~ 153 (153)
T KOG0422|consen 82 KGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKRPE 153 (153)
T ss_pred CCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 15
>KOG0416|consensus
Probab=100.00 E-value=3.3e-36 Score=228.37 Aligned_cols=148 Identities=28% Similarity=0.625 Sum_probs=134.2
Q ss_pred CCcchhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCc
Q psy12515 19 ISNSRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPN 98 (174)
Q Consensus 19 ~s~~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 98 (174)
++++.|||-.|...|.+.... + ...++.++.+++.+.||.+|||+||+++++|.+|++||++.|.|.|.++|||||
T Consensus 1 ms~~~rRid~Dv~KL~~s~ye---V-~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPN 76 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMSDYE---V-TIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPN 76 (189)
T ss_pred CCCcccchhhHHHHHHhcCCe---E-EEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCC
Confidence 367889999999888876543 2 234566788899999999999999999999999999999999999999999999
Q ss_pred ccC-CCcEEecCCCCCCCCCCCCHHHHHHH-HHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCC
Q psy12515 99 IDE-KGQVCLPIISAENWKPATKTDQVIQA-LIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKR 171 (174)
Q Consensus 99 v~~-~G~icl~~l~~~~W~p~~ti~~il~~-i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a~~~ 171 (174)
|+. +|.|||+.+ ...|+|.+.+..|+.. |-.||..||+.+|+|.|||.+|.++++.|.++++++++|||++.
T Consensus 77 IDe~SGsVCLDVi-NQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~ 150 (189)
T KOG0416|consen 77 IDEASGSVCLDVI-NQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPE 150 (189)
T ss_pred chhccCccHHHHH-hhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChh
Confidence 997 999999999 5889999999999976 45899999999999999999999999999999999999999765
No 16
>KOG0423|consensus
Probab=100.00 E-value=2.6e-34 Score=218.69 Aligned_cols=156 Identities=23% Similarity=0.481 Sum_probs=146.0
Q ss_pred cCCCCCc-chhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecc
Q psy12515 15 KNTNISN-SRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTK 93 (174)
Q Consensus 15 ~~~~~s~-~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 93 (174)
.|.++.. ..|.+++|+..+..+|+.||.+.+.++|.-+. .+.|.||.||||++|+|+..+.+..|||.+||+-.|+|+
T Consensus 3 snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdi-qa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTK 81 (223)
T KOG0423|consen 3 SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDI-QADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTK 81 (223)
T ss_pred cccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHH-HhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeee
Confidence 3456665 56889999999999999999999888876664 578999999999999999999999999999999999999
Q ss_pred cccCcccCCCcEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCC
Q psy12515 94 IYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRP 172 (174)
Q Consensus 94 i~HPnv~~~G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a~~~~ 172 (174)
||||||-.+|.||+..| ..+|+|.++|+.||+.|..+|..|++++.+|+||+++..++.++|.++||-+|.-||...|
T Consensus 82 IFHPNVaaNGEICVNtL-KkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p~~ 159 (223)
T KOG0423|consen 82 IFHPNVAANGEICVNTL-KKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKPKP 159 (223)
T ss_pred eccCCcccCceehhhhh-hcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999 7899999999999999999999999999999999999999999999999999999998765
No 17
>KOG0420|consensus
Probab=100.00 E-value=1.7e-33 Score=213.97 Aligned_cols=151 Identities=30% Similarity=0.524 Sum_probs=131.6
Q ss_pred CCCCcchhhhhcchhHhhhCCCCceeee--cCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeeccc
Q psy12515 17 TNISNSRRKVAHPHFQCVTDLIFSLKFK--PWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKI 94 (174)
Q Consensus 17 ~~~s~~~~RL~~e~~~l~~~~~~~i~~~--p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 94 (174)
.+.|.+.-||.+|..++.--+...+.+. +.+.++++ .-+++-|..+.|+||.|.|.+.+|+.||+.||+|.++|+|
T Consensus 24 ~~~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~--~elti~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV 101 (184)
T KOG0420|consen 24 KKVSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLE--FELTITPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKV 101 (184)
T ss_pred ccccHHHHHHHhhhhhccCCCccccccccCCcccccce--EEEEEccCcceecCceEEEEEECCCCCCCCCCeeeeeecc
Confidence 4566677888888877755554444443 55666643 3368889999999999999999999999999999999999
Q ss_pred ccCcccCCCcEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhcCC
Q psy12515 95 YHPNIDEKGQVCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170 (174)
Q Consensus 95 ~HPnv~~~G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a~~ 170 (174)
|||||+.+|.|||+|| .++|+|+.+|.+|+.+|+.+|.+|+++||+|.|||..+++|++.|..+||.....++-+
T Consensus 102 ~HPNId~~GnVCLnIL-RedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~ 176 (184)
T KOG0420|consen 102 YHPNIDLDGNVCLNIL-REDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVG 176 (184)
T ss_pred ccCCcCCcchHHHHHH-HhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccC
Confidence 9999999999999999 68899999999999999999999999999999999999999999999999998877643
No 18
>KOG0427|consensus
Probab=99.97 E-value=8.5e-31 Score=191.43 Aligned_cols=119 Identities=18% Similarity=0.486 Sum_probs=109.2
Q ss_pred ccCCCCCc-chhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeec
Q psy12515 14 EKNTNISN-SRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKT 92 (174)
Q Consensus 14 ~~~~~~s~-~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 92 (174)
.....+++ +.+||++|+.+++.+++.|+... ..|+++.|.+.+.|.+||.|+|..|++.+.||+.||+..|+|.|..
T Consensus 7 ~~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~--v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~ 84 (161)
T KOG0427|consen 7 PSRKALSKIATNRLQKELSEWQNNPPTGFKHR--VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVG 84 (161)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCcceee--cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEec
Confidence 33344444 88999999999999999999988 6678888999999999999999999999999999999999999998
Q ss_pred cc-ccCcccCCCcEEecCCCCCCCCCCCCHHHHHHHHHHhhcCC
Q psy12515 93 KI-YHPNIDEKGQVCLPIISAENWKPATKTDQVIQALIALVNDP 135 (174)
Q Consensus 93 ~i-~HPnv~~~G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p 135 (174)
++ .||+||++|.|||++| .+.|+|++++.+|+++|.+||++-
T Consensus 85 ~~P~HPHiYSNGHICL~iL-~d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 85 PAPLHPHIYSNGHICLDIL-YDSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred CCCCCCceecCCeEEEEee-cccCCcchhhHHHHHHHHHHHccC
Confidence 85 8999999999999999 799999999999999999999854
No 19
>KOG0894|consensus
Probab=99.96 E-value=4e-29 Score=196.24 Aligned_cols=113 Identities=20% Similarity=0.472 Sum_probs=102.3
Q ss_pred cchhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCccc
Q psy12515 21 NSRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNID 100 (174)
Q Consensus 21 ~~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 100 (174)
.+.|||++||+.|++||+++|.++|+.+|+++| |++|.||+||||+||.|+.+|.||.+||++||.|++.|+-. .+-
T Consensus 5 ~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEW-HYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNG--RFk 81 (244)
T KOG0894|consen 5 AAVKRLQKEYRALCKDPVPYIVARPNPNNILEW-HYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNG--RFK 81 (244)
T ss_pred HHHHHHHHHHHHHHhCCchhhccCCCccceeee-EEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCC--cee
Confidence 477999999999999999999999999999997 67799999999999999999999999999999999999421 133
Q ss_pred CCCcEEecCC--CCCCCCCCCCHHHHHHHHHHhhcCCC
Q psy12515 101 EKGQVCLPII--SAENWKPATKTDQVIQALIALVNDPE 136 (174)
Q Consensus 101 ~~G~icl~~l--~~~~W~p~~ti~~il~~i~~ll~~p~ 136 (174)
.+.++|||+. |++.|+|.|+|.+||.+|.++|.+..
T Consensus 82 tntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 82 TNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDS 119 (244)
T ss_pred cCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence 5789999998 68999999999999999999998643
No 20
>KOG0428|consensus
Probab=99.90 E-value=5.8e-24 Score=170.17 Aligned_cols=112 Identities=21% Similarity=0.419 Sum_probs=100.3
Q ss_pred CCcchhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCc
Q psy12515 19 ISNSRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPN 98 (174)
Q Consensus 19 ~s~~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 98 (174)
-+.+.|||++|.++++ ||.....+.|.++|+|+| +++|.||.||-|+||+||++|.||.+||++||.+..+|+-. .
T Consensus 9 KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEW-hFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG--R 84 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEW-HFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG--R 84 (314)
T ss_pred cCHHHHHHHHHHHHhc-CchhhhhhccchhceeeE-EEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC--c
Confidence 3568899999999999 999999999999999997 68899999999999999999999999999999999998421 2
Q ss_pred ccCCCcEEecCC--CCCCCCCCCCHHHHHHHHHHhhcC
Q psy12515 99 IDEKGQVCLPII--SAENWKPATKTDQVIQALIALVND 134 (174)
Q Consensus 99 v~~~G~icl~~l--~~~~W~p~~ti~~il~~i~~ll~~ 134 (174)
+..+.+|||+|. |++.|.|+|+|+..|++|..+|-.
T Consensus 85 FE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 85 FEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred eeeCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 445788999998 589999999999999999998863
No 21
>KOG0429|consensus
Probab=99.89 E-value=6.8e-23 Score=161.68 Aligned_cols=141 Identities=18% Similarity=0.330 Sum_probs=125.3
Q ss_pred hhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCC--CCCCceeeecccccCccc
Q psy12515 23 RRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYP--FKPPKINFKTKIYHPNID 100 (174)
Q Consensus 23 ~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP--~~pP~v~f~t~i~HPnv~ 100 (174)
...|+.|+........+||++.|+-.|-|.|+ +++.-..|.|.||+|+|+|.+|++|| .+.|+|.|.+.+|||+|.
T Consensus 21 ey~llAEf~lV~~ekL~gIyviPSyan~l~WF--GViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~ic 98 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIYVIPSYANKLLWF--GVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLIC 98 (258)
T ss_pred HHHHHHHHHHHHhccCCceEEcccccccceEE--EEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccC
Confidence 35677788888889999999999999999973 66677788999999999999999999 589999999999999999
Q ss_pred C-CCcEEecCCCCCCCCCC-CCHHHHHHHHHHhhcCCCCCCc--ccHHHHHHHHHcHHHHHHHHHHHHHH
Q psy12515 101 E-KGQVCLPIISAENWKPA-TKTDQVIQALIALVNDPEPEHP--LRADLADEFLKERKKFMKNAEDYTKK 166 (174)
Q Consensus 101 ~-~G~icl~~l~~~~W~p~-~ti~~il~~i~~ll~~p~~~~p--~n~ea~~~~~~~~~~f~~~~~~~~~k 166 (174)
+ ++.+|++.. ...|+-. ..|.+||..||..|++|+-..+ .|+||+.+|++++++|.++|+++++.
T Consensus 99 p~skeLdl~ra-f~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 99 PKSKELDLNRA-FPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred CCccceeHhhh-hhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8 899999987 4559775 5799999999999999976644 59999999999999999999999864
No 22
>KOG0895|consensus
Probab=99.75 E-value=7.6e-19 Score=163.10 Aligned_cols=114 Identities=24% Similarity=0.466 Sum_probs=97.2
Q ss_pred hhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecc--cccCcccCCC
Q psy12515 26 VAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTK--IYHPNIDEKG 103 (174)
Q Consensus 26 L~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPnv~~~G 103 (174)
.+.|+.-+..+.+.||.++-. ++.|....++|.||.||||.+|.|.|+|.||++||.+||.|...+. .++||.|.+|
T Consensus 856 ~~~~~~~~~~~~~~~~~vr~~-e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g 934 (1101)
T KOG0895|consen 856 VQTEWKILPLSLPSGIFVRAY-EDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDG 934 (1101)
T ss_pred HHHHHHhhhccCCCceEEEec-hHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccccc
Confidence 344556677888889888754 5566666789999999999999999999999999999999999986 6899999999
Q ss_pred cEEecCCC------CCCCCCCCCHHHHHHHHHHhhc--CCCCCCc
Q psy12515 104 QVCLPIIS------AENWKPATKTDQVIQALIALVN--DPEPEHP 140 (174)
Q Consensus 104 ~icl~~l~------~~~W~p~~ti~~il~~i~~ll~--~p~~~~p 140 (174)
+||+++|+ .+.|+|+.++.+||.+||.|+. .|.++++
T Consensus 935 ~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 935 KVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEA 979 (1101)
T ss_pred ceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCcc
Confidence 99999995 5789999999999999999876 3444433
No 23
>KOG0895|consensus
Probab=99.60 E-value=2.9e-15 Score=139.56 Aligned_cols=113 Identities=27% Similarity=0.483 Sum_probs=101.8
Q ss_pred chhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecc---cccCc
Q psy12515 22 SRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTK---IYHPN 98 (174)
Q Consensus 22 ~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~HPn 98 (174)
-.+|+++|++-+..+++.++.++|.+.+ |....++|+||.||||++|+|.|+|.||..||..||.|.+++. .+.||
T Consensus 283 ~skrv~ke~~llskdlpEgifvrp~e~R-Md~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 283 WSKKVAKELKLLSKDLPEGIFVRPDEGR-MDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred hHHHHHHHhhhhcccCCCCccccccccc-cceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 4489999999999999999999988664 4445899999999999999999999999999999999999987 68999
Q ss_pred ccCCCcEEecCCC------CCCCCCC-CCHHHHHHHHHHhhcCC
Q psy12515 99 IDEKGQVCLPIIS------AENWKPA-TKTDQVIQALIALVNDP 135 (174)
Q Consensus 99 v~~~G~icl~~l~------~~~W~p~-~ti~~il~~i~~ll~~p 135 (174)
.|.+|+||+++|. .+.|+|. .++.++|.+||.++.+.
T Consensus 362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 9999999999984 3789998 89999999999998754
No 24
>KOG0896|consensus
Probab=99.39 E-value=8.8e-13 Score=97.19 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=85.4
Q ss_pred hhhhcchhHhhhCC---CCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCccc
Q psy12515 24 RKVAHPHFQCVTDL---IFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNID 100 (174)
Q Consensus 24 ~RL~~e~~~l~~~~---~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 100 (174)
-||..|+.+=+.-. ..+..+...++-.+.-|...|+||+.|+||+-+|.++|.+.++||..||.|+|.+++.-+.|+
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn 87 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN 87 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence 46777775543322 233333444444567789999999999999999999999999999999999999999888888
Q ss_pred C-CCcEEecCCC-CCCCCCCCCHHHHHHHHHHhhc
Q psy12515 101 E-KGQVCLPIIS-AENWKPATKTDQVIQALIALVN 133 (174)
Q Consensus 101 ~-~G~icl~~l~-~~~W~p~~ti~~il~~i~~ll~ 133 (174)
. +|.|.-.-++ -.+|+-.+++..||..++.+|.
T Consensus 88 ~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 88 SSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred cCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 6 7777533222 3899999999999999996554
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.54 E-value=2.5e-07 Score=69.12 Aligned_cols=68 Identities=24% Similarity=0.730 Sum_probs=60.7
Q ss_pred CCCceEEEEecCCCCCCCCCceeeeccc---ccCcccCCCcEEe---cCCCCCCCCCCCCHHHHHHHHHHhhcCC
Q psy12515 67 NKGAFKIEINFPAEYPFKPPKINFKTKI---YHPNIDEKGQVCL---PIISAENWKPATKTDQVIQALIALVNDP 135 (174)
Q Consensus 67 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnv~~~G~icl---~~l~~~~W~p~~ti~~il~~i~~ll~~p 135 (174)
.|+.+.+.|.||++||..||.|....+. +-|||+.+|.+|+ +.. .+.|+|.-++.++|.+.+.+|.+.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~-~D~~~P~~~~~~~l~~a~~lL~~~ 107 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELV-LDPWDPEGIIADCLERAIRLLEDG 107 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcc-cCccCHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999988654 6899999999999 555 789999999999999999998843
No 26
>KOG0897|consensus
Probab=98.42 E-value=6.1e-07 Score=64.72 Aligned_cols=86 Identities=21% Similarity=0.424 Sum_probs=64.2
Q ss_pred eEEEEecCCCCCCCCCceeeecccccCccc-----CCCcEEecCCCCCCCCCCCCHHHHHHHHHHhhcCCC--CCCcccH
Q psy12515 71 FKIEINFPAEYPFKPPKINFKTKIYHPNID-----EKGQVCLPIISAENWKPATKTDQVIQALIALVNDPE--PEHPLRA 143 (174)
Q Consensus 71 f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~-----~~G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~p~--~~~p~n~ 143 (174)
.-+.+.|+++||+.||.++-.. |.++ .+|.||..+|..++|+.+++|+.++++|-.++.... ...+++.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~----p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k 88 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVK----PLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEK 88 (122)
T ss_pred eEeeeecccCCCCCCCcceeee----ecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcch
Confidence 4567789999999999998665 4544 589999999999999999999999999999998653 4445544
Q ss_pred HHHHHHH--HcHHHHHHHHH
Q psy12515 144 DLADEFL--KERKKFMKNAE 161 (174)
Q Consensus 144 ea~~~~~--~~~~~f~~~~~ 161 (174)
+-. +|. +-.+.|...++
T Consensus 89 ~sk-~~s~~qa~~sfksLv~ 107 (122)
T KOG0897|consen 89 SSK-LYSHSQAQQSFKSLVQ 107 (122)
T ss_pred hhh-HhhHHHHHHHHHHHHH
Confidence 433 553 33344555544
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.32 E-value=7.2e-07 Score=65.76 Aligned_cols=74 Identities=27% Similarity=0.560 Sum_probs=53.1
Q ss_pred EEcCCCCCCCCCce--EEEEecCCCCCCCCCceeeecccc-----cCcccCCCcEEecCCCCCCCCC-CCCHHHHHHHHH
Q psy12515 58 LEFQDNPPYNKGAF--KIEINFPAEYPFKPPKINFKTKIY-----HPNIDEKGQVCLPIISAENWKP-ATKTDQVIQALI 129 (174)
Q Consensus 58 i~gp~~tpy~gg~f--~~~i~fp~~YP~~pP~v~f~t~i~-----HPnv~~~G~icl~~l~~~~W~p-~~ti~~il~~i~ 129 (174)
+.|==--.|+|..| .+.|.+|.+||..||.|....... +.+|+.+|+|.+..| ++|++ ..++.+++..++
T Consensus 35 L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL--~~W~~~~s~L~~lv~~l~ 112 (121)
T PF05743_consen 35 LYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL--QNWNPPSSNLVDLVQELQ 112 (121)
T ss_dssp EEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH--HT--TTTS-HHHHHHHHH
T ss_pred EecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh--ccCCCCCCCHHHHHHHHH
Confidence 44433335888888 578889999999999998775421 339999999999999 78988 789999999999
Q ss_pred Hhhc
Q psy12515 130 ALVN 133 (174)
Q Consensus 130 ~ll~ 133 (174)
..|.
T Consensus 113 ~~F~ 116 (121)
T PF05743_consen 113 AVFS 116 (121)
T ss_dssp HCCC
T ss_pred HHHh
Confidence 8876
No 28
>KOG2391|consensus
Probab=97.56 E-value=0.00022 Score=60.54 Aligned_cols=77 Identities=29% Similarity=0.533 Sum_probs=62.1
Q ss_pred EEcCCCCCCCCCce--EEEEecCCCCCCCCCceeeecc-----cccCcccCCCcEEecCCCCCCCCC-CCCHHHHHHHHH
Q psy12515 58 LEFQDNPPYNKGAF--KIEINFPAEYPFKPPKINFKTK-----IYHPNIDEKGQVCLPIISAENWKP-ATKTDQVIQALI 129 (174)
Q Consensus 58 i~gp~~tpy~gg~f--~~~i~fp~~YP~~pP~v~f~t~-----i~HPnv~~~G~icl~~l~~~~W~p-~~ti~~il~~i~ 129 (174)
+.|=--.+|.|..| .+.|.+.+.||..||.|.-... -.|-+|+.+|+|.|.+| ..|.+ +.++..++..|.
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL--h~W~~pssdLv~Liq~l~ 132 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL--HNWDPPSSDLVGLIQELI 132 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh--ccCCCccchHHHHHHHHH
Confidence 45555567888887 4788899999999999866542 24889999999999999 58987 678899999999
Q ss_pred HhhcCCC
Q psy12515 130 ALVNDPE 136 (174)
Q Consensus 130 ~ll~~p~ 136 (174)
+.|.++.
T Consensus 133 a~f~~~p 139 (365)
T KOG2391|consen 133 AAFSEDP 139 (365)
T ss_pred HHhcCCC
Confidence 8887643
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.73 E-value=0.00072 Score=50.86 Aligned_cols=111 Identities=12% Similarity=0.157 Sum_probs=48.2
Q ss_pred cccccccccCCCCCcchhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCc--------e--EEEEe
Q psy12515 7 WLCSTAYEKNTNISNSRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGA--------F--KIEIN 76 (174)
Q Consensus 7 ~~~~~~~~~~~~~s~~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~--------f--~~~i~ 76 (174)
+||++.+.-+ +-..-..||..||..|.+- +.....+.-.|+ -+=--+.||-|.|.. | .+.+.
T Consensus 11 Pll~~~AGPr-d~~~W~~RLKEEy~aLI~Y------v~~nK~~DndWF-~lesn~~GT~W~GkCW~~h~l~kYEF~~eFd 82 (161)
T PF08694_consen 11 PLLKTKAGPR-DGDLWVQRLKEEYQALIKY------VENNKENDNDWF-RLESNKEGTRWFGKCWYIHNLLKYEFDLEFD 82 (161)
T ss_dssp ---SS---TT-SCHHHHHHHHHHHHHHHHH------HHHHHHTT---E-EEEE-TTSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccccccCCCC-CHHHHHHHHHHHHHHHHHH------HHhcccccCCeE-EeccCCCCCccccEEEEEeeeeeEEEeeecC
Confidence 5677765432 2244668999999877541 111112222332 222447777776654 3 35556
Q ss_pred cCCCCCCCCCceeeeccc-ccCcccCCCcEEecCCCCCCC---CCCCCHHHHH
Q psy12515 77 FPAEYPFKPPKINFKTKI-YHPNIDEKGQVCLPIISAENW---KPATKTDQVI 125 (174)
Q Consensus 77 fp~~YP~~pP~v~f~t~i-~HPnv~~~G~icl~~l~~~~W---~p~~ti~~il 125 (174)
+|..||..||.|....-- --.-.|..|+||++.-...-| .|.++|...|
T Consensus 83 IP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 83 IPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp --TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 699999999999764211 112244689999976533334 4556665543
No 30
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.44 E-value=0.098 Score=40.44 Aligned_cols=63 Identities=21% Similarity=0.469 Sum_probs=50.1
Q ss_pred EEEEecCCCCCCCCCceeeecccc---cCcccCC-----CcEEecCCCCCCCCCCCCHHHHHHHHHHhhcC
Q psy12515 72 KIEINFPAEYPFKPPKINFKTKIY---HPNIDEK-----GQVCLPIISAENWKPATKTDQVIQALIALVND 134 (174)
Q Consensus 72 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnv~~~-----G~icl~~l~~~~W~p~~ti~~il~~i~~ll~~ 134 (174)
.+.|.|+.+||..+|.|.+.-..| +|++... ..+|+..-.-..|.+..++..+|..|...|.+
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 467899999999999877665432 5777754 67898766557899999999999999988864
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.10 E-value=0.19 Score=37.03 Aligned_cols=90 Identities=13% Similarity=0.242 Sum_probs=57.6
Q ss_pred ceeeecCccccceeeeeeEEc--CCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcccCCCcE--EecCC-----
Q psy12515 40 SLKFKPWVLSYFQYYFFPLEF--QDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQV--CLPII----- 110 (174)
Q Consensus 40 ~i~~~p~~~~~~~~~~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~i--cl~~l----- 110 (174)
|+..+...+....| ++|.| .+.+.|.+..-.+-|.+|..||..+|.+.+..+-.... ..|.| |-...
T Consensus 13 g~~~E~v~eg~~~~--lii~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 13 GLRWETVTEGGRRW--LIIKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred CceEEEEEeCCccE--EEEeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 44444444455554 33555 56677999999999999999999999887776522111 12223 32211
Q ss_pred --------CCCCCCCCC-CHHHHHHHHHHhhc
Q psy12515 111 --------SAENWKPAT-KTDQVIQALIALVN 133 (174)
Q Consensus 111 --------~~~~W~p~~-ti~~il~~i~~ll~ 133 (174)
|...|+|.. +|.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 246788865 68888888887664
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.69 E-value=0.99 Score=31.22 Aligned_cols=25 Identities=20% Similarity=0.553 Sum_probs=21.3
Q ss_pred CCceEEEEecCCCCCCCCCceeeec
Q psy12515 68 KGAFKIEINFPAEYPFKPPKINFKT 92 (174)
Q Consensus 68 gg~f~~~i~fp~~YP~~pP~v~f~t 92 (174)
...+.+.+.||++||..+|.|.+.+
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEEC
Confidence 3458899999999999999998765
No 33
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=92.04 E-value=0.13 Score=36.13 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=22.2
Q ss_pred CCCCCCCCceEEEEecCCCCCCCCCceeeecc
Q psy12515 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTK 93 (174)
Q Consensus 62 ~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 93 (174)
..+.-....+.+.+.||++||..+|.|...+.
T Consensus 42 ~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 42 SFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp CCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred ccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 34444455789999999999999999987664
No 34
>KOG3357|consensus
Probab=89.77 E-value=0.8 Score=34.17 Aligned_cols=88 Identities=11% Similarity=0.213 Sum_probs=50.8
Q ss_pred chhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCc--------eEEEEe--cCCCCCCCCCceeee
Q psy12515 22 SRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGA--------FKIEIN--FPAEYPFKPPKINFK 91 (174)
Q Consensus 22 ~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~--------f~~~i~--fp~~YP~~pP~v~f~ 91 (174)
-.+||..||+.+..-. +....+.-.| +-+--.+.||-|-|.. |+|++. +|-.||...|.+...
T Consensus 28 wvqrlkeey~sli~yv------qnnk~~d~dw-frlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialp 100 (167)
T KOG3357|consen 28 WVQRLKEEYQSLIAYV------QNNKSNDNDW-FRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALP 100 (167)
T ss_pred HHHHHHHHHHHHHHHH------HhCcccCCcc-eEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccc
Confidence 4589999997774311 1111222233 2233558888887764 345554 589999999998653
Q ss_pred cccc-cCcccCCCcEEecCCCCCCCC
Q psy12515 92 TKIY-HPNIDEKGQVCLPIISAENWK 116 (174)
Q Consensus 92 t~i~-HPnv~~~G~icl~~l~~~~W~ 116 (174)
.--. ---.+..|+||+.--...-|.
T Consensus 101 eldgktakmyrggkiclt~hfkplwa 126 (167)
T KOG3357|consen 101 ELDGKTAKMYRGGKICLTDHFKPLWA 126 (167)
T ss_pred ccCchhhhhhcCceEeeccccchhhh
Confidence 2100 011345899999654344553
No 35
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=70.96 E-value=10 Score=32.60 Aligned_cols=58 Identities=31% Similarity=0.589 Sum_probs=40.9
Q ss_pred CCCCCceEEEEecCCCCCCCCCceeeec-ccccCcccCCCcEEecCCCCCCCCCCC--CHHHHHHHHH
Q psy12515 65 PYNKGAFKIEINFPAEYPFKPPKINFKT-KIYHPNIDEKGQVCLPIISAENWKPAT--KTDQVIQALI 129 (174)
Q Consensus 65 py~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPnv~~~G~icl~~l~~~~W~p~~--ti~~il~~i~ 129 (174)
||.|...+-+|.|...||..||.+.|.. .-|+|... . +..| .+|++.- .+..++..|.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L--~~Wd~~dp~~Ll~li~EL~ 121 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL--VNWDPSDPNCLLNLISELR 121 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh--hcCCCCCchHHHHHHHHHH
Confidence 7888899999999999999999999973 34777432 2 2233 6787753 3555555444
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=63.16 E-value=7.9 Score=32.67 Aligned_cols=88 Identities=17% Similarity=0.355 Sum_probs=53.6
Q ss_pred CcchhhhhcchhHhhhCCCCceeeecCccccceeeeeeEEcCCCCCCCCCceEEEEecCCCCCCCCCceeeecccccCcc
Q psy12515 20 SNSRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNI 99 (174)
Q Consensus 20 s~~~~RL~~e~~~l~~~~~~~i~~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 99 (174)
+....+|.+|+.++..+....+.+-. .+.-..+.+.. + +....++|.++.+||.++|.+...-++
T Consensus 98 ~~~ys~ll~EIe~IGW~kl~~i~~d~----~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~~~~P~----- 162 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKLVQIQFDD----DLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCSLDLPI----- 162 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCCEEEEE-C----CCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEECS-TTS-----
T ss_pred cHHHHHHHHHHHHhccccceEEecCC----CccEEEEEEEc---C---CceEEEEEEECCCCCCCCceeeCCCCc-----
Confidence 55778999999999888766554332 22211222222 1 135779999999999999976533321
Q ss_pred cCCCcEEecCCCCCCCCC-CCCHHHHHHHHHHhh
Q psy12515 100 DEKGQVCLPIISAENWKP-ATKTDQVIQALIALV 132 (174)
Q Consensus 100 ~~~G~icl~~l~~~~W~p-~~ti~~il~~i~~ll 132 (174)
.+ ...|.+ ..++.+|+...+..+
T Consensus 163 --------~~--~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 163 --------PF--SLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp ---------H--HHHHHCHT-SHHHHHHHHHHHH
T ss_pred --------ch--hhhhcccccCHHHHHHHHHHHH
Confidence 00 246888 778888877776665
No 37
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=52.00 E-value=23 Score=27.38 Aligned_cols=35 Identities=29% Similarity=0.307 Sum_probs=21.1
Q ss_pred CcccCCCcEEecCCCCCCCCCCCCHHHHHHHHHH-hhcCC
Q psy12515 97 PNIDEKGQVCLPIISAENWKPATKTDQVIQALIA-LVNDP 135 (174)
Q Consensus 97 Pnv~~~G~icl~~l~~~~W~p~~ti~~il~~i~~-ll~~p 135 (174)
+||+.+|+||..-. =.|.......+..+.. +|.++
T Consensus 98 ~NV~~~g~vC~G~~----~~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 98 FNVYSNGSVCWGNN----SLPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred cccCCCCcEeeCCC----cCCCccCHHHHHHHHHHHhCCC
Confidence 48999999998653 2344444444555554 44444
No 38
>KOG4018|consensus
Probab=50.23 E-value=15 Score=29.74 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=18.5
Q ss_pred ceEEEEecCCCCCCCCCcee
Q psy12515 70 AFKIEINFPAEYPFKPPKIN 89 (174)
Q Consensus 70 ~f~~~i~fp~~YP~~pP~v~ 89 (174)
.+.+.+.++.+||..+|-+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 78899999999999999993
No 39
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=49.69 E-value=43 Score=21.94 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=34.2
Q ss_pred HHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCC
Q psy12515 127 ALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRP 172 (174)
Q Consensus 127 ~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a~~~~ 172 (174)
.|+.|+..-++...+++++.++..+=-+.|...+-..+.+.|.-|.
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~ 49 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRK 49 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4677888778888899999999999999999999888888775444
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=48.02 E-value=25 Score=26.30 Aligned_cols=26 Identities=35% Similarity=0.774 Sum_probs=22.9
Q ss_pred CCCceEEEEecCCCCC-CCCCceeeec
Q psy12515 67 NKGAFKIEINFPAEYP-FKPPKINFKT 92 (174)
Q Consensus 67 ~gg~f~~~i~fp~~YP-~~pP~v~f~t 92 (174)
+.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3489999999999999 9999998864
No 41
>KOG0309|consensus
Probab=45.05 E-value=61 Score=31.29 Aligned_cols=36 Identities=25% Similarity=0.576 Sum_probs=25.1
Q ss_pred eEEcCCCCCCCCCce-EEEEecCCCCCC-CCCceeeecc
Q psy12515 57 PLEFQDNPPYNKGAF-KIEINFPAEYPF-KPPKINFKTK 93 (174)
Q Consensus 57 ~i~gp~~tpy~gg~f-~~~i~fp~~YP~-~pP~v~f~t~ 93 (174)
.+-||- .+-.|-+| ++.|.||.+||. .+|.++|..+
T Consensus 454 sln~p~-~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 454 SLNCPN-HRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred EecCCC-CccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 344443 33355555 899999999995 6789998853
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=43.66 E-value=31 Score=27.22 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=23.2
Q ss_pred CCCceEEEEecCCCCCCCCCceeeec
Q psy12515 67 NKGAFKIEINFPAEYPFKPPKINFKT 92 (174)
Q Consensus 67 ~gg~f~~~i~fp~~YP~~pP~v~f~t 92 (174)
+.|.|.|.=.+|--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 45889999999999999999998874
No 43
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=37.46 E-value=18 Score=26.52 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=30.7
Q ss_pred ccccccccccCCCCCcchhhhhcchhHhhhCCCCcee
Q psy12515 6 SWLCSTAYEKNTNISNSRRKVAHPHFQCVTDLIFSLK 42 (174)
Q Consensus 6 ~~~~~~~~~~~~~~s~~~~RL~~e~~~l~~~~~~~i~ 42 (174)
.-+|+...-.++.....+.||++|+.....|+..|-.
T Consensus 12 eV~~dP~~~~pRk~~krr~rLl~Ef~rR~GDpn~GGs 48 (118)
T PF09929_consen 12 EVLCDPGPYAPRKNKKRRSRLLREFQRRSGDPNVGGS 48 (118)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc
Confidence 4578888777778777899999999999999987653
No 44
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=37.20 E-value=1.1e+02 Score=20.02 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=34.6
Q ss_pred HHHHhhcCCCCCCcccHHHHHHHHHcHHHHHHHHHHHHHHhcC
Q psy12515 127 ALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSE 169 (174)
Q Consensus 127 ~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a~ 169 (174)
.|+.|+..-++.....++|...+.+--+.|...+-+-+.++|.
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666656667789999999999999999999888877773
No 45
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=35.91 E-value=49 Score=25.28 Aligned_cols=25 Identities=24% Similarity=0.703 Sum_probs=22.2
Q ss_pred CCceEEEEecCCCCC-----CCCCceeeec
Q psy12515 68 KGAFKIEINFPAEYP-----FKPPKINFKT 92 (174)
Q Consensus 68 gg~f~~~i~fp~~YP-----~~pP~v~f~t 92 (174)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 588999999999999 8999998864
No 46
>PF15586 Imm47: Immunity protein 47
Probab=31.87 E-value=69 Score=23.25 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=28.2
Q ss_pred eecCccccceeeeeeEEcCCCCCCCCCceEEEEecCC
Q psy12515 43 FKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPA 79 (174)
Q Consensus 43 ~~p~~~~~~~~~~~~i~gp~~tpy~gg~f~~~i~fp~ 79 (174)
..|.+.++|-.|.-+.+||.|.+ .+-.|.+.|.=|+
T Consensus 18 ~~Ped~~~F~~~l~l~IG~~~~~-G~d~F~v~VcTP~ 53 (116)
T PF15586_consen 18 YVPEDPDNFCFWLELDIGPEGED-GSDYFQVFVCTPK 53 (116)
T ss_pred CCCCCCcceEEEEEEEECCCCCC-ccceEEEEEEcHH
Confidence 45888899998899999999998 3556777766553
No 47
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=29.11 E-value=63 Score=27.91 Aligned_cols=22 Identities=23% Similarity=0.750 Sum_probs=19.6
Q ss_pred eEEEEecCCCCCCCCCceeeec
Q psy12515 71 FKIEINFPAEYPFKPPKINFKT 92 (174)
Q Consensus 71 f~~~i~fp~~YP~~pP~v~f~t 92 (174)
|-+.|.+|..||...|.++|.+
T Consensus 308 flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 308 FLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEeccCCCCCcCCeEEEEe
Confidence 6677888999999999999976
No 48
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=27.24 E-value=1.4e+02 Score=20.65 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=20.7
Q ss_pred CCCCceEEEEecCCCCCCCCCceeeecc
Q psy12515 66 YNKGAFKIEINFPAEYPFKPPKINFKTK 93 (174)
Q Consensus 66 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 93 (174)
-+|..+.|.-.-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35677888888899999 589988865
No 49
>KOG0177|consensus
Probab=27.15 E-value=83 Score=25.06 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=23.7
Q ss_pred CCcEEecCCCCCCCCCCCCHHHHHHHHHHhh
Q psy12515 102 KGQVCLPIISAENWKPATKTDQVIQALIALV 132 (174)
Q Consensus 102 ~G~icl~~l~~~~W~p~~ti~~il~~i~~ll 132 (174)
.+..|++++ ...|+|.+|+.+-+.-++-++
T Consensus 135 ~~~f~~sIl-Dr~Y~pdmt~eea~~lmkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSIL-DRYYKPDMTIEEALDLMKKCV 164 (200)
T ss_pred hhhhhHHHH-HhhhCCCCCHHHHHHHHHHHH
Confidence 567899999 689999999887766555444
No 50
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=26.08 E-value=85 Score=24.83 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=21.5
Q ss_pred CCCceEEEEecCCCCCC-----CCCceeeec
Q psy12515 67 NKGAFKIEINFPAEYPF-----KPPKINFKT 92 (174)
Q Consensus 67 ~gg~f~~~i~fp~~YP~-----~pP~v~f~t 92 (174)
+.|.|.|.=..|-.||. .||.|.|.-
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 35789999999999998 888887753
No 51
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=24.05 E-value=1e+02 Score=24.22 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=19.7
Q ss_pred CCceEEEEecCCCCCC-----CCCceeee
Q psy12515 68 KGAFKIEINFPAEYPF-----KPPKINFK 91 (174)
Q Consensus 68 gg~f~~~i~fp~~YP~-----~pP~v~f~ 91 (174)
.|.|.|.-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999995 77777664
No 52
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=23.82 E-value=1.8e+02 Score=19.60 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=26.6
Q ss_pred CcccHHHHHHHHHcHHHHHHHHHHHHHHhc
Q psy12515 139 HPLRADLADEFLKERKKFMKNAEDYTKKHS 168 (174)
Q Consensus 139 ~p~n~ea~~~~~~~~~~f~~~~~~~~~k~a 168 (174)
.|.|.+|-..|.+-.++..+..+++.++|.
T Consensus 25 HP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 25 HPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 577899999999988889999999999886
No 53
>smart00340 HALZ homeobox associated leucin zipper.
Probab=21.37 E-value=41 Score=20.17 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=12.0
Q ss_pred cchhhhhcchhHhhh
Q psy12515 21 NSRRKVAHPHFQCVT 35 (174)
Q Consensus 21 ~~~~RL~~e~~~l~~ 35 (174)
.-.|||++|+.++..
T Consensus 19 eeNrRL~ke~~eLra 33 (44)
T smart00340 19 EENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHh
Confidence 346899999998865
Done!