RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12515
(174 letters)
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 174 bits (444), Expect = 7e-57
Identities = 97/113 (85%), Positives = 108/113 (95%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
DNPPY+KGAF+IEINFPAEYPFKPPKI FKTKIYHPNIDEKGQVCLP+ISAENWKPATKT
Sbjct: 42 DNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKT 101
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPSD 174
DQVIQ+LIALVNDP+PEHPLRADLA+E+ K+RKKF KNAE++TKK+ EKRP D
Sbjct: 102 DQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 170 bits (434), Expect = 2e-55
Identities = 67/112 (59%), Positives = 80/112 (71%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
D PPY+ AF + I+FP EYPFKPP I F TKIYHPN+DE GQ+CLPIIS+ENWKP TKT
Sbjct: 44 DQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKT 103
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPS 173
QV++AL LVN P PLR DLAD + + F KNAE++T + RPS
Sbjct: 104 CQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS 155
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 149 bits (379), Expect = 7e-47
Identities = 46/116 (39%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISA---ENWKPA 118
N PY KG FK+E+ P YPF+PP+I F T IYHPNID G++CL ++ W+P+
Sbjct: 44 ANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPS 103
Query: 119 TKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPSD 174
V+ ++ L+++P P+ PL AD++ EF + F+KNA +T+KH+ ++
Sbjct: 104 LNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKA 159
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 149 bits (377), Expect = 1e-46
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPI-----ISAENWK 116
D Y G F+ E P Y PPK+ TKI+HPNI E G++CL + I W
Sbjct: 54 DEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWA 113
Query: 117 PATKTDQVIQALIALVND-PEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
P V+ L +L D + PL + A+ L++++ F +DY K++
Sbjct: 114 PTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY 165
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 148 bits (376), Expect = 2e-46
Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
D Y G F YP PPK+ +T +YHPNID +G VCL I+ E+WKP
Sbjct: 44 DEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-EDWKPVLTI 102
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ +I L L +P PE PL + A+ R+ F +N + +
Sbjct: 103 NSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY 149
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 145 bits (367), Expect = 6e-45
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
D Y G F YP PPK+ +T +YHPNID +G V L I+ E+WKP
Sbjct: 64 DEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILR-EDWKPVLTI 122
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ +I L L +P PE PL + A+ R+ F +N + +
Sbjct: 123 NSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY 169
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 144 bits (365), Expect = 2e-44
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 45 PWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQ 104
+ P D YN G+ ++F YP +PPK+ KI+HPNID KG
Sbjct: 60 RSQSPKLEVIVRP----DEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGN 115
Query: 105 VCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYT 164
VCL I+ E+W PA +I L+ L +P P PL D A + K+F +
Sbjct: 116 VCLNILR-EDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTM 174
Query: 165 KKHS 168
S
Sbjct: 175 SGGS 178
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 139 bits (353), Expect = 1e-42
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
Y G F ++I F EYPFKPPK+ F+T+IYH NI+ +G +CL I+ +NW PA
Sbjct: 88 PGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK-DNWSPALTI 146
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+V+ ++ +L+ D P PL +A +++ R + + A +TK++
Sbjct: 147 SKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 192
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 136 bits (344), Expect = 1e-41
Identities = 42/108 (38%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G F++E+ P +YP + PK+ F TKIYHPNID G++CL ++ NW PA + V
Sbjct: 48 PYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK-TNWSPALQIRTV 106
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRP 172
+ ++ AL+ P P PL D+A++++K + A ++TK +++K+P
Sbjct: 107 LLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKKP 154
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 137 bits (347), Expect = 2e-41
Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKTDQ 123
PY G F ++I P EYPFKPPK+ F TK+YHPNI G +CL I+ W P
Sbjct: 46 PYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR-NAWSPVITLKS 104
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPSD 174
+ +L AL+ PEP P A++A +L++R+ F K A +T+ ++ + +
Sbjct: 105 ALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETSNG 155
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 135 bits (341), Expect = 2e-41
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNID-EKGQVCLPIISAENWKPATK 120
PY G F ++I P EYPFKPPK+ F TK+YHPNI G +CL I+ W P
Sbjct: 42 PGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK-NAWSPVIT 100
Query: 121 TDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+ +L AL+ PEP P A++A +L++R+ F K A +T+ +
Sbjct: 101 LKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLY 147
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 132 bits (333), Expect = 5e-40
Identities = 42/103 (40%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY+ G F + I+FP++YPFKPPK+NF TKIYHPNI+ +G +CL I+ + W PA +V
Sbjct: 64 PYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILK-DQWSPALTISKV 122
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+ ++ +L+ DP P+ PL ++A + +R ++ + A ++++K+
Sbjct: 123 LLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKY 165
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 129 bits (326), Expect = 4e-39
Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G +K+E+ P +YP +PPK+ F TKIYHPNID+ G++CL I+ + W PA + V
Sbjct: 44 PYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTV 102
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+ ++ AL++ PEP+ PL + +A+ F +++ A + K +
Sbjct: 103 LLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIY 145
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 128 bits (325), Expect = 6e-39
Identities = 41/103 (39%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ W PA +V
Sbjct: 47 PYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-SQWSPALTISKV 105
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+ ++ +L+ DP P+ PL ++A + +R+++ + A ++T+K+
Sbjct: 106 LLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKY 148
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 128 bits (324), Expect = 1e-38
Identities = 38/103 (36%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
P+ G FK+E+ P EYP PK+ F TKIYHPN+D+ G++CL I+ + W PA + V
Sbjct: 48 PFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK-DKWSPALQIRTV 106
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+ ++ AL++ P P+ PL D+A+++ + ++ A +T+ +
Sbjct: 107 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 149
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 128 bits (323), Expect = 2e-38
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G F++++ ++P PPK F TKI+HPN+ G++C+ ++ +W V
Sbjct: 56 PYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK-RDWTAELGIRHV 114
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+ + L+ P PE L + L+ +++ A T+ H
Sbjct: 115 LLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH 157
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 128 bits (323), Expect = 2e-38
Identities = 42/103 (40%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G +CL I+ W PA +V
Sbjct: 62 PYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-SQWSPALTISKV 120
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K+
Sbjct: 121 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 163
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 127 bits (322), Expect = 3e-38
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEK-GQVCLPIISAENWKPATKTDQ 123
PY G + + + P++YPFK P I F +I HPN+DE+ G VCL +I+ + W P + +
Sbjct: 51 PYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVIN-QTWTPMYQLEN 109
Query: 124 VIQALI-ALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPSD 174
+ + L+ P P PL A +R F ++ H+ + +
Sbjct: 110 IFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATPQKAL 161
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 126 bits (319), Expect = 6e-38
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKTDQ 123
PY G +++EI P YPF PPK+ F TKI+HPNI G +CL I+ + W A
Sbjct: 54 PYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-DQWAAAMTLRT 112
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
V+ +L AL+ EP+ P A +A+++ + + F + A + +
Sbjct: 113 VLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 156
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 126 bits (319), Expect = 2e-37
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEK-GQVCLPIISAENWKPATKTDQ 123
PY G +++EI P YPF PPK+ F TKI+HPNI G +CL I+ + W A
Sbjct: 51 PYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-DQWAAAMTLRT 109
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
V+ +L AL+ EP+ P A +A+++ + + F + A + +
Sbjct: 110 VLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 153
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 126 bits (317), Expect = 6e-37
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEK-GQVCLPIISAENWKPATKTDQ 123
PY G F + I P +YP+ PPKI F TKI+HPNI + G +CL ++ W PA
Sbjct: 66 PYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLK-NEWSPALTIRT 124
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+ ++ AL++DP+P+ P A++A + + F+K A +TK
Sbjct: 125 ALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTF 168
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 124 bits (314), Expect = 6e-37
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKTDQ 123
PY G +K+ ++ P +YPFK P I F KI+HPNIDE G VCL +I+ + W
Sbjct: 64 PYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN-QTWTALYDLTN 122
Query: 124 VIQALI-ALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+ ++ + L+ P P PL D A +L +++ + ++Y +K+
Sbjct: 123 IFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKY 167
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 123 bits (312), Expect = 6e-37
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDE-KGQVCLPIISAENWKPATKTDQ 123
Y G +K+ + P +YPF P I F K+ HPN+DE G VCL +I+ + W P
Sbjct: 42 AYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN-QTWTPLYSLVN 100
Query: 124 VIQALI-ALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
V + + L+ P P PL +D A +K++ + + ++Y K +
Sbjct: 101 VFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLY 145
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 125 bits (315), Expect = 6e-37
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEK-GQVCLPIISAENWKPATKTDQ 123
PY G F ++I P +YP+ PPK+ F TKI+HPNI + G +CL I+ W PA
Sbjct: 88 PYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILK-HEWSPALTIRT 146
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+ ++ A++ DP P P A++A ++ F++ A+ +T+
Sbjct: 147 ALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETF 190
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 123 bits (310), Expect = 2e-36
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINF-KTKIYHPNIDEK-GQVCLPIISAENWKPATKTD 122
PY F+I I P+ YP PPKI+F + I H N+ G++CL I+ E W P
Sbjct: 61 PYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLL 120
Query: 123 QVIQALIALVNDPEPEHPLRADLADEF-LKERKKFMKNAEDYTKKHSE 169
+ A+ L+ +P + PL D+ + + + + + +
Sbjct: 121 HCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERER 168
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 125 bits (315), Expect = 2e-36
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEK-GQVCLPIISAENWKPATKTDQ 123
PY G +++EI P YPF PPK+ F TKI+HPNI G +CL I+ + W A
Sbjct: 103 PYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-DQWAAAMTLRT 161
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
V+ +L AL+ EP+ P A +A+++ + + F + A + +
Sbjct: 162 VLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 205
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 121 bits (307), Expect = 4e-36
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII-SAENWKPATKTDQ 123
+ G + I + +P EYP KPPK+ F YHPN+ G +CL I+ ++W+PA Q
Sbjct: 52 NWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQ 111
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSE 169
++ + L++ P P P + F + + ++ K K++S+
Sbjct: 112 IVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 121 bits (307), Expect = 4e-36
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
Y +K+ + FP++YP+KPP + F T +HPN+D+ G +CL I+ ENW + +
Sbjct: 52 VYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK-ENWTASYDVRTI 110
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKR 171
+ +L +L+ +P PL A AD + + ++ K + K +
Sbjct: 111 LLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSDK 156
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 118 bits (297), Expect = 1e-34
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII-SAENWKPATKTDQ 123
P+ G FK+ + F +YP PPK F+ ++HPN+ G VCL I+ ++W+PA Q
Sbjct: 55 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 114
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
++ + L+N+P + P +A+ + + R ++ K KK
Sbjct: 115 ILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKF 158
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 116 bits (294), Expect = 3e-34
Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
P++ G FK+ + F +YP KPP + F ++++HPNI G +CL I+ W P +
Sbjct: 47 PWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAI 105
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSE 169
+ ++ +L+ DP P P ++ A + + ++++ + D ++
Sbjct: 106 LTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 117 bits (294), Expect = 6e-34
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G F++ + F EYP KPP + F ++++HPN+ G++CL I+ W P +
Sbjct: 47 PYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ-NRWTPTYDVASI 105
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPSD 174
+ ++ +L NDP P P + A F + +++K ++ +K E D
Sbjct: 106 LTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMDD 155
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 117 bits (294), Expect = 7e-34
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
Y +K+ + FP+ YP+ P + F T YHPN+D +G + L I+ E W +
Sbjct: 73 VYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILK-EKWSALYDVRTI 131
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+ ++ +L+ +P + PL A+ + K F K ++ K
Sbjct: 132 LLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQ 173
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 115 bits (290), Expect = 2e-33
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 62 DNPPYNK--GAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPAT 119
+ Y +++ + F +YP +PP + F T +Y P + +G +C +++ + W P
Sbjct: 60 ADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVN-DFWTPDQ 118
Query: 120 KTDQV---IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNA 160
V + + + + + K + F
Sbjct: 119 HASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARV 162
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 115 bits (290), Expect = 2e-33
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII-SAENWKPATKTDQ 123
+ G +K+ + FP EYP +PPK F ++HPN+ G VCL I+ E WKPA Q
Sbjct: 58 SWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQ 117
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
++ + L++DP P + + F K++ ++ K +++
Sbjct: 118 ILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQAREN 161
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 114 bits (287), Expect = 5e-33
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 12/114 (10%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII------------SA 112
+ G F ++FP +YP PPK+ F +++HPNI G+VC+ I+ SA
Sbjct: 47 CFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSA 106
Query: 113 ENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
E W P ++++ ++++++ +P E D + + +R++F K A+ +K
Sbjct: 107 ERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 113 bits (286), Expect = 8e-33
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEK-GQVCLPII-SAENWKPATKTD 122
+ F++ I+F +EY + PP + F T +HPN+D GQ C+ + + E W
Sbjct: 66 VWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLS 125
Query: 123 QVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTK 165
++ AL ++++P E+P+ + A +K+ + + +
Sbjct: 126 SILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLFNR 168
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 113 bits (284), Expect = 2e-32
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII------------SA 112
Y G FK + FP +YP+ PP F TK++HPNI E G VC+ I+ +
Sbjct: 51 YYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPS 110
Query: 113 ENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
E W P ++ ++I+L+N+P P D + + K ++ K+ E YT
Sbjct: 111 ERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDRE-YTDI 163
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 116 bits (292), Expect = 9e-32
Identities = 41/108 (37%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G + L I+ W PA +V
Sbjct: 46 PYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR-SQWSPALTISKV 104
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRP 172
+ ++ +L+ DP P+ PL ++A + +R+K+ + A ++T+K++
Sbjct: 105 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGS 152
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 110 bits (277), Expect = 2e-31
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPI------------ISA 112
PY G F ++ FP +YP PPK+ F I HPNI G+VC+ I ++
Sbjct: 48 PYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAE 107
Query: 113 ENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
E W P ++++ ++++++++P E D + R +F + + K
Sbjct: 108 ERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILK 161
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 106 bits (267), Expect = 6e-30
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII------------SA 112
Y G FK + FP +YP +PPK+ F T+I+HPN+D+ G VC+ I+
Sbjct: 61 LYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPE 120
Query: 113 ENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
E W P + ++ ++I+++ DP + P D A E+ ++R + +K
Sbjct: 121 ERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGE------FKRK 168
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 99.3 bits (248), Expect = 2e-27
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEK-GQVCLPIISAENWKPATKTDQ 123
+ + + I+ YP PPK+ F +KI P ++ G+V + +WK A +
Sbjct: 53 NHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMET 112
Query: 124 VIQALIALVNDPEPEHPLRADLADEF 149
++ L + P + + + F
Sbjct: 113 LLLDLRKEMATPANKKLRQPKEGETF 138
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 94.3 bits (235), Expect = 2e-25
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTK-IYHPNIDEKGQVCLPIISAENWKPATKTDQ 123
Y +KI+I FP YP KPP + F K H ++ G +CL ++ +++ P+
Sbjct: 63 IYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG-DDYNPSLSISG 121
Query: 124 VIQALIALVNDPEPE 138
+I ++I++++ + +
Sbjct: 122 LILSIISMLSSAKEK 136
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 93.1 bits (232), Expect = 3e-25
Identities = 19/78 (24%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTK-IYHPNIDEKGQVCLPIISAENWKPATK 120
+N Y +K++I FP +YP KPP + F K H ++ G +CL ++ +++ P+
Sbjct: 46 ENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG-DDYNPSLS 104
Query: 121 TDQVIQALIALVNDPEPE 138
++ ++I++++ + +
Sbjct: 105 ISGLVLSIISMLSSAKEK 122
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 92.5 bits (230), Expect = 1e-24
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQV----CLPIISAENWKPATK 120
Y + ++I +YP PP + F TKI ++ V + +++ W+ +
Sbjct: 72 IYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA--KWQNSYS 129
Query: 121 TDQVIQALIALVNDPEPEHPLRADLADEF 149
V+Q L L+ E + +
Sbjct: 130 IKVVLQELRRLMMSKENMKLPQPPEGQCY 158
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 90.2 bits (224), Expect = 1e-23
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQV----CLPIISAENWKPATK 120
Y + ++I +YP PP + F TKI ++ V + +++ W+ +
Sbjct: 82 IYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA--KWQNSYS 139
Query: 121 TDQVIQALIALVNDPEPEHPLRADLADEF 149
V+Q L L+ E + +
Sbjct: 140 IKVVLQELRRLMMSKENMKLPQPPEGQCY 168
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 89.7 bits (223), Expect = 2e-23
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISA-ENWKPATKTDQ 123
+ + + I YP PP + F TKI +D G+V + +NW +
Sbjct: 68 VFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIET 127
Query: 124 VIQAL-IALVNDPEPEHPLRAD 144
++ +L +++ P +
Sbjct: 128 ILISLRQEMLSSANKRLPQPNE 149
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 88.8 bits (220), Expect = 8e-23
Identities = 14/106 (13%), Positives = 36/106 (33%), Gaps = 2/106 (1%)
Query: 60 FQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPN-IDEKGQVCLPIISAENWKPA 118
+ +F +PF PP + + + G +C+ +++ + W A
Sbjct: 80 QILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSA 139
Query: 119 TKTDQVIQALIALVNDPEPEHPLRADLADEFLKE-RKKFMKNAEDY 163
+ VI + A + + A+ L ++ + + +
Sbjct: 140 YSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIH 185
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 87.9 bits (218), Expect = 2e-22
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQV 124
PY G + ++ FP E+PFKPP I T + + + + + W PA +
Sbjct: 57 PYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTI 116
Query: 125 IQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSE 169
+ L++ + + P +++ + + K
Sbjct: 117 LTGLLSFMVEKGPTLGSIETSDF----TKRQLAVQSLAFNLKDKV 157
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 82.8 bits (205), Expect = 4e-21
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTK--IYHPNIDEKGQVCLPIISAENWKPATKTD 122
Y F++ F + YPF P++ F + HP++ G +CL I++ E+W PA
Sbjct: 67 LYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT-EDWSPALSVQ 125
Query: 123 QVIQALIALVN 133
V ++I++++
Sbjct: 126 SVCLSIISMLS 136
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 79.0 bits (194), Expect = 3e-18
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYH-----PNIDEKGQVCLPII------SAE 113
PY G F+ ++ FP +YP PP +N +T H PN+ G+VCL I+ E
Sbjct: 123 PYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEE 182
Query: 114 NWKPATKT-DQV---IQALIALVNDPEPEHPL--RADLADEFLKERKKFMKNAEDYTKKH 167
W P T + QV +Q+LI LV +P P R+ + +++ N T K
Sbjct: 183 KWNPQTSSFLQVLVSVQSLI-LVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKW 241
Query: 168 S 168
+
Sbjct: 242 A 242
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomal sorting, ESCRT-I;
1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A*
Length = 162
Score = 42.3 bits (99), Expect = 1e-05
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 17/92 (18%)
Query: 56 FPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIY-----------HPNIDEKGQ 104
+ P++ + + P+ YP KPP I+ + + ID G
Sbjct: 71 ISTGEDGSSPHS---IPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGW 127
Query: 105 VCLPIISAENWKPATKT-DQVIQALIALVNDP 135
+ LPI+ W PA V+Q L++L+++P
Sbjct: 128 IALPIL--HAWDPAAMNLIMVVQELMSLLHEP 157
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 38.8 bits (90), Expect = 2e-04
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 53 YYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIY-----HPNIDEKGQVCL 107
P+ ++ N I + YP+ PP K ++D G++ L
Sbjct: 57 TGTIPVPYRGNTYN----IPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYL 112
Query: 108 PIISAENWKPATKT-DQVIQALIALVNDPEPEHPLRA 143
P + WK +IQ +I + D E P+ +
Sbjct: 113 PYL--HEWKHPQSDLLGLIQVMIVVFGD---EPPVFS 144
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila
melanogaster} SCOP: b.34.14.1
Length = 143
Score = 31.1 bits (70), Expect = 0.090
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 9 CSTAYEKNTNISNSRRKVAHPHFQCVTDLIFSLKFKPW-VLSYFQYYFFPLEFQDNPPYN 67
++ + +V + F K + SYF +PL+F N
Sbjct: 42 VVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKVTIASYFHSRNYPLKFPQLHCLN 101
Query: 68 KGAFKIEINFPAEY 81
G+ I P E
Sbjct: 102 VGSSIKSILLPIEL 115
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 27.9 bits (62), Expect = 0.89
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 38 IFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGA---FKIEINFPAEYPFKPPKINFKTK 93
IF + VLS + A ++ + P YP P I+ ++
Sbjct: 22 IFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISINSE 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.92
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 20/80 (25%)
Query: 102 KGQVCLPIISAENWK-PATKTDQVIQALIALVNDPE-------PEHPLRADLADEFLKER 153
+ QV ++ N PA K Q I+LVN + P+ L L R
Sbjct: 346 QEQV-QDYVNKTNSHLPAGK-----QVEISLVNGAKNLVVSGPPQ-----SLYGLNLTLR 394
Query: 154 KKFMKNAEDYTK-KHSEKRP 172
K + D ++ SE++
Sbjct: 395 KAKAPSGLDQSRIPFSERKL 414
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated
ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A
{Drosophila melanogaster} PDB: 1t2r_A 1t2s_A
Length = 124
Score = 27.2 bits (60), Expect = 1.7
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 9 CSTAYEKNTNISNSRRKVAHPHFQCVTDLIFSLKFKP-WVLSYFQYYFFPLEFQDNPPYN 67
++ + +V + F K + SYF +PL+F N
Sbjct: 40 VVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKVTIASYFHSRNYPLKFPQLHCLN 99
Query: 68 KGAFKIEINFPAE 80
G+ I P E
Sbjct: 100 VGSSIKSILLPIE 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 3.3
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 110 ISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMK 158
I E +P+ T I+ L ND + +LK R+ ++
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 26.2 bits (58), Expect = 5.6
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 112 AENWKPATKTDQVIQALIALVNDPEPEHPLR 142
A P V A++ +V + P R
Sbjct: 232 AAIVPPDADVSLVADAIVRVVGTASGKRPFR 262
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.2 bits (57), Expect = 6.4
Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 23/74 (31%)
Query: 51 FQYYFFPLEFQDNPPYNKGAFKI---EINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCL 107
++ E P+ A ++ EI F +DE + C
Sbjct: 161 KKFLVIAYE-----PFENIAIELPPNEILFSENNDMDNNN---------DGVDELNKKC- 205
Query: 108 PIISAENWKPATKT 121
W +K
Sbjct: 206 -----TFWDAISKL 214
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 6.4
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 15/49 (30%)
Query: 136 EPEHPLRA------------DLADEFLKE--RKKFMKNAEDYTKKHSEK 170
EPE +R D A + +++ R+K K+ E++ ++ SE+
Sbjct: 83 EPES-IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: d.20.1.3
Length = 152
Score = 25.8 bits (56), Expect = 7.0
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFK 91
D F + P +YP P+I +
Sbjct: 66 DVSDEKMAMFSLACILPFKYPAVLPEITVR 95
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 26.0 bits (57), Expect = 7.4
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 117 PATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKN 159
P T +Q + + ++ + + +++ER F K+
Sbjct: 217 PTLVTTLXVQCFSRYPDHMKQHDFFKSAMPEGYIQERTIFFKD 259
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 9.0
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 20/43 (46%)
Query: 87 KINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALI 129
K+ K+Y + SA PA I+A +
Sbjct: 24 KLQASLKLYADD------------SA----PAL----AIKATM 46
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 25.3 bits (56), Expect = 9.4
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 137 PEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170
PEHPL LA + + E++ +K +
Sbjct: 60 PEHPLVPVLACIGERLGNACYSDVENFVEKMKKM 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.424
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,697,169
Number of extensions: 147973
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 77
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)