RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12515
(174 letters)
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 93.3 bits (231), Expect = 2e-25
Identities = 42/111 (37%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
+ PY G F++E+ P +YP + PK+ F TKIYHPNID G++CL ++ NW PA +
Sbjct: 43 EQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK-TNWSPALQI 101
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRP 172
V+ ++ AL+ P P PL D+A++++K + A ++TK +++K+P
Sbjct: 102 RTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKKP 152
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 93.3 bits (231), Expect = 2e-25
Identities = 66/111 (59%), Positives = 79/111 (71%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
D PPY+ AF + I+FP EYPFKPP I F TKIYHPN+DE GQ+CLPIIS+ENWKP TKT
Sbjct: 40 DQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKT 99
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRP 172
QV++AL LVN P PLR DLAD + + F KNAE++T + RP
Sbjct: 100 CQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDRP 150
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 89.8 bits (222), Expect = 4e-24
Identities = 42/124 (33%), Positives = 74/124 (59%), Gaps = 5/124 (4%)
Query: 45 PWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQ 104
+ + P PY G F + I+FP +YPFKPPK+ F T+IYHPNI+ G
Sbjct: 28 DDLFHWQATIMGP----PESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGS 83
Query: 105 VCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYT 164
+CL I+ ++ W PA +V+ ++ +L+ DP P+ PL ++A + +R+++ + A ++T
Sbjct: 84 ICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWT 142
Query: 165 KKHS 168
+K++
Sbjct: 143 QKYA 146
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 89.8 bits (222), Expect = 4e-24
Identities = 92/108 (85%), Positives = 103/108 (95%)
Query: 60 FQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPAT 119
DNPPY+KGAF+IEINFPAEYPFKPPKI FKTKIYHPNIDEKGQVCLP+ISAENWKPAT
Sbjct: 37 VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPAT 96
Query: 120 KTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
KTDQVIQ+LIALVNDP+PEHPLRADLA+E+ K+RKKF KNAE++TKK+
Sbjct: 97 KTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 144
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 88.7 bits (219), Expect = 2e-23
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII----------- 110
+ Y G FK ++FP +YP KPPK+ F ++I+HPNID++G VC+ I+
Sbjct: 41 PDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYE 100
Query: 111 -SAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSE 169
E W P + ++ ++I+++ DP E P D A + +F K ++ E
Sbjct: 101 RPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE 160
Query: 170 K 170
+
Sbjct: 161 E 161
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 86.4 bits (213), Expect = 1e-22
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
Y G F ++I F +YPFKPPK+ F+T+IYH NI+ +G +CL I+ +NW PA
Sbjct: 42 PGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILK-DNWSPALTI 100
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+V+ ++ +L+ D P PL +A +++ R + + A +TK++
Sbjct: 101 SKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 146
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 86.0 bits (212), Expect = 1e-22
Identities = 40/107 (37%), Positives = 57/107 (53%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
PY G F ++I P EYPFKPPK+ F TK+YHPNI I W P
Sbjct: 42 PGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITL 101
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ +L AL+ PEP P A++A +L++R+ F K A +T+ ++
Sbjct: 102 KSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 83.2 bits (205), Expect = 2e-21
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
PY G +K+ ++ P +YPFK P I F KI+HPNIDE + + W
Sbjct: 39 QGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDL 98
Query: 122 DQVIQALIA-LVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170
+ ++ + L+ P P PL D A +L +++ + ++Y +K++ +
Sbjct: 99 TNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 148
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 82.5 bits (203), Expect = 3e-21
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
+ PY G F++ + F EYP KPP + F ++++HPN+ G++CL I+ W P
Sbjct: 43 ADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ-NRWTPTYDV 101
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEK 170
++ ++ +L NDP P P + A F + +++K ++ +K E
Sbjct: 102 ASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED 150
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 82.2 bits (202), Expect = 4e-21
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 45 PWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQ 104
P + PY G +++EI P YPF PPK+ F TKI+HPNI
Sbjct: 34 ENFTELRGEIAGP----PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 89
Query: 105 VCLPIISAENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYT 164
I + W A V+ +L AL+ EP+ P A +A+++ + + F + A +
Sbjct: 90 AICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWA 149
Query: 165 KKH 167
+
Sbjct: 150 HVY 152
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 82.2 bits (202), Expect = 6e-21
Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 12/160 (7%)
Query: 20 SNSRRKVAHPHFQCVTDLIFSLKFKPWVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPA 79
+++++ Q + D + P + + ++ + PY G F ++ FP
Sbjct: 2 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 61
Query: 80 EYPFKPPKINFKTKIYHPNIDEKGQVCLPIISA------------ENWKPATKTDQVIQA 127
+YP PPK+ F I HPNI G+VC+ I+ + E W P ++++ +
Sbjct: 62 DYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS 121
Query: 128 LIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+++++++P E D + R +F + + K
Sbjct: 122 VMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKS 161
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 81.8 bits (201), Expect = 7e-21
Identities = 39/115 (33%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 53 YYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISA 112
Y+ + + P+ G FK+E+ P EYP PK+ F TKIYHPN+D+ G++CL I+
Sbjct: 33 YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK- 91
Query: 113 ENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
+ W PA + V+ ++ AL++ P P+ PL D+A+++ + ++ A +T+ +
Sbjct: 92 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 146
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 80.9 bits (199), Expect = 2e-20
Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
D Y G F YP PPK+ +T +YHPNID +G VCL I+ E+WKP
Sbjct: 41 DEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-EDWKPVLTI 99
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHS 168
+ +I L L +P PE PL + A+ R+ F +N + +
Sbjct: 100 NSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY 146
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 80.2 bits (197), Expect = 3e-20
Identities = 33/108 (30%), Positives = 56/108 (51%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
PY G F ++I P +YP+ PPK+ F TKI+HPNI + I W PA
Sbjct: 54 LGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTI 113
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSE 169
+ ++ A++ DP P P A++A ++ F++ A+ +T+ ++
Sbjct: 114 RTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK 161
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 77.1 bits (189), Expect = 4e-19
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 61 QDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATK 120
+ PY G F++++ ++P PPK F TKI+HPN+ G++C+ ++ +W
Sbjct: 45 PEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK-RDWTAELG 103
Query: 121 TDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
V+ + L+ P PE L + L+ +++ A T+ H
Sbjct: 104 IRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH 150
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 76.8 bits (188), Expect = 6e-19
Identities = 46/113 (40%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE---NWKPA 118
N PY KG FK+E+ P YPF+PP+I F T IYHPNID G++CL ++ W+P+
Sbjct: 42 ANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPS 101
Query: 119 TKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKR 171
V+ ++ L+++P P+ PL AD++ EF + F+KNA +T+KH+ ++
Sbjct: 102 LNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK 154
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 76.7 bits (188), Expect = 6e-19
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
+ PY G + + + P++YPFK P I F +I HPN+DE+ + + W P +
Sbjct: 36 EGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQL 95
Query: 122 DQVIQALI-ALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKR 171
+ + + L+ P P PL A +R F ++ H+ +
Sbjct: 96 ENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATPQ 146
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 76.3 bits (187), Expect = 7e-19
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 53 YYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISA 112
+ + P+ G FK+ + F EYP KPP + F +K++HPN+ G +CL I+
Sbjct: 34 TWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ- 92
Query: 113 ENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKK 166
W P ++ ++ +L+++P P P + A + + R+++ K + ++
Sbjct: 93 NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 146
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 74.0 bits (181), Expect = 6e-18
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAE-NWKPATK 120
P+ G FK+ + F +YP PPK F+ ++HPN+ G V L I+ + +W+PA
Sbjct: 47 KGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAIT 106
Query: 121 TDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
Q++ + L+N+P + P +A+ + + R ++ K KK
Sbjct: 107 IKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 153
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 72.0 bits (176), Expect = 2e-17
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII----------- 110
+ Y G FK + FP +YP +PPK+ F T+I+HPN+D+ G VC+ I+
Sbjct: 40 PDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYE 99
Query: 111 -SAENWKPATKTDQVIQALIALVNDP 135
E W P + ++ ++I+++ DP
Sbjct: 100 KPEERWLPIHTVETIMISVISMLADP 125
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 68.6 bits (167), Expect = 7e-16
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
Y +K+ + FP+ YP+ P + F T YHPN+D +G + L I+ E W
Sbjct: 41 AGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILK-EKWSALYDV 99
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKH 167
++ ++ +L+ +P + PL A+ + K F K ++ K
Sbjct: 100 RTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQ 144
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 68.3 bits (166), Expect = 9e-16
Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 4/117 (3%)
Query: 53 YYFFPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISA 112
+ + + + PY G + ++ FP E+PFKPP I T + + + +
Sbjct: 32 EWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHP 91
Query: 113 ENWKPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSE 169
+ W PA ++ L++ + + P +++ + + K
Sbjct: 92 DTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDF----TKRQLAVQSLAFNLKDKV 144
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 68.2 bits (166), Expect = 1e-15
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 58 LEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLP--IISAENW 115
+E N + F++ I+F +EY + PP + F T +HPN+D + + E W
Sbjct: 40 IEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKW 99
Query: 116 KPATKTDQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDY 163
++ AL ++++P E+P+ + A +K+ + +
Sbjct: 100 NTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF 147
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 67.9 bits (165), Expect = 2e-15
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 121
+ Y +K+ + FP++YP+KPP + F T +HPN+D+ G +CL I+ ENW +
Sbjct: 49 KDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK-ENWTASYDV 107
Query: 122 DQVIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNA-EDYTKKHSEK 170
++ +L +L+ +P PL A AD + + ++ K E Y S+K
Sbjct: 108 RTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSDK 156
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 65.4 bits (159), Expect = 9e-15
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPII--SAENWKPAT 119
Y + ++I +YP PP + F TKI ++ V P W+ +
Sbjct: 49 PRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSY 108
Query: 120 KTDQVIQALIALVNDPE-PEHPLRAD 144
V+Q L L+ E + P +
Sbjct: 109 SIKVVLQELRRLMMSKENMKLPQPPE 134
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 65.1 bits (158), Expect = 1e-14
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 65 PYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEK-GQVCLPIISAENWKPATKTDQ 123
+ + + I+ YP PPK+ F +KI P ++ G+V + +WK A +
Sbjct: 51 NHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMET 110
Query: 124 VIQALIALVNDPEPE 138
++ L + P +
Sbjct: 111 LLLDLRKEMATPANK 125
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 63.9 bits (155), Expect = 4e-14
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 56 FPLEFQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTK-----------IYHPNIDEKGQ 104
+ P++ + + P+ YP KPP I+ + ID G
Sbjct: 62 ISTGEDGSSPHS---IPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGW 118
Query: 105 VCLPIISAENWKPATKTDQVIQALIALVNDPEP 137
+ LPI+ A V+Q L++L+++P
Sbjct: 119 IALPILH-CWDPAAMNLIMVVQELMSLLHEPPQ 150
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 63.1 bits (153), Expect = 7e-14
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 65 PYNKGAFKI--EINFPAEYPFKPPKINFKTK-----IYHPNIDEKGQVCLPIISAENWKP 117
PY + I + YP+ PP K ++D G++ LP + E P
Sbjct: 60 PYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLH-EWKHP 118
Query: 118 ATKTDQVIQALIALVNDPEP 137
+ +IQ +I + D P
Sbjct: 119 QSDLLGLIQVMIVVFGDEPP 138
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 61.6 bits (149), Expect = 2e-13
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTK--IYHPNIDEKGQVCLPIISAENWKPAT 119
Y F++ F + YPF P++ F + HP++ G +CL I++ E+W PA
Sbjct: 45 PGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT-EDWSPAL 103
Query: 120 KTDQVIQALIALVN 133
V ++I++++
Sbjct: 104 SVQSVCLSIISMLS 117
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 61.4 bits (148), Expect = 5e-13
Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 60 FQDNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIYHPNIDEKGQ-VCLPIISAENWKPA 118
+ +F +PF PP + + G +C+ +++ + W A
Sbjct: 57 QILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSA 116
Query: 119 TKTDQVIQALIALVNDPEPEHPLRADLADEFLKE-RKKFMKNAEDY 163
+ VI + A + + A+ L ++ + + +
Sbjct: 117 YSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIH 162
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 53.9 bits (129), Expect = 1e-10
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 62 DNPPYNKGAFKIEINFPAEYPFKPPKINFKTKIY-HPNIDEKGQVCLPIISAENWKPATK 120
+N Y +K++I FP +YP KPP + F K H ++ G +CL + +++ P+
Sbjct: 38 ENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSL-LGDDYNPSLS 96
Query: 121 TDQVIQALIALVN 133
++ ++I++++
Sbjct: 97 ISGLVLSIISMLS 109
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229
{Pseudomonas syringae [TaxId: 317]}
Length = 148
Score = 24.5 bits (53), Expect = 5.3
Identities = 10/65 (15%), Positives = 17/65 (26%)
Query: 76 NFPAEYPFKPPKINFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALIALVNDP 135
N+ A + + YH + E G + I + T D A
Sbjct: 30 NYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPDSHYHDAKATTE 89
Query: 136 EPEHP 140
+
Sbjct: 90 KNPWS 94
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 448
Score = 25.0 bits (54), Expect = 6.1
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 124 VIQALIALVNDPEPEHPLRADLADEFLKERKKFMKNAEDYTKKHSEKRPS 173
IQAL+ PE A EFL+ + N DY K + + R
Sbjct: 108 AIQALLEAGGHHRPEFSSCLQKAHEFLRLS-QVPDNPPDYQKYYRQMRKG 156
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 24.4 bits (53), Expect = 7.2
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 13/46 (28%)
Query: 71 FKIEINFPAEYPFKPPKINFKTKIYHPNIDEK-------GQVCLPI 109
F IE + P YP P+I P +D K G++CL
Sbjct: 78 FDIEFDIPITYPTTAPEIAV------PELDGKTAKMYRGGKICLTD 117
>d1n0ea_ b.129.1.2 (A:) Hypothetical protein MraZ {Mycoplasma
pneumoniae [TaxId: 2104]}
Length = 141
Score = 24.2 bits (52), Expect = 7.9
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 95 YHPNIDEKGQVCLP 108
++ +D K ++ LP
Sbjct: 10 FNITLDAKNRISLP 23
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 24.0 bits (52), Expect = 8.8
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 46 WVLSYFQYYFFPLEFQDNPPYNKGAFKIEINFPAEY 81
+ SYF +PL+F N G+ I P E
Sbjct: 80 TIASYFHSRNYPLKFPQLHCLNVGSSIKSILLPIEL 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.424
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 684,278
Number of extensions: 31945
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 46
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)