Query psy12516
Match_columns 327
No_of_seqs 236 out of 2147
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 21:17:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05692 hydroxymethylglutaryl 100.0 1.1E-50 2.4E-55 372.2 26.4 202 102-303 86-287 (287)
2 PLN02746 hydroxymethylglutaryl 100.0 5E-50 1.1E-54 373.4 27.7 207 103-309 129-335 (347)
3 TIGR02660 nifV_homocitr homoci 100.0 8.7E-50 1.9E-54 379.0 23.1 244 65-326 34-301 (365)
4 PRK11858 aksA trans-homoaconit 100.0 1.1E-49 2.3E-54 379.6 23.0 211 103-326 83-304 (378)
5 TIGR02090 LEU1_arch isopropylm 100.0 1.4E-48 3E-53 370.1 22.0 211 103-326 79-300 (363)
6 cd07938 DRE_TIM_HMGL 3-hydroxy 100.0 2.9E-47 6.2E-52 347.8 26.4 194 103-296 81-274 (274)
7 PRK00915 2-isopropylmalate syn 100.0 7.7E-48 1.7E-52 379.2 23.8 213 102-326 86-315 (513)
8 PLN03228 methylthioalkylmalate 100.0 1.7E-47 3.6E-52 371.7 23.7 211 104-326 177-407 (503)
9 PRK09389 (R)-citramalate synth 100.0 2.3E-46 5.1E-51 365.7 27.2 211 103-326 81-302 (488)
10 TIGR00973 leuA_bact 2-isopropy 100.0 2.4E-46 5.2E-51 366.5 27.3 211 104-326 85-312 (494)
11 PLN02321 2-isopropylmalate syn 100.0 2.9E-46 6.4E-51 370.6 27.3 206 109-326 183-408 (632)
12 PRK12344 putative alpha-isopro 100.0 3.5E-46 7.6E-51 367.3 24.9 211 103-326 93-319 (524)
13 COG0119 LeuA Isopropylmalate/h 100.0 1E-45 2.2E-50 351.7 26.3 212 103-326 84-309 (409)
14 TIGR00977 LeuA_rel 2-isopropyl 100.0 2.2E-45 4.7E-50 361.1 29.3 215 103-326 89-316 (526)
15 PRK03739 2-isopropylmalate syn 100.0 7.2E-44 1.6E-48 352.2 28.5 215 106-326 119-364 (552)
16 TIGR00970 leuA_yeast 2-isoprop 100.0 5.4E-44 1.2E-48 353.9 26.9 215 106-326 115-367 (564)
17 cd07945 DRE_TIM_CMS Leptospira 100.0 1.5E-42 3.3E-47 317.3 26.2 194 103-305 82-276 (280)
18 cd07939 DRE_TIM_NifV Streptomy 100.0 4.1E-42 8.8E-47 312.6 21.3 214 65-296 31-258 (259)
19 PRK14847 hypothetical protein; 100.0 1.3E-40 2.9E-45 306.7 26.3 194 103-308 118-330 (333)
20 PRK12330 oxaloacetate decarbox 100.0 6.6E-42 1.4E-46 331.0 17.1 250 13-299 3-278 (499)
21 cd07940 DRE_TIM_IPMS 2-isoprop 100.0 3.2E-40 6.8E-45 301.6 27.2 181 104-296 82-268 (268)
22 PRK12581 oxaloacetate decarbox 100.0 1.9E-41 4.1E-46 325.1 17.1 249 14-300 12-285 (468)
23 KOG2367|consensus 100.0 6.2E-40 1.3E-44 304.9 23.7 206 109-326 147-369 (560)
24 PRK14042 pyruvate carboxylase 100.0 6.2E-41 1.3E-45 331.2 17.9 249 13-299 2-275 (596)
25 PRK14041 oxaloacetate decarbox 100.0 6.6E-41 1.4E-45 323.4 17.2 247 15-299 3-274 (467)
26 PRK12331 oxaloacetate decarbox 100.0 1.4E-40 3.1E-45 320.6 17.5 247 14-298 3-274 (448)
27 cd07937 DRE_TIM_PC_TC_5S Pyruv 100.0 2E-40 4.4E-45 303.4 17.4 182 93-299 89-270 (275)
28 cd07948 DRE_TIM_HCS Saccharomy 100.0 1.4E-39 3E-44 295.0 21.7 189 90-296 71-262 (262)
29 PRK14040 oxaloacetate decarbox 100.0 2.3E-40 5E-45 328.6 17.3 248 13-298 3-275 (593)
30 KOG2368|consensus 100.0 1.9E-39 4.1E-44 276.2 16.4 212 103-314 101-312 (316)
31 cd07942 DRE_TIM_LeuA Mycobacte 100.0 2.6E-38 5.5E-43 288.8 24.7 181 110-296 94-284 (284)
32 cd07941 DRE_TIM_LeuA3 Desulfob 100.0 5.3E-38 1.1E-42 287.3 26.4 185 103-296 86-273 (273)
33 cd07947 DRE_TIM_Re_CS Clostrid 100.0 5.2E-38 1.1E-42 286.6 25.5 182 103-296 82-279 (279)
34 PRK09282 pyruvate carboxylase 100.0 2.8E-39 6.2E-44 321.5 16.9 264 13-314 2-295 (592)
35 COG5016 Pyruvate/oxaloacetate 100.0 3.7E-39 8.1E-44 295.3 16.0 248 13-298 4-276 (472)
36 TIGR01108 oadA oxaloacetate de 100.0 4.7E-39 1E-43 319.1 16.9 245 17-299 1-270 (582)
37 cd03174 DRE_TIM_metallolyase D 100.0 1.9E-37 4.2E-42 282.7 25.8 184 103-296 82-265 (265)
38 PF00682 HMGL-like: HMGL-like 100.0 1.3E-37 2.7E-42 279.7 22.0 163 103-277 75-237 (237)
39 TIGR03217 4OH_2_O_val_ald 4-hy 100.0 3.4E-37 7.5E-42 288.0 25.7 216 61-302 30-270 (333)
40 PRK08195 4-hyroxy-2-oxovalerat 100.0 8.3E-37 1.8E-41 286.1 25.8 210 65-301 36-270 (337)
41 cd07943 DRE_TIM_HOA 4-hydroxy- 100.0 2.3E-36 4.9E-41 275.5 26.1 168 103-296 93-260 (263)
42 TIGR01235 pyruv_carbox pyruvat 100.0 5.7E-38 1.2E-42 330.5 17.3 253 13-299 529-810 (1143)
43 cd07944 DRE_TIM_HOA_like 4-hyd 100.0 6.2E-36 1.3E-40 272.3 24.2 167 105-298 92-260 (266)
44 PRK12999 pyruvate carboxylase; 100.0 2.7E-37 5.7E-42 326.7 17.0 268 13-314 531-832 (1146)
45 TIGR02146 LysS_fung_arch homoc 100.0 1.8E-28 3.9E-33 231.9 24.9 211 103-326 77-298 (344)
46 COG1038 PycA Pyruvate carboxyl 99.9 4.1E-27 8.8E-32 230.4 15.6 255 13-299 534-815 (1149)
47 PLN02746 hydroxymethylglutaryl 99.9 3.3E-27 7.2E-32 220.4 14.1 114 2-115 201-314 (347)
48 PRK05692 hydroxymethylglutaryl 99.9 4E-27 8.6E-32 216.3 14.1 114 2-115 159-272 (287)
49 cd07938 DRE_TIM_HMGL 3-hydroxy 99.9 1.4E-26 3.1E-31 211.6 13.7 114 2-115 153-266 (274)
50 KOG0369|consensus 99.9 2.7E-26 5.9E-31 220.9 13.1 256 14-300 559-841 (1176)
51 PRK12331 oxaloacetate decarbox 99.9 4.1E-24 9E-29 206.5 20.1 199 2-236 158-358 (448)
52 PRK14041 oxaloacetate decarbox 99.9 3.7E-24 8E-29 207.1 16.4 197 1-236 156-354 (467)
53 PRK12330 oxaloacetate decarbox 99.9 6.9E-24 1.5E-28 205.8 17.3 196 1-236 158-358 (499)
54 PRK12581 oxaloacetate decarbox 99.9 1.8E-23 3.9E-28 201.2 19.6 199 1-236 166-367 (468)
55 PRK11858 aksA trans-homoaconit 99.9 5.3E-24 1.2E-28 203.1 10.0 157 2-174 149-309 (378)
56 cd07945 DRE_TIM_CMS Leptospira 99.9 2.6E-23 5.7E-28 190.4 13.5 108 2-115 151-259 (280)
57 PRK14042 pyruvate carboxylase 99.9 6.6E-23 1.4E-27 203.3 16.7 199 1-238 157-357 (596)
58 cd07939 DRE_TIM_NifV Streptomy 99.9 2.8E-23 6.2E-28 188.9 12.9 107 2-115 143-250 (259)
59 cd07943 DRE_TIM_HOA 4-hydroxy- 99.9 3E-23 6.6E-28 189.1 13.0 108 2-115 145-252 (263)
60 TIGR01108 oadA oxaloacetate de 99.9 6.5E-23 1.4E-27 204.0 16.5 196 1-238 152-352 (582)
61 TIGR02660 nifV_homocitr homoci 99.9 7.8E-24 1.7E-28 201.3 9.4 157 2-174 146-306 (365)
62 TIGR02090 LEU1_arch isopropylm 99.9 1.1E-23 2.5E-28 199.9 10.1 157 2-174 145-305 (363)
63 PLN03228 methylthioalkylmalate 99.9 3.3E-23 7.1E-28 202.0 13.1 158 2-174 243-412 (503)
64 PLN02321 2-isopropylmalate syn 99.9 4.5E-23 9.7E-28 205.5 13.9 158 2-174 244-413 (632)
65 cd07937 DRE_TIM_PC_TC_5S Pyruv 99.9 6.8E-23 1.5E-27 187.7 14.0 107 2-115 153-259 (275)
66 cd07940 DRE_TIM_IPMS 2-isoprop 99.9 4.5E-23 9.9E-28 188.5 12.5 108 2-115 147-260 (268)
67 cd07944 DRE_TIM_HOA_like 4-hyd 99.9 8.5E-23 1.8E-27 186.0 13.3 109 2-117 142-251 (266)
68 PRK08195 4-hyroxy-2-oxovalerat 99.9 7.7E-23 1.7E-27 191.9 13.1 113 2-120 148-261 (337)
69 PRK14040 oxaloacetate decarbox 99.9 2.6E-22 5.7E-27 199.9 16.9 227 2-274 159-391 (593)
70 PRK00915 2-isopropylmalate syn 99.9 2.5E-23 5.5E-28 205.4 9.6 146 2-159 153-308 (513)
71 TIGR03217 4OH_2_O_val_ald 4-hy 99.9 1E-22 2.3E-27 190.5 13.1 114 2-121 147-261 (333)
72 PRK09282 pyruvate carboxylase 99.9 7.1E-22 1.5E-26 197.2 18.7 195 1-235 157-354 (592)
73 PRK09389 (R)-citramalate synth 99.9 6.1E-23 1.3E-27 201.1 9.7 157 2-174 147-307 (488)
74 TIGR00973 leuA_bact 2-isopropy 99.9 7.7E-23 1.7E-27 200.8 9.7 158 2-174 150-317 (494)
75 COG0119 LeuA Isopropylmalate/h 99.9 2.8E-23 6E-28 198.2 6.0 196 2-212 150-357 (409)
76 PF00682 HMGL-like: HMGL-like 99.9 2E-22 4.3E-27 181.1 10.9 97 2-104 141-237 (237)
77 cd03174 DRE_TIM_metallolyase D 99.9 5.4E-22 1.2E-26 180.9 12.7 108 2-115 150-257 (265)
78 cd07941 DRE_TIM_LeuA3 Desulfob 99.9 5.8E-22 1.3E-26 181.5 12.6 106 2-113 155-263 (273)
79 TIGR00977 LeuA_rel 2-isopropyl 99.9 1.7E-22 3.6E-27 199.3 8.6 158 2-174 158-321 (526)
80 cd07948 DRE_TIM_HCS Saccharomy 99.9 1.1E-21 2.4E-26 178.1 12.6 106 2-114 145-253 (262)
81 cd07947 DRE_TIM_Re_CS Clostrid 99.9 1E-21 2.2E-26 179.5 12.3 107 3-115 150-271 (279)
82 PRK12344 putative alpha-isopro 99.9 4.6E-22 9.9E-27 196.5 9.8 157 2-174 162-324 (524)
83 KOG2368|consensus 99.9 5E-22 1.1E-26 169.8 7.8 116 2-117 173-288 (316)
84 COG5016 Pyruvate/oxaloacetate 99.9 5.2E-21 1.1E-25 176.3 14.0 212 1-253 159-377 (472)
85 PRK12999 pyruvate carboxylase; 99.9 4.3E-21 9.3E-26 203.9 15.4 196 1-235 694-891 (1146)
86 cd07942 DRE_TIM_LeuA Mycobacte 99.9 3.6E-21 7.8E-26 176.0 12.1 108 2-115 160-276 (284)
87 TIGR00970 leuA_yeast 2-isoprop 99.8 2.2E-21 4.7E-26 192.9 9.6 145 2-158 188-344 (564)
88 PRK03739 2-isopropylmalate syn 99.8 3.3E-21 7.2E-26 191.1 9.2 145 2-158 189-345 (552)
89 PRK14847 hypothetical protein; 99.8 2.1E-20 4.6E-25 172.9 13.0 97 11-113 206-305 (333)
90 TIGR01235 pyruv_carbox pyruvat 99.8 6.2E-20 1.4E-24 194.3 15.6 195 2-235 693-889 (1143)
91 KOG2367|consensus 99.7 1.6E-16 3.4E-21 149.1 11.1 98 1-104 207-307 (560)
92 COG1038 PycA Pyruvate carboxyl 99.5 6.7E-14 1.4E-18 138.4 10.3 173 1-215 697-873 (1149)
93 TIGR02146 LysS_fung_arch homoc 99.5 2.8E-13 6E-18 128.2 11.8 94 2-101 143-236 (344)
94 KOG0369|consensus 99.3 9.6E-12 2.1E-16 121.3 11.0 109 1-115 721-829 (1176)
95 TIGR03551 F420_cofH 7,8-dideme 98.0 0.00076 1.6E-08 64.0 19.4 225 2-280 77-335 (343)
96 TIGR03700 mena_SCO4494 putativ 97.8 0.0026 5.5E-08 60.6 19.0 137 135-280 187-341 (351)
97 PRK02227 hypothetical protein; 97.8 0.0015 3.3E-08 58.0 15.2 177 2-210 11-234 (238)
98 TIGR00423 radical SAM domain p 97.7 0.0048 1E-07 57.6 19.4 136 136-280 145-299 (309)
99 TIGR03699 mena_SCO4550 menaqui 97.7 0.0068 1.5E-07 57.4 19.3 133 135-280 180-330 (340)
100 PRK08444 hypothetical protein; 97.6 0.014 3E-07 55.6 20.3 227 2-280 87-340 (353)
101 PRK09196 fructose-1,6-bisphosp 97.6 0.012 2.6E-07 55.4 19.4 113 131-246 118-276 (347)
102 TIGR00433 bioB biotin syntheta 97.5 0.029 6.2E-07 51.8 21.5 130 135-278 157-296 (296)
103 PRK07360 FO synthase subunit 2 97.5 0.016 3.5E-07 55.6 19.6 134 137-280 202-357 (371)
104 PRK13399 fructose-1,6-bisphosp 97.4 0.032 6.9E-07 52.6 19.7 113 131-246 118-276 (347)
105 PRK07094 biotin synthase; Prov 97.4 0.031 6.7E-07 52.4 19.7 105 135-249 164-282 (323)
106 PRK08445 hypothetical protein; 97.4 0.019 4E-07 54.6 17.8 231 2-279 80-334 (348)
107 PRK07084 fructose-bisphosphate 97.2 0.027 5.8E-07 52.6 16.9 113 131-246 121-267 (321)
108 PRK09195 gatY tagatose-bisphos 97.2 0.042 9.2E-07 50.6 17.4 110 131-246 110-231 (284)
109 TIGR01521 FruBisAldo_II_B fruc 97.2 0.11 2.4E-06 49.0 20.2 113 130-246 115-274 (347)
110 cd00947 TBP_aldolase_IIB Tagat 97.1 0.061 1.3E-06 49.3 17.9 110 131-246 105-225 (276)
111 PRK12738 kbaY tagatose-bisphos 97.1 0.09 2E-06 48.5 18.9 110 131-246 110-231 (286)
112 PF04476 DUF556: Protein of un 97.1 0.03 6.4E-07 49.6 14.8 78 2-80 11-93 (235)
113 TIGR01858 tag_bisphos_ald clas 97.1 0.086 1.9E-06 48.5 18.3 110 131-246 108-229 (282)
114 PRK08508 biotin synthase; Prov 97.1 0.14 3.1E-06 47.0 20.1 130 135-280 136-274 (279)
115 PF01116 F_bP_aldolase: Fructo 97.0 0.068 1.5E-06 49.4 17.5 111 131-246 109-234 (287)
116 PRK05835 fructose-bisphosphate 97.0 0.12 2.5E-06 48.1 19.0 110 132-245 111-253 (307)
117 PRK12857 fructose-1,6-bisphosp 97.0 0.11 2.3E-06 48.0 18.3 111 130-246 109-231 (284)
118 PLN02389 biotin synthase 96.9 0.33 7.3E-06 46.6 22.0 132 135-281 212-355 (379)
119 PRK07315 fructose-bisphosphate 96.9 0.24 5.3E-06 45.9 19.9 109 132-246 113-231 (293)
120 PRK06256 biotin synthase; Vali 96.9 0.33 7.3E-06 45.7 21.2 127 135-280 186-324 (336)
121 PRK09234 fbiC FO synthase; Rev 96.9 0.1 2.2E-06 55.2 19.1 224 2-279 564-821 (843)
122 PRK07709 fructose-bisphosphate 96.8 0.22 4.8E-06 45.9 18.6 109 132-246 114-232 (285)
123 PTZ00170 D-ribulose-5-phosphat 96.8 0.12 2.6E-06 46.2 16.4 66 2-72 23-93 (228)
124 PRK06801 hypothetical protein; 96.7 0.39 8.5E-06 44.3 19.9 108 132-246 111-232 (286)
125 COG1060 ThiH Thiamine biosynth 96.7 0.14 3E-06 49.0 17.3 231 2-280 97-353 (370)
126 PRK12737 gatY tagatose-bisphos 96.7 0.22 4.8E-06 45.9 17.8 110 131-246 110-231 (284)
127 PLN02433 uroporphyrinogen deca 96.7 0.097 2.1E-06 49.7 15.9 147 2-186 183-340 (345)
128 PRK05927 hypothetical protein; 96.6 0.29 6.4E-06 46.5 18.8 232 2-280 83-336 (350)
129 PRK00115 hemE uroporphyrinogen 96.6 0.11 2.4E-06 49.3 15.5 145 2-184 190-345 (346)
130 PRK08185 hypothetical protein; 96.5 0.42 9.1E-06 44.0 18.5 110 130-246 103-227 (283)
131 PRK09197 fructose-bisphosphate 96.5 0.081 1.8E-06 49.9 13.9 170 29-246 80-278 (350)
132 PRK07028 bifunctional hexulose 96.4 0.57 1.2E-05 45.9 20.1 92 139-246 97-189 (430)
133 TIGR01859 fruc_bis_ald_ fructo 96.4 0.79 1.7E-05 42.3 20.7 110 131-246 110-229 (282)
134 PRK05926 hypothetical protein; 96.4 0.4 8.7E-06 46.0 18.1 133 136-279 207-361 (370)
135 PRK08610 fructose-bisphosphate 96.4 0.21 4.5E-06 46.1 15.5 109 131-245 113-231 (286)
136 TIGR01464 hemE uroporphyrinoge 96.2 0.24 5.2E-06 46.8 15.4 143 2-181 184-337 (338)
137 PRK07998 gatY putative fructos 96.2 0.24 5.3E-06 45.5 14.7 111 130-246 109-228 (283)
138 PRK15452 putative protease; Pr 96.1 0.077 1.7E-06 52.0 12.0 70 136-220 46-115 (443)
139 TIGR00167 cbbA ketose-bisphosp 96.0 0.41 8.9E-06 44.2 15.7 109 131-245 113-234 (288)
140 cd00959 DeoC 2-deoxyribose-5-p 96.0 0.67 1.4E-05 40.5 16.4 136 89-246 64-202 (203)
141 cd00717 URO-D Uroporphyrinogen 95.9 0.37 8E-06 45.4 15.2 143 2-181 181-334 (335)
142 PRK09240 thiH thiamine biosynt 95.8 0.86 1.9E-05 43.7 17.5 133 135-281 201-360 (371)
143 TIGR01769 GGGP geranylgeranylg 95.8 0.85 1.8E-05 40.0 15.8 70 167-244 130-202 (205)
144 cd00331 IGPS Indole-3-glycerol 95.8 1.1 2.4E-05 39.4 16.9 88 137-244 109-198 (217)
145 TIGR03128 RuMP_HxlA 3-hexulose 95.7 1.2 2.6E-05 38.6 18.1 89 139-246 92-185 (206)
146 COG0191 Fba Fructose/tagatose 95.7 0.56 1.2E-05 42.9 14.8 145 132-292 112-266 (286)
147 TIGR00126 deoC deoxyribose-pho 95.6 0.98 2.1E-05 39.8 15.8 189 22-247 13-204 (211)
148 TIGR00538 hemN oxygen-independ 95.6 1.3 2.9E-05 43.6 18.4 153 11-213 102-275 (455)
149 TIGR03849 arch_ComA phosphosul 95.6 0.067 1.5E-06 47.7 8.3 128 138-277 43-184 (237)
150 COG0826 Collagenase and relate 95.6 0.34 7.3E-06 46.0 13.4 74 136-224 49-122 (347)
151 PRK15108 biotin synthase; Prov 95.5 2.3 5E-05 40.4 20.8 130 135-280 170-312 (345)
152 TIGR02026 BchE magnesium-proto 95.5 0.64 1.4E-05 46.4 16.0 69 135-212 322-390 (497)
153 PRK13347 coproporphyrinogen II 95.5 1.5 3.4E-05 43.1 18.5 132 11-192 103-240 (453)
154 COG1891 Uncharacterized protei 95.4 0.2 4.3E-06 42.4 10.0 74 2-79 11-92 (235)
155 PRK06252 methylcobalamin:coenz 95.4 0.78 1.7E-05 43.2 15.6 146 2-185 184-338 (339)
156 PRK09613 thiH thiamine biosynt 95.4 2 4.4E-05 42.5 18.8 164 105-281 187-381 (469)
157 TIGR01303 IMP_DH_rel_1 IMP deh 95.3 0.15 3.2E-06 50.6 10.4 73 171-249 224-296 (475)
158 cd03465 URO-D_like The URO-D _ 95.3 0.87 1.9E-05 42.6 15.4 144 2-181 172-329 (330)
159 TIGR00539 hemN_rel putative ox 95.3 1.2 2.5E-05 42.6 16.4 129 12-190 52-186 (360)
160 PRK08446 coproporphyrinogen II 95.2 1.1 2.4E-05 42.6 15.9 130 11-190 51-184 (350)
161 PRK05660 HemN family oxidoredu 95.0 1.7 3.6E-05 41.8 16.5 130 10-189 57-192 (378)
162 PRK07379 coproporphyrinogen II 95.0 1 2.2E-05 43.6 15.1 130 11-190 66-201 (400)
163 PRK06843 inosine 5-monophospha 94.9 1.4 3E-05 42.7 15.7 68 2-75 156-223 (404)
164 PF01208 URO-D: Uroporphyrinog 94.9 0.82 1.8E-05 43.1 14.0 145 2-183 186-343 (343)
165 TIGR02351 thiH thiazole biosyn 94.8 3.7 8E-05 39.3 18.3 77 195-281 270-359 (366)
166 PLN02858 fructose-bisphosphate 94.8 1.1 2.3E-05 50.3 16.4 111 130-245 1204-1329(1378)
167 TIGR03550 F420_cofG 7,8-dideme 94.7 3.9 8.4E-05 38.4 18.7 131 137-280 150-297 (322)
168 COG0159 TrpA Tryptophan syntha 94.6 1 2.2E-05 40.9 12.9 167 2-239 35-223 (265)
169 PRK09249 coproporphyrinogen II 94.5 4.8 0.0001 39.6 18.8 133 10-192 101-239 (453)
170 cd00952 CHBPH_aldolase Trans-o 94.5 1.1 2.5E-05 41.7 13.6 82 166-247 24-110 (309)
171 cd03307 Mta_CmuA_like MtaA_Cmu 94.5 1.5 3.2E-05 41.2 14.5 142 2-181 175-325 (326)
172 TIGR01463 mtaA_cmuA methyltran 94.4 1.8 3.8E-05 40.8 15.1 145 2-184 184-339 (340)
173 cd00951 KDGDH 5-dehydro-4-deox 94.4 1.5 3.2E-05 40.5 14.0 81 166-246 16-100 (289)
174 cd00959 DeoC 2-deoxyribose-5-p 94.4 3 6.4E-05 36.4 15.2 114 146-274 49-169 (203)
175 PRK08883 ribulose-phosphate 3- 94.3 3.5 7.6E-05 36.5 16.9 166 3-246 17-194 (220)
176 TIGR03470 HpnH hopanoid biosyn 94.3 1.5 3.2E-05 41.1 14.0 73 134-212 147-228 (318)
177 PRK05628 coproporphyrinogen II 94.3 2.7 5.9E-05 40.2 16.1 129 12-190 60-194 (375)
178 CHL00200 trpA tryptophan synth 94.2 2.2 4.8E-05 38.9 14.6 113 102-245 113-229 (263)
179 PRK00507 deoxyribose-phosphate 94.2 3.8 8.3E-05 36.3 16.1 187 22-247 17-208 (221)
180 TIGR01303 IMP_DH_rel_1 IMP deh 94.1 0.24 5.1E-06 49.1 8.6 69 2-76 228-296 (475)
181 PLN02591 tryptophan synthase 94.1 3.4 7.4E-05 37.4 15.3 112 102-244 100-215 (250)
182 TIGR00510 lipA lipoate synthas 94.1 2.8 6E-05 39.1 15.1 51 135-191 190-242 (302)
183 PRK08005 epimerase; Validated 94.0 4 8.7E-05 35.9 16.6 92 138-246 95-190 (210)
184 COG0821 gcpE 1-hydroxy-2-methy 94.0 4.2 9.1E-05 38.0 15.7 68 2-79 40-107 (361)
185 cd03309 CmuC_like CmuC_like. P 93.9 3.1 6.7E-05 39.1 15.4 143 2-178 159-317 (321)
186 PTZ00314 inosine-5'-monophosph 93.8 2.5 5.5E-05 42.2 15.3 69 2-76 244-312 (495)
187 PRK05904 coproporphyrinogen II 93.8 4 8.6E-05 38.9 16.0 127 12-188 57-187 (353)
188 PRK06806 fructose-bisphosphate 93.8 5.5 0.00012 36.7 21.0 108 132-246 111-229 (281)
189 TIGR00683 nanA N-acetylneurami 93.7 2.1 4.5E-05 39.6 13.6 82 165-246 15-102 (290)
190 cd00945 Aldolase_Class_I Class 93.7 3.9 8.4E-05 34.7 18.0 97 132-244 97-198 (201)
191 cd04740 DHOD_1B_like Dihydroor 93.7 1.8 4E-05 39.9 13.3 77 168-246 99-185 (296)
192 PRK00366 ispG 4-hydroxy-3-meth 93.7 6 0.00013 37.4 16.4 127 2-151 46-175 (360)
193 PRK08599 coproporphyrinogen II 93.7 3.5 7.6E-05 39.5 15.6 130 11-190 51-186 (377)
194 PRK13125 trpA tryptophan synth 93.6 1.5 3.2E-05 39.5 12.1 93 136-244 116-211 (244)
195 PRK06843 inosine 5-monophospha 93.5 0.96 2.1E-05 43.8 11.3 72 173-253 154-225 (404)
196 TIGR00262 trpA tryptophan synt 93.5 3 6.5E-05 37.8 14.0 97 134-245 125-225 (256)
197 PRK08898 coproporphyrinogen II 93.5 3.1 6.7E-05 40.2 14.9 128 12-189 74-206 (394)
198 PRK09358 adenosine deaminase; 93.3 5.7 0.00012 37.4 16.3 194 36-244 6-223 (340)
199 COG2089 SpsE Sialic acid synth 93.3 2.2 4.9E-05 39.7 12.7 95 138-245 136-233 (347)
200 TIGR03471 HpnJ hopanoid biosyn 93.2 5.3 0.00011 39.6 16.4 68 135-211 322-389 (472)
201 PRK13361 molybdenum cofactor b 93.1 5 0.00011 37.7 15.4 94 2-101 52-147 (329)
202 PRK07259 dihydroorotate dehydr 93.1 2.4 5.1E-05 39.3 13.0 78 168-246 101-188 (301)
203 PRK08207 coproporphyrinogen II 93.0 5.9 0.00013 39.5 16.3 52 135-191 304-356 (488)
204 cd00946 FBP_aldolase_IIA Class 92.9 1.7 3.7E-05 41.1 11.8 115 130-246 135-274 (345)
205 TIGR03551 F420_cofH 7,8-dideme 92.9 1 2.3E-05 42.6 10.6 79 167-245 69-156 (343)
206 PF04131 NanE: Putative N-acet 92.8 1.9 4.1E-05 37.1 10.9 113 149-277 32-144 (192)
207 cd00453 FTBP_aldolase_II Fruct 92.8 6.1 0.00013 37.2 15.1 171 27-245 71-270 (340)
208 PRK03620 5-dehydro-4-deoxygluc 92.7 2.4 5.2E-05 39.4 12.5 82 165-246 22-107 (303)
209 PLN02417 dihydrodipicolinate s 92.7 2.3 4.9E-05 39.1 12.2 100 166-275 17-121 (280)
210 TIGR01859 fruc_bis_ald_ fructo 92.7 5.6 0.00012 36.7 14.7 96 138-245 4-102 (282)
211 cd00377 ICL_PEPM Members of th 92.7 7.3 0.00016 35.0 19.6 190 4-246 22-225 (243)
212 cd04726 KGPDC_HPS 3-Keto-L-gul 92.6 6.1 0.00013 34.0 16.3 88 138-245 92-184 (202)
213 PRK08745 ribulose-phosphate 3- 92.6 7 0.00015 34.7 16.9 96 138-246 99-198 (223)
214 PRK12928 lipoyl synthase; Prov 92.6 6.5 0.00014 36.4 15.1 50 135-190 187-238 (290)
215 PF01791 DeoC: DeoC/LacD famil 92.6 3.1 6.6E-05 37.1 12.6 110 133-245 109-226 (236)
216 COG0036 Rpe Pentose-5-phosphat 92.4 7.3 0.00016 34.4 17.8 96 138-247 98-198 (220)
217 PRK03170 dihydrodipicolinate s 92.4 2.5 5.4E-05 39.0 12.2 83 166-248 17-104 (292)
218 TIGR01302 IMP_dehydrog inosine 92.4 5.1 0.00011 39.5 15.0 67 2-75 227-294 (450)
219 TIGR00735 hisF imidazoleglycer 92.4 8.1 0.00017 34.9 20.6 96 169-280 153-253 (254)
220 cd04724 Tryptophan_synthase_al 92.4 7.9 0.00017 34.7 15.9 92 136-243 116-211 (242)
221 COG0502 BioB Biotin synthase a 92.4 9.9 0.00022 35.9 17.2 159 105-282 151-321 (335)
222 PRK09058 coproporphyrinogen II 92.4 5.1 0.00011 39.5 14.9 129 11-189 114-248 (449)
223 TIGR00674 dapA dihydrodipicoli 92.4 2.6 5.7E-05 38.7 12.2 83 166-248 14-101 (285)
224 TIGR00126 deoC deoxyribose-pho 92.4 7.4 0.00016 34.3 17.5 113 147-274 51-170 (211)
225 PRK08208 coproporphyrinogen II 92.3 6.7 0.00014 38.4 15.6 53 135-192 176-229 (430)
226 cd02810 DHOD_DHPD_FMN Dihydroo 92.3 4.9 0.00011 36.9 14.0 79 168-247 108-196 (289)
227 PRK07565 dihydroorotate dehydr 92.2 3.6 7.8E-05 38.8 13.2 79 168-247 111-197 (334)
228 PRK09057 coproporphyrinogen II 92.2 6 0.00013 38.0 14.9 131 11-191 55-190 (380)
229 PRK13209 L-xylulose 5-phosphat 92.2 8.9 0.00019 34.9 16.7 219 43-281 8-249 (283)
230 PF01645 Glu_synthase: Conserv 92.1 3 6.6E-05 39.9 12.4 77 9-94 170-246 (368)
231 PF03932 CutC: CutC family; I 92.1 7.6 0.00017 33.9 15.1 169 4-247 13-199 (201)
232 PRK00311 panB 3-methyl-2-oxobu 92.0 9 0.00019 35.0 14.9 156 4-220 28-202 (264)
233 COG0407 HemE Uroporphyrinogen- 92.0 4.5 9.9E-05 38.4 13.4 147 2-185 193-350 (352)
234 TIGR03249 KdgD 5-dehydro-4-deo 92.0 1.4 3E-05 40.8 9.9 80 166-245 21-104 (296)
235 COG0274 DeoC Deoxyribose-phosp 91.9 8.4 0.00018 34.1 14.0 184 22-244 19-209 (228)
236 TIGR00343 pyridoxal 5'-phospha 91.8 1.6 3.5E-05 39.9 9.8 65 174-249 79-143 (287)
237 PTZ00170 D-ribulose-5-phosphat 91.8 1 2.3E-05 40.1 8.5 100 168-281 16-118 (228)
238 cd00954 NAL N-Acetylneuraminic 91.8 3.5 7.6E-05 38.0 12.4 15 261-275 207-221 (288)
239 cd04739 DHOD_like Dihydroorota 91.7 5 0.00011 37.7 13.5 78 168-246 109-194 (325)
240 PLN02424 ketopantoate hydroxym 91.7 11 0.00023 35.5 15.2 39 3-41 47-95 (332)
241 PF02679 ComA: (2R)-phospho-3- 91.7 0.74 1.6E-05 41.4 7.4 129 137-277 55-196 (244)
242 PLN02428 lipoic acid synthase 91.7 11 0.00023 36.0 15.5 51 135-191 230-282 (349)
243 cd00958 DhnA Class I fructose- 91.6 9.2 0.0002 33.9 19.5 107 132-247 105-214 (235)
244 PRK05481 lipoyl synthase; Prov 91.6 11 0.00024 34.8 16.8 50 135-190 179-230 (289)
245 PRK09856 fructoselysine 3-epim 91.6 10 0.00022 34.3 16.8 25 261-285 223-247 (275)
246 PRK05799 coproporphyrinogen II 91.5 8.4 0.00018 36.8 15.1 51 135-190 134-185 (374)
247 TIGR00284 dihydropteroate synt 91.5 16 0.00035 36.5 20.8 65 2-72 169-233 (499)
248 PF04551 GcpE: GcpE protein; 91.4 13 0.00028 35.2 15.5 133 2-151 35-175 (359)
249 KOG3111|consensus 91.4 1.7 3.6E-05 37.5 8.7 113 136-275 99-215 (224)
250 PRK08508 biotin synthase; Prov 91.4 1.7 3.7E-05 39.9 9.7 135 129-279 40-181 (279)
251 COG2513 PrpB PEP phosphonomuta 91.2 12 0.00026 34.4 16.8 212 4-277 31-256 (289)
252 cd04727 pdxS PdxS is a subunit 91.1 0.77 1.7E-05 42.0 6.9 66 174-250 77-142 (283)
253 TIGR00612 ispG_gcpE 1-hydroxy- 91.0 14 0.0003 34.8 16.2 126 2-151 38-166 (346)
254 TIGR02313 HpaI-NOT-DapA 2,4-di 91.0 1.8 4E-05 40.0 9.7 81 166-246 16-101 (294)
255 cd00950 DHDPS Dihydrodipicolin 91.0 4.1 8.8E-05 37.3 11.9 82 166-247 16-102 (284)
256 PF04131 NanE: Putative N-acet 90.9 1.2 2.6E-05 38.3 7.6 71 2-80 55-125 (192)
257 PRK07535 methyltetrahydrofolat 90.9 12 0.00027 34.0 19.4 65 2-72 29-96 (261)
258 PRK04147 N-acetylneuraminate l 90.9 1.9 4.1E-05 39.9 9.6 82 166-247 19-106 (293)
259 cd00954 NAL N-Acetylneuraminic 90.9 4.7 0.0001 37.1 12.2 81 166-246 16-102 (288)
260 PF00701 DHDPS: Dihydrodipicol 90.9 6.4 0.00014 36.2 13.2 118 89-223 17-135 (289)
261 TIGR02666 moaA molybdenum cofa 90.7 15 0.00032 34.5 15.7 93 3-100 51-145 (334)
262 PRK11572 copper homeostasis pr 90.7 12 0.00027 33.7 15.9 182 3-250 13-201 (248)
263 COG0635 HemN Coproporphyrinoge 90.6 7.7 0.00017 37.9 13.9 130 12-190 88-223 (416)
264 TIGR03128 RuMP_HxlA 3-hexulose 90.5 3 6.6E-05 36.1 10.1 100 167-283 8-108 (206)
265 PRK09722 allulose-6-phosphate 90.5 11 0.00024 33.6 13.7 155 3-191 20-197 (229)
266 cd00952 CHBPH_aldolase Trans-o 90.4 7.5 0.00016 36.3 13.2 32 88-120 23-54 (309)
267 COG0191 Fba Fructose/tagatose 90.4 2.5 5.4E-05 38.8 9.6 120 138-278 6-130 (286)
268 cd04727 pdxS PdxS is a subunit 90.4 14 0.00031 33.9 15.5 67 2-79 78-144 (283)
269 COG2100 Predicted Fe-S oxidore 90.3 7.9 0.00017 36.2 12.7 126 155-301 118-257 (414)
270 TIGR03700 mena_SCO4494 putativ 90.3 4.2 9.1E-05 38.7 11.6 79 167-245 78-165 (351)
271 cd00408 DHDPS-like Dihydrodipi 90.3 2.9 6.3E-05 38.2 10.2 82 166-247 13-99 (281)
272 COG0329 DapA Dihydrodipicolina 90.3 2.2 4.7E-05 39.7 9.4 81 166-246 20-105 (299)
273 TIGR02320 PEP_mutase phosphoen 90.3 15 0.00032 33.9 14.9 82 164-246 86-188 (285)
274 PRK07094 biotin synthase; Prov 90.2 3.3 7.2E-05 38.7 10.8 79 168-251 70-150 (323)
275 PF01645 Glu_synthase: Conserv 90.2 3 6.4E-05 39.9 10.3 87 166-253 152-242 (368)
276 PRK07226 fructose-bisphosphate 90.1 11 0.00024 34.3 13.9 146 103-275 101-249 (267)
277 PRK14340 (dimethylallyl)adenos 90.1 10 0.00022 37.4 14.4 85 94-189 245-333 (445)
278 cd06557 KPHMT-like Ketopantoat 90.0 15 0.00032 33.4 14.7 156 4-220 25-199 (254)
279 TIGR01290 nifB nitrogenase cof 90.0 21 0.00045 35.1 18.0 50 135-190 173-222 (442)
280 PLN02334 ribulose-phosphate 3- 89.9 14 0.00029 32.8 19.1 92 139-246 105-201 (229)
281 cd04731 HisF The cyclase subun 89.9 14 0.0003 32.9 17.0 92 170-275 148-242 (243)
282 PRK01060 endonuclease IV; Prov 89.8 15 0.00033 33.3 19.6 215 44-279 3-252 (281)
283 PRK07807 inosine 5-monophospha 89.7 15 0.00033 36.5 15.3 68 2-76 230-298 (479)
284 TIGR00343 pyridoxal 5'-phospha 89.7 4.8 0.0001 36.9 10.8 64 3-77 81-144 (287)
285 PRK06801 hypothetical protein; 89.7 16 0.00034 33.8 14.4 95 137-244 5-101 (286)
286 PRK07360 FO synthase subunit 2 89.6 3.4 7.4E-05 39.6 10.5 77 167-245 90-178 (371)
287 TIGR02320 PEP_mutase phosphoen 89.6 17 0.00037 33.6 21.2 98 168-278 166-263 (285)
288 PF00701 DHDPS: Dihydrodipicol 89.6 11 0.00024 34.6 13.5 100 166-275 17-121 (289)
289 COG2513 PrpB PEP phosphonomuta 89.6 11 0.00023 34.7 12.9 118 135-276 67-201 (289)
290 PF01702 TGT: Queuine tRNA-rib 89.5 11 0.00024 33.6 13.1 77 168-249 65-143 (238)
291 COG3010 NanE Putative N-acetyl 89.5 9.8 0.00021 33.3 11.9 72 1-80 88-160 (229)
292 TIGR02109 PQQ_syn_pqqE coenzym 89.5 12 0.00025 35.5 14.0 50 134-190 130-179 (358)
293 PRK06582 coproporphyrinogen II 89.4 16 0.00035 35.3 15.0 130 11-190 62-196 (390)
294 PRK05567 inosine 5'-monophosph 89.1 3.4 7.5E-05 41.1 10.4 68 2-76 231-299 (486)
295 PRK06267 hypothetical protein; 89.1 21 0.00045 33.9 19.8 123 135-272 152-286 (350)
296 TIGR01302 IMP_dehydrog inosine 89.1 4.1 9E-05 40.1 10.8 71 172-248 224-294 (450)
297 PRK05301 pyrroloquinoline quin 88.9 22 0.00048 34.0 16.8 50 135-191 140-189 (378)
298 PRK13533 7-cyano-7-deazaguanin 88.9 9.8 0.00021 37.9 13.2 80 166-250 166-250 (487)
299 COG0274 DeoC Deoxyribose-phosp 88.7 11 0.00025 33.3 12.0 112 160-282 67-186 (228)
300 TIGR03586 PseI pseudaminic aci 88.7 4.1 8.9E-05 38.4 10.0 94 139-246 124-221 (327)
301 PRK00366 ispG 4-hydroxy-3-meth 88.6 4.1 8.8E-05 38.5 9.7 110 168-303 39-155 (360)
302 cd00377 ICL_PEPM Members of th 88.5 8.5 0.00019 34.6 11.7 79 168-246 81-179 (243)
303 cd00019 AP2Ec AP endonuclease 88.5 19 0.00041 32.7 20.4 139 133-295 120-277 (279)
304 PRK12737 gatY tagatose-bisphos 88.5 7.4 0.00016 35.9 11.4 101 137-250 5-109 (284)
305 PF02548 Pantoate_transf: Keto 88.4 19 0.00041 32.8 13.6 148 3-208 28-194 (261)
306 TIGR02990 ectoine_eutA ectoine 88.3 15 0.00032 33.0 13.0 89 107-218 118-209 (239)
307 TIGR01496 DHPS dihydropteroate 88.2 6.6 0.00014 35.6 10.8 77 164-246 15-101 (257)
308 PRK05096 guanosine 5'-monophos 88.1 7 0.00015 36.8 10.9 44 135-192 199-243 (346)
309 TIGR01520 FruBisAldo_II_A fruc 88.1 25 0.00053 33.5 19.1 115 129-246 146-286 (357)
310 PTZ00314 inosine-5'-monophosph 88.1 6.1 0.00013 39.5 11.3 70 174-249 243-312 (495)
311 PRK14338 (dimethylallyl)adenos 88.0 18 0.00039 35.8 14.6 50 135-189 289-340 (459)
312 PRK06806 fructose-bisphosphate 88.0 22 0.00047 32.8 14.6 109 137-271 5-115 (281)
313 COG1242 Predicted Fe-S oxidore 88.0 11 0.00023 34.6 11.6 139 26-190 66-217 (312)
314 cd02810 DHOD_DHPD_FMN Dihydroo 87.9 21 0.00046 32.6 18.7 27 168-194 173-199 (289)
315 TIGR02666 moaA molybdenum cofa 87.9 17 0.00037 34.0 13.9 76 136-223 46-123 (334)
316 PRK08185 hypothetical protein; 87.8 17 0.00037 33.5 13.3 98 139-249 2-102 (283)
317 cd00465 URO-D_CIMS_like The UR 87.6 23 0.00049 32.6 15.1 142 2-180 148-304 (306)
318 PRK14334 (dimethylallyl)adenos 87.6 18 0.00039 35.5 14.3 88 93-189 233-322 (440)
319 TIGR01521 FruBisAldo_II_B fruc 87.6 9.1 0.0002 36.3 11.5 100 138-249 4-107 (347)
320 PRK05835 fructose-bisphosphate 87.5 13 0.00029 34.6 12.4 100 138-249 5-108 (307)
321 TIGR01093 aroD 3-dehydroquinat 87.4 20 0.00043 31.7 19.1 120 137-272 106-227 (228)
322 cd00381 IMPDH IMPDH: The catal 87.4 10 0.00022 35.7 11.9 71 172-248 94-164 (325)
323 PF00478 IMPDH: IMP dehydrogen 87.2 6.5 0.00014 37.4 10.4 212 2-291 111-336 (352)
324 PRK13111 trpA tryptophan synth 87.2 23 0.0005 32.2 13.8 90 102-220 111-205 (258)
325 PRK11320 prpB 2-methylisocitra 87.2 25 0.00054 32.6 19.1 197 17-278 55-257 (292)
326 PRK05718 keto-hydroxyglutarate 87.2 4 8.7E-05 36.0 8.4 70 168-246 24-93 (212)
327 TIGR01304 IMP_DH_rel_2 IMP deh 87.1 8 0.00017 37.1 11.0 90 135-245 118-214 (369)
328 PRK12738 kbaY tagatose-bisphos 87.1 14 0.00029 34.2 12.2 100 137-249 5-108 (286)
329 PRK04180 pyridoxal biosynthesi 87.1 14 0.00029 34.1 11.9 62 2-74 87-148 (293)
330 PRK09234 fbiC FO synthase; Rev 87.0 7.5 0.00016 41.4 11.8 76 166-245 555-643 (843)
331 TIGR00683 nanA N-acetylneurami 87.0 12 0.00026 34.5 12.0 40 137-181 84-123 (290)
332 PRK05458 guanosine 5'-monophos 86.8 10 0.00022 35.8 11.3 92 141-249 77-170 (326)
333 PRK00507 deoxyribose-phosphate 86.7 22 0.00048 31.5 14.3 117 146-277 54-177 (221)
334 COG3010 NanE Putative N-acetyl 86.6 9.3 0.0002 33.4 10.0 125 92-253 30-160 (229)
335 PRK06294 coproporphyrinogen II 86.5 31 0.00067 33.0 15.5 128 12-190 59-189 (370)
336 PRK02083 imidazole glycerol ph 86.4 24 0.00052 31.7 18.5 94 172-281 154-252 (253)
337 PRK05567 inosine 5'-monophosph 86.3 7.1 0.00015 38.9 10.7 69 174-248 230-298 (486)
338 cd00408 DHDPS-like Dihydrodipi 86.2 16 0.00035 33.2 12.4 51 169-220 77-128 (281)
339 PRK13399 fructose-1,6-bisphosp 86.1 11 0.00025 35.7 11.3 101 137-249 5-109 (347)
340 TIGR00089 RNA modification enz 86.0 20 0.00043 35.0 13.5 88 93-190 235-325 (429)
341 PRK12677 xylose isomerase; Pro 86.0 34 0.00074 33.0 15.7 102 57-158 69-179 (384)
342 PF00834 Ribul_P_3_epim: Ribul 86.0 10 0.00022 33.1 10.3 159 2-190 16-193 (201)
343 PRK14329 (dimethylallyl)adenos 85.8 33 0.00072 34.0 15.1 85 94-189 270-358 (467)
344 PRK08444 hypothetical protein; 85.7 3.2 7E-05 39.5 7.6 112 166-281 78-206 (353)
345 PRK09196 fructose-1,6-bisphosp 85.6 14 0.00031 35.0 11.7 101 137-249 5-109 (347)
346 PF03102 NeuB: NeuB family; I 85.6 5.1 0.00011 36.0 8.4 99 138-249 102-205 (241)
347 PRK08091 ribulose-phosphate 3- 85.5 26 0.00057 31.2 17.0 178 2-213 29-227 (228)
348 cd01299 Met_dep_hydrolase_A Me 85.4 9.5 0.00021 35.6 10.7 90 168-279 117-217 (342)
349 cd00947 TBP_aldolase_IIB Tagat 85.4 16 0.00036 33.5 11.8 98 139-249 2-103 (276)
350 TIGR00674 dapA dihydrodipicoli 85.2 16 0.00035 33.5 11.9 45 169-213 78-123 (285)
351 PRK14456 ribosomal RNA large s 85.1 21 0.00045 34.3 12.8 162 10-187 172-345 (368)
352 TIGR03569 NeuB_NnaB N-acetylne 85.1 6.5 0.00014 37.1 9.2 95 139-246 123-222 (329)
353 PF00290 Trp_syntA: Tryptophan 85.0 14 0.00029 33.7 10.9 88 138-244 129-223 (259)
354 TIGR03849 arch_ComA phosphosul 85.0 10 0.00022 34.0 9.9 52 136-188 100-151 (237)
355 cd00452 KDPG_aldolase KDPG and 84.9 24 0.00052 30.2 16.5 151 2-246 20-170 (190)
356 PRK13361 molybdenum cofactor b 84.8 24 0.00051 33.1 13.0 22 169-190 46-67 (329)
357 PRK12857 fructose-1,6-bisphosp 84.8 16 0.00035 33.7 11.5 100 137-249 5-108 (284)
358 PRK00164 moaA molybdenum cofac 84.8 34 0.00074 32.0 15.5 94 3-101 57-151 (331)
359 PLN02591 tryptophan synthase 84.6 31 0.00066 31.2 14.8 164 88-275 10-186 (250)
360 cd01320 ADA Adenosine deaminas 84.5 34 0.00074 31.7 15.1 107 127-243 102-213 (325)
361 TIGR01579 MiaB-like-C MiaB-lik 84.5 33 0.00071 33.3 14.2 50 135-189 272-323 (414)
362 TIGR01858 tag_bisphos_ald clas 84.5 21 0.00045 32.9 12.1 99 138-249 4-106 (282)
363 TIGR01928 menC_lowGC/arch o-su 84.4 36 0.00077 31.9 16.5 65 165-236 230-295 (324)
364 cd00381 IMPDH IMPDH: The catal 84.4 14 0.00031 34.7 11.3 69 2-76 97-165 (325)
365 PRK03170 dihydrodipicolinate s 84.3 16 0.00034 33.7 11.4 31 89-120 17-47 (292)
366 PRK09195 gatY tagatose-bisphos 84.3 21 0.00045 33.0 11.9 100 137-249 5-108 (284)
367 PF02662 FlpD: Methyl-viologen 84.2 8.9 0.00019 30.7 8.5 82 30-114 15-96 (124)
368 cd00452 KDPG_aldolase KDPG and 84.2 22 0.00047 30.5 11.6 69 168-246 13-82 (190)
369 PF13714 PEP_mutase: Phosphoen 84.1 31 0.00068 30.9 20.1 181 4-245 22-217 (238)
370 PRK04180 pyridoxal biosynthesi 84.1 3 6.6E-05 38.3 6.3 63 174-247 86-148 (293)
371 PRK07807 inosine 5-monophospha 84.1 11 0.00024 37.5 10.7 73 171-249 226-298 (479)
372 PRK14024 phosphoribosyl isomer 84.0 31 0.00067 30.8 16.2 91 171-273 146-239 (241)
373 cd02803 OYE_like_FMN_family Ol 83.9 32 0.00069 32.0 13.5 137 103-245 149-309 (327)
374 cd04732 HisA HisA. Phosphorib 83.9 29 0.00064 30.5 14.1 68 171-244 146-216 (234)
375 PRK14332 (dimethylallyl)adenos 83.8 43 0.00094 33.0 14.8 85 93-188 247-335 (449)
376 TIGR02317 prpB methylisocitrat 83.8 21 0.00046 32.9 11.8 78 168-245 85-179 (285)
377 PRK00112 tgt queuine tRNA-ribo 83.8 40 0.00086 32.3 14.1 80 166-250 190-271 (366)
378 TIGR00736 nifR3_rel_arch TIM-b 83.8 26 0.00056 31.3 12.0 101 135-247 120-220 (231)
379 cd06556 ICL_KPHMT Members of t 83.7 20 0.00042 32.3 11.3 53 163-223 81-133 (240)
380 PRK14325 (dimethylallyl)adenos 83.7 46 0.001 32.6 16.6 87 93-189 245-334 (444)
381 cd00331 IGPS Indole-3-glycerol 83.6 11 0.00023 33.0 9.6 71 168-246 28-100 (217)
382 cd04728 ThiG Thiazole synthase 83.6 32 0.0007 31.0 12.4 91 135-244 106-201 (248)
383 smart00518 AP2Ec AP endonuclea 83.6 33 0.00072 30.9 17.0 138 133-279 81-248 (273)
384 smart00729 Elp3 Elongator prot 83.6 25 0.00055 29.5 15.8 54 135-193 135-189 (216)
385 PLN02951 Molybderin biosynthes 83.4 28 0.00062 33.4 13.1 28 173-201 123-151 (373)
386 PRK00208 thiG thiazole synthas 83.4 29 0.00063 31.3 12.1 90 135-244 106-201 (250)
387 cd00953 KDG_aldolase KDG (2-ke 83.2 10 0.00022 34.8 9.5 79 166-246 15-97 (279)
388 cd00950 DHDPS Dihydrodipicolin 83.2 17 0.00036 33.3 11.0 44 169-212 80-124 (284)
389 TIGR02317 prpB methylisocitrat 83.2 38 0.00083 31.2 18.0 197 16-278 49-252 (285)
390 PRK05718 keto-hydroxyglutarate 83.1 5.3 0.00011 35.2 7.3 145 2-240 31-176 (212)
391 PF05853 DUF849: Prokaryotic p 83.1 9 0.00019 35.1 9.1 127 167-296 22-161 (272)
392 PRK05848 nicotinate-nucleotide 83.1 6.1 0.00013 36.3 7.9 68 2-77 193-260 (273)
393 PF00290 Trp_syntA: Tryptophan 83.0 24 0.00051 32.1 11.7 167 2-206 28-217 (259)
394 PRK14326 (dimethylallyl)adenos 83.0 54 0.0012 32.9 15.3 86 93-188 253-341 (502)
395 PRK05926 hypothetical protein; 83.0 12 0.00026 36.0 10.2 75 167-246 98-185 (370)
396 TIGR01163 rpe ribulose-phospha 83.0 29 0.00064 29.8 16.7 91 139-246 94-192 (210)
397 TIGR00423 radical SAM domain p 82.6 19 0.00042 33.4 11.3 77 167-245 35-122 (309)
398 PRK06552 keto-hydroxyglutarate 82.3 34 0.00074 30.1 12.9 81 139-245 99-181 (213)
399 PLN02433 uroporphyrinogen deca 82.3 5.3 0.00011 37.8 7.5 54 173-226 181-243 (345)
400 TIGR00612 ispG_gcpE 1-hydroxy- 82.2 9.3 0.0002 35.9 8.7 98 168-288 31-134 (346)
401 PRK05458 guanosine 5'-monophos 82.2 8.2 0.00018 36.3 8.6 69 2-76 100-170 (326)
402 PRK13111 trpA tryptophan synth 82.1 39 0.00085 30.7 17.7 90 174-275 107-197 (258)
403 PRK09240 thiH thiamine biosynt 81.9 9.7 0.00021 36.5 9.2 80 167-251 103-184 (371)
404 PRK08446 coproporphyrinogen II 81.9 11 0.00024 35.7 9.6 108 171-279 31-149 (350)
405 TIGR01212 radical SAM protein, 81.8 44 0.00095 31.0 16.9 51 135-190 162-212 (302)
406 PRK02227 hypothetical protein; 81.8 20 0.00044 32.1 10.4 99 177-278 13-145 (238)
407 PRK08610 fructose-bisphosphate 81.8 31 0.00067 31.9 12.1 143 137-294 5-202 (286)
408 PRK06252 methylcobalamin:coenz 81.6 9.4 0.0002 35.9 8.9 68 173-244 182-257 (339)
409 PRK06245 cofG FO synthase subu 81.5 47 0.001 31.2 16.1 135 135-280 152-301 (336)
410 TIGR01037 pyrD_sub1_fam dihydr 81.5 44 0.00095 30.8 13.3 78 168-246 100-188 (300)
411 PRK02048 4-hydroxy-3-methylbut 81.4 67 0.0014 32.8 15.8 72 2-79 45-116 (611)
412 TIGR03249 KdgD 5-dehydro-4-deo 81.4 45 0.00097 30.8 19.8 70 2-71 30-103 (296)
413 PF13714 PEP_mutase: Phosphoen 81.4 21 0.00046 32.0 10.6 77 169-245 83-173 (238)
414 PLN02951 Molybderin biosynthes 81.3 52 0.0011 31.5 17.5 69 3-79 98-171 (373)
415 cd06556 ICL_KPHMT Members of t 81.3 41 0.00088 30.2 14.5 38 4-41 25-72 (240)
416 PLN02274 inosine-5'-monophosph 81.2 8.3 0.00018 38.6 8.7 68 2-75 251-318 (505)
417 PRK05927 hypothetical protein; 80.9 15 0.00031 35.1 9.9 78 166-245 74-162 (350)
418 PRK14337 (dimethylallyl)adenos 80.9 59 0.0013 31.9 14.6 87 94-190 246-335 (446)
419 cd02072 Glm_B12_BD B12 binding 80.9 22 0.00048 28.7 9.5 98 59-193 17-117 (128)
420 PRK13813 orotidine 5'-phosphat 80.9 37 0.0008 29.5 14.2 95 138-246 95-191 (215)
421 PRK11613 folP dihydropteroate 80.9 46 0.001 30.7 16.6 98 133-253 73-192 (282)
422 PRK00164 moaA molybdenum cofac 80.9 45 0.00098 31.1 13.3 123 137-279 53-189 (331)
423 PRK06096 molybdenum transport 80.8 15 0.00034 33.8 9.7 66 175-248 200-265 (284)
424 cd02068 radical_SAM_B12_BD B12 80.8 18 0.00039 28.6 9.2 104 141-275 8-112 (127)
425 TIGR00433 bioB biotin syntheta 80.8 7.4 0.00016 35.7 7.8 18 236-253 167-184 (296)
426 TIGR01949 AroFGH_arch predicte 80.7 37 0.00081 30.6 12.2 145 103-275 98-245 (258)
427 cd02930 DCR_FMN 2,4-dienoyl-Co 80.7 53 0.0011 31.2 14.0 58 131-190 183-243 (353)
428 PRK12858 tagatose 1,6-diphosph 80.7 47 0.001 31.5 13.1 108 133-241 140-268 (340)
429 COG2100 Predicted Fe-S oxidore 80.6 18 0.0004 33.9 9.9 75 105-186 211-286 (414)
430 cd04735 OYE_like_4_FMN Old yel 80.5 37 0.00081 32.2 12.7 138 103-244 152-310 (353)
431 TIGR02319 CPEP_Pphonmut carbox 80.5 49 0.0011 30.7 18.5 209 5-278 30-256 (294)
432 PRK11320 prpB 2-methylisocitra 80.4 34 0.00073 31.7 11.8 78 168-245 90-184 (292)
433 PTZ00413 lipoate synthase; Pro 80.2 58 0.0013 31.4 14.5 50 135-190 277-329 (398)
434 cd00951 KDGDH 5-dehydro-4-deox 80.2 48 0.001 30.5 21.3 191 2-275 25-219 (289)
435 PF04273 DUF442: Putative phos 80.1 13 0.00028 29.1 7.8 77 142-225 20-96 (110)
436 cd03307 Mta_CmuA_like MtaA_Cmu 80.1 11 0.00023 35.4 8.7 68 173-244 173-248 (326)
437 PRK07896 nicotinate-nucleotide 80.0 7.8 0.00017 35.8 7.5 69 2-78 210-278 (289)
438 COG2185 Sbm Methylmalonyl-CoA 80.0 26 0.00056 28.9 9.7 107 43-193 18-124 (143)
439 TIGR00432 arcsn_tRNA_tgt tRNA- 79.8 23 0.0005 35.7 11.3 79 166-249 62-145 (540)
440 TIGR01210 conserved hypothetic 79.7 11 0.00023 35.3 8.5 90 94-192 117-209 (313)
441 PRK14862 rimO ribosomal protei 79.7 56 0.0012 32.1 13.9 50 135-189 280-331 (440)
442 TIGR01125 MiaB-like tRNA modif 79.6 63 0.0014 31.5 14.2 49 135-188 269-319 (430)
443 COG1908 FrhD Coenzyme F420-red 79.5 8.5 0.00018 30.6 6.4 61 48-111 34-94 (132)
444 PRK13762 tRNA-modifying enzyme 79.5 38 0.00082 31.8 12.1 75 134-214 206-292 (322)
445 PLN02389 biotin synthase 79.5 19 0.00041 34.7 10.3 81 169-253 151-239 (379)
446 PRK07428 nicotinate-nucleotide 79.4 9.2 0.0002 35.4 7.8 69 2-78 207-275 (288)
447 PRK13210 putative L-xylulose 5 79.4 48 0.001 29.9 16.7 22 261-282 230-251 (284)
448 PLN02495 oxidoreductase, actin 79.0 55 0.0012 31.6 13.2 84 168-252 124-222 (385)
449 PRK06096 molybdenum transport 78.9 9.4 0.0002 35.2 7.6 68 1-76 199-266 (284)
450 cd02940 DHPD_FMN Dihydropyrimi 78.9 55 0.0012 30.3 13.8 77 168-245 110-198 (299)
451 TIGR01464 hemE uroporphyrinoge 78.7 8.2 0.00018 36.3 7.5 67 173-244 182-258 (338)
452 PF01702 TGT: Queuine tRNA-rib 78.7 9.3 0.0002 34.1 7.5 69 3-75 73-142 (238)
453 PRK06852 aldolase; Validated 78.7 24 0.00051 32.9 10.2 109 132-245 150-263 (304)
454 PRK15108 biotin synthase; Prov 78.5 20 0.00044 34.0 10.1 68 2-77 83-156 (345)
455 cd02940 DHPD_FMN Dihydropyrimi 78.5 24 0.00051 32.7 10.4 93 92-195 111-204 (299)
456 cd02801 DUS_like_FMN Dihydrour 78.5 23 0.00049 31.0 9.9 79 168-247 64-158 (231)
457 COG1809 (2R)-phospho-3-sulfola 78.4 8.5 0.00018 34.0 6.7 134 136-277 60-203 (258)
458 COG1830 FbaB DhnA-type fructos 78.4 49 0.0011 30.1 11.8 105 132-245 126-235 (265)
459 TIGR00222 panB 3-methyl-2-oxob 78.4 54 0.0012 29.9 16.1 38 4-41 28-75 (263)
460 PRK13585 1-(5-phosphoribosyl)- 78.3 48 0.001 29.3 16.3 87 172-273 150-239 (241)
461 PRK00278 trpC indole-3-glycero 78.3 53 0.0011 29.8 16.8 88 136-244 147-237 (260)
462 KOG1577|consensus 78.2 36 0.00078 31.6 11.1 147 51-226 25-190 (300)
463 PF01081 Aldolase: KDPG and KH 78.2 12 0.00025 32.6 7.7 70 168-246 17-86 (196)
464 TIGR03699 mena_SCO4550 menaqui 78.1 8.7 0.00019 36.2 7.5 77 167-245 71-158 (340)
465 TIGR01334 modD putative molybd 77.8 16 0.00035 33.5 8.9 67 175-249 199-265 (277)
466 cd00717 URO-D Uroporphyrinogen 77.7 8.7 0.00019 36.1 7.4 35 172-206 178-213 (335)
467 TIGR01501 MthylAspMutase methy 77.7 37 0.00079 27.6 10.1 99 59-193 19-119 (134)
468 PF07555 NAGidase: beta-N-acet 77.6 15 0.00032 34.3 8.7 157 92-253 16-192 (306)
469 PRK00115 hemE uroporphyrinogen 77.6 8.6 0.00019 36.4 7.3 34 173-206 188-222 (346)
470 PLN02417 dihydrodipicolinate s 77.6 55 0.0012 29.9 12.5 60 136-201 83-145 (280)
471 cd04740 DHOD_1B_like Dihydroor 77.6 18 0.00038 33.3 9.3 70 2-73 106-185 (296)
472 TIGR01361 DAHP_synth_Bsub phos 77.4 18 0.0004 32.8 9.1 100 139-248 122-232 (260)
473 cd02933 OYE_like_FMN Old yello 77.4 48 0.001 31.3 12.2 134 103-244 160-311 (338)
474 PF01729 QRPTase_C: Quinolinat 77.3 14 0.00031 31.3 7.8 66 2-75 91-156 (169)
475 COG0821 gcpE 1-hydroxy-2-methy 77.2 17 0.00037 34.2 8.7 97 168-287 33-135 (361)
476 cd01321 ADGF Adenosine deamina 77.2 68 0.0015 30.4 16.9 214 35-280 19-249 (345)
477 TIGR01431 adm_rel adenosine de 77.1 63 0.0014 32.2 13.4 154 106-279 208-374 (479)
478 TIGR02668 moaA_archaeal probab 77.1 56 0.0012 30.0 12.5 124 167-296 39-175 (302)
479 PRK08649 inosine 5-monophospha 77.0 28 0.0006 33.4 10.5 92 135-247 117-215 (368)
480 PRK04326 methionine synthase; 76.9 13 0.00029 34.8 8.3 73 2-75 165-238 (330)
481 TIGR01182 eda Entner-Doudoroff 76.9 20 0.00043 31.4 8.8 68 168-244 17-84 (204)
482 TIGR02351 thiH thiazole biosyn 76.8 15 0.00033 35.1 8.8 77 168-251 103-183 (366)
483 PRK06015 keto-hydroxyglutarate 76.6 16 0.00034 31.9 8.0 69 168-245 13-81 (201)
484 TIGR01496 DHPS dihydropteroate 76.5 10 0.00022 34.5 7.1 67 2-74 27-102 (257)
485 COG0502 BioB Biotin synthase a 76.5 21 0.00045 33.7 9.3 106 136-253 87-205 (335)
486 cd00956 Transaldolase_FSA Tran 76.3 53 0.0012 28.8 11.7 131 168-314 61-196 (211)
487 PRK07379 coproporphyrinogen II 76.2 21 0.00046 34.6 9.7 29 185-213 67-96 (400)
488 cd04733 OYE_like_2_FMN Old yel 76.2 42 0.0009 31.6 11.5 133 103-244 157-319 (338)
489 cd04733 OYE_like_2_FMN Old yel 75.6 60 0.0013 30.6 12.4 121 128-249 74-258 (338)
490 cd02931 ER_like_FMN Enoate red 75.6 79 0.0017 30.4 14.4 122 129-250 76-275 (382)
491 PF01116 F_bP_aldolase: Fructo 75.5 16 0.00035 33.7 8.2 101 136-249 3-107 (287)
492 PRK09722 allulose-6-phosphate 75.4 12 0.00027 33.3 7.2 96 137-245 96-195 (229)
493 PRK09250 fructose-bisphosphate 75.1 77 0.0017 30.1 13.4 60 133-193 176-239 (348)
494 PRK12595 bifunctional 3-deoxy- 75.0 62 0.0014 30.9 12.3 96 139-246 215-323 (360)
495 PRK13753 dihydropteroate synth 74.8 70 0.0015 29.4 13.5 112 50-227 21-132 (279)
496 TIGR00262 trpA tryptophan synt 74.8 66 0.0014 29.1 18.1 163 88-275 18-195 (256)
497 TIGR02319 CPEP_Pphonmut carbox 74.7 73 0.0016 29.6 12.6 76 169-244 90-182 (294)
498 PRK05742 nicotinate-nucleotide 74.7 13 0.00029 34.1 7.4 67 2-79 200-266 (277)
499 PRK11572 copper homeostasis pr 74.5 66 0.0014 29.1 14.9 77 167-247 66-148 (248)
500 COG2896 MoaA Molybdenum cofact 74.2 78 0.0017 29.8 12.5 122 163-296 38-178 (322)
No 1
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=100.00 E-value=1.1e-50 Score=372.16 Aligned_cols=202 Identities=64% Similarity=1.101 Sum_probs=197.0
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
++++++|++.++++.+.|+.|.+.|++++++|.+++++++++++|+.|+++.++++++|+||++++++++++.++++++.
T Consensus 86 e~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (287)
T PRK05692 86 EAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLF 165 (287)
T ss_pred HHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCC
Q psy12516 182 KMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 261 (327)
Q Consensus 182 ~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~ 261 (327)
++|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|++|||||||++||+
T Consensus 166 ~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~a 245 (287)
T PRK05692 166 ALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGAS 245 (287)
T ss_pred HcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCcc
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCC
Q psy12516 262 GNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSN 303 (327)
Q Consensus 262 Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~ 303 (327)
||+++|+++.+|+..|+++++|+++|.++++++++.+++++|
T Consensus 246 GN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~~~~~~~ 287 (287)
T PRK05692 246 GNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP 287 (287)
T ss_pred ccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999886
No 2
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=100.00 E-value=5e-50 Score=373.37 Aligned_cols=207 Identities=65% Similarity=1.072 Sum_probs=200.9
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.++++|++.++++.+.|+.|.+.|++++++|.++++.++++++++.|+++.++++++|+|||+++.+++++.++++++.+
T Consensus 129 ~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~ 208 (347)
T PLN02746 129 AAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYD 208 (347)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|..+|++|+|||+|||+||+++|+++|+++||+|++||||||||+||+|
T Consensus 209 ~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graG 288 (347)
T PLN02746 209 MGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASG 288 (347)
T ss_pred cCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCC
Confidence 99999999999999999999999999999998778999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCChhhhhc
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKA 309 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (327)
|+++|+++.+|+.+|+++++|+++|.++++++++.+|+++|+.+.+.
T Consensus 289 N~atE~lv~~L~~~G~~tgiDl~~L~~~s~~v~~~~g~~~~~~~~~~ 335 (347)
T PLN02746 289 NVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHLGRPSGSKTAVA 335 (347)
T ss_pred ChhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999876654
No 3
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=100.00 E-value=8.7e-50 Score=378.95 Aligned_cols=244 Identities=23% Similarity=0.351 Sum_probs=217.3
Q ss_pred HcCCcEEEecccCCCCCCCCCCc-------------cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCCh
Q psy12516 65 EFGISVFDSSIAGLGGCPYARGA-------------SGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTI 131 (327)
Q Consensus 65 ~aG~~~id~~~~glg~~p~~~~~-------------~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ 131 (327)
++|++.||+++..+++.+|+..+ .++...+++ +.+.++|++.++++.+.|+.|.+.++++++
T Consensus 34 ~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di-----~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~ 108 (365)
T TIGR02660 34 EAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWCRARDADI-----EAAARCGVDAVHISIPVSDLQIEAKLRKDR 108 (365)
T ss_pred HcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHH-----HHHHcCCcCEEEEEEccCHHHHHHHhCcCH
Confidence 45667777766666554431110 122344444 245678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~ 211 (327)
+|.++++.++++++++.|+++. |++++.+|++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++
T Consensus 109 ~e~l~~~~~~i~~ak~~g~~v~------~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~ 182 (365)
T TIGR02660 109 AWVLERLARLVSFARDRGLFVS------VGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQ 182 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCEEE------EeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999886 5578889999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHH-HhCCCCCCCChhhHHHH
Q psy12516 212 VIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML-EGMGIETGADLTSLLRT 290 (327)
Q Consensus 212 ~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l-~~~g~~~~~d~~~l~~~ 290 (327)
.++ ++|++|+|||+|||+||+++|+++||++||+|++|||| |+||++||+++.+| ..+|+++++|+++|.++
T Consensus 183 ~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe------raGN~~lE~lv~~L~~~~g~~~~idl~~l~~~ 255 (365)
T TIGR02660 183 AVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE------RAGNAALEEVAMALKRLLGRDTGIDTSRLPAL 255 (365)
T ss_pred hcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc------ccccCCHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 886 79999999999999999999999999999999999999 99999999999999 56999999999999999
Q ss_pred HHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 291 GHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 291 ~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
++++++.+++++| |++|+++|+||| +|||.+|||||
T Consensus 256 s~~v~~~~~~~~~~~~p~vG~~~f~h~sGiH~~~i~k~~~~Ye~~~ 301 (365)
T TIGR02660 256 SQLVARASGRPIPPQKPVVGESVFTHESGIHVDGLLKDPRTYEPFD 301 (365)
T ss_pred HHHHHHHhCCCCCCCCCcccHhHHHhccchhHHHHhCCcccCCCcC
Confidence 9999999999987 589999999997 99999999996
No 4
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=100.00 E-value=1.1e-49 Score=379.58 Aligned_cols=211 Identities=27% Similarity=0.418 Sum_probs=201.5
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+.++|++.++++.+.|+.|.+.+++++++|+++++.++++++++.|++|.+ ++++.+|++++++.++++.+.+
T Consensus 83 ~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~------~~ed~~r~~~~~l~~~~~~~~~ 156 (378)
T PRK11858 83 ASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSF------SAEDASRTDLDFLIEFAKAAEE 156 (378)
T ss_pred HHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE------EeccCCCCCHHHHHHHHHHHHh
Confidence 4467899999999999999999999999999999999999999999999873 4678889999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+ +++|++|+|||+|||+||+++|+++|+++||+|++|||| |+|
T Consensus 157 ~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe------raG 229 (378)
T PRK11858 157 AGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGE------RAG 229 (378)
T ss_pred CCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccc------ccc
Confidence 9999999999999999999999999999988 579999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHH-hCCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 263 NVATEDLVYMLE-GMGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 263 n~~~e~~~~~l~-~~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|++||+++.+|+ .+|+++++|+++|.++++++++++++++| |+||+++|+||+ +|||.+||||+
T Consensus 230 Na~lE~vv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pivG~~~F~h~sGiH~~gi~k~~~~Ye~~~ 304 (378)
T PRK11858 230 NAALEEVVMALKYLYGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFAHESGIHVDGVLKNPLTYEPFL 304 (378)
T ss_pred CccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCccccchhhhhhccccHHHHhCCcccccccC
Confidence 999999999999 58999999999999999999999999988 689999999997 99999999996
No 5
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=100.00 E-value=1.4e-48 Score=370.09 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=201.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
++.++|++.++++.++|+.|.+.+++++++|.++++.+.++++++.|+++.+.++ +.+|++++++.++++++.+
T Consensus 79 ~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~ 152 (363)
T TIGR02090 79 KAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFKRAEE 152 (363)
T ss_pred HHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999999999999875544 4568999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.++ ++|++|+|||+|||+||+++|+++|+++||+|++|||| |+|
T Consensus 153 ~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe------raG 225 (363)
T TIGR02090 153 AGADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE------RAG 225 (363)
T ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecccc------ccc
Confidence 99999999999999999999999999999888 79999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 263 NVATEDLVYMLEG-MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 263 n~~~e~~~~~l~~-~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|++||+++.+|+. +|+++++|+++|.++++++++++++++| |++|+++|+||+ +|||.+||||+
T Consensus 226 N~~lE~vv~~L~~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~~f~h~sGiH~~~i~k~~~~Ye~~~ 300 (363)
T TIGR02090 226 NAALEEVVMALKYLYGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGENAFAHESGIHVDGVIENPLTYEPIS 300 (363)
T ss_pred cccHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHhcchhHHHHcCCcccCCCCC
Confidence 9999999999997 8999999999999999999999999987 589999999997 99999999996
No 6
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=100.00 E-value=2.9e-47 Score=347.81 Aligned_cols=194 Identities=62% Similarity=1.032 Sum_probs=188.9
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.++++|++.++++.+.|+.|.+.++++++++.++++.+.++++|+.|+++.++++++|+||++++++++++.++++++.+
T Consensus 81 ~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~ 160 (274)
T cd07938 81 RALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLD 160 (274)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|++|||+|||+++|+|
T Consensus 161 ~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~eraG 240 (274)
T cd07938 161 LGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGATG 240 (274)
T ss_pred cCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCccC
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICG 296 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~ 296 (327)
|+++|+++.+|+..|+++++|+++|.++++++++
T Consensus 241 N~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~ 274 (274)
T cd07938 241 NVATEDLVYMLEGMGIETGIDLDKLLAAARWISE 274 (274)
T ss_pred CcCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999863
No 7
>PRK00915 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=7.7e-48 Score=379.20 Aligned_cols=213 Identities=26% Similarity=0.359 Sum_probs=202.7
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
+...++|.+.++++.+.|+.|.+.+++++++|+++++.+.++++++.|++|. |++||.+|++++++.++++.+.
T Consensus 86 ~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~------f~~ed~~r~d~~~l~~~~~~~~ 159 (513)
T PRK00915 86 EALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE------FSAEDATRTDLDFLCRVVEAAI 159 (513)
T ss_pred HHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EEeCCCCCCCHHHHHHHHHHHH
Confidence 3445788999999999999999999999999999999999999999999985 6688889999999999999999
Q ss_pred HcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCC
Q psy12516 182 KMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYAR 258 (327)
Q Consensus 182 ~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~ 258 (327)
++|+++|+||||+|.++|.+++++++.+++.+|. ++|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 160 ~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~GlGE----- 234 (513)
T PRK00915 160 DAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGE----- 234 (513)
T ss_pred HcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeecccc-----
Confidence 9999999999999999999999999999999885 79999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhC----CCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccC
Q psy12516 259 GASGNVATEDLVYMLEGM----GIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYAN 324 (327)
Q Consensus 259 g~~Gn~~~e~~~~~l~~~----g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~ 324 (327)
|+||++||+++.+|+.. |+++++|+++|.++++++++++++++| |+||+++|+||+ +|||.+|||
T Consensus 235 -RaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~PivG~~aF~h~sGiH~dgi~k~~~~Ye~ 313 (513)
T PRK00915 235 -RAGNAALEEVVMALKTRKDIYGVETGINTEEIYRTSRLVSQLTGMPVQPNKAIVGANAFAHESGIHQDGVLKNRETYEI 313 (513)
T ss_pred -cccCccHHHHHHHHHhhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccChhHHHhccchhHHHHcCCcccccc
Confidence 99999999999999753 999999999999999999999999987 589999999997 999999999
Q ss_pred CC
Q psy12516 325 FD 326 (327)
Q Consensus 325 ~~ 326 (327)
|+
T Consensus 314 ~~ 315 (513)
T PRK00915 314 MT 315 (513)
T ss_pred cC
Confidence 96
No 8
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=100.00 E-value=1.7e-47 Score=371.70 Aligned_cols=211 Identities=24% Similarity=0.343 Sum_probs=199.4
Q ss_pred hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 104 ~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
..+.+.+.+.++.+.|+.|.+.+++++++|+++++.+++++|++.|++ + .|++||.+|++++++.++++.+.+
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v------~f~~EDa~Rtd~efl~~~~~~a~~ 250 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDI------QFGCEDGGRSDKEFLCKILGEAIK 250 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceE------EeccccccccCHHHHHHHHHHHHh
Confidence 334477889999999999999999999999999999999999999986 4 378999999999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcC---CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 259 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~---~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g 259 (327)
+|+++|+|+||+|.++|.+++++++.+++.+| +++|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 251 ~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~GiGE------ 324 (503)
T PLN03228 251 AGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEVTINGIGE------ 324 (503)
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEEecccccc------
Confidence 99999999999999999999999999999886 478999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHh------CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCcc
Q psy12516 260 ASGNVATEDLVYMLEG------MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYA 323 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~------~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~ 323 (327)
|+||+++|+++.+|+. .|+++++|++.|.++++++++++++++| |+||.++|+||+ +|||.+||
T Consensus 325 RaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V~~~~g~~i~~~kPivG~naF~heSGIH~dgilK~p~tYe 404 (503)
T PLN03228 325 RSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMVQEYTGMYVQPHKPIVGANCFVHESGIHQDGILKNRSTYE 404 (503)
T ss_pred ccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHhccchhHHHHhCCccccc
Confidence 9999999999999987 4889999999999999999999999987 589999999997 99999999
Q ss_pred CCC
Q psy12516 324 NFD 326 (327)
Q Consensus 324 ~~~ 326 (327)
||+
T Consensus 405 ~~~ 407 (503)
T PLN03228 405 ILS 407 (503)
T ss_pred CCC
Confidence 997
No 9
>PRK09389 (R)-citramalate synthase; Provisional
Probab=100.00 E-value=2.3e-46 Score=365.69 Aligned_cols=211 Identities=24% Similarity=0.368 Sum_probs=200.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+.++|++.++++.+.|+.|.+.+++++++|.++.+.+.++++++.|++|... .++.+|++++++.++++.+.+
T Consensus 81 ~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~~~~~ 154 (488)
T PRK09389 81 AALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS------GEDASRADLDFLKELYKAGIE 154 (488)
T ss_pred HHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE------EeeCCCCCHHHHHHHHHHHHh
Confidence 45668999999999999999999999999999999999999999999998754 345679999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++..+ ++|++|+|||+|||+||+++|+++||++||+|++|+|| |+|
T Consensus 155 ~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGE------RaG 227 (488)
T PRK09389 155 AGADRICFCDTVGILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGE------RAG 227 (488)
T ss_pred CCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccc------ccc
Confidence 99999999999999999999999999998876 69999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 263 NVATEDLVYMLEG-MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 263 n~~~e~~~~~l~~-~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|++||+++++|+. +|+++++|+++|.++++++++++++++| |+||+++|+||+ +|||.+|||||
T Consensus 228 Na~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGiH~dgi~k~~~~Ye~~~ 302 (488)
T PRK09389 228 NASLEEVVMALKHLYDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFAHESGIHVDGLLKDTETYEPIT 302 (488)
T ss_pred CccHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhcchhhHHHHhCCcccCCCCC
Confidence 9999999999997 6999999999999999999999999998 589999999997 99999999997
No 10
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=100.00 E-value=2.4e-46 Score=366.46 Aligned_cols=211 Identities=26% Similarity=0.390 Sum_probs=200.0
Q ss_pred hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 104 ~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
....+.+.++++.+.|+.|.+.+++++++|.++++.+.++++++.|..|. |++||.+|++++++.++++.+.++
T Consensus 85 l~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~------f~~Ed~~r~d~~~l~~~~~~~~~~ 158 (494)
T TIGR00973 85 LKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVE------FSCEDAGRTEIPFLARIVEAAINA 158 (494)
T ss_pred ccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EEcCCCCCCCHHHHHHHHHHHHHc
Confidence 34557888999999999999999999999999999999999999999875 678899999999999999999999
Q ss_pred CcCEEEecCCCCccCHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCC
Q psy12516 184 GCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGA 260 (327)
Q Consensus 184 g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~ 260 (327)
|+++|+||||+|.++|.+++++++.+++.+|. ++|++|+|||+|||+||+++|+++||++||+|++|+|| |
T Consensus 159 Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlGE------R 232 (494)
T TIGR00973 159 GATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIGE------R 232 (494)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecccc------c
Confidence 99999999999999999999999999999873 67999999999999999999999999999999999999 9
Q ss_pred CCCccHHHHHHHHHh----CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 261 SGNVATEDLVYMLEG----MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 261 ~Gn~~~e~~~~~l~~----~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
+||++||+++++|+. +|+++++|++.|.++++++++++|+++| |+||+++|+|++ +|||.+|||||
T Consensus 233 aGNa~le~vv~~L~~~~~~~g~~~~idl~~L~~~s~~v~~~~g~~v~~~~PivG~~aF~h~sGiH~dgi~k~~~~Ye~~~ 312 (494)
T TIGR00973 233 AGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQLTGMPVQPNKAIVGDNAFAHESGIHQDGVLKNKETYEIMS 312 (494)
T ss_pred ccCccHHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccchhHHHHhCCcccccCCC
Confidence 999999999999974 5899999999999999999999999987 589999999997 99999999997
No 11
>PLN02321 2-isopropylmalate synthase
Probab=100.00 E-value=2.9e-46 Score=370.63 Aligned_cols=206 Identities=21% Similarity=0.326 Sum_probs=195.1
Q ss_pred cchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE
Q psy12516 109 VKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE 187 (327)
Q Consensus 109 id~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~ 187 (327)
...++++.+.|+.|++.+++++++|+++.+.+.++++++.|.. |. |++||++|++++++.++++.+.++|+++
T Consensus 183 ~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~------fs~EDa~rtd~d~l~~~~~~a~~aGa~~ 256 (632)
T PLN02321 183 RPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVE------FSPEDAGRSDPEFLYRILGEVIKAGATT 256 (632)
T ss_pred CCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEE------EecccCCCCCHHHHHHHHHHHHHcCCCE
Confidence 3468899999999999999999999999999999999999984 43 7789999999999999999999999999
Q ss_pred EEecCCCCccCHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCc
Q psy12516 188 ISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNV 264 (327)
Q Consensus 188 i~l~Dt~G~~~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~ 264 (327)
|+|+||+|.++|.+++++++.+++.+|. ++|++|+|||+|||+||+++|+++||++||+|++|+|| |+||+
T Consensus 257 I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGlGE------RaGNa 330 (632)
T PLN02321 257 LNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGIGE------RAGNA 330 (632)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc------cccCc
Confidence 9999999999999999999999999874 56999999999999999999999999999999999999 99999
Q ss_pred cHHHHHHHHHh------CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 265 ATEDLVYMLEG------MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 265 ~~e~~~~~l~~------~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
+||+++++|+. +|+.+++|+++|.++++++++++|+++| |+||+++|+||+ +|||.+|||||
T Consensus 331 ~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~s~~V~~~~g~~v~~~kPiVG~naFaheSGIH~dgvlk~~~tYe~i~ 408 (632)
T PLN02321 331 SLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMVSEYTGMQVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIIS 408 (632)
T ss_pred cHHHHHHHHHhccCccccCcccccCHHHHHHHHHHHHHHhCcCCCCCcccccccceehhcCccHHHHccCcccccccC
Confidence 99999999975 5689999999999999999999999987 589999999997 99999999996
No 12
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=100.00 E-value=3.5e-46 Score=367.30 Aligned_cols=211 Identities=20% Similarity=0.272 Sum_probs=198.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCC---CCCCCChHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP---YEGAVPPHNVTRVATA 179 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~---~~~r~~~e~l~~~~~~ 179 (327)
...++|++.++++.+.|+.|.+.+++++++|.++++.+.++++++.|.+|. |+++ +.+|++++++.++++.
T Consensus 93 ~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~------~~~e~~~Da~r~d~~~l~~~~~~ 166 (524)
T PRK12344 93 ALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI------FDAEHFFDGYKANPEYALATLKA 166 (524)
T ss_pred HHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE------EccccccccccCCHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999987 4445 5679999999999999
Q ss_pred HHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC
Q psy12516 180 LYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 259 (327)
Q Consensus 180 ~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g 259 (327)
+.++|+++|+|+||+|.++|.+++++++.+++.+ +++|++|+|||+|||+||+++|+++||++||+|++|+||
T Consensus 167 ~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlGE------ 239 (524)
T PRK12344 167 AAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYGE------ 239 (524)
T ss_pred HHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc------
Confidence 9999999999999999999999999999999988 579999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHh-CCC--CCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 260 ASGNVATEDLVYMLEG-MGI--ETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~-~g~--~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|+||++||+++++|+. .|+ ++++|+++|.++++++++++++++| |+||+++|+||| +|||.+|||||
T Consensus 240 RaGNa~lE~lv~~L~~~~g~~~~t~idl~~l~~is~~v~~~~~~~v~~~~pivG~~~F~h~SGiH~dgi~k~~~~Ye~~~ 319 (524)
T PRK12344 240 RCGNANLCSIIPNLQLKMGYECLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAFAHKGGIHVSAVLKDPRTYEHID 319 (524)
T ss_pred cccCcCHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeECcchhhhhccccHHHHhCCcccccCCC
Confidence 9999999999999974 674 4799999999999999999999987 589999999997 99999999996
No 13
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-45 Score=351.74 Aligned_cols=212 Identities=30% Similarity=0.454 Sum_probs=199.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
..++++++.+++|.++|+.|.+.++++++++.++.+.+.++||++.|+++... +++.+|++++++.++++.+.+
T Consensus 84 a~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~------~Ed~~rt~~~~l~~~~~~~~~ 157 (409)
T COG0119 84 ALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS------AEDATRTDPEFLAEVVKAAIE 157 (409)
T ss_pred HHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE------eeccccCCHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999888743 455679999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 261 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~ 261 (327)
+|+++|+++||+|.++|.+++++++.+++.+| ..+|++|||||+|||+||+++|+++||++||+|++|+|| |+
T Consensus 158 ~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiGE------Ra 231 (409)
T COG0119 158 AGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIGE------RA 231 (409)
T ss_pred cCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEeccccee------cc
Confidence 99999999999999999999999999999998 489999999999999999999999999999999999999 99
Q ss_pred CCccHHHHHHHHHh---CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 262 GNVATEDLVYMLEG---MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 262 Gn~~~e~~~~~l~~---~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
||+++|+++.+|.. +|+++++|+++|.++++++++.++.++| |+||+++|+|++ +|||++|||++
T Consensus 232 Gna~l~~v~~~l~~~~~~~~~~~idl~~l~~~s~~v~~~~~~~v~~n~pivG~naFah~sGIH~dgvlkn~~tYE~i~ 309 (409)
T COG0119 232 GNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIPVPPNKPIVGENAFAHESGIHQDGVLKNPETYEPID 309 (409)
T ss_pred ccccHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHhhcchhHHHHhhCHhhcCCCC
Confidence 99999999965543 7789999999999999999999999776 589999999996 99999999986
No 14
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=100.00 E-value=2.2e-45 Score=361.13 Aligned_cols=215 Identities=19% Similarity=0.254 Sum_probs=200.4
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
...+++.+.++++.+.|+.|.+.+++++++|+++.+.+.++++++.|.+|....+. | .|.+|++++++.++++.+.+
T Consensus 89 a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~-f--~D~~r~~~~~l~~~~~~a~~ 165 (526)
T TIGR00977 89 ALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEH-F--FDGYKANPEYALATLATAQQ 165 (526)
T ss_pred HHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeee-e--eecccCCHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999998744333 2 14568999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|..+|++|+|||+|||+||+++|+++||++||+|++|+|| |+|
T Consensus 166 aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGiGE------RaG 239 (526)
T TIGR00977 166 AGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYGE------RCG 239 (526)
T ss_pred CCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccC------ccC
Confidence 99999999999999999999999999999998767999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHh-CCCC--CCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 263 NVATEDLVYMLEG-MGIE--TGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 263 n~~~e~~~~~l~~-~g~~--~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|++||++++.|.. +|++ +++|+++|.++++++++++++++| |+||+++|+||| +|||.+|||||
T Consensus 240 Na~Le~v~~~L~~~~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGiH~dgi~k~~~~Ye~~~ 316 (526)
T TIGR00977 240 NANLCSLIPNLQLKLGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRSAFAHKGGVHVSAVQRNPFTYEHIA 316 (526)
T ss_pred CCcHHHHHHHHHhhcCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcceeeeeccccHHHHhCCccccccCC
Confidence 9999999999974 7887 689999999999999999999987 589999999997 99999999997
No 15
>PRK03739 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=7.2e-44 Score=352.17 Aligned_cols=215 Identities=14% Similarity=0.090 Sum_probs=195.6
Q ss_pred ccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE-EEEEeeeccCCCCCCCChHHHHHHHHHHHH--
Q psy12516 106 QCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV-RGYISCVVGCPYEGAVPPHNVTRVATALYK-- 182 (327)
Q Consensus 106 ~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v-~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~-- 182 (327)
..+.+.++++.++|+.|++.+++++++|+++++.++++++++.|... ...+...|+.+|.+|++++++.++++.+.+
T Consensus 119 ~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~~~ 198 (552)
T PRK03739 119 GAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVIDVW 198 (552)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHHhh
Confidence 34455789999999999999999999999999999999999988421 111334577889999999999999999886
Q ss_pred -cCcC---EEEecCCCCccCHHHHHHHHHHHHHhcC---CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCC
Q psy12516 183 -MGCY---EISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCP 255 (327)
Q Consensus 183 -~g~~---~i~l~Dt~G~~~P~~~~~~~~~~~~~~~---~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p 255 (327)
.|++ +|.|+||+|.++|.++++++..+++.+| +++|++|+|||+|||+||+++|+++||++||+|++|+||
T Consensus 199 ~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~gtvnG~GE-- 276 (552)
T PRK03739 199 QPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGCLFGNGE-- 276 (552)
T ss_pred cCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEeeCCcCcc--
Confidence 4554 5999999999999999999999999887 678999999999999999999999999999999999999
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCcc-----
Q psy12516 256 YARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLE----- 320 (327)
Q Consensus 256 ~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~----- 320 (327)
|+||++||+++.+|+.+|+++++|+++|.++++++++++|+++| |+||+++|+||+ +|||.
T Consensus 277 ----RaGNa~le~vv~~L~~~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~hesGiH~dgilk~~~~~~~~ 352 (552)
T PRK03739 277 ----RTGNVDLVTLALNLYTQGVDPGLDFSDIDEIRRTVEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFAAQKAD 352 (552)
T ss_pred ----cccChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhccchhHHHHhcCchhcccc
Confidence 99999999999999889999999999999999999999999987 589999999997 99988
Q ss_pred ------CccCCC
Q psy12516 321 ------SYANFD 326 (327)
Q Consensus 321 ------~y~~~~ 326 (327)
+|||||
T Consensus 353 ~~~~~~~Ye~~~ 364 (552)
T PRK03739 353 AIVWEVPYLPID 364 (552)
T ss_pred cccccccccccC
Confidence 899997
No 16
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=100.00 E-value=5.4e-44 Score=353.87 Aligned_cols=215 Identities=17% Similarity=0.133 Sum_probs=197.0
Q ss_pred ccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEE----eeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 106 QCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYI----SCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 106 ~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l----~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
..+.+.++++.++|+.|.+.+++++++|+++.+.+.++++++.|.++..++ ...|+.++.+|.+++++.++++.+.
T Consensus 115 ~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~ 194 (564)
T TIGR00970 115 GAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVK 194 (564)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHH
Confidence 344457999999999999999999999999999999999999987544332 2346677888999999999999999
Q ss_pred HcCc------CEEEecCCCCccCHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCC
Q psy12516 182 KMGC------YEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 182 ~~g~------~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G 252 (327)
++|+ ++|+|+||+|.++|.++++++..+++.+|. ++|++|+|||+|||+||+++|+++||++||+|++|+|
T Consensus 195 ~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~G~G 274 (564)
T TIGR00970 195 EVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLFGNG 274 (564)
T ss_pred HhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecCcCC
Confidence 9987 499999999999999999999999988764 4699999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCcc--
Q psy12516 253 GCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLE-- 320 (327)
Q Consensus 253 ~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~-- 320 (327)
| |+||++||+++++|+.+|+++++|++.|.++++++++++++++| |+||+++|+|+| +|||.
T Consensus 275 E------RaGNa~le~lv~~L~~~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~h~SGiH~dai~K~~~~~ 348 (564)
T TIGR00970 275 E------RTGNVDLVTLALNLYTQGVSPNLDFSNLDEIRRTVEYCNKIPVHERHPYGGDLVYTAFSGSHQDAINKGLDAM 348 (564)
T ss_pred c------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhhhHhhhccchhHHHHhcCchhh
Confidence 9 99999999999999999999999999999999999999999987 589999999997 89976
Q ss_pred -------------CccCCC
Q psy12516 321 -------------SYANFD 326 (327)
Q Consensus 321 -------------~y~~~~ 326 (327)
+|||||
T Consensus 349 ~~~~~~~~~~~~~~Ye~~~ 367 (564)
T TIGR00970 349 KLDAAAADMLWQVPYLPLD 367 (564)
T ss_pred cccccccccccccccccCC
Confidence 999996
No 17
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=100.00 E-value=1.5e-42 Score=317.26 Aligned_cols=194 Identities=24% Similarity=0.333 Sum_probs=186.6
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+.++|++.++++.+.|+.|.+.++|++++|.++++.++++++++.|+++.+++++ |+||+ |.+++++.++++++.+
T Consensus 82 ~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~--r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 82 WIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGM--RDSPDYVFQLVDFLSD 158 (280)
T ss_pred HHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCC--cCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999998 88887 7899999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|++|||| |+|
T Consensus 159 ~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe------~aG 232 (280)
T cd07945 159 LPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGE------RAG 232 (280)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc------ccc
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHH-hCCCCCCCChhhHHHHHHHHHHhcCCCCChh
Q psy12516 263 NVATEDLVYMLE-GMGIETGADLTSLLRTGHYICGKLKKPSNSK 305 (327)
Q Consensus 263 n~~~e~~~~~l~-~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~ 305 (327)
|++||+++.+|+ ++|+++++|+++|.++++++++.+|+++|+.
T Consensus 233 N~~~E~~v~~L~~~~g~~t~idl~~l~~~~~~v~~~~g~~~~~~ 276 (280)
T cd07945 233 NAPLASVIAVLKDKLKVKTNIDEKRLNRASRLVETFSGKRIPAN 276 (280)
T ss_pred CccHHHHHHHHHHhcCCCcCcCHHHHHHHHHHHHHHhCcCCCCC
Confidence 999999999996 4899999999999999999999999999863
No 18
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=100.00 E-value=4.1e-42 Score=312.59 Aligned_cols=214 Identities=23% Similarity=0.360 Sum_probs=189.9
Q ss_pred HcCCcEEEecccCCCCCCCCCCc-------------cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCCh
Q psy12516 65 EFGISVFDSSIAGLGGCPYARGA-------------SGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTI 131 (327)
Q Consensus 65 ~aG~~~id~~~~glg~~p~~~~~-------------~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ 131 (327)
++|++.||+++..+++.+|+..+ ..+...+++ +.+.++|++.++++.+.|+.|.+.++|+++
T Consensus 31 ~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v-----~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~ 105 (259)
T cd07939 31 EAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDI-----EAALRCGVTAVHISIPVSDIHLAHKLGKDR 105 (259)
T ss_pred HcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHH-----HHHHhCCcCEEEEEEecCHHHHHHHhCCCH
Confidence 57777777777666654432110 112334443 245678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~ 211 (327)
++.++++.++++++++.|++|. |++++.++++++++.++++++.++|+++|+|+||+|.++|++++++++.+++
T Consensus 106 ~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~ 179 (259)
T cd07939 106 AWVLDQLRRLVGRAKDRGLFVS------VGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRA 179 (259)
T ss_pred HHHHHHHHHHHHHHHHCCCeEE------EeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999886 5567888999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhC-CCCCCCChhhHHHH
Q psy12516 212 VIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGM-GIETGADLTSLLRT 290 (327)
Q Consensus 212 ~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~-g~~~~~d~~~l~~~ 290 (327)
.+| ++|++|+|||+|||+||+++|+++|+++||+|++|||+ |+||++||+++.+|++. |+++++|+++|.++
T Consensus 180 ~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~------~aGN~~tE~lv~~l~~~~g~~~~idl~~l~~~ 252 (259)
T cd07939 180 ATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGE------RAGNAALEEVVMALKHLYGRDTGIDTTRLPEL 252 (259)
T ss_pred hcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccc------cccCcCHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 998 79999999999999999999999999999999999999 99999999999999986 99999999999999
Q ss_pred HHHHHH
Q psy12516 291 GHYICG 296 (327)
Q Consensus 291 ~~~~~~ 296 (327)
++++++
T Consensus 253 ~~~~~~ 258 (259)
T cd07939 253 SQLVAR 258 (259)
T ss_pred HHHHHh
Confidence 999876
No 19
>PRK14847 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=306.71 Aligned_cols=194 Identities=16% Similarity=0.101 Sum_probs=177.7
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC-------eEEEEEeeeccCCCCCCCChHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI-------RVRGYISCVVGCPYEGAVPPHNVTR 175 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi-------~v~~~l~~~~g~~~~~r~~~e~l~~ 175 (327)
.+..++.+.++++.+.|+.|.+.+++++++|.++++.+.+++|++.|. .|. |+.+|.+|++++++.+
T Consensus 118 ~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~------~~~EDasRad~dfL~~ 191 (333)
T PRK14847 118 ALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYE------YSPETFSLAELDFARE 191 (333)
T ss_pred HhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEE------EeeecCCCCCHHHHHH
Confidence 444556677999999999999999999999999999999999999965 444 6678899999999999
Q ss_pred HHHHHHHc-C-----cCEEEecCCCCccCHHHHHHHHHHHHHhcC---CCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 176 VATALYKM-G-----CYEISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 176 ~~~~~~~~-g-----~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~---~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+++.+.+. | +++|+|+||+|.++|.+++++++.+++.++ +++|++|+|||+|||+||+++|+++||++||+
T Consensus 192 ~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~ 271 (333)
T PRK14847 192 VCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEG 271 (333)
T ss_pred HHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEe
Confidence 99987655 5 677999999999999999999999998875 68999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCCh---hhhh
Q psy12516 247 SIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNS---KVAK 308 (327)
Q Consensus 247 s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~---~~~~ 308 (327)
|++|+|| |+||++||+++.+|+..|+++++|++.|.++++++++.+++++|+ ++|-
T Consensus 272 tv~G~GE------RaGNa~lE~v~~~L~~~g~~~~id~~~l~~~~~~v~~~sg~~v~~~kPivg~ 330 (333)
T PRK14847 272 CLFGNGE------RTGNVDLVALALNLERQGIASGLDFRDMAALRACVSECNQLPIDVFHPYAWL 330 (333)
T ss_pred eCCcCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeecC
Confidence 9999999 999999999999999999999999999999999999999999985 5654
No 20
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=6.6e-42 Score=331.01 Aligned_cols=250 Identities=23% Similarity=0.351 Sum_probs=229.1
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
+.|.|.||+ |.++|..++...+.+.+..+. +++|++..+.|| ...||++++.++|+||++.+.
T Consensus 3 ~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~G-------------Gatfd~~~rfl~Edpwerlr~ 69 (499)
T PRK12330 3 RKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNAGYWSVECWG-------------GATFDACIRFLNEDPWERLRT 69 (499)
T ss_pred CCcEEEECCccchhhcccCccCCHHHHHHHHHHHHhcCCCEEEecC-------------CcchhhhhcccCCCHHHHHHH
Confidence 358899999 999999999999999888875 779999999986 467999999999999987753
Q ss_pred ---------------C------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy12516 89 ---------------G------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALT 147 (327)
Q Consensus 89 ---------------g------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~ 147 (327)
| ...+++++..+.+++.++|+|.+++|+++|+ +++++..++.+++
T Consensus 70 lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lnd--------------v~nl~~ai~~vk~ 135 (499)
T PRK12330 70 FRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALND--------------PRNLEHAMKAVKK 135 (499)
T ss_pred HHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCCh--------------HHHHHHHHHHHHH
Confidence 1 1467888888889999999999999999999 7889999999999
Q ss_pred cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC-CCeEEEeecCCc
Q psy12516 148 NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTY 226 (327)
Q Consensus 148 ~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~ 226 (327)
.|.++.++++++.+ | .++++++.++++++.++|+++|+|+||+|+++|.+++++++.+++.+| +++|++|+|||+
T Consensus 136 ag~~~~~~i~yt~s-p---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~ 211 (499)
T PRK12330 136 VGKHAQGTICYTVS-P---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTT 211 (499)
T ss_pred hCCeEEEEEEEecC-C---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCC
Confidence 99999999988542 2 679999999999999999999999999999999999999999999996 799999999999
Q ss_pred CcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 227 GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 227 g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
|||+||+++|+++||++||+|++|||+ ++||+++|+++.+|+..|+++++|+++|.+++++++++..
T Consensus 212 GlA~An~laAieAGad~vDtai~Glg~------~aGn~atE~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr~ 278 (499)
T PRK12330 212 GVTLVSLMKAIEAGVDVVDTAISSMSL------GPGHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVRP 278 (499)
T ss_pred CcHHHHHHHHHHcCCCEEEeecccccc------cccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999987643
No 21
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=100.00 E-value=3.2e-40 Score=301.61 Aligned_cols=181 Identities=29% Similarity=0.419 Sum_probs=171.3
Q ss_pred hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 104 ~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
+...+++.++++.++|+.|.+.++++++++.++.+.++++++++.|+++. |++|+.++++++++.++++++.++
T Consensus 82 ~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~~~~~~~~~ 155 (268)
T cd07940 82 LKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE------FSAEDATRTDLDFLIEVVEAAIEA 155 (268)
T ss_pred CCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EeeecCCCCCHHHHHHHHHHHHHc
Confidence 33345999999999999999999999999999999999999999999886 567888899999999999999999
Q ss_pred CcCEEEecCCCCccCHHHHHHHHHHHHHhcCC--CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCC
Q psy12516 184 GCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA--DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 261 (327)
Q Consensus 184 g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~--~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~ 261 (327)
|+++|+|+||+|.++|.+++++++.+++.+|+ ++|++|+|||+|||+||+++|+++|+++||+|++|||+ |+
T Consensus 156 G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~------~a 229 (268)
T cd07940 156 GATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGE------RA 229 (268)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeecccc------cc
Confidence 99999999999999999999999999999986 89999999999999999999999999999999999999 99
Q ss_pred CCccHHHHHHHHHhCC----CCCCCChhhHHHHHHHHHH
Q psy12516 262 GNVATEDLVYMLEGMG----IETGADLTSLLRTGHYICG 296 (327)
Q Consensus 262 Gn~~~e~~~~~l~~~g----~~~~~d~~~l~~~~~~~~~ 296 (327)
||++||+++.+|+..| +++++|+++|.++++++++
T Consensus 230 GN~~tE~lv~~L~~~~~~~~~~t~idl~~l~~~~~~~~~ 268 (268)
T cd07940 230 GNAALEEVVMALKTRYDYYGVETGIDTEELYETSRLVSR 268 (268)
T ss_pred ccccHHHHHHHHHhcccccCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999876 9999999999999999863
No 22
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=1.9e-41 Score=325.12 Aligned_cols=249 Identities=22% Similarity=0.335 Sum_probs=229.3
Q ss_pred EEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc-
Q psy12516 14 EISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS- 88 (327)
Q Consensus 14 ~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~- 88 (327)
.|.|.||+ |.++++..|...+.+++..+. +++||+..+.|| ...||++++.+.|+||++.+.
T Consensus 12 ~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wG-------------GAtfd~~~rfl~edpwerlr~~ 78 (468)
T PRK12581 12 QVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWG-------------GATFDACIRFLNEDPWERLRTL 78 (468)
T ss_pred ceEEEECCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecC-------------CcchhhhhcccCCCHHHHHHHH
Confidence 69999999 999999999999999998875 788999999996 468999999999999987753
Q ss_pred --------------C-C-----CcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 89 --------------G-N-----VATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 89 --------------g-n-----~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
| | ..+++++..+.+++.++|+|.++++++.++ +++++..++.+|+.
T Consensus 79 r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd--------------~~n~~~ai~~ak~~ 144 (468)
T PRK12581 79 KKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALND--------------PRNIQQALRAVKKT 144 (468)
T ss_pred HHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCC--------------HHHHHHHHHHHHHc
Confidence 2 1 357799999999999999999999999988 89999999999999
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ 228 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~ 228 (327)
|.++.+.+++.. +| .++.+++.++++++.++|+++|+|+||+|.++|.+++++++.+++ .++++|++|+|||.||
T Consensus 145 G~~~~~~i~yt~-sp---~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~-~~~~pi~~H~Hnt~Gl 219 (468)
T PRK12581 145 GKEAQLCIAYTT-SP---VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA-MTNLPLIVHTHATSGI 219 (468)
T ss_pred CCEEEEEEEEEe-CC---cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh-ccCCeEEEEeCCCCcc
Confidence 999999999865 33 579999999999999999999999999999999999999999997 4568999999999999
Q ss_pred HHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCC
Q psy12516 229 ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKK 300 (327)
Q Consensus 229 a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~ 300 (327)
|+||+++|+++||++||+|++|+|+ ++||+++|+++.+|+..|+++++|+++|.+++++++++...
T Consensus 220 A~An~laAieAGad~vD~ai~g~g~------gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~ 285 (468)
T PRK12581 220 SQMTYLAAVEAGADRIDTALSPFSE------GTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQK 285 (468)
T ss_pred HHHHHHHHHHcCCCEEEeeccccCC------CcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 89999999999999999999999999999999999887544
No 23
>KOG2367|consensus
Probab=100.00 E-value=6.2e-40 Score=304.90 Aligned_cols=206 Identities=21% Similarity=0.291 Sum_probs=195.0
Q ss_pred cchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC-eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE
Q psy12516 109 VKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI-RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE 187 (327)
Q Consensus 109 id~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi-~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~ 187 (327)
-.+++++.+.|+.|++++++++++|.++.+.+.++++++.|. .++ |++|+.+|++++++.++++.+.++|+.+
T Consensus 147 r~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ie------FSpEd~~rse~~fl~eI~~aV~Kag~~t 220 (560)
T KOG2367|consen 147 RPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIE------FSPEDFGRSELEFLLEILGAVIKAGVTT 220 (560)
T ss_pred cceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEE------ECccccccCcHHHHHHHHHHHHHhCCcc
Confidence 346888999999999999999999999999999999999994 454 8899999999999999999999999999
Q ss_pred EEecCCCCccCHHHHHHHHHHHHHhcCCC---eEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCc
Q psy12516 188 ISLGDTIGVGTPGTMRLMLEDVLTVIPAD---RLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNV 264 (327)
Q Consensus 188 i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~---~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~ 264 (327)
+.|+||+|+.+|.++++++..++.+.|+. -|+.|||||+|+|+||+..++.+|+++||+|++|+|| |+||+
T Consensus 221 vnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~VE~~i~GiGE------RtGn~ 294 (560)
T KOG2367|consen 221 VNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQVEVTINGIGE------RTGNA 294 (560)
T ss_pred ccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceEEEEeecccc------ccCCC
Confidence 99999999999999999999999988764 5999999999999999999999999999999999999 99999
Q ss_pred cHHHHHHHHHhCC---CCCCCChhhHHHHHHHHHHhcCCCCCh---hhhhccccccc-------ccCccCccCCC
Q psy12516 265 ATEDLVYMLEGMG---IETGADLTSLLRTGHYICGKLKKPSNS---KVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 265 ~~e~~~~~l~~~g---~~~~~d~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
||++|+++|.-.| +...+|+.++.++.+.++++.++++|| ++|.++|+|++ +|||.+|||.|
T Consensus 295 ~L~~v~m~my~~g~~~vs~~y~~~dlr~I~~mVed~~~i~v~p~~pi~G~~~Fth~SGiHqdaIlk~r~tYeiLd 369 (560)
T KOG2367|consen 295 PLEEVVMAMYCRGPDYVSGNYTFIDLREIENMVEDCTGINVPPHKPIVGANAFTHESGIHQDAILKNRSTYEILD 369 (560)
T ss_pred CHHHHHHHheecCchhcCCccccccHHHHHHHHHHhhcCCCCCCCccccceeEeecccccHHHHhcCCCCcccCC
Confidence 9999999999888 888999999999999999999999985 79999999997 99999999986
No 24
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=100.00 E-value=6.2e-41 Score=331.20 Aligned_cols=249 Identities=22% Similarity=0.303 Sum_probs=231.1
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
+.+.|.||+ |.+|.+.+|....++.+..|. ++.||+..+.||. ..||++++.++||||++.+.
T Consensus 2 ~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~~g~~siE~~gG-------------atfd~~~rfl~edpwerl~~ 68 (596)
T PRK14042 2 SKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDVGFWAMEVWGG-------------ATFDACLRFLKEDPWSRLRQ 68 (596)
T ss_pred CceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHhcCCCEEEeeCC-------------cccceeecccCCCHHHHHHH
Confidence 457899999 999999999999999999885 7899999999974 67999999999999988753
Q ss_pred ---------------C-C-----CcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy12516 89 ---------------G-N-----VATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALT 147 (327)
Q Consensus 89 ---------------g-n-----~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~ 147 (327)
| | ..+++++..+.+++.++|+|.+++|++.++ +++++..++.+++
T Consensus 69 ~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd--------------~~n~~~~i~~~k~ 134 (596)
T PRK14042 69 LRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALND--------------ARNLKVAIDAIKS 134 (596)
T ss_pred HHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcc--------------hHHHHHHHHHHHH
Confidence 1 1 458899999999999999999999999998 8999999999999
Q ss_pred cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC
Q psy12516 148 NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227 (327)
Q Consensus 148 ~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g 227 (327)
.|.++.+.++++. +| .++++++.++++++.++|+++|+|+||+|+++|.+++++++.+|+.++ ++|++|+|||.|
T Consensus 135 ~G~~~~~~i~yt~-sp---~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~G 209 (596)
T PRK14042 135 HKKHAQGAICYTT-SP---VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG-LPVHLHSHSTSG 209 (596)
T ss_pred cCCEEEEEEEecC-CC---CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCC
Confidence 9999999999864 34 689999999999999999999999999999999999999999999986 799999999999
Q ss_pred cHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 228 ~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
||+||+++|+++||++||+|+.|||+ ++||+++|+++.+|+..|+++++|+++|.+++++++++..
T Consensus 210 la~an~laAieaGad~iD~ai~glGg------~tGn~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~ 275 (596)
T PRK14042 210 LASICHYEAVLAGCNHIDTAISSFSG------GASHPPTEALVAALTDTPYDTELDLNILLEIDDYFKAVRK 275 (596)
T ss_pred cHHHHHHHHHHhCCCEEEeccccccC------CCCcHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 8999999999999999999999999999999999988743
No 25
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=6.6e-41 Score=323.38 Aligned_cols=247 Identities=25% Similarity=0.341 Sum_probs=219.4
Q ss_pred EEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc--
Q psy12516 15 ISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS-- 88 (327)
Q Consensus 15 i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~-- 88 (327)
|.|.||+ |.|++..++...+..++..+. .++|++..+.|| ...||++++.++++||++.+.
T Consensus 3 V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~g-------------gatfd~~~~Fl~e~p~e~l~~l~ 69 (467)
T PRK14041 3 VMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWG-------------GATFDVCVRFLNENPWERLKEIR 69 (467)
T ss_pred eEEEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecC-------------CccchhhhcccCCCHHHHHHHHH
Confidence 7899999 999997666666666665553 667888888875 356888888899988854431
Q ss_pred -------------C------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC
Q psy12516 89 -------------G------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG 149 (327)
Q Consensus 89 -------------g------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G 149 (327)
| ....++++..+.+.+.++|+|.++++.++|+ ++++.+.++++++.|
T Consensus 70 ~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~~G 135 (467)
T PRK14041 70 KRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALND--------------IRNLEKSIEVAKKHG 135 (467)
T ss_pred HhCCCCEEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCH--------------HHHHHHHHHHHHHCC
Confidence 1 1367889988888999999999999999998 677889999999999
Q ss_pred CeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH
Q psy12516 150 IRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA 229 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a 229 (327)
.++.++++++++ | +++++++.++++++.++|+++|+|+||+|+++|.+++++++.+|+.++ ++|++|+|||+|||
T Consensus 136 ~~v~~~i~~t~~-p---~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA 210 (467)
T PRK14041 136 AHVQGAISYTVS-P---VHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLA 210 (467)
T ss_pred CEEEEEEEeccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcH
Confidence 999999998774 3 689999999999999999999999999999999999999999999997 79999999999999
Q ss_pred HHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 230 LANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 230 ~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
+||+++|+++||++||+|++|+|+ ++||+++|+++.+|+..|+++++|+++|.+++++++++..
T Consensus 211 ~AN~laAieaGad~vD~sv~~~g~------gagN~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr~ 274 (467)
T PRK14041 211 SLAYLAAVEAGADMFDTAISPFSM------GTSQPPFESMYYAFRENGKETDFDRKALKFLVEYFTKVRE 274 (467)
T ss_pred HHHHHHHHHhCCCEEEeeccccCC------CCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999988743
No 26
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=1.4e-40 Score=320.64 Aligned_cols=247 Identities=24% Similarity=0.363 Sum_probs=216.9
Q ss_pred EEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc-
Q psy12516 14 EISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS- 88 (327)
Q Consensus 14 ~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~- 88 (327)
.|.|.||+ |.|+|+.++...+...+..+. .++|++..+.+| ...||++++.++++||++.+.
T Consensus 3 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~g-------------gatf~~~~~f~~e~p~e~l~~l 69 (448)
T PRK12331 3 KIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWG-------------GATFDACLRFLNEDPWERLRKI 69 (448)
T ss_pred ccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecC-------------CccchhhhccCCCCHHHHHHHH
Confidence 58899999 999997766667766666553 667888888875 366888888999999865532
Q ss_pred ----C----------------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 89 ----G----------------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 89 ----g----------------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
- ...+++++....+++.++|+|.++++.+.|+ ++++.+.++++++.
T Consensus 70 ~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd--------------~~n~~~~v~~ak~~ 135 (448)
T PRK12331 70 RKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALND--------------VRNLETAVKATKKA 135 (448)
T ss_pred HHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCc--------------HHHHHHHHHHHHHc
Confidence 0 1346677777778889999999999999999 45677789999999
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ 228 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~ 228 (327)
|++++++++++++ .+++++++.++++++.++|+|+|+|+||+|+++|.+++++++.+|+.++ ++|++|+|||+||
T Consensus 136 G~~v~~~i~~t~~----p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~Gl 210 (448)
T PRK12331 136 GGHAQVAISYTTS----PVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT-VPLEVHTHATSGI 210 (448)
T ss_pred CCeEEEEEEeecC----CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 9999998888763 3699999999999999999999999999999999999999999999987 7999999999999
Q ss_pred HHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhc
Q psy12516 229 ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKL 298 (327)
Q Consensus 229 a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~ 298 (327)
|+||+++|+++||++||+|++|+|+ ++||+++|+++.+|+..|+++++|+++|.+++++++++.
T Consensus 211 A~AN~laAieaGad~vD~sv~glg~------gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~r 274 (448)
T PRK12331 211 AEMTYLKAIEAGADIIDTAISPFAG------GTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPIR 274 (448)
T ss_pred HHHHHHHHHHcCCCEEEeeccccCC------CcCCHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 899999999999999999999999999999999997763
No 27
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=100.00 E-value=2e-40 Score=303.39 Aligned_cols=182 Identities=25% Similarity=0.379 Sum_probs=167.4
Q ss_pred HHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHH
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHN 172 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~ 172 (327)
+.++.....++..++|++.++++.+.|+ ++++.+.++++|+.|+++..++++++ .+++++++
T Consensus 89 p~~~~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~~~~----~~~~~~~~ 150 (275)
T cd07937 89 PDDVVELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAICYTG----SPVHTLEY 150 (275)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEEecC----CCCCCHHH
Confidence 3344444556778899999999999988 78899999999999999988777643 46899999
Q ss_pred HHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCC
Q psy12516 173 VTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G 252 (327)
+.++++++.++|+++|+|+||+|.++|.+++++++.+++.++ ++|++|+|||+|||+||+++|+++|+++||+|++|||
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG 229 (275)
T cd07937 151 YVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLS 229 (275)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccc
Confidence 999999999999999999999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 253 GCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 253 ~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
| |+||++||+++.+|+..|+++++|+++|.+++++++++..
T Consensus 230 ~------~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~~ 270 (275)
T cd07937 230 G------GTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVRK 270 (275)
T ss_pred C------CcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999998753
No 28
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=100.00 E-value=1.4e-39 Score=295.03 Aligned_cols=189 Identities=21% Similarity=0.305 Sum_probs=174.4
Q ss_pred CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCC
Q psy12516 90 NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 90 n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~ 169 (327)
+...+++- .+.++|++.++++.++|+.|++.+++++++|.++.+.++++++++.|++|.++++++| |++
T Consensus 71 r~~~~di~-----~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~------r~~ 139 (262)
T cd07948 71 RCHMDDAR-----IAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSF------RSD 139 (262)
T ss_pred cCCHHHHH-----HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC------CCC
Confidence 34455543 4567899999999999999999999999999999999999999999999998887765 577
Q ss_pred hHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 170 PHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
++++.++++++.++|+++|+|+||+|.++|.+++++++.+++.++ ++|++|+|||+|||+||+++|+++|+++||+|++
T Consensus 140 ~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~ 218 (262)
T cd07948 140 LVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVL 218 (262)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 899999999999999999999999999999999999999999988 7999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccHHHHHHHHHhC---CCCCCCChhhHHHHHHHHHH
Q psy12516 250 GLGGCPYARGASGNVATEDLVYMLEGM---GIETGADLTSLLRTGHYICG 296 (327)
Q Consensus 250 G~G~~p~~~g~~Gn~~~e~~~~~l~~~---g~~~~~d~~~l~~~~~~~~~ 296 (327)
|||| |+||+++|+++.+|+.. ++++++|+++|.++++++++
T Consensus 219 GlGe------raGn~~~e~~~~~l~~~~~~~~~~~~~l~~l~~~~~~v~~ 262 (262)
T cd07948 219 GIGE------RNGITPLGGLIARMYTADPEYVVSKYKLELLPELERLVAD 262 (262)
T ss_pred cccc------ccCCccHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHhC
Confidence 9999 99999999999999753 67789999999999999864
No 29
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2.3e-40 Score=328.64 Aligned_cols=248 Identities=24% Similarity=0.374 Sum_probs=225.0
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
+.|.|.||+ |.|+|+.++...+.+.+..+. +++|++..+.|| ...||+++..++++||++.+.
T Consensus 3 k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~G-------------Gatf~~~~~~~~e~p~e~lr~ 69 (593)
T PRK14040 3 KPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVGYWSLESWG-------------GATFDACIRFLGEDPWERLRE 69 (593)
T ss_pred CccEEEECCcccccccccccccCHHHHHHHHHHHHHcCCCEEEecC-------------CcchhhhccccCCCHHHHHHH
Confidence 358999999 999999988888888888775 778999999986 367999999999999976642
Q ss_pred ---------------C------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy12516 89 ---------------G------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALT 147 (327)
Q Consensus 89 ---------------g------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~ 147 (327)
| ..++++++..+.+.+.++|+|.+++|++.++ ++++...++++|+
T Consensus 70 l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd--------------~~~~~~ai~~ak~ 135 (593)
T PRK14040 70 LKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMND--------------PRNLETALKAVRK 135 (593)
T ss_pred HHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc--------------HHHHHHHHHHHHH
Confidence 1 1346788888888999999999999999998 6789999999999
Q ss_pred cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC
Q psy12516 148 NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227 (327)
Q Consensus 148 ~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g 227 (327)
.|.++.+++++.+. | .++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++.+. ++|++|+|||.|
T Consensus 136 ~G~~~~~~i~yt~~-p---~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~G 210 (593)
T PRK14040 136 VGAHAQGTLSYTTS-P---VHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD-VPLHLHCHATTG 210 (593)
T ss_pred cCCeEEEEEEEeeC-C---ccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCc
Confidence 99999998887542 3 578999999999999999999999999999999999999999999984 799999999999
Q ss_pred cHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhc
Q psy12516 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKL 298 (327)
Q Consensus 228 ~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~ 298 (327)
||+||+++|+++||++||+|++|||+ |+||+++|+++.+|+..|+++++|++.|.+++++++++.
T Consensus 211 lA~An~laAieAGa~~vD~ai~glG~------~~Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~ 275 (593)
T PRK14040 211 LSTATLLKAIEAGIDGVDTAISSMSM------TYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVR 275 (593)
T ss_pred hHHHHHHHHHHcCCCEEEeccccccc------cccchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999999999999999999999999999874
No 30
>KOG2368|consensus
Probab=100.00 E-value=1.9e-39 Score=276.18 Aligned_cols=212 Identities=64% Similarity=1.119 Sum_probs=204.6
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.++.+|...+.+|.+.|+.|+..|+|++.+|.+.+++++.+.|+++++.|++|+++..||||++...|+.+.++.+.+.+
T Consensus 101 ~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~ 180 (316)
T KOG2368|consen 101 AAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYE 180 (316)
T ss_pred HHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCccCCcCHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+..|.|.||.|..||..+.+++..+.+..|.-.+.+||||+||.|+||.|.+++.|++.+|.|+.|+|+||+|-|.+|
T Consensus 181 mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vvDSsvaGLGGCPYAkGAsG 260 (316)
T KOG2368|consen 181 MGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMGIRVVDSSVAGLGGCPYAKGASG 260 (316)
T ss_pred CCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceehhhhccccCCCCccccCCC
Confidence 99999999999999999999999999999998778999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCChhhhhcccccc
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKALPVKE 314 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (327)
|+.+|+++.+|+.+|++|++|+++|.++++++.+.+|++-.+.+++.-++-.
T Consensus 261 N~ATEDlvYmL~GlG~~TgVnL~Klieag~fi~~algr~~~Skva~A~~~~~ 312 (316)
T KOG2368|consen 261 NLATEDLVYMLNGLGLHTGVNLDKLIEAGDFICKALGRTTWSKVAQAMMAKK 312 (316)
T ss_pred CchHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHhCCCchhHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999998888766543
No 31
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=100.00 E-value=2.6e-38 Score=288.78 Aligned_cols=181 Identities=15% Similarity=0.136 Sum_probs=164.5
Q ss_pred chhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE-EEEEeeeccCCCCCCCChHHHHHHHHHHHHc---Cc
Q psy12516 110 KEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV-RGYISCVVGCPYEGAVPPHNVTRVATALYKM---GC 185 (327)
Q Consensus 110 d~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v-~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~---g~ 185 (327)
+.++++.+.|+.|.+.+++++++|+++.+.++++++++.|++. ...+...|+.+|.+|.+++++.++++.+.++ |+
T Consensus 94 ~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~ 173 (284)
T cd07942 94 AIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQPTP 173 (284)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 3688999999999999999999999999999999999999751 1113334667778899999999999999887 54
Q ss_pred ---CEEEecCCCCccCHHHHHHHHHHHHHhcC---CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC
Q psy12516 186 ---YEISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 259 (327)
Q Consensus 186 ---~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~---~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g 259 (327)
++|+|+||+|.++|.++++++..+++.+| +++|++|+|||+|||+||+++|+++|+++||+|++|+|+
T Consensus 174 ~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id~~~~g~Ge------ 247 (284)
T cd07942 174 ENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRVEGTLFGNGE------ 247 (284)
T ss_pred CcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEEEeeCccCCc------
Confidence 49999999999999999999999999886 456999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy12516 260 ASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICG 296 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~ 296 (327)
|+||++||+++.+|+.+|+++++|+++|.++++++++
T Consensus 248 RaGN~~~E~lv~~l~~~g~~t~id~~~l~~~s~~v~~ 284 (284)
T cd07942 248 RTGNVDLVTLALNLYSQGVDPGLDFSDIDEIIRVVEE 284 (284)
T ss_pred cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999863
No 32
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=100.00 E-value=5.3e-38 Score=287.28 Aligned_cols=185 Identities=22% Similarity=0.310 Sum_probs=171.8
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+.++|++.++++.+.|+.|.+.++++++++.++++.+.++++|+.|++|.++.+. | .+.++++++++.++++++.+
T Consensus 86 ~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~-~--~d~~~~~~~~~~~~~~~~~~ 162 (273)
T cd07941 86 ALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEH-F--FDGYKANPEYALATLKAAAE 162 (273)
T ss_pred HHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEe-c--cccCCCCHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999876443 2 23458999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|++|||| |+|
T Consensus 163 ~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGe------raG 236 (273)
T cd07941 163 AGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGE------RCG 236 (273)
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEecccccc------ccc
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHH-hCCCC--CCCChhhHHHHHHHHHH
Q psy12516 263 NVATEDLVYMLE-GMGIE--TGADLTSLLRTGHYICG 296 (327)
Q Consensus 263 n~~~e~~~~~l~-~~g~~--~~~d~~~l~~~~~~~~~ 296 (327)
|+++|+++.+|+ ++|++ +++|+++|.++++++++
T Consensus 237 n~~~e~~~~~L~~~~~~~~~~~~~~~~l~~~~~~v~~ 273 (273)
T cd07941 237 NANLCSIIPNLQLKMGYECLPEENLKKLTELSRFVSE 273 (273)
T ss_pred cccHHHHHHHHHhccCCCCcCccCHHHHHHHHHHHhC
Confidence 999999999998 57776 47999999999999863
No 33
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=100.00 E-value=5.2e-38 Score=286.57 Aligned_cols=182 Identities=25% Similarity=0.389 Sum_probs=165.6
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCh-----HHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPP-----HNVTRVA 177 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~-----e~l~~~~ 177 (327)
.++++|++.+.++.++|+.|++.|+|++++|+++++.+++++|++.|+++.+++.. .+|.++ +++.+++
T Consensus 82 ~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed------~~r~d~~~~v~~~~~~~~ 155 (279)
T cd07947 82 LVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLED------ITRADIYGFVLPFVNKLM 155 (279)
T ss_pred HHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEc------ccCCCcccchHHHHHHHH
Confidence 34577999999999999999999999999999999999999999999999877644 445555 3777777
Q ss_pred HHHHHcCcC-EEEecCCCCccCH-------HHHHHHHHHHHHh--cCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 178 TALYKMGCY-EISLGDTIGVGTP-------GTMRLMLEDVLTV--IPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 178 ~~~~~~g~~-~i~l~Dt~G~~~P-------~~~~~~~~~~~~~--~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
+.+.++|++ +|+|+||+|.++| .+++++++.+++. +|+++|++|+|||+|||+||+++|+++|+++||+|
T Consensus 156 ~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~vd~s 235 (279)
T cd07947 156 KLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASWVNCT 235 (279)
T ss_pred HHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCCCEEEEe
Confidence 777779999 8999999999988 6899999999988 56678999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHhC-CCCCCCChhhHHHHHHHHHH
Q psy12516 248 IAGLGGCPYARGASGNVATEDLVYMLEGM-GIETGADLTSLLRTGHYICG 296 (327)
Q Consensus 248 ~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~-g~~~~~d~~~l~~~~~~~~~ 296 (327)
++|||+ |+||++||+++.+|+.+ |+++++|+++|.++++++++
T Consensus 236 v~GlGe------~aGN~~tE~lv~~l~~~~g~~t~idl~~l~~~~~~~~~ 279 (279)
T cd07947 236 LLGIGE------RTGNCPLEAMVIEYAQLKGNFDGMNLEVITEIAEYFEK 279 (279)
T ss_pred cccccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 999999 99999999999999987 99999999999999999763
No 34
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=100.00 E-value=2.8e-39 Score=321.52 Aligned_cols=264 Identities=24% Similarity=0.352 Sum_probs=231.9
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
+.|.|.||+ |.|+++.++...+.+.+..+. .++|++..+.|| ...+|++++.++++||++.+.
T Consensus 2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~g-------------gatfd~~~rfl~edp~e~l~~ 68 (592)
T PRK09282 2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWG-------------GATFDVCIRYLNEDPWERLRK 68 (592)
T ss_pred CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecC-------------CccchhhcccCCccHHHHHHH
Confidence 458899999 999998766666766666653 667888888875 467999999999999976643
Q ss_pred ---------------C------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy12516 89 ---------------G------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALT 147 (327)
Q Consensus 89 ---------------g------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~ 147 (327)
| ..++++++..+.+++.++|+|.+++++++|+ ++++.+.++++++
T Consensus 69 l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~ 134 (592)
T PRK09282 69 LKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALND--------------VRNMEVAIKAAKK 134 (592)
T ss_pred HHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecCh--------------HHHHHHHHHHHHH
Confidence 1 1346778888888899999999999999999 6788999999999
Q ss_pred cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC
Q psy12516 148 NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227 (327)
Q Consensus 148 ~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g 227 (327)
.|.++.++++++++ | +++++++.++++++.++|+++|+||||+|.++|.+++++++.+++.++ ++|++|+|||.|
T Consensus 135 ~G~~v~~~i~~t~~-p---~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~G 209 (592)
T PRK09282 135 AGAHVQGTISYTTS-P---VHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQLHSHCTSG 209 (592)
T ss_pred cCCEEEEEEEeccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCC
Confidence 99999999988763 4 589999999999999999999999999999999999999999999987 799999999999
Q ss_pred cHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCC--CCh-
Q psy12516 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKP--SNS- 304 (327)
Q Consensus 228 ~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~--~~~- 304 (327)
||+||+++|+++||++||+|++|+|+ |+||+++|+++.+|+..|+++++|+++|.+++++++++...- ++|
T Consensus 210 la~An~laAv~aGad~vD~ai~g~g~------~agn~~~e~vv~~L~~~g~~~~idl~~l~~~s~~~~~~~~~y~~~~~~ 283 (592)
T PRK09282 210 LAPMTYLKAVEAGVDIIDTAISPLAF------GTSQPPTESMVAALKGTPYDTGLDLELLFEIAEYFREVRKKYKQFESE 283 (592)
T ss_pred cHHHHHHHHHHhCCCEEEeeccccCC------CcCCHhHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999999999 999999999999999999999999999999999999986543 322
Q ss_pred --hhhhcccccc
Q psy12516 305 --KVAKALPVKE 314 (327)
Q Consensus 305 --~~~~~~~~~~ 314 (327)
....+++.|+
T Consensus 284 ~~~~~~~v~~~~ 295 (592)
T PRK09282 284 FTIVDTRVLIHQ 295 (592)
T ss_pred cccCCccEEEEc
Confidence 4667888888
No 35
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=100.00 E-value=3.7e-39 Score=295.34 Aligned_cols=248 Identities=27% Similarity=0.400 Sum_probs=229.1
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
..|.+.||+ |++|...+|.+++++...... +++|||.-+.||. ..||++++.|+|+||+|+|.
T Consensus 4 k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~WGG-------------ATFDaciRfLnEDPWeRLr~ 70 (472)
T COG5016 4 KKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVWGG-------------ATFDACIRFLNEDPWERLRE 70 (472)
T ss_pred ceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEecCC-------------ccHHHHHHHhcCCHHHHHHH
Confidence 468899998 999999999999999988754 8999999999974 79999999999999998863
Q ss_pred -----CC----------------CcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy12516 89 -----GN----------------VATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALT 147 (327)
Q Consensus 89 -----gn----------------~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~ 147 (327)
.| ...+|++..+.++++++|+|.+|+|++.+| +++++..++.+++
T Consensus 71 lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND--------------~RNl~~ai~a~kk 136 (472)
T COG5016 71 LKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALND--------------VRNLKTAIKAAKK 136 (472)
T ss_pred HHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccc--------------hhHHHHHHHHHHh
Confidence 22 467889999999999999999999999999 8899999999999
Q ss_pred cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC
Q psy12516 148 NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227 (327)
Q Consensus 148 ~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g 227 (327)
.|.|+.+.+++.. +| .++.+++.++++++.++|+|.|+|+|++|+++|...+++|+.+|+.++ ++|.+|+|.+.|
T Consensus 137 ~G~h~q~~i~YT~-sP---vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG 211 (472)
T COG5016 137 HGAHVQGTISYTT-SP---VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHATSG 211 (472)
T ss_pred cCceeEEEEEecc-CC---cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC-CeeEEecccccc
Confidence 9999999999965 44 489999999999999999999999999999999999999999999999 799999999999
Q ss_pred cHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhc
Q psy12516 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKL 298 (327)
Q Consensus 228 ~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~ 298 (327)
||.++.+.|+++|+|.||+++..+.+ +++++++|.++.+|+..++++++|++.+.++++++.++.
T Consensus 212 ~a~m~ylkAvEAGvD~iDTAisp~S~------gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vr 276 (472)
T COG5016 212 MAEMTYLKAVEAGVDGIDTAISPLSG------GTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVR 276 (472)
T ss_pred hHHHHHHHHHHhCcchhhhhhccccC------CCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999995555 599999999999999999999999999999999998753
No 36
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=100.00 E-value=4.7e-39 Score=319.07 Aligned_cols=245 Identities=24% Similarity=0.372 Sum_probs=215.0
Q ss_pred ecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc----
Q psy12516 17 LGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS---- 88 (327)
Q Consensus 17 ~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~---- 88 (327)
|.||+ |.|+++..+...+...+..+. .++|++..+.|| ...||++++.++++||++.+.
T Consensus 1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~G-------------Gatfd~~~~f~~e~~~e~l~~l~~~ 67 (582)
T TIGR01108 1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDVGYWSLEVWG-------------GATFDACIRFLNEDPWERLRELKKA 67 (582)
T ss_pred CccCCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecC-------------CcccccccccCCCCHHHHHHHHHHh
Confidence 46777 999987666666666665543 567888888775 367888899999999865532
Q ss_pred -----------C-C-----CcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe
Q psy12516 89 -----------G-N-----VATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR 151 (327)
Q Consensus 89 -----------g-n-----~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~ 151 (327)
| | ..+++++..+.+.+.++|+|.++++.++|+ .+++...++++++.|++
T Consensus 68 ~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~~G~~ 133 (582)
T TIGR01108 68 LPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALND--------------PRNLQAAIQAAKKHGAH 133 (582)
T ss_pred CCCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCc--------------HHHHHHHHHHHHHcCCE
Confidence 1 1 356778887788899999999999999998 56788899999999999
Q ss_pred EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHH
Q psy12516 152 VRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALA 231 (327)
Q Consensus 152 v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~a 231 (327)
+.+++++++ +| +++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++.++ ++|++|+|||.|||+|
T Consensus 134 v~~~i~~t~-~p---~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~A 208 (582)
T TIGR01108 134 AQGTISYTT-SP---VHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEM 208 (582)
T ss_pred EEEEEEecc-CC---CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHH
Confidence 999998866 55 489999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred HHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 232 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 232 n~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
|+++|+++||++||+|++|||+ |+||++||+++.+|+..|+++++|+++|.+++++++++..
T Consensus 209 n~laAveaGa~~vd~ai~GlG~------~tGn~~le~vv~~L~~~g~~tgid~~~L~~l~~~~~~v~~ 270 (582)
T TIGR01108 209 ALLKAIEAGADGIDTAISSMSG------GTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFREVRK 270 (582)
T ss_pred HHHHHHHhCCCEEEeccccccc------cccChhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999999988644
No 37
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=100.00 E-value=1.9e-37 Score=282.69 Aligned_cols=184 Identities=41% Similarity=0.652 Sum_probs=174.2
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
...++|++.++++.+.|+.|.+.+++++.++.++.+.+.++++++.|+++.++++.++.| .++++++.++++.+.+
T Consensus 82 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----~~~~~~l~~~~~~~~~ 157 (265)
T cd03174 82 RALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC----KTDPEYVLEVAKALEE 157 (265)
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC----CCCHHHHHHHHHHHHH
Confidence 446778999999999999999999999999999999999999999999999988876533 3899999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|++.|+++||+|.++|+++.++++.+++.++++++++|+|||+|||+||+++|+++||++||+|++|||+ |+|
T Consensus 158 ~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~------~~G 231 (265)
T cd03174 158 AGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGE------RAG 231 (265)
T ss_pred cCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccc------ccc
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICG 296 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~ 296 (327)
|+++|+++.+|+..|+++++|++.|.++++++++
T Consensus 232 n~~~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 265 (265)
T cd03174 232 NAATEDLVAALEGLGIDTGIDLEKLLEISRYVEE 265 (265)
T ss_pred CccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998863
No 38
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=100.00 E-value=1.3e-37 Score=279.75 Aligned_cols=163 Identities=34% Similarity=0.542 Sum_probs=149.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
...++|++.++++.+.|+.|.+.+++++.++.++++.++++++|+.|+++. |++++.++++++++.++++++.+
T Consensus 75 ~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~------~~~~~~~~~~~~~~~~~~~~~~~ 148 (237)
T PF00682_consen 75 AAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA------FGCEDASRTDPEELLELAEALAE 148 (237)
T ss_dssp HHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE------EEETTTGGSSHHHHHHHHHHHHH
T ss_pred hhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE------eCccccccccHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999995 55667789999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|+.|||+ |+|
T Consensus 149 ~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~------~~G 222 (237)
T PF00682_consen 149 AGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGE------RAG 222 (237)
T ss_dssp HT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSS------TTS
T ss_pred cCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCC------CCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHhCC
Q psy12516 263 NVATEDLVYMLEGMG 277 (327)
Q Consensus 263 n~~~e~~~~~l~~~g 277 (327)
|++||+++.+|+.+|
T Consensus 223 n~~le~lv~~L~~~g 237 (237)
T PF00682_consen 223 NAPLEELVAALERMG 237 (237)
T ss_dssp B-BHHHHHHHHHHT-
T ss_pred CccHHHHHHHHhhcC
Confidence 999999999999875
No 39
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=100.00 E-value=3.4e-37 Score=288.02 Aligned_cols=216 Identities=24% Similarity=0.404 Sum_probs=179.2
Q ss_pred HHHH-HcCCcEEEeccc-CCCCCCCCCCccCCCcHHHHHHHhh---------------------hhhcccCcchhhhhhh
Q psy12516 61 LTAM-EFGISVFDSSIA-GLGGCPYARGASGNVATEDLVYMLE---------------------GKSMQCGVKEIAVFAS 117 (327)
Q Consensus 61 ~~a~-~aG~~~id~~~~-glg~~p~~~~~~gn~~~e~v~~~l~---------------------~~~~~~Gid~i~l~~~ 117 (327)
..++ ++|++.||++++ |+|+..|..+.....+.|.+-.... +.+.++|++.++++..
T Consensus 30 a~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~ 109 (333)
T TIGR03217 30 AAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATH 109 (333)
T ss_pred HHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEec
Confidence 3344 688999998875 7777666655544444444322211 1234456666666655
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc
Q psy12516 118 ASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG 197 (327)
Q Consensus 118 ~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~ 197 (327)
.++ .+...+.++++|+.|+++.++++++ ++++++++.++++.+.++|+++|+|+||+|.+
T Consensus 110 ~~e--------------~d~~~~~i~~ak~~G~~v~~~l~~s------~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~ 169 (333)
T TIGR03217 110 CTE--------------ADVSEQHIGMARELGMDTVGFLMMS------HMTPPEKLAEQAKLMESYGADCVYIVDSAGAM 169 (333)
T ss_pred cch--------------HHHHHHHHHHHHHcCCeEEEEEEcc------cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCC
Confidence 444 4568899999999999999988874 37899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhC
Q psy12516 198 TPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGM 276 (327)
Q Consensus 198 ~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~ 276 (327)
+|.++.++++.+++.++ +++|++|+|||+|||+||+++|+++|+++||+|+.|||+ ++||+|||+++.+|+++
T Consensus 170 ~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~------~aGN~~~E~lv~~l~~~ 243 (333)
T TIGR03217 170 LPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGA------GAGNAPLEVFVAVLDRL 243 (333)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccc------cccCccHHHHHHHHHhc
Confidence 99999999999999985 689999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCCCChhhHHHHHHHH-HHhcCCCC
Q psy12516 277 GIETGADLTSLLRTGHYI-CGKLKKPS 302 (327)
Q Consensus 277 g~~~~~d~~~l~~~~~~~-~~~~~~~~ 302 (327)
|+++++|+++|.++++.+ ..+..+++
T Consensus 244 g~~tgidl~~l~~~a~~~v~p~~~~~~ 270 (333)
T TIGR03217 244 GWNTGCDLFKLMDAAEDIVRPLMDRPV 270 (333)
T ss_pred CCCCCcCHHHHHHHHHHHHHhhccCCC
Confidence 999999999999999866 55565654
No 40
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=100.00 E-value=8.3e-37 Score=286.10 Aligned_cols=210 Identities=26% Similarity=0.439 Sum_probs=173.5
Q ss_pred HcCCcEEEeccc-CCCCCCCCCCccCCCcHHHHHHHhh----------------------hhhcccCcchhhhhhhhhHH
Q psy12516 65 EFGISVFDSSIA-GLGGCPYARGASGNVATEDLVYMLE----------------------GKSMQCGVKEIAVFASASEM 121 (327)
Q Consensus 65 ~aG~~~id~~~~-glg~~p~~~~~~gn~~~e~v~~~l~----------------------~~~~~~Gid~i~l~~~~sd~ 121 (327)
++|++.||++++ |+|+..|..+.....+.| .+..+. +.+.++|++.++++...++
T Consensus 36 ~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e-~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e- 113 (337)
T PRK08195 36 AAGVPVIEVTHGDGLGGSSFNYGFGAHTDEE-YIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTE- 113 (337)
T ss_pred HcCCCEEEeecCCCCCCccccCCCCCCCHHH-HHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecch-
Confidence 678889998865 677655554433333322 222221 1223445666665554444
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHH
Q psy12516 122 FSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGT 201 (327)
Q Consensus 122 ~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~ 201 (327)
.+.+.+.++++|+.|+++.++++++ ++++++++.++++.+.++|+++|+|+||+|.++|++
T Consensus 114 -------------~~~~~~~i~~ak~~G~~v~~~l~~a------~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~ 174 (337)
T PRK08195 114 -------------ADVSEQHIGLARELGMDTVGFLMMS------HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPED 174 (337)
T ss_pred -------------HHHHHHHHHHHHHCCCeEEEEEEec------cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHH
Confidence 4568899999999999999988874 478999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 202 MRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 202 ~~~~~~~~~~~~-~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
++++++.+++.+ |+++|++|+|||+|||+||+++|+++|+++||+|+.|||+ ++||++||+++.+|+++|+++
T Consensus 175 v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~------~aGN~~tE~lv~~L~~~g~~t 248 (337)
T PRK08195 175 VRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGA------GAGNTPLEVLVAVLDRMGWET 248 (337)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcc------cccCccHHHHHHHHHhcCCCC
Confidence 999999999999 6799999999999999999999999999999999999999 999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHh-cCCC
Q psy12516 281 GADLTSLLRTGHYICGK-LKKP 301 (327)
Q Consensus 281 ~~d~~~l~~~~~~~~~~-~~~~ 301 (327)
++|+++|.++++++..- ...+
T Consensus 249 gidl~~l~~~a~~~~~p~~~~~ 270 (337)
T PRK08195 249 GVDLYKLMDAAEDLVRPLMDRP 270 (337)
T ss_pred CcCHHHHHHHHHHHHhhhccCC
Confidence 99999999999987553 4344
No 41
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=100.00 E-value=2.3e-36 Score=275.47 Aligned_cols=168 Identities=28% Similarity=0.417 Sum_probs=156.8
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+.++|++.++++.+.|+ .+.++++++++|+.|+++.++++.+ ++++++++.++++++.+
T Consensus 93 ~a~~~g~~~iri~~~~s~--------------~~~~~~~i~~ak~~G~~v~~~~~~~------~~~~~~~~~~~~~~~~~ 152 (263)
T cd07943 93 MAADLGVDVVRVATHCTE--------------ADVSEQHIGAARKLGMDVVGFLMMS------HMASPEELAEQAKLMES 152 (263)
T ss_pred HHHHcCCCEEEEEechhh--------------HHHHHHHHHHHHHCCCeEEEEEEec------cCCCHHHHHHHHHHHHH
Confidence 445789999999988887 4567889999999999999888764 47899999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.++.++|++|+|||+|||+||+++|+++|+++||+|++|||| |+|
T Consensus 153 ~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~------~aG 226 (263)
T cd07943 153 YGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGA------GAG 226 (263)
T ss_pred cCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccC------CcC
Confidence 99999999999999999999999999999998669999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICG 296 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~ 296 (327)
|++||+++.+|+..|+++++|+++|.++++++.+
T Consensus 227 N~~~E~lv~~L~~~g~~~~idl~~l~~~~~~~~~ 260 (263)
T cd07943 227 NTPLEVLVAVLERMGIETGIDLYKLMDAAEDLVR 260 (263)
T ss_pred CccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999865
No 42
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=5.7e-38 Score=330.46 Aligned_cols=253 Identities=21% Similarity=0.287 Sum_probs=231.3
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-Ce--eEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCC
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DR--LAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 86 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~--~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~ 86 (327)
+.|.|.||+ |+||.+.+|.+..++++..|. .+ .+|+.-+.||. ..||++++.|+||||+|+
T Consensus 529 ~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wgg-------------Atfd~~~rfl~EdPwerl 595 (1143)
T TIGR01235 529 KRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGG-------------ATFDVAMRFLHEDPWERL 595 (1143)
T ss_pred CCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCC-------------ccHHHHHHHhcCCHHHHH
Confidence 469999999 999999999999999999885 44 69999999974 679999999999999887
Q ss_pred cc---------------C------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy12516 87 AS---------------G------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA 145 (327)
Q Consensus 87 ~~---------------g------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a 145 (327)
+. | ..++++++..+.+++.++|+|.+++|+++++ +++++..++.+
T Consensus 596 ~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~--------------~~n~~~~~~~~ 661 (1143)
T TIGR01235 596 EDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNW--------------VENMRVGMDAV 661 (1143)
T ss_pred HHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcC--------------HHHHHHHHHHH
Confidence 53 1 2578999999999999999999999999999 89999999999
Q ss_pred HHcCCeEEEEEeeecc--CCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeec
Q psy12516 146 LTNGIRVRGYISCVVG--CPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g--~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~H 223 (327)
++.|.+++++++++-. .|....++.+++.++++++.++|+++|+|+||+|+++|.+++++++.+|+.+ +++|++|+|
T Consensus 662 ~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H~H 740 (1143)
T TIGR01235 662 AEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPIHFHTH 740 (1143)
T ss_pred HHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeEEEEEC
Confidence 9999999999998521 1222257899999999999999999999999999999999999999999998 579999999
Q ss_pred CCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 224 n~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
||.|+|+||+++|+++||++||+|++|||+ .++++++|+++.+|+..|+++++|+++|.+++++++++..
T Consensus 741 dt~Gla~an~laA~eaGad~vD~ai~gl~G------~ts~p~~e~~v~~L~~~~~~tgidl~~l~~is~~~~~vr~ 810 (1143)
T TIGR01235 741 DTSGIAVASMLAAVEAGVDVVDVAVDSMSG------LTSQPSLGAIVAALEGSERDPGLNVAWIRELSAYWEAVRN 810 (1143)
T ss_pred CCCCcHHHHHHHHHHhCCCEEEecchhhcC------CCCCHhHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 8899999999999999999999999999999999998644
No 43
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=100.00 E-value=6.2e-36 Score=272.25 Aligned_cols=167 Identities=20% Similarity=0.273 Sum_probs=151.6
Q ss_pred cccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 105 ~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
.++|++.++++.+.++ ++++.++++++|+.|++|.+++++++ +++++++.++++++.++|
T Consensus 92 ~~~gv~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~~~~a~------~~~~~~~~~~~~~~~~~g 151 (266)
T cd07944 92 SGSVVDMIRVAFHKHE--------------FDEALPLIKAIKEKGYEVFFNLMAIS------GYSDEELLELLELVNEIK 151 (266)
T ss_pred hcCCcCEEEEeccccc--------------HHHHHHHHHHHHHCCCeEEEEEEeec------CCCHHHHHHHHHHHHhCC
Confidence 4456666666554443 88999999999999999998888754 589999999999999999
Q ss_pred cCEEEecCCCCccCHHHHHHHHHHHHHhcCC-CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCC
Q psy12516 185 CYEISLGDTIGVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGN 263 (327)
Q Consensus 185 ~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~-~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn 263 (327)
+++|+|+||+|.++|++++++++.+++.++. ++|++|+|||+|||+||+++|+++|+++||+|++|||| |+||
T Consensus 152 ~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~------~aGN 225 (266)
T cd07944 152 PDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGR------GAGN 225 (266)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCC------CcCc
Confidence 9999999999999999999999999999874 89999999999999999999999999999999999999 9999
Q ss_pred ccHHHHHHHHHhCCCCCCCChhhHHHHH-HHHHHhc
Q psy12516 264 VATEDLVYMLEGMGIETGADLTSLLRTG-HYICGKL 298 (327)
Q Consensus 264 ~~~e~~~~~l~~~g~~~~~d~~~l~~~~-~~~~~~~ 298 (327)
++||+++.+|+.. +++++|+++|.+++ ++++++.
T Consensus 226 ~~~E~~v~~l~~~-~~~~~dl~~l~~~~~~~~~~~~ 260 (266)
T cd07944 226 LPTELLLDYLNNK-FGKKYNLEPVLELIDEYIAPLK 260 (266)
T ss_pred HHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHHH
Confidence 9999999999988 78999999999999 7887764
No 44
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=2.7e-37 Score=326.74 Aligned_cols=268 Identities=21% Similarity=0.280 Sum_probs=232.1
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-Cee--EEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCC
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRL--AVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 86 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~--~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~ 86 (327)
+.|.|.||+ |.|+|+.++.....+.+..+. .++ |++..+.||. ..||+++..+++|||++.
T Consensus 531 ~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~gg-------------atfd~~~r~l~e~p~erl 597 (1146)
T PRK12999 531 KRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGG-------------ATFDVAYRFLKEDPWERL 597 (1146)
T ss_pred CCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCC-------------cchhhhccccCCCHHHHH
Confidence 469999999 999999998888888888775 678 9999999963 568999999999999776
Q ss_pred cc---------------------CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy12516 87 AS---------------------GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA 145 (327)
Q Consensus 87 ~~---------------------gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a 145 (327)
+. .+.++++++..+-+.+.++|+|.+++|++.++ +++++..++.+
T Consensus 598 ~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd--------------~~~~~~~i~~v 663 (1146)
T PRK12999 598 AELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNW--------------VENMRVAIDAV 663 (1146)
T ss_pred HHHHHhCCCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCCh--------------HHHHHHHHHHH
Confidence 42 12457778887778899999999999999988 77889999999
Q ss_pred HHcCCeEEEEEeee--ccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeec
Q psy12516 146 LTNGIRVRGYISCV--VGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~--~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~H 223 (327)
++.|..+.+.+++. ...|....++++++.++++++.++|+++|+|+||+|+++|.+++++++.+|+.+ +++|++|+|
T Consensus 664 k~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ipi~~H~H 742 (1146)
T PRK12999 664 RETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLPIHLHTH 742 (1146)
T ss_pred HHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCeEEEEeC
Confidence 99999888888874 112223348999999999999999999999999999999999999999999998 479999999
Q ss_pred CCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCC
Q psy12516 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSN 303 (327)
Q Consensus 224 n~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~ 303 (327)
||.|||+||+++|+++||++||+|++|||+ ++||+++|+++.+|+..|+++++|+++|.+++++++++...-.|
T Consensus 743 nt~Gla~an~laA~~aGad~vD~av~glg~------~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~~y~~ 816 (1146)
T PRK12999 743 DTSGNGLATYLAAAEAGVDIVDVAVASMSG------LTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVRPYYAP 816 (1146)
T ss_pred CCCchHHHHHHHHHHhCCCEEEecchhhcC------CcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHhHhhc
Confidence 999999999999999999999999999999 99999999999999999999999999999999999987644322
Q ss_pred h---hhhh--cccccc
Q psy12516 304 S---KVAK--ALPVKE 314 (327)
Q Consensus 304 ~---~~~~--~~~~~~ 314 (327)
. ..+- +++.|+
T Consensus 817 ~~~~~~~~~~~v~~~~ 832 (1146)
T PRK12999 817 FESGLKSPTTEVYLHE 832 (1146)
T ss_pred cCCCCCCCCcCeEEec
Confidence 1 2232 366676
No 45
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=99.97 E-value=1.8e-28 Score=231.91 Aligned_cols=211 Identities=18% Similarity=0.262 Sum_probs=193.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
...+++++.+.++.+.|+.+...+++++.++....+...++++++.|+++...+..+ .+.+++++.++++.+.+
T Consensus 77 ~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~~~------~~~~~~~~~~~~d~~~~ 150 (344)
T TIGR02146 77 VAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAEDT------FRSELADLLSIYETVGV 150 (344)
T ss_pred HHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEeeC------CCCCHHHHHHHHHHHHH
Confidence 345677888888889999999999999999999999999999999999988766653 47889999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|++.++++||.|.++|.++..++..+++..+.+++++|+|||+|+|++|+++|+.+|++++|+|++|||+ ++|
T Consensus 151 ~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~glG~------~~G 224 (344)
T TIGR02146 151 FGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGE------RNG 224 (344)
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEeeeeeC------CCC
Confidence 99999999999999999999999999999888889999999999999999999999999999999999999 889
Q ss_pred CccHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHhcCCCCCh---hhhhccccccc-------ccCccCccCCC
Q psy12516 263 NVATEDLVYMLEG-MGIETGADLTSLLRTGHYICGKLKKPSNS---KVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 263 n~~~e~~~~~l~~-~g~~~~~d~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|.+++.++..|.. .|+. .+|++.+.++++.+....+.++++ .+|.+.|.|++ +|||.+|++++
T Consensus 225 ~~~l~~~~~~L~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~h~~~~~~~~~~y~~~~ 298 (344)
T TIGR02146 225 ITPLGGILARLYYHTPMY-VYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGIHVKAILGNPRTYEFLP 298 (344)
T ss_pred CccHHHHHHHHHHhcCCC-ccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccchhHHHHhCCcccCCCCC
Confidence 9999999998886 5554 389999999999999999998874 79999999996 99999999986
No 46
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.95 E-value=4.1e-27 Score=230.44 Aligned_cols=255 Identities=20% Similarity=0.305 Sum_probs=222.1
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc-
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS- 88 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~- 88 (327)
+.+-+.||+ +++|.-.+|.+..++.+..|. ..-++.+..+.=.||...||++++.|.||||+|++.
T Consensus 534 ~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~----------~a~~lp~lfSlE~WGGATfDVamRFL~EdPWeRL~~l 603 (1149)
T COG1038 534 KAVLLTDTTFRDAHQSLLATRVRTHDLARIAPA----------TARALPQLFSLEMWGGATFDVAMRFLKEDPWERLERL 603 (1149)
T ss_pred cceeeeecchhhHHHHHHHHHHhhhhhhhhhHH----------HHHhhhhhhchhhhCCchHHHHHHHhccCHHHHHHHH
Confidence 578999999 999999999999999888762 111222333333478899999999999999987642
Q ss_pred ---------------C-----CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 89 ---------------G-----NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 89 ---------------g-----n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
. ..+++.++..+.+.+.+.|+|.+++|+++++ +++++..++..++.
T Consensus 604 Rk~~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLNw--------------v~~M~vaidAV~e~ 669 (1149)
T COG1038 604 RKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLNW--------------VEQMRVAIDAVREA 669 (1149)
T ss_pred HHhCCchHHHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEEeehhhcc--------------hhhhhhHHHHHHhc
Confidence 1 2568889998999999999999999999987 88899999999999
Q ss_pred CCeEEEEEeeeccC---CCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC
Q psy12516 149 GIRVRGYISCVVGC---PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT 225 (327)
Q Consensus 149 Gi~v~~~l~~~~g~---~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~ 225 (327)
|.-+++++++. |. |....++.+++.++++.+.++|+.++.++|+.|++.|...+.+++.||+.+ ++||++|+||+
T Consensus 670 gkv~EatiCYT-GDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHTHDT 747 (1149)
T COG1038 670 GKVAEATICYT-GDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDT 747 (1149)
T ss_pred CCeEEEEEEec-cccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEeccCC
Confidence 98888888873 32 223467999999999999999999999999999999999999999999998 57999999999
Q ss_pred cCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 226 YGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 226 ~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
-|.+++.+++|+++|+|.||+++..|.+ -+.++++-.++.+|.....++++|.+.+.+++.|++..-.
T Consensus 748 sG~~~at~~aA~~AGvDivD~A~~smsG------~TSQPsl~si~~al~~~~r~~~ld~~~~~~i~~YWe~vR~ 815 (1149)
T COG1038 748 SGNGVATYLAAVEAGVDIVDVAMASMSG------LTSQPSLNSIVAALAGTERDTGLDIEAVRELSFYWEAVRK 815 (1149)
T ss_pred CccHHHHHHHHHHcCCchhhhhhhhccC------CCCCccHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 8999999999999999888999999999999999998644
No 47
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=99.95 E-value=3.3e-27 Score=220.35 Aligned_cols=114 Identities=68% Similarity=1.092 Sum_probs=109.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.+|..++++|+|||+||+++|+++|+++|+++||++++|||||
T Consensus 201 ~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGec 280 (347)
T PLN02746 201 YVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLGGC 280 (347)
T ss_pred HHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccCC
Confidence 67899999999999999999999999999999999999986789999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
||.++++||+++|+++.+|+.+++++|+|.-.+.
T Consensus 281 Pfa~graGN~atE~lv~~L~~~G~~tgiDl~~L~ 314 (347)
T PLN02746 281 PYAKGASGNVATEDVVYMLNGLGVSTNVDLGKLM 314 (347)
T ss_pred CCCCCCCCChhHHHHHHHHHhcCCCCCCCHHHHH
Confidence 9999999999999999999999999999987765
No 48
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=99.95 E-value=4e-27 Score=216.31 Aligned_cols=114 Identities=63% Similarity=1.064 Sum_probs=109.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.+|++++++|+|||+|++++|+++|+++|+++||+|++|||||
T Consensus 159 ~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGec 238 (287)
T PRK05692 159 DVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGC 238 (287)
T ss_pred HHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCC
Confidence 67899999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
||.++++||+++|+++.+|+.+++++|+|.-.+.
T Consensus 239 pfa~g~aGN~~~E~lv~~L~~~g~~t~idl~~l~ 272 (287)
T PRK05692 239 PYAPGASGNVATEDVLYMLHGLGIETGIDLDKLV 272 (287)
T ss_pred CCCCCccccccHHHHHHHHHhcCCCCCcCHHHHH
Confidence 9999999999999999999999999999877655
No 49
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=99.94 E-value=1.4e-26 Score=211.56 Aligned_cols=114 Identities=60% Similarity=0.977 Sum_probs=109.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.+|++++++|+|||+||+++|+++|+++|+++||+|++|||+|
T Consensus 153 ~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgc 232 (274)
T cd07938 153 EVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGC 232 (274)
T ss_pred HHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCC
Confidence 67889999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
||.++++||+++|+++.+|+..++++|+|...+.
T Consensus 233 pfa~eraGN~~~E~lv~~L~~~g~~t~idl~~l~ 266 (274)
T cd07938 233 PFAPGATGNVATEDLVYMLEGMGIETGIDLDKLL 266 (274)
T ss_pred CCCCCccCCcCHHHHHHHHHhcCCCCCcCHHHHH
Confidence 9999999999999999999998999999887655
No 50
>KOG0369|consensus
Probab=99.94 E-value=2.7e-26 Score=220.87 Aligned_cols=256 Identities=23% Similarity=0.305 Sum_probs=219.3
Q ss_pred EEEecCCc---cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCcc-
Q psy12516 14 EISLGDTI---GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGAS- 88 (327)
Q Consensus 14 ~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~- 88 (327)
..-|.||+ -.+|.-.+|.+.-++....|.+ .|+..| +-.+ -||...||++++.|.||||+|.+.
T Consensus 559 g~llmDTT~RDAHQSLLATRVRthDl~~IaPyv-----ah~f~~------lfslE~WGGATFDVamRFLhEcPWeRL~~l 627 (1176)
T KOG0369|consen 559 GLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYV-----AHAFAG------LFSLENWGGATFDVAMRFLHECPWERLREL 627 (1176)
T ss_pred CceEeechhHHHHHHHHHHHhhhhhhhhcchHH-----HHHhhh------hhhhhhcCCchhhHHHHHHhcChHHHHHHH
Confidence 57789998 7788888888888888877732 232222 1233 378899999999999999987742
Q ss_pred --------------C-C-----CcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 89 --------------G-N-----VATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 89 --------------g-n-----~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
| | ..++.++..+-+.+.++|+|.+++|+++++ +.++.--++.+++.
T Consensus 628 RkliPNIPFQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsLN~--------------lpnl~lGmeAagkA 693 (1176)
T KOG0369|consen 628 RKLIPNIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSLNY--------------LPNLLLGMEAAGKA 693 (1176)
T ss_pred HHhCCCCcHHHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhhhh--------------hhhhhhhHhhhhcc
Confidence 1 1 357788888889999999999999999987 77777778899999
Q ss_pred CCeEEEEEeeecc--CCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCc
Q psy12516 149 GIRVRGYISCVVG--CPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTY 226 (327)
Q Consensus 149 Gi~v~~~l~~~~g--~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~ 226 (327)
|.-|++.+++.-- .|--..++.+++.++++++.++|..+++|+|+.|++.|+...-++..+|.++|++||++|+||+-
T Consensus 694 GGVVEAai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtHDts 773 (1176)
T KOG0369|consen 694 GGVVEAAICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTHDTS 773 (1176)
T ss_pred CCeEEEEEeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEeccCCc
Confidence 9999999988321 12223589999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCC
Q psy12516 227 GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKK 300 (327)
Q Consensus 227 g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~ 300 (327)
|-++|.-+++..+|+|.||+++..|.+ -+.++++-.+++.|+....+++++++.+.+.+.|+++.-..
T Consensus 774 GagVAsMlaca~AGADVVDvA~dSMSG------mTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~eysaYWe~~R~L 841 (1176)
T KOG0369|consen 774 GAGVASMLACALAGADVVDVAVDSMSG------MTSQPSMGALVASLQGTPLDTGLNLEHVREYSAYWEQMRLL 841 (1176)
T ss_pred cHHHHHHHHHHHcCCceeeeecccccc------cccCCchhhhhhhccCCcccCCCchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999998 89999999999999988899999999999999999986443
No 51
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=99.92 E-value=4.1e-24 Score=206.49 Aligned_cols=199 Identities=21% Similarity=0.251 Sum_probs=154.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.++ +++++|+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 158 ~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~- 235 (448)
T PRK12331 158 KLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAG- 235 (448)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCC-
Confidence 6789999999999999999999999999999999999987 99999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC-CeEEEEEeeec
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG-IRVRGYISCVV 160 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G-i~v~~~l~~~~ 160 (327)
++||+++|+++.+|+..++++|+|.-.+.. +++. ++ ++.++..+.+ +.... ....
T Consensus 236 -----gaGN~~tE~lv~~L~~~g~~tgidl~~L~~-~~~~-------------~~---~~r~~y~~~~~~~~~~--~~~~ 291 (448)
T PRK12331 236 -----GTSQPATESMVAALQDLGYDTGLDLEELSE-IAEY-------------FN---PIRDHYREEGILNPKV--KDVE 291 (448)
T ss_pred -----CcCCHhHHHHHHHHHhcCCCCCCCHHHHHH-HHHH-------------HH---HHHHHHHhhccCCccc--ccCC
Confidence 999999999999999999999999776552 2221 22 2222222322 21110 0000
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecC-CcCcHHHHHHHH
Q psy12516 161 GCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD-TYGQALANILTA 236 (327)
Q Consensus 161 g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn-~~g~a~an~l~a 236 (327)
..-+.++.+...+.++..|+.+.|... .=.+|.+.+..+++.++.+++..-+.. ---+|+-|.+.+
T Consensus 292 ~~v~~~~~PGG~~snl~~ql~~~g~~~----------~~~~v~~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nvl~g 358 (448)
T PRK12331 292 PKTLIYQVPGGMLSNLLSQLKEQGAED----------KYEEVLKEVPKVRADLGYPPLVTPLSQMVGTQALMNVISG 358 (448)
T ss_pred cCeeecCCCcchHhHHHHHHHHCCcHh----------HHHHHHHHHHHHHHHcCCCCeeCChhHHHHHHHHHHHhcc
Confidence 112346789999999999999988621 124677788899998887766665555 345788888753
No 52
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=99.92 E-value=3.7e-24 Score=207.15 Aligned_cols=197 Identities=19% Similarity=0.207 Sum_probs=153.6
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|+|+|+||+|.++|.+++++++.+++.++ +++++|+|||+|++++|+++|+++|+++||+|++|+|+
T Consensus 156 ~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~ 234 (467)
T PRK14041 156 LEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSM 234 (467)
T ss_pred HHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCC
Confidence 36789999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeec
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVV 160 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~ 160 (327)
++||+++|+++.+|+..++++|+|...+. .+++. ++.+++.-.. -+.+..- ..
T Consensus 235 ------gagN~atE~lv~~L~~~g~~tgiDl~~L~-~~~~~-------------~~~vr~~y~~-~~~~~~~------~~ 287 (467)
T PRK14041 235 ------GTSQPPFESMYYAFRENGKETDFDRKALK-FLVEY-------------FTKVREKYSE-YDVGMKS------PD 287 (467)
T ss_pred ------CCCChhHHHHHHHHHhcCCCCCcCHHHHH-HHHHH-------------HHHHHHHHhh-cCCCCCC------CC
Confidence 99999999999999999999999987755 22221 2222211110 0122210 00
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecC-CcCcHHHHHHHH
Q psy12516 161 GCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD-TYGQALANILTA 236 (327)
Q Consensus 161 g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn-~~g~a~an~l~a 236 (327)
..-+.++.+...+.++..|+.+.|. |++ .++.+.+..+++.++.+++..-+.. -.-+|+-|.+..
T Consensus 288 ~~v~~~q~PGG~~snl~~Ql~~~g~~~~~-----------~~v~~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~Nvl~g 354 (467)
T PRK14041 288 SRILVSQIPGGMYSNLVKQLKEQKMLHKL-----------DKVLEEVPRVRKDLGYPPLVTPTSQIVGVQAVLNVLTG 354 (467)
T ss_pred cCeeeCCCCcchHHHHHHHHHHCCcHhHH-----------HHHHHHHHHHHHHcCCCCcCCChhHHHHHHHHHhhcCh
Confidence 1123467899999999999999876 232 4677788899998877665555444 335677788864
No 53
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=99.91 E-value=6.9e-24 Score=205.79 Aligned_cols=196 Identities=20% Similarity=0.300 Sum_probs=156.5
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+++++++.++|+|+|+|+||+|.++|.+++++++.+++.+| ++++++|+|||+|++++|+++|+++|+++||+|++|||
T Consensus 158 ~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg 237 (499)
T PRK12330 158 VEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMS 237 (499)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeeccccc
Confidence 36889999999999999999999999999999999999996 79999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHH-H-HHHcCCeEEEEEe
Q psy12516 80 GCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVS-T-ALTNGIRVRGYIS 157 (327)
Q Consensus 80 ~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~-~-a~~~Gi~v~~~l~ 157 (327)
+ ++||+++|+++.+|+..+.++|+|...+.. +++. +..+++... + .+-.|..+
T Consensus 238 ~------~aGn~atE~vv~~L~~~g~~tgiDl~~L~~-i~~~-------------~~~vr~~y~~~~~~~~~~d~----- 292 (499)
T PRK12330 238 L------GPGHNPTESLVEMLEGTGYTTKLDMDRLLK-IRDH-------------FKKVRPKYKEFESKTTGVET----- 292 (499)
T ss_pred c------cccchhHHHHHHHHHhcCCCCCCCHHHHHH-HHHH-------------HHHHHHHHhcccccccCCCC-----
Confidence 9 999999999999999999999999877653 3332 222221111 1 01112221
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cCcHHHHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YGQALANILT 235 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g~a~an~l~ 235 (327)
..+.++.+...+.++..++.+.|. |+ =.++.+.+..+++.++.+++..-+..- --+|+-|.+.
T Consensus 293 ----~v~~~qiPGGm~snl~~Ql~~~g~~d~-----------~~ev~~e~~~Vr~~lG~~~~VTP~Sqivg~qA~~nv~~ 357 (499)
T PRK12330 293 ----EIFKSQIPGGMLSNMESQLKQQGAGDR-----------MDEVLEEVPRVRKDAGYPPLVTPSSQIVGTQAVFNVLM 357 (499)
T ss_pred ----ccccCCCCCCchhhHHHHHHHcChhhH-----------HHHHHHHHHHHHHHcCCCCeeCChhHHHHHHHHHHHHc
Confidence 223456888999999999999885 22 257778899999998887777666653 4578888876
Q ss_pred H
Q psy12516 236 A 236 (327)
Q Consensus 236 a 236 (327)
.
T Consensus 358 g 358 (499)
T PRK12330 358 G 358 (499)
T ss_pred C
Confidence 5
No 54
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=99.91 E-value=1.8e-23 Score=201.18 Aligned_cols=199 Identities=17% Similarity=0.214 Sum_probs=154.3
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|+|+|+||+|.++|.++.++++.+++. +++++++|+|||.|++++|+++|+++|+++||+|++|+|+
T Consensus 166 ~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~ 244 (468)
T PRK12581 166 LSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSE 244 (468)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCC
Confidence 367899999999999999999999999999999999884 5699999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC-CeEEEEEeee
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG-IRVRGYISCV 159 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G-i~v~~~l~~~ 159 (327)
++||+++|+++.+|+..++++|+|...+... ++ .++++.++....| ++.. ....
T Consensus 245 ------gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~-a~----------------~~~~vr~~y~~~~~~~~~--~~~~ 299 (468)
T PRK12581 245 ------GTSQPATESMYLALKEAGYDITLDETLLEQA-AN----------------HLRQARQKYLADGILDPS--LLFP 299 (468)
T ss_pred ------CcCChhHHHHHHHHHhcCCCCCcCHHHHHHH-HH----------------HHHHHHHHhcccccCCCc--cCCC
Confidence 9999999999999999999999998765532 22 1222222222212 1100 0000
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cCcHHHHHHHH
Q psy12516 160 VGCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YGQALANILTA 236 (327)
Q Consensus 160 ~g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g~a~an~l~a 236 (327)
...-+.++.+...+.++..|+.+.|. |+ =.+|.+.+..+++.++.+++..-+..- --+|+.|.+..
T Consensus 300 d~~v~~hqiPGGm~snl~~Ql~~~g~~dr-----------~~ev~~e~~~V~~~lG~p~~VTP~Sqivg~qA~~nV~~g 367 (468)
T PRK12581 300 DPRTLQYQVPGGMLSNMLSQLKQANAESK-----------LEEVLAEVPRVRKDLGYPPLVTPLSQMVGTQAAMNVILG 367 (468)
T ss_pred CcceeeCCCCcchHHHHHHHHHHCCcHhh-----------HHHHHHHHHHHHHHcCCCCEECChhHHHHHHHHHHHHcC
Confidence 00113457899999999999999987 33 257778889999998887777665553 35778887754
No 55
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=99.90 E-value=5.3e-24 Score=203.14 Aligned_cols=157 Identities=27% Similarity=0.451 Sum_probs=127.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.++|+++|+|+||+|.++|++++++++.+++.+ ++++++|+|||+|||++|+++|+++|+++||+|++||||
T Consensus 149 ~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe- 226 (378)
T PRK11858 149 EFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGE- 226 (378)
T ss_pred HHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccc-
Confidence 678889999999999999999999999999999999988 589999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhh-hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHH---HHHHcCCeEEEEEe
Q psy12516 82 PYARGASGNVATEDLVYMLE-GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVS---TALTNGIRVRGYIS 157 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~-~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~---~a~~~Gi~v~~~l~ 157 (327)
++||+++|+++.+|+ ..++++|+|.-.+. .+++...+. .+.. +...++++. +++++|+|+.+.+.
T Consensus 227 -----raGNa~lE~vv~~L~~~~g~~~~idl~~l~-~~s~~v~~~-~~~~----~~~~~pivG~~~F~h~sGiH~~gi~k 295 (378)
T PRK11858 227 -----RAGNAALEEVVMALKYLYGIDLGIDTERLY-ELSRLVSKA-SGIP----VPPNKAIVGENAFAHESGIHVDGVLK 295 (378)
T ss_pred -----cccCccHHHHHHHHHHHhCCCCCcCHHHHH-HHHHHHHHH-hCcC----CCCCCccccchhhhhhccccHHHHhC
Confidence 999999999999998 57899999987766 334433222 2222 222344443 68999999987766
Q ss_pred eeccCCCCCCCChHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~ 174 (327)
.. ..|+ .++|+.+.
T Consensus 296 ~~--~~Ye-~~~P~~vG 309 (378)
T PRK11858 296 NP--LTYE-PFLPEEVG 309 (378)
T ss_pred Cc--cccc-ccCHHHcC
Confidence 53 1233 46776555
No 56
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=99.90 E-value=2.6e-23 Score=190.42 Aligned_cols=108 Identities=24% Similarity=0.415 Sum_probs=102.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+++|+|+||+|.++|+++.++++.+++.+|++++++|+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 151 ~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe- 229 (280)
T cd07945 151 QLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGE- 229 (280)
T ss_pred HHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc-
Confidence 6788999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhh-hhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLE-GKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~-~~~~~~Gid~i~l~ 115 (327)
++||+++|+++.+|+ .+++++|+|...+.
T Consensus 230 -----~aGN~~~E~~v~~L~~~~g~~t~idl~~l~ 259 (280)
T cd07945 230 -----RAGNAPLASVIAVLKDKLKVKTNIDEKRLN 259 (280)
T ss_pred -----cccCccHHHHHHHHHHhcCCCcCcCHHHHH
Confidence 999999999999995 47999999877655
No 57
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.90 E-value=6.6e-23 Score=203.27 Aligned_cols=199 Identities=18% Similarity=0.187 Sum_probs=154.1
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|+|+|+||+|.++|.+++++++.+++.++ +++++|+|||.|++++|+++|+++|+++||++++|||+
T Consensus 157 ~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg 235 (596)
T PRK14042 157 LELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSG 235 (596)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccC
Confidence 36789999999999999999999999999999999999986 99999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeec
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVV 160 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~ 160 (327)
++||+++|+++.+|+..++++|+|...+.. +++. +..+++.-... +.+.. ...
T Consensus 236 ------~tGn~~tE~lv~~L~~~g~~tgidl~~l~~-~~~~-------------~~~vr~~y~~~-~~~~~------~~~ 288 (596)
T PRK14042 236 ------GASHPPTEALVAALTDTPYDTELDLNILLE-IDDY-------------FKAVRKKYSQF-ESEAQ------NID 288 (596)
T ss_pred ------CCCcHhHHHHHHHHHhcCCCCCCCHHHHHH-HHHH-------------HHHHHHHHhhc-CCccc------cCC
Confidence 789999999999999999999998876542 2221 22222111110 11111 000
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecC-CcCcHHHHHHHHHH
Q psy12516 161 GCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD-TYGQALANILTAME 238 (327)
Q Consensus 161 g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn-~~g~a~an~l~a~~ 238 (327)
..-+.++.+...+.++..|+.+.|. |+ =.++.+.+..+++.+..+++..-+.. -.-+|+-|.+..-+
T Consensus 289 ~~v~~hq~PGG~~snl~~Ql~~~g~~d~-----------~~ev~~e~~~v~~~lG~~~~VTP~Sqivg~qA~~Nvl~g~r 357 (596)
T PRK14042 289 PRVQLYQVPGGMISNLYNQLKEQNALDK-----------MDAVHKEIPRVRKDLGYPPLVTPTSQVVGTQAVINVLTGER 357 (596)
T ss_pred cceeecCCCcchhhHHHHHHHHCCcHhH-----------HHHHHHHHHHHHHHcCCCCeECCcCcEEEEEehhhccChhh
Confidence 0113457899999999999999875 22 24677788899998877665555544 34577888887543
No 58
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=99.90 E-value=2.8e-23 Score=188.90 Aligned_cols=107 Identities=25% Similarity=0.374 Sum_probs=102.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|++.|+|+||+|.++|++++++++.+++.+| +++++|+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 143 ~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~- 220 (259)
T cd07939 143 EFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGE- 220 (259)
T ss_pred HHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccc-
Confidence 6788999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhh-hcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGK-SMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~-~~~~Gid~i~l~ 115 (327)
++||+++|+++.+++.+ +.++|+|...+.
T Consensus 221 -----~aGN~~tE~lv~~l~~~~g~~~~idl~~l~ 250 (259)
T cd07939 221 -----RAGNAALEEVVMALKHLYGRDTGIDTTRLP 250 (259)
T ss_pred -----cccCcCHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 99999999999999987 999999877655
No 59
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=99.90 E-value=3e-23 Score=189.13 Aligned_cols=108 Identities=28% Similarity=0.423 Sum_probs=102.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|.|+|+||+|.++|++++++++.+++.+|.+++++|+|||+|+|++|+++|+++|+++||+|++|||+
T Consensus 145 ~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~- 223 (263)
T cd07943 145 EQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGA- 223 (263)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccC-
Confidence 6788999999999999999999999999999999999998559999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
++||+++|+++.+|+..++++++|...+.
T Consensus 224 -----~aGN~~~E~lv~~L~~~g~~~~idl~~l~ 252 (263)
T cd07943 224 -----GAGNTPLEVLVAVLERMGIETGIDLYKLM 252 (263)
T ss_pred -----CcCCccHHHHHHHHHhcCCCCCCCHHHHH
Confidence 89999999999999888888888877665
No 60
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.90 E-value=6.5e-23 Score=204.01 Aligned_cols=196 Identities=20% Similarity=0.263 Sum_probs=153.9
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|+|+|+||+|.++|++++++++.+++.++ +++++|+|||.|++++|+++|+++|+++||+|++|||+
T Consensus 152 ~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~ 230 (582)
T TIGR01108 152 LDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSMSG 230 (582)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeccccccc
Confidence 36789999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-H---cCCeEEEEE
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTAL-T---NGIRVRGYI 156 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~-~---~Gi~v~~~l 156 (327)
++||+++|+++.+|+..+.++|+|.-.+... ++. ++.+++ .|.+ + .|....+
T Consensus 231 ------~tGn~~le~vv~~L~~~g~~tgid~~~L~~l-~~~-------------~~~v~~--~Y~~~~~~~~~~~~~v-- 286 (582)
T TIGR01108 231 ------GTSHPPTETMVAALRGTGYDTGLDIELLLEI-AAY-------------FREVRK--KYSQFEGQLKGPDSRI-- 286 (582)
T ss_pred ------cccChhHHHHHHHHHhcCCCcccCHHHHHHH-HHH-------------HHHHHH--HhhcCCCcccCCCccE--
Confidence 9999999999999999999999987765522 222 223322 1211 1 1222222
Q ss_pred eeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cCcHHHHHHH
Q psy12516 157 SCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YGQALANILT 235 (327)
Q Consensus 157 ~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g~a~an~l~ 235 (327)
+.+..+...+.++..++.+.|.. | .=.++.+.++.+++.+..+++..-+..- .-+|+-|.+.
T Consensus 287 -------~~~e~pGG~~snl~~ql~~~g~~-----~-----~~~~vl~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nvl~ 349 (582)
T TIGR01108 287 -------LVAQVPGGMLSNLESQLKEQNAL-----D-----KLDEVLEEIPRVREDLGYPPLVTPTSQIVGTQAVLNVLT 349 (582)
T ss_pred -------EEEcCCCchHHHHHHHHHHCCCH-----H-----HHHHHHHHHHHHHHHcCCCCeECCccHHHHHHHHHhhcC
Confidence 23467889999999999999874 1 1235666678888888776666655553 4578888886
Q ss_pred HHH
Q psy12516 236 AME 238 (327)
Q Consensus 236 a~~ 238 (327)
.-+
T Consensus 350 ~~r 352 (582)
T TIGR01108 350 GER 352 (582)
T ss_pred HHh
Confidence 543
No 61
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=99.90 E-value=7.8e-24 Score=201.32 Aligned_cols=157 Identities=24% Similarity=0.347 Sum_probs=125.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|.|+|+||+|.++|++++++++.+++.++ +++++|+|||+|||++|+++|+++|+++||+|++||||
T Consensus 146 ~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe- 223 (365)
T TIGR02660 146 ELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE- 223 (365)
T ss_pred HHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc-
Confidence 5788899999999999999999999999999999999886 89999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHh-hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEEEEe
Q psy12516 82 PYARGASGNVATEDLVYML-EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRGYIS 157 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l-~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~~l~ 157 (327)
++||+++|+++.+| ...+.++++|.-.+. .+++...+ ..+... ..-++++ .+++++|+|+.+.+.
T Consensus 224 -----raGN~~lE~lv~~L~~~~g~~~~idl~~l~-~~s~~v~~-~~~~~~----~~~~p~vG~~~f~h~sGiH~~~i~k 292 (365)
T TIGR02660 224 -----RAGNAALEEVAMALKRLLGRDTGIDTSRLP-ALSQLVAR-ASGRPI----PPQKPVVGESVFTHESGIHVDGLLK 292 (365)
T ss_pred -----ccccCCHHHHHHHHHHhcCCCCCcCHHHHH-HHHHHHHH-HhCCCC----CCCCCcccHhHHHhccchhHHHHhC
Confidence 99999999999999 667899999887765 33443322 122221 1123333 368899999877666
Q ss_pred eeccCCCCCCCChHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~ 174 (327)
.. ..|+ .++|+.+.
T Consensus 293 ~~--~~Ye-~~~P~~vG 306 (365)
T TIGR02660 293 DP--RTYE-PFDPELVG 306 (365)
T ss_pred Cc--ccCC-CcCHHHcC
Confidence 53 1233 36666444
No 62
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=99.90 E-value=1.1e-23 Score=199.88 Aligned_cols=157 Identities=27% Similarity=0.444 Sum_probs=127.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|.|+|+||+|.++|.+++++++.+++.++ ++++||+|||+||+++|+++|+++|+++||+|++|||+
T Consensus 145 ~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe- 222 (363)
T TIGR02090 145 KVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE- 222 (363)
T ss_pred HHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecccc-
Confidence 5788899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEEEEe
Q psy12516 82 PYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRGYIS 157 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~~l~ 157 (327)
++||+++|+++.+|+. .+.++++|.-.+. .+++...+. .+.. +...++++ .+++++|+|+.+.+.
T Consensus 223 -----raGN~~lE~vv~~L~~~~g~~~~idl~~l~-~~~~~~~~~-~~~~----~~~~~pivG~~~f~h~sGiH~~~i~k 291 (363)
T TIGR02090 223 -----RAGNAALEEVVMALKYLYGVKTKIKTEKLY-ETSRLVSEL-SGVK----VPPNKAIVGENAFAHESGIHVDGVIE 291 (363)
T ss_pred -----ccccccHHHHHHHHHHhhCCCCCcCHHHHH-HHHHHHHHH-HCcC----CCCCCCchhHHHHHHhcchhHHHHcC
Confidence 9999999999999987 7999999987765 334433222 2222 11223343 368999999887766
Q ss_pred eeccCCCCCCCChHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~ 174 (327)
... .|+ .++|+.+.
T Consensus 292 ~~~--~Ye-~~~P~~vG 305 (363)
T TIGR02090 292 NPL--TYE-PISPEVVG 305 (363)
T ss_pred Ccc--cCC-CCCHHHcC
Confidence 531 233 46776555
No 63
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=99.89 E-value=3.3e-23 Score=202.02 Aligned_cols=158 Identities=23% Similarity=0.435 Sum_probs=127.7
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcC---CCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~---~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
++++++.++|+|+|+|+||+|.++|+++.++++.+++.+| ++++++|+|||+|||++|+++|+++|+++||+|++||
T Consensus 243 ~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~Gi 322 (503)
T PLN03228 243 KILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEVTINGI 322 (503)
T ss_pred HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEEecccc
Confidence 5788899999999999999999999999999999999886 4789999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhh------hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcC
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEG------KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNG 149 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~------~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~G 149 (327)
|| |+||+++|+++.+|+. .++++++|.-.+. .+++...+. .+... ...++++ .+++++|
T Consensus 323 GE------RaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~-~ls~~V~~~-~g~~i----~~~kPivG~naF~heSG 390 (503)
T PLN03228 323 GE------RSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIM-ATSKMVQEY-TGMYV----QPHKPIVGANCFVHESG 390 (503)
T ss_pred cc------ccCCccHHHHHHHHHhcccccccCCCCCcCHHHHH-HHHHHHHHH-hCCCC----CCCCCcccHHHHHhccc
Confidence 99 9999999999999876 3567788876655 444443332 23222 2234444 4789999
Q ss_pred CeEEEEEeeeccCCCCCCCChHHHH
Q psy12516 150 IRVRGYISCVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~r~~~e~l~ 174 (327)
+|+.+.+.... .|+ .++|+.+.
T Consensus 391 IH~dgilK~p~--tYe-~~~Pe~vG 412 (503)
T PLN03228 391 IHQDGILKNRS--TYE-ILSPEDIG 412 (503)
T ss_pred hhHHHHhCCcc--ccc-CCCHHHhC
Confidence 99988777642 233 47787765
No 64
>PLN02321 2-isopropylmalate synthase
Probab=99.89 E-value=4.5e-23 Score=205.45 Aligned_cols=158 Identities=22% Similarity=0.440 Sum_probs=126.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
++++.+.++|+++|+|+||+|.++|+++.++++.+++.+|. +++++|+|||+|||+||+++|+++|+++||+|++||
T Consensus 244 ~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGl 323 (632)
T PLN02321 244 RILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGI 323 (632)
T ss_pred HHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 67889999999999999999999999999999999999874 669999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhh------hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHH---HHHHcC
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEG------KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVS---TALTNG 149 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~------~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~---~a~~~G 149 (327)
|| |+||+++|+++.+|+. .++.+|+|.-.+. .+++...+. .++. +...++++. +++++|
T Consensus 324 GE------RaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~L~-~~s~~V~~~-~g~~----v~~~kPiVG~naFaheSG 391 (632)
T PLN02321 324 GE------RAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHIT-PTSKMVSEY-TGMQ----VQPHKAIVGANAFAHESG 391 (632)
T ss_pred cc------cccCccHHHHHHHHHhccCccccCcccccCHHHHH-HHHHHHHHH-hCcC----CCCCcccccccceehhcC
Confidence 99 9999999999999875 3577888876655 444443322 3333 222345553 689999
Q ss_pred CeEEEEEeeeccCCCCCCCChHHHH
Q psy12516 150 IRVRGYISCVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~r~~~e~l~ 174 (327)
+|+.+.+.... .|+ .++|+.+.
T Consensus 392 IH~dgvlk~~~--tYe-~i~Pe~VG 413 (632)
T PLN02321 392 IHQDGMLKHKG--TYE-IISPEDIG 413 (632)
T ss_pred ccHHHHccCcc--ccc-ccCHHHhC
Confidence 99988776532 233 46666664
No 65
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=99.89 E-value=6.8e-23 Score=187.72 Aligned_cols=107 Identities=29% Similarity=0.409 Sum_probs=101.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.++.++++.+++.++ +++++|+|||+|++++|+++|+++|+++||+|++||||
T Consensus 153 ~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~- 230 (275)
T cd07937 153 KLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSG- 230 (275)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccC-
Confidence 5788999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
++||+++|+++.+|+.++.++++|...+.
T Consensus 231 -----~aGN~~~E~l~~~L~~~g~~~~~dl~~l~ 259 (275)
T cd07937 231 -----GTSQPSTESMVAALRGTGRDTGLDLEKLE 259 (275)
T ss_pred -----CcCChhHHHHHHHHHccCCCCCCCHHHHH
Confidence 89999999999999988888888876644
No 66
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=99.89 E-value=4.5e-23 Score=188.46 Aligned_cols=108 Identities=30% Similarity=0.542 Sum_probs=102.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC--CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA--DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~--~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
++++++.++|++.|+|+||+|.++|++++++++.+++.+|+ ++++||+|||+|++++|+++|+++|+++||+|+.|||
T Consensus 147 ~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG 226 (268)
T cd07940 147 EVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG 226 (268)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccc
Confidence 57889999999999999999999999999999999999986 8999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCcHHHHHHHhhhhh----cccCcchhhhh
Q psy12516 80 GCPYARGASGNVATEDLVYMLEGKS----MQCGVKEIAVF 115 (327)
Q Consensus 80 ~~p~~~~~~gn~~~e~v~~~l~~~~----~~~Gid~i~l~ 115 (327)
+ ++||+++|+++.+|..++ +++|+|..++.
T Consensus 227 ~------~aGN~~tE~lv~~L~~~~~~~~~~t~idl~~l~ 260 (268)
T cd07940 227 E------RAGNAALEEVVMALKTRYDYYGVETGIDTEELY 260 (268)
T ss_pred c------ccccccHHHHHHHHHhcccccCCCCCcCHHHHH
Confidence 9 999999999999998876 88888877655
No 67
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=99.89 E-value=8.5e-23 Score=186.03 Aligned_cols=109 Identities=23% Similarity=0.355 Sum_probs=101.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
++++++.++|++.|+|+||+|.++|++++++++.+++.++. ++++||+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 142 ~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~ 221 (266)
T cd07944 142 ELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGR 221 (266)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCC
Confidence 67889999999999999999999999999999999999875 89999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhh
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFAS 117 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~ 117 (327)
++||+++|+++..|+.+ .++++|...+...
T Consensus 222 ------~aGN~~~E~~v~~l~~~-~~~~~dl~~l~~~ 251 (266)
T cd07944 222 ------GAGNLPTELLLDYLNNK-FGKKYNLEPVLEL 251 (266)
T ss_pred ------CcCcHHHHHHHHHHHHh-hccCCCHHHHHHH
Confidence 99999999999999887 7888887776643
No 68
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=99.89 E-value=7.7e-23 Score=191.88 Aligned_cols=113 Identities=27% Similarity=0.424 Sum_probs=106.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhc-CCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~-~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
++++++.++|++.|+++||+|.++|++++++++.+++.+ |+++++||+|||+|++++|+++|+++|+++||+|+.|||+
T Consensus 148 ~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~ 227 (337)
T PRK08195 148 EQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGA 227 (337)
T ss_pred HHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcc
Confidence 678899999999999999999999999999999999998 5799999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
++||+++|+++..++++++++|+|...+.....+
T Consensus 228 ------~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~ 261 (337)
T PRK08195 228 ------GAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAED 261 (337)
T ss_pred ------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999999887755444
No 69
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.89 E-value=2.6e-22 Score=199.88 Aligned_cols=227 Identities=22% Similarity=0.264 Sum_probs=162.8
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.++ ++|++|+|||.|++++|+++|+++|+++||+|++|||+
T Consensus 159 ~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG~- 236 (593)
T PRK14040 159 DLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMSM- 236 (593)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccccc-
Confidence 6789999999999999999999999999999999999984 89999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH--HHcCCeEEEEEeee
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA--LTNGIRVRGYISCV 159 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a--~~~Gi~v~~~l~~~ 159 (327)
++||+++|+++.+|+..+.++|+|.-.+. .+++. +..+++.-+.. .-.|....+
T Consensus 237 -----~~Gn~~le~vv~~L~~~~~~~gidl~~l~-~is~~-------------~~~v~~~Y~~~~~~~~~~~~~v----- 292 (593)
T PRK14040 237 -----TYGHSATETLVATLEGTERDTGLDILKLE-EIAAY-------------FREVRKKYAKFEGQLKGVDSRI----- 292 (593)
T ss_pred -----cccchhHHHHHHHHHhcCCCcCCCHHHHH-HHHHH-------------HHHHHHHhccCCcccccCcccE-----
Confidence 99999999999999988888988875533 23322 22221111110 001222221
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cCcHHHHHHHHHH
Q psy12516 160 VGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YGQALANILTAME 238 (327)
Q Consensus 160 ~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g~a~an~l~a~~ 238 (327)
+.+..+...+.++..++.+.|.. -.=.++.+.++.+++.++.+++..-+..- .-+|+-|.+..-+
T Consensus 293 ----~~~e~PGG~~Snl~~ql~~~g~~----------~~~~evl~e~~~v~~~lG~~~~VTP~Sqivg~~A~~N~l~~~r 358 (593)
T PRK14040 293 ----LVAQVPGGMLTNMESQLKEQGAA----------DKLDEVLAEIPRVREDLGFIPLVTPTSQIVGTQAVLNVLTGER 358 (593)
T ss_pred ----EEEcCCCchHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHcCCCCeECChhHHHHHHHHHhcCChHh
Confidence 23467889999999999999875 01235666778888888776666655543 3567778876533
Q ss_pred hcC---ceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 239 FGI---SVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 239 ~G~---~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
.-. ..++--.+-+|. ..|-.+-|-.-..|+
T Consensus 359 ~~~~~~~v~~~~~G~~G~------~p~~~~~~~~~~~l~ 391 (593)
T PRK14040 359 YKTITKETAGVLKGEYGA------TPAPVNAELQARVLE 391 (593)
T ss_pred heeCCHHHHHHhCcCCCC------CCCCCCHHHHHHHhC
Confidence 221 113333444555 244455553334554
No 70
>PRK00915 2-isopropylmalate synthase; Validated
Probab=99.89 E-value=2.5e-23 Score=205.40 Aligned_cols=146 Identities=27% Similarity=0.485 Sum_probs=121.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
++++.+.++|+++|+|+||+|.++|+++.++++.+++.+|. +++++|+|||+|||+||+++|+++|+++||+|++||
T Consensus 153 ~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~Gl 232 (513)
T PRK00915 153 RVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGI 232 (513)
T ss_pred HHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeecc
Confidence 67888999999999999999999999999999999999885 899999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhhh----hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCe
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEGK----SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIR 151 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~~----~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~ 151 (327)
|| |+||+++|+++..|+.+ ++++++|.-.+. .+++...+. .+... ..-++++ .+++++|+|
T Consensus 233 GE------RaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~-~~s~~v~~~-~~~~~----~~~~PivG~~aF~h~sGiH 300 (513)
T PRK00915 233 GE------RAGNAALEEVVMALKTRKDIYGVETGINTEEIY-RTSRLVSQL-TGMPV----QPNKAIVGANAFAHESGIH 300 (513)
T ss_pred cc------cccCccHHHHHHHHHhhhcccCCCCCcCHHHHH-HHHHHHHHH-hCCCC----CCCCCccChhHHHhccchh
Confidence 99 99999999999998765 788888876655 444443322 22221 2233444 478999999
Q ss_pred EEEEEeee
Q psy12516 152 VRGYISCV 159 (327)
Q Consensus 152 v~~~l~~~ 159 (327)
+.+.+...
T Consensus 301 ~dgi~k~~ 308 (513)
T PRK00915 301 QDGVLKNR 308 (513)
T ss_pred HHHHcCCc
Confidence 88776653
No 71
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=99.89 E-value=1e-22 Score=190.54 Aligned_cols=114 Identities=24% Similarity=0.386 Sum_probs=106.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
++++++.++|++.|+++||+|.++|+++.++++.+++.++ +++++||+|||+|++++|+++|+++|+++||+|+.|||+
T Consensus 147 ~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~ 226 (333)
T TIGR03217 147 EQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGA 226 (333)
T ss_pred HHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccc
Confidence 6788999999999999999999999999999999999986 589999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHH
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEM 121 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~ 121 (327)
++||+++|.++.+++++++++|+|...+.....+.
T Consensus 227 ------~aGN~~~E~lv~~l~~~g~~tgidl~~l~~~a~~~ 261 (333)
T TIGR03217 227 ------GAGNAPLEVFVAVLDRLGWNTGCDLFKLMDAAEDI 261 (333)
T ss_pred ------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999998877655544
No 72
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.88 E-value=7.1e-22 Score=197.19 Aligned_cols=195 Identities=21% Similarity=0.259 Sum_probs=149.8
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|.|+|+||+|.++|.+++++++.+++.++ +++++|+|||.|++++|+++|+++|+++||+|++|+|+
T Consensus 157 ~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~ 235 (592)
T PRK09282 157 VELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAF 235 (592)
T ss_pred HHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCC
Confidence 36789999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH--HHcCCeEEEEEee
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA--LTNGIRVRGYISC 158 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a--~~~Gi~v~~~l~~ 158 (327)
++||+++|+++.+|+..+.++++|.-.+. .+++. ++.+++.-+.. ...|....+
T Consensus 236 ------~agn~~~e~vv~~L~~~g~~~~idl~~l~-~~s~~-------------~~~~~~~y~~~~~~~~~~~~~v---- 291 (592)
T PRK09282 236 ------GTSQPPTESMVAALKGTPYDTGLDLELLF-EIAEY-------------FREVRKKYKQFESEFTIVDTRV---- 291 (592)
T ss_pred ------CcCCHhHHHHHHHHHhCCCCCccCHHHHH-HHHHH-------------HHHHHHHhhcCCCccccCCccE----
Confidence 99999999999999988888888876544 22221 22222111110 001121111
Q ss_pred eccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cCcHHHHHHH
Q psy12516 159 VVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YGQALANILT 235 (327)
Q Consensus 159 ~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g~a~an~l~ 235 (327)
+.+..+...+.++..++.+.|... .=.++.+.++.+++.++.+++..-+..- .-+|+-|.+.
T Consensus 292 -----~~~~~pGg~~snl~~q~~~~g~~d----------~~~~vl~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nv~~ 354 (592)
T PRK09282 292 -----LIHQVPGGMISNLVSQLKEQNALD----------KLDEVLEEIPRVREDLGYPPLVTPTSQIVGTQAVLNVLT 354 (592)
T ss_pred -----EEEcCCCcHHHHHHHHHHHCCcHH----------HHHHHHHHHHHHHHHcCCCCeECChhHhHHHHHHHHHHc
Confidence 234678899999999999998721 2346677788888888776666655543 3567777554
No 73
>PRK09389 (R)-citramalate synthase; Provisional
Probab=99.88 E-value=6.1e-23 Score=201.09 Aligned_cols=157 Identities=25% Similarity=0.458 Sum_probs=125.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.++|+|.|+|+||+|.++|.++.++++.+++..+ +++++|+|||+|||+||+++|+++|+++||+|++|+||
T Consensus 147 ~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGE- 224 (488)
T PRK09389 147 ELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGE- 224 (488)
T ss_pred HHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccc-
Confidence 5778889999999999999999999999999999999876 89999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEEEEe
Q psy12516 82 PYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRGYIS 157 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~~l~ 157 (327)
|+||+++|+++.+|+. .++++++|.-.+. .+++...+. .++.. ..-++++ .+++++|+|+.+.+.
T Consensus 225 -----RaGNa~lE~lv~~L~~~~g~~~~idl~~l~-~~s~~v~~~-~~~~v----~~~~pivG~~aF~h~sGiH~dgi~k 293 (488)
T PRK09389 225 -----RAGNASLEEVVMALKHLYDVETGIKLEELY-ELSRLVSRL-TGIPV----PPNKAIVGENAFAHESGIHVDGLLK 293 (488)
T ss_pred -----cccCccHHHHHHHHHhhcCCCCCcCHHHHH-HHHHHHHHH-hCCCC----CCCCCcccHhHHHhcchhhHHHHhC
Confidence 9999999999999987 4888999877665 444443322 23222 2233444 478999999887766
Q ss_pred eeccCCCCCCCChHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~ 174 (327)
.. .+|+ .++|+.+.
T Consensus 294 ~~--~~Ye-~~~P~~vG 307 (488)
T PRK09389 294 DT--ETYE-PITPETVG 307 (488)
T ss_pred Cc--ccCC-CCCHHHcC
Confidence 53 2333 34554433
No 74
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=99.88 E-value=7.7e-23 Score=200.81 Aligned_cols=158 Identities=25% Similarity=0.472 Sum_probs=125.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
++++.+.++|+++|+|+||+|.++|+++.++++.+++.+|. +++++|+|||+||++||+++|+++|+++||+|++||
T Consensus 150 ~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~Gl 229 (494)
T TIGR00973 150 RIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGI 229 (494)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecc
Confidence 67889999999999999999999999999999999999873 679999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhh----hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCe
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEG----KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIR 151 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~----~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~ 151 (327)
|| |+||+++|+++.+|.. .++++++|.-.+. .+++...+. .+... ..-++++ .+++++|+|
T Consensus 230 GE------RaGNa~le~vv~~L~~~~~~~g~~~~idl~~L~-~~s~~v~~~-~g~~v----~~~~PivG~~aF~h~sGiH 297 (494)
T TIGR00973 230 GE------RAGNAALEEVVMALKVRKDFLGVETGINTKEIY-RTSRLVSQL-TGMPV----QPNKAIVGDNAFAHESGIH 297 (494)
T ss_pred cc------cccCccHHHHHHHHHHhcccCCCCCCcCHHHHH-HHHHHHHHH-hCCCC----CCCCCcccHhHHHhccchh
Confidence 99 9999999999998874 3778888877655 444433222 23322 2234444 478999999
Q ss_pred EEEEEeeeccCCCCCCCChHHHH
Q psy12516 152 VRGYISCVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 152 v~~~l~~~~g~~~~~r~~~e~l~ 174 (327)
+.+.+... .+|+ .++|+.+.
T Consensus 298 ~dgi~k~~--~~Ye-~~~Pe~vG 317 (494)
T TIGR00973 298 QDGVLKNK--ETYE-IMSPEDIG 317 (494)
T ss_pred HHHHhCCc--cccc-CCCHHHcC
Confidence 88777653 2333 35555444
No 75
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=99.88 E-value=2.8e-23 Score=198.21 Aligned_cols=196 Identities=26% Similarity=0.406 Sum_probs=141.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+.++.+.++|+++|+++||+|.++|..++++++++++.+| ..++++|+|||+|||+||+++|+++|+++||+|++|+||
T Consensus 150 ~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiGE 229 (409)
T COG0119 150 EVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIGE 229 (409)
T ss_pred HHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEeccccee
Confidence 5678888899999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhh---hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEE
Q psy12516 81 CPYARGASGNVATEDLVYMLEG---KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRG 154 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~---~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~ 154 (327)
|+||.++++++.++.- .+.++++|...+. .+|+...+. .++.++ ..++++ .+++++|+|+.+
T Consensus 230 ------RaGna~l~~v~~~l~~~~~~~~~~~idl~~l~-~~s~~v~~~-~~~~v~----~n~pivG~naFah~sGIH~dg 297 (409)
T COG0119 230 ------RAGNAALEEVVLALALRKDYGVDTGIDLEKLT-EASRLVERL-TGIPVP----PNKPIVGENAFAHESGIHQDG 297 (409)
T ss_pred ------ccccccHHHHHHHHHHHhhcCCccCCCHHHHH-HHHHHHHHH-hCCCCC----CCCCchhhHHHHhhcchhHHH
Confidence 9999999999866543 4568888887765 334433222 232221 223444 378999999987
Q ss_pred EEeeeccCCCCCCCChHHHHHHHHHHHH---cCcCEEE-ecCCCCc-cCHHHHHHHHHHHHHh
Q psy12516 155 YISCVVGCPYEGAVPPHNVTRVATALYK---MGCYEIS-LGDTIGV-GTPGTMRLMLEDVLTV 212 (327)
Q Consensus 155 ~l~~~~g~~~~~r~~~e~l~~~~~~~~~---~g~~~i~-l~Dt~G~-~~P~~~~~~~~~~~~~ 212 (327)
.+.... .|+ .++|+.+..-.+.+.. .|-..+. .-...|. ..|+++..++..+|+.
T Consensus 298 vlkn~~--tYE-~i~Pe~VG~~r~~vi~~~~sg~~~~~~~l~~~g~~~~~~~~~~~~~~vk~l 357 (409)
T COG0119 298 VLKNPE--TYE-PIDPEDVGRRRRIVIGGKHSGRKAVKAKLEELGIELDEEELDKLFSRVKEL 357 (409)
T ss_pred HhhCHh--hcC-CCCHHHcCCeeeeEeeccccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 777643 122 5677766543332221 0110000 1122232 2377788888777764
No 76
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=99.88 E-value=2e-22 Score=181.07 Aligned_cols=97 Identities=35% Similarity=0.534 Sum_probs=86.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|.|+|+||+|.++|.+++++++.+++.+|..+++||+|||+|++++|+++|+++|+++||+|+.|||+
T Consensus 141 ~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~- 219 (237)
T PF00682_consen 141 ELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGE- 219 (237)
T ss_dssp HHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSS-
T ss_pred HHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCC-
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKS 104 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~ 104 (327)
++||+++|+++..|+.++
T Consensus 220 -----~~Gn~~le~lv~~L~~~g 237 (237)
T PF00682_consen 220 -----RAGNAPLEELVAALERMG 237 (237)
T ss_dssp -----TTSB-BHHHHHHHHHHT-
T ss_pred -----CCCCccHHHHHHHHhhcC
Confidence 999999999999887653
No 77
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=99.87 E-value=5.4e-22 Score=180.89 Aligned_cols=108 Identities=41% Similarity=0.607 Sum_probs=102.8
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|++.|+++||+|.++|.+++++++.+++.+|++++++|+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 150 ~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~- 228 (265)
T cd03174 150 EVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGE- 228 (265)
T ss_pred HHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccc-
Confidence 5788999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
++||+++|+++.+|+..+.++++|...+.
T Consensus 229 -----~~Gn~~~e~~~~~l~~~~~~~~~~~~~l~ 257 (265)
T cd03174 229 -----RAGNAATEDLVAALEGLGIDTGIDLEKLL 257 (265)
T ss_pred -----cccCccHHHHHHHHHhcCCCCCCCHHHHH
Confidence 99999999999999998888888876654
No 78
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=99.87 E-value=5.8e-22 Score=181.45 Aligned_cols=106 Identities=25% Similarity=0.351 Sum_probs=95.7
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+++|+|+||+|.++|.+++++++.+++.+|++++++|+|||+|++++|+++|+++|+++||+|++||||
T Consensus 155 ~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGe- 233 (273)
T cd07941 155 ATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGE- 233 (273)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEecccccc-
Confidence 5778889999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhh-hhhccc--Ccchhh
Q psy12516 82 PYARGASGNVATEDLVYMLE-GKSMQC--GVKEIA 113 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~-~~~~~~--Gid~i~ 113 (327)
++||+++|.++..|. +.+.+. ++|...
T Consensus 234 -----raGn~~~e~~~~~L~~~~~~~~~~~~~~~~ 263 (273)
T cd07941 234 -----RCGNANLCSIIPNLQLKMGYECLPEENLKK 263 (273)
T ss_pred -----ccccccHHHHHHHHHhccCCCCcCccCHHH
Confidence 999999999999886 334432 444443
No 79
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=99.87 E-value=1.7e-22 Score=199.32 Aligned_cols=158 Identities=22% Similarity=0.263 Sum_probs=124.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.++|+++|+|+||+|.++|.++.++++.+++.+|..++++|+|||+|||+||+++|+++|+++||+|++|+||
T Consensus 158 ~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGiGE- 236 (526)
T TIGR00977 158 ATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYGE- 236 (526)
T ss_pred HHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccC-
Confidence 6788899999999999999999999999999999999998666999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhh-hhcc--cCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEEE
Q psy12516 82 PYARGASGNVATEDLVYMLEG-KSMQ--CGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRGY 155 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~-~~~~--~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~~ 155 (327)
|+||+++|+++..|.. ++++ +++|.-.+. .+++...+. .+.. +...++++ .+++++|+|+.+.
T Consensus 237 -----RaGNa~Le~v~~~L~~~~g~~~~t~idl~~L~-~~s~~v~~~-~~~~----v~~~~pivG~~aF~h~sGiH~dgi 305 (526)
T TIGR00977 237 -----RCGNANLCSLIPNLQLKLGYDVIPPENLKKLT-STARLVAEI-VNLP----PDDNMPYVGRSAFAHKGGVHVSAV 305 (526)
T ss_pred -----ccCCCcHHHHHHHHHhhcCCCCCCccCHHHHH-HHHHHHHHH-hCCC----CCCCCCccCcceeeeeccccHHHH
Confidence 9999999999988763 5555 467766554 344433222 2222 12233444 3689999998887
Q ss_pred EeeeccCCCCCCCChHHHH
Q psy12516 156 ISCVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 156 l~~~~g~~~~~r~~~e~l~ 174 (327)
+.... +|+ .++|+.+.
T Consensus 306 ~k~~~--~Ye-~~~Pe~vG 321 (526)
T TIGR00977 306 QRNPF--TYE-HIAPELVG 321 (526)
T ss_pred hCCcc--ccc-cCCHHHcC
Confidence 76642 333 36666554
No 80
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=99.87 E-value=1.1e-21 Score=178.06 Aligned_cols=106 Identities=24% Similarity=0.384 Sum_probs=95.8
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+++|+|+||+|.++|++++++++.+++.+| +++++|+|||+||+++|+++|+++|+++||+|++|||+
T Consensus 145 ~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe- 222 (262)
T cd07948 145 RVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGE- 222 (262)
T ss_pred HHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc-
Confidence 5788999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhh---hcccCcchhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGK---SMQCGVKEIAV 114 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~---~~~~Gid~i~l 114 (327)
|+||+++|+++..|... ...+++|.-.+
T Consensus 223 -----raGn~~~e~~~~~l~~~~~~~~~~~~~l~~l 253 (262)
T cd07948 223 -----RNGITPLGGLIARMYTADPEYVVSKYKLELL 253 (262)
T ss_pred -----ccCCccHHHHHHHHHhccccCCCCCcCHHHH
Confidence 99999999999988643 33344554443
No 81
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=99.87 E-value=1e-21 Score=179.48 Aligned_cols=107 Identities=25% Similarity=0.399 Sum_probs=96.6
Q ss_pred HHHHHHH----cCcC-EEEecCCccccCH-------HHHHHHHHHHHhh--cCCCeeEEEecCccchHHHHHHHHHHcCC
Q psy12516 3 VASALYK----MGCY-EISLGDTIGVGTP-------GTMRLMLEDVLTV--IPADRLAVHCHDTYGQALANILTAMEFGI 68 (327)
Q Consensus 3 ~~~~~~~----~g~~-~i~~~Dt~G~~~p-------~~~~~~~~~~~~~--~~~~~~~~H~h~~~g~~~~~~~~a~~aG~ 68 (327)
+++++.+ +|+| +|+|+||+|.++| .+++++++.+++. .|+.++++|+|||+|++++|+++|+++|+
T Consensus 150 ~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~ 229 (279)
T cd07947 150 FVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGA 229 (279)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCC
Confidence 4555555 8999 8999999999998 6799999999988 56678999999999999999999999999
Q ss_pred cEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhh-hcccCcchhhhh
Q psy12516 69 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGK-SMQCGVKEIAVF 115 (327)
Q Consensus 69 ~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~-~~~~Gid~i~l~ 115 (327)
++||+|++|||+ ++||+++|+++.+|..+ ++++++|.-.+.
T Consensus 230 ~~vd~sv~GlGe------~aGN~~tE~lv~~l~~~~g~~t~idl~~l~ 271 (279)
T cd07947 230 SWVNCTLLGIGE------RTGNCPLEAMVIEYAQLKGNFDGMNLEVIT 271 (279)
T ss_pred CEEEEecccccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 999999999999 99999999999999887 899998876654
No 82
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=99.86 E-value=4.6e-22 Score=196.50 Aligned_cols=157 Identities=24% Similarity=0.248 Sum_probs=123.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.++|+++|+|+||+|.++|.+++++++.+++.+ ++++++|+|||+|||+||+++|+++|+++||+|++||||
T Consensus 162 ~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlGE- 239 (524)
T PRK12344 162 ATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYGE- 239 (524)
T ss_pred HHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc-
Confidence 567888999999999999999999999999999999988 589999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhh-hh--cccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEEE
Q psy12516 82 PYARGASGNVATEDLVYMLEG-KS--MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRGY 155 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~-~~--~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~~ 155 (327)
|+||+++|+++..|.. .+ +++++|.-.+. .+++.+.+. .++. +...++++ .+++++|+|+.+.
T Consensus 240 -----RaGNa~lE~lv~~L~~~~g~~~~t~idl~~l~-~is~~v~~~-~~~~----v~~~~pivG~~~F~h~SGiH~dgi 308 (524)
T PRK12344 240 -----RCGNANLCSIIPNLQLKMGYECLPEEKLKELT-EVSRFVSEI-ANLA----PDPHQPYVGASAFAHKGGIHVSAV 308 (524)
T ss_pred -----cccCcCHHHHHHHHHhccCCCCCCCcCHHHHH-HHHHHHHHH-hCCC----CCCCCCeECcchhhhhccccHHHH
Confidence 9999999999988763 45 44678876655 444443332 1222 11223444 3789999999887
Q ss_pred EeeeccCCCCCCCChHHHH
Q psy12516 156 ISCVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 156 l~~~~g~~~~~r~~~e~l~ 174 (327)
+... .+|+ .++|+.+.
T Consensus 309 ~k~~--~~Ye-~~~P~~vG 324 (524)
T PRK12344 309 LKDP--RTYE-HIDPELVG 324 (524)
T ss_pred hCCc--cccc-CCCHHHhC
Confidence 7653 2333 45665544
No 83
>KOG2368|consensus
Probab=99.86 E-value=5e-22 Score=169.85 Aligned_cols=116 Identities=67% Similarity=1.164 Sum_probs=110.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+.+|+|.||.|+.||-.++++++.+.+..|...+-.|+||++|.+++|++-+++.|+..+|+++.|||+|
T Consensus 173 ~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vvDSsvaGLGGC 252 (316)
T KOG2368|consen 173 EVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMGIRVVDSSVAGLGGC 252 (316)
T ss_pred HHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceehhhhccccCCC
Confidence 57899999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFAS 117 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~ 117 (327)
||..+.+||..+||++.+|+.+++++|++...+...
T Consensus 253 PYAkGAsGN~ATEDlvYmL~GlG~~TgVnL~Kliea 288 (316)
T KOG2368|consen 253 PYAKGASGNLATEDLVYMLNGLGLHTGVNLDKLIEA 288 (316)
T ss_pred CccccCCCCchHHHHHHHHhcCCcccCcCHHHHHHH
Confidence 999999999999999999999999999998776643
No 84
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=99.86 E-value=5.2e-21 Score=176.25 Aligned_cols=212 Identities=22% Similarity=0.253 Sum_probs=163.5
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|.|+|+|++|.++|....++++.+++.++ +++.+|+|++.|++.++++.|+|+|++.||+++..+.+
T Consensus 159 v~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~ 237 (472)
T COG5016 159 VELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSG 237 (472)
T ss_pred HHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHHHhCcchhhhhhccccC
Confidence 47899999999999999999999999999999999999998 99999999999999999999999999999999999998
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC--C-eEEEEEe
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG--I-RVRGYIS 157 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G--i-~v~~~l~ 157 (327)
.++++++|.++.+|++...++|.|...+. .+.+++..++++- + .... .
T Consensus 238 ------gtsqP~tEtmv~aL~gt~yDtgld~~~l~---------------------~~~~yf~~vrkkY~~~~~~~~--~ 288 (472)
T COG5016 238 ------GTSQPATETMVAALRGTGYDTGLDLELLE---------------------EIAEYFREVRKKYKGLLEPQA--K 288 (472)
T ss_pred ------CCCCCcHHHHHHHhcCCCCCccccHHHHH---------------------HHHHHHHHHHHHHhhccCccc--c
Confidence 99999999999999999999999876432 2222222222221 1 1110 0
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC-cHHHHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG-QALANILT 235 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g-~a~an~l~ 235 (327)
..-..--.++.+..++.++..|+.+.++ |. -+++-+-+.++++.++-.|+..-+..-.| .|+-|.+.
T Consensus 289 ~~d~~ili~qvPGGMlSNl~sQLkeqnaldK-----------~~eVLeEvprVredlGypPLVTPtSQiVGtQAvlNVl~ 357 (472)
T COG5016 289 GVDPRILIYQVPGGMLSNLESQLKEQNALDK-----------LEEVLEEVPRVREDLGYPPLVTPTSQIVGTQAVLNVLT 357 (472)
T ss_pred CCCCcceEeeCChHHHHHHHHHHHHcchhhH-----------HHHHHHHhHHHHhhcCCCCccCchhhhhhHHHHHHHHh
Confidence 0000001246899999999999999987 33 36788889999999877788877777554 67889888
Q ss_pred HHHhc--CceeeeccccCCC
Q psy12516 236 AMEFG--ISVFDSSIAGLGG 253 (327)
Q Consensus 236 a~~~G--~~~vd~s~~G~G~ 253 (327)
+-+.- .+.+---+.|+-+
T Consensus 358 GerYK~It~E~~~yv~G~YG 377 (472)
T COG5016 358 GERYKVITKETKDYVKGLYG 377 (472)
T ss_pred cchhhHHHHHHHHHhccccC
Confidence 73332 2233344556555
No 85
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.86 E-value=4.3e-21 Score=203.90 Aligned_cols=196 Identities=19% Similarity=0.249 Sum_probs=152.9
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|+|+|+||+|.++|.+++++++.+++.+ +++|++|+|||.|++++|+++|+++|+++||++++|||+
T Consensus 694 ~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~ 772 (1146)
T PRK12999 694 VDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSG 772 (1146)
T ss_pred HHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcC
Confidence 3678999999999999999999999999999999999998 499999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeec
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVV 160 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~ 160 (327)
++||+++|+++.+|+..+.++|+|...+. .+++. ++.+++.-.. -+.+..- ..
T Consensus 773 ------~tgn~~le~vv~~L~~~~~~t~idl~~l~-~~s~~-------------~~~~r~~y~~-~~~~~~~------~~ 825 (1146)
T PRK12999 773 ------LTSQPSLNSIVAALEGTERDTGLDLDAIR-KLSPY-------------WEAVRPYYAP-FESGLKS------PT 825 (1146)
T ss_pred ------CcCCHHHHHHHHHHHhcCCCCCcCHHHHH-HHHHH-------------HHHHHhHhhc-cCCCCCC------CC
Confidence 99999999999999999999999887654 22221 2222222211 1222210 00
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cCcHHHHHHH
Q psy12516 161 GCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YGQALANILT 235 (327)
Q Consensus 161 g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g~a~an~l~ 235 (327)
..-+.++.+...+.++..|+.+.|. |++ .++.+.+..+++.+++++...-+..- .-+|+-|...
T Consensus 826 ~~v~~~~~PGG~~snl~~q~~~~g~~~~~-----------~~v~~~~~~v~~~~G~~~~VTP~Sq~vg~~A~~~v~~ 891 (1146)
T PRK12999 826 TEVYLHEMPGGQYSNLKQQARALGLGDRF-----------EEVKEMYAAVNRMFGDIVKVTPSSKVVGDMALFMVQN 891 (1146)
T ss_pred cCeEEecCCCcccchHHHHHHHCChHhHH-----------HHHHHHHHHHHHHcCCCceeCccchhhHHHHHHHHhh
Confidence 0113457889999999999999875 332 47778889999988876666655553 3577777755
No 86
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=99.85 E-value=3.6e-21 Score=176.02 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=98.1
Q ss_pred HHHHHHHHc---CcC---EEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYKM---GCY---EISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~---g~~---~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
++++.+.++ |++ +|+|+||+|.++|+++.++++.+++.+|. +++++|+|||+||+++|+++|+++|+++||
T Consensus 160 ~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id 239 (284)
T cd07942 160 EVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRVE 239 (284)
T ss_pred HHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEEE
Confidence 566777776 544 99999999999999999999999998873 569999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
+|++|+|+ |+||.++|+++.+|..+++++|+|...+.
T Consensus 240 ~~~~g~Ge------RaGN~~~E~lv~~l~~~g~~t~id~~~l~ 276 (284)
T cd07942 240 GTLFGNGE------RTGNVDLVTLALNLYSQGVDPGLDFSDID 276 (284)
T ss_pred eeCccCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHH
Confidence 99999999 99999999999999888999998877654
No 87
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=99.85 E-value=2.2e-21 Score=192.87 Aligned_cols=145 Identities=17% Similarity=0.111 Sum_probs=119.9
Q ss_pred HHHHHHHHcCc------CEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYKMGC------YEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~------~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
++++.+.++|+ ++|.|+||+|.++|..+.++++.+++.+|. +++++|+|||+|||+||+++|+++|+++||
T Consensus 188 ~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~ 267 (564)
T TIGR00970 188 EVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIE 267 (564)
T ss_pred HHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 67888999987 499999999999999999999999998874 569999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcC
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNG 149 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~G 149 (327)
+|++|+|| |+||+++|+++.+|..+++++|+|.-.+. .+++...+ ..++.+ ...++++ .+++++|
T Consensus 268 gt~~G~GE------RaGNa~le~lv~~L~~~g~~t~idl~~L~-~~s~~v~~-~~~~~i----~~~~PivG~~aF~h~SG 335 (564)
T TIGR00970 268 GCLFGNGE------RTGNVDLVTLALNLYTQGVSPNLDFSNLD-EIRRTVEY-CNKIPV----HERHPYGGDLVYTAFSG 335 (564)
T ss_pred eecCcCCc------cccCccHHHHHHHHHhcCCCCCcCHHHHH-HHHHHHHH-HhCCCC----CCCCCchhhhHhhhccc
Confidence 99999999 99999999999999988999999887765 34443222 223322 2234444 3789999
Q ss_pred CeEEEEEee
Q psy12516 150 IRVRGYISC 158 (327)
Q Consensus 150 i~v~~~l~~ 158 (327)
+|+.+.+..
T Consensus 336 iH~dai~K~ 344 (564)
T TIGR00970 336 SHQDAINKG 344 (564)
T ss_pred hhHHHHhcC
Confidence 998776665
No 88
>PRK03739 2-isopropylmalate synthase; Validated
Probab=99.84 E-value=3.3e-21 Score=191.13 Aligned_cols=145 Identities=16% Similarity=0.124 Sum_probs=118.0
Q ss_pred HHHHHHHH---cCcC---EEEecCCccccCHHHHHHHHHHHHhhcC---CCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYK---MGCY---EISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~---~g~~---~i~~~Dt~G~~~p~~~~~~~~~~~~~~~---~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
++++.+.+ +|++ .|.|+||+|.++|..+.++++.+++.+| .+++++|+|||+|||+||+++|+++|+++||
T Consensus 189 ~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~ 268 (552)
T PRK03739 189 EVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVE 268 (552)
T ss_pred HHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEE
Confidence 45666665 5655 5999999999999999999999999887 5889999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcC
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNG 149 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~G 149 (327)
+|++|+|| |+||.++|+++..|..+++++|+|.-.+. .+++...+. .++.. ...++++ .+++++|
T Consensus 269 gtvnG~GE------RaGNa~le~vv~~L~~~g~~t~idl~~L~-~~s~~v~~~-~~~~i----~~~~PivG~~aF~hesG 336 (552)
T PRK03739 269 GCLFGNGE------RTGNVDLVTLALNLYTQGVDPGLDFSDID-EIRRTVEYC-NQLPV----HPRHPYAGDLVFTAFSG 336 (552)
T ss_pred eeCCcCcc------cccChhHHHHHHHHHhcCCCCCcCHHHHH-HHHHHHHHH-hCCCC----CCCCCccchhhhhhccc
Confidence 99999999 99999999999999888899999877765 444433221 23222 2234454 3789999
Q ss_pred CeEEEEEee
Q psy12516 150 IRVRGYISC 158 (327)
Q Consensus 150 i~v~~~l~~ 158 (327)
+|+.+.+..
T Consensus 337 iH~dgilk~ 345 (552)
T PRK03739 337 SHQDAIKKG 345 (552)
T ss_pred hhHHHHhcC
Confidence 998876655
No 89
>PRK14847 hypothetical protein; Provisional
Probab=99.84 E-value=2.1e-20 Score=172.86 Aligned_cols=97 Identities=24% Similarity=0.236 Sum_probs=90.2
Q ss_pred CcCEEEecCCccccCHHHHHHHHHHHHhhcC---CCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCc
Q psy12516 11 GCYEISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGA 87 (327)
Q Consensus 11 g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~---~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~ 87 (327)
|+++|+|+||+|.++|+.+.++++.+++..+ .+++++|+|||+|++++|+++|+++|+++||+|++|+|| |
T Consensus 206 ~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~tv~G~GE------R 279 (333)
T PRK14847 206 RKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGE------R 279 (333)
T ss_pred CCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEeeCCcCCc------c
Confidence 4778999999999999999999999998875 589999999999999999999999999999999999999 9
Q ss_pred cCCCcHHHHHHHhhhhhcccCcchhh
Q psy12516 88 SGNVATEDLVYMLEGKSMQCGVKEIA 113 (327)
Q Consensus 88 ~gn~~~e~v~~~l~~~~~~~Gid~i~ 113 (327)
+||.++|+++.+|...++++++|...
T Consensus 280 aGNa~lE~v~~~L~~~g~~~~id~~~ 305 (333)
T PRK14847 280 TGNVDLVALALNLERQGIASGLDFRD 305 (333)
T ss_pred ccchhHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999999998888888877654
No 90
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.83 E-value=6.2e-20 Score=194.35 Aligned_cols=195 Identities=18% Similarity=0.239 Sum_probs=148.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.+ ++++++|+|||+|++++|+++|+++|+++||++++|||+
T Consensus 693 ~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai~gl~G- 770 (1143)
T TIGR01235 693 NLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAVDSMSG- 770 (1143)
T ss_pred HHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecchhhcC-
Confidence 688999999999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVG 161 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g 161 (327)
.++++++|+++.+|...+.++|+|...+. .+++. ++.+++.-.. -+.+.. ....
T Consensus 771 -----~ts~p~~e~~v~~L~~~~~~tgidl~~l~-~is~~-------------~~~vr~~y~~-~~~~~~------~~~~ 824 (1143)
T TIGR01235 771 -----LTSQPSLGAIVAALEGSERDPGLNVAWIR-ELSAY-------------WEAVRNLYAA-FESDLK------GPAS 824 (1143)
T ss_pred -----CCCCHhHHHHHHHHHhCCCCCCcCHHHHH-HHHHH-------------HHHHHHHhhc-CCCCCc------CCCc
Confidence 77888999999999998999999877654 22221 2222222111 012221 0000
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCc-CcHHHHHHH
Q psy12516 162 CPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTY-GQALANILT 235 (327)
Q Consensus 162 ~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~-g~a~an~l~ 235 (327)
.-+.++.+...+.++..|+.+.|. |++ .++.+.+..+++.+++++...-+..-. -+|+-|...
T Consensus 825 ~v~~~~~PGG~~snl~~q~~~~g~~~~~-----------~~v~~~~~~v~~~lG~~~~VTP~Sq~vg~~A~~~v~~ 889 (1143)
T TIGR01235 825 EVYLHEMPGGQYTNLQFQARSLGLGDRW-----------HEVKQAYREANQMFGDIVKVTPSSKVVGDMALFMVSN 889 (1143)
T ss_pred CeEEecCCCcccchHHHHHHHCCcHhhH-----------HHHHHHHHHHHHHcCCCceECChhHhHHHHHHHHHHh
Confidence 113457888999999999999986 332 467888889998888766665555433 355544433
No 91
>KOG2367|consensus
Probab=99.68 E-value=1.6e-16 Score=149.12 Aligned_cols=98 Identities=27% Similarity=0.476 Sum_probs=92.5
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEEecccC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~g 77 (327)
+|+.+...++|+.++.|+||+|+.+|.+..++++.++.+.|+ +.|..|+|||+|+++||+..++++|+++||+++.|
T Consensus 207 ~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~VE~~i~G 286 (560)
T KOG2367|consen 207 LEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQVEVTING 286 (560)
T ss_pred HHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceEEEEeec
Confidence 467888999999999999999999999999999999999986 67999999999999999999999999999999999
Q ss_pred CCCCCCCCCccCCCcHHHHHHHhhhhh
Q psy12516 78 LGGCPYARGASGNVATEDLVYMLEGKS 104 (327)
Q Consensus 78 lg~~p~~~~~~gn~~~e~v~~~l~~~~ 104 (327)
+|| |+||.+++++++.|+-++
T Consensus 287 iGE------RtGn~~L~~v~m~my~~g 307 (560)
T KOG2367|consen 287 IGE------RTGNAPLEEVVMAMYCRG 307 (560)
T ss_pred ccc------ccCCCCHHHHHHHheecC
Confidence 999 999999999999887655
No 92
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.50 E-value=6.7e-14 Score=138.44 Aligned_cols=173 Identities=20% Similarity=0.318 Sum_probs=132.3
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|++++.++|++|++.|...+.|++++++.+ ++||++|+||+.|.+++.+.+|+++|++.+|+++..|.+
T Consensus 697 ~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHTHDTsG~~~at~~aA~~AGvDivD~A~~smsG 775 (1149)
T COG1038 697 VKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDTSGNGVATYLAAVEAGVDIVDVAMASMSG 775 (1149)
T ss_pred HHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEeccCCCccHHHHHHHHHHcCCchhhhhhhhccC
Confidence 3689999999999999999999999999999999999998 699999999999999999999999999999999999998
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe---EEEEEe
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR---VRGYIS 157 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~---v~~~l~ 157 (327)
-+.++++..++.+|...-.++|+|...+- ..|. .|+.++.+-. .=++|++ .++
T Consensus 776 ------~TSQPsl~si~~al~~~~r~~~ld~~~~~-~i~~-------------YWe~vR~~Ya-~FEs~lkgp~~eV--- 831 (1149)
T COG1038 776 ------LTSQPSLNSIVAALAGTERDTGLDIEAVR-ELSF-------------YWEAVRKLYA-PFESGLKGPATEV--- 831 (1149)
T ss_pred ------CCCCccHHHHHHHhcCCCCCCCCCHHHHH-HHHH-------------HHHHHHHhhh-hhhcCCCCCCcce---
Confidence 88999999999999887788887764322 1111 2333333222 1244443 222
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCC
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~ 215 (327)
|.+..+...+.++.+|+.+.|. +++ +++.+.++.+...+.+
T Consensus 832 ------Y~HEmPGGQ~tNLk~QA~slGLg~Rw-----------~evk~~Y~~vN~mfGd 873 (1149)
T COG1038 832 ------YLHEMPGGQLTNLKQQARSLGLGDRW-----------EEVKEAYREVNRMFGD 873 (1149)
T ss_pred ------eeeecCCcccccHHHHHHhccchhhH-----------HHHHHHHHHHHHHhCC
Confidence 2345677788899999987664 221 4566666666555555
No 93
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=99.48 E-value=2.8e-13 Score=128.20 Aligned_cols=94 Identities=23% Similarity=0.453 Sum_probs=86.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.++|++.++++||.|.++|.++..++..+++..|.+++++|+||+.|++++|++.|+++|+.++|+++.|||+
T Consensus 143 ~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~glG~- 221 (344)
T TIGR02146 143 SIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGE- 221 (344)
T ss_pred HHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEeeeeeC-
Confidence 5677888899999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhh
Q psy12516 82 PYARGASGNVATEDLVYMLE 101 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~ 101 (327)
+.||.+++.++..+.
T Consensus 222 -----~~G~~~l~~~~~~L~ 236 (344)
T TIGR02146 222 -----RNGITPLGGILARLY 236 (344)
T ss_pred -----CCCCccHHHHHHHHH
Confidence 668988877765543
No 94
>KOG0369|consensus
Probab=99.32 E-value=9.6e-12 Score=121.25 Aligned_cols=109 Identities=26% Similarity=0.410 Sum_probs=99.3
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|.+.++|+|++|.+.|...+.++..++..+|++||++|+|++.|.+++..+++.++|++++|+++.-|.+
T Consensus 721 ~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtHDtsGagVAsMlaca~AGADVVDvA~dSMSG 800 (1176)
T KOG0369|consen 721 LNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVASMLACALAGADVVDVAVDSMSG 800 (1176)
T ss_pred HHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEeccCCccHHHHHHHHHHHcCCceeeeecccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
-+.+++.-.++..+.+.-.++|++.-++.
T Consensus 801 ------mTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~ 829 (1176)
T KOG0369|consen 801 ------MTSQPSMGALVASLQGTPLDTGLNLEHVR 829 (1176)
T ss_pred ------cccCCchhhhhhhccCCcccCCCchHHHH
Confidence 77788888888888777788888766543
No 95
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=98.02 E-value=0.00076 Score=63.97 Aligned_cols=225 Identities=15% Similarity=0.122 Sum_probs=130.1
Q ss_pred HHHHHHHHcCcCEEEecCC-ccccCHHHHHHHHHHHHhhcCCCeeEEEe---------cCccchHHHHHHHHH-HcCCcE
Q psy12516 2 KVASALYKMGCYEISLGDT-IGVGTPGTMRLMLEDVLTVIPADRLAVHC---------HDTYGQALANILTAM-EFGISV 70 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt-~G~~~p~~~~~~~~~~~~~~~~~~~~~H~---------h~~~g~~~~~~~~a~-~aG~~~ 70 (327)
+.++.+.+.|++.|.|.+- .-...+..+.++++.+++..|++. +|+ +.+.|+-....+..| ++|++.
T Consensus 77 e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~--~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~ 154 (343)
T TIGR03551 77 ERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMH--IHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDS 154 (343)
T ss_pred HHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCce--EEecCHHHHHHHHHHcCCCHHHHHHHHHHhCccc
Confidence 5577788889999999832 113456667888888888776433 332 334444444444444 345544
Q ss_pred EEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHH-HHHHhhcC-ChHHHHHHHHHHHHHHHHc
Q psy12516 71 FDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEM-FSKRNINC-TIEESLERFSEVVSTALTN 148 (327)
Q Consensus 71 id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~-~~~~~l~~-s~ee~i~~~~~~v~~a~~~ 148 (327)
+- +.+. ...++. ..+..-+. + .++..+.++.+++.
T Consensus 155 i~----~~~~-----------------------------------E~~~~~v~~~i~~~~~~----~~~~~~~i~~a~~~ 191 (343)
T TIGR03551 155 MP----GTAA-----------------------------------EILDDEVRKVICPDKLS----TAEWIEIIKTAHKL 191 (343)
T ss_pred cc----Ccch-----------------------------------hhcCHHHHHhcCCCCCC----HHHHHHHHHHHHHc
Confidence 42 0010 000010 00111001 2 34456789999999
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE------EEec----CCC--------CccCHHHHHHHHHHHH
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE------ISLG----DTI--------GVGTPGTMRLMLEDVL 210 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~------i~l~----Dt~--------G~~~P~~~~~~~~~~~ 210 (327)
|+++...+. +|.+ -+.++..+....+.+++.+. |-+. .|- ..++|.+..++++..|
T Consensus 192 Gi~v~s~~i--~G~~----Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~R 265 (343)
T TIGR03551 192 GIPTTATIM--YGHV----ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIAR 265 (343)
T ss_pred CCcccceEE--EecC----CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHH
Confidence 999876554 3433 35577777777777776552 2222 221 2357889999999888
Q ss_pred HhcCCC--eEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCCC
Q psy12516 211 TVIPAD--RLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYMLEGMGIET 280 (327)
Q Consensus 211 ~~~~~~--~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l~~~g~~~ 280 (327)
=.+|+. .|..-. ...|. .....++.+||+-+++|+..-=--|.+....+ -.++++++.+.+..|+.+
T Consensus 266 l~lp~~~~~i~a~~-~~l~~--~~~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~~~ 335 (343)
T TIGR03551 266 ILLHGLIDNIQASW-VKLGK--KLAQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGRIP 335 (343)
T ss_pred HhCCCcccCeeccc-cccCH--HHHHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCCCe
Confidence 777864 344433 23333 33478899999999988753111012211222 247899999999888764
No 96
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=97.81 E-value=0.0026 Score=60.58 Aligned_cols=137 Identities=17% Similarity=0.114 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE------EEe----cCCC------CccC
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE------ISL----GDTI------GVGT 198 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~------i~l----~Dt~------G~~~ 198 (327)
.++..++++.+++.|+++...++. |- --++++..+....+.+.+.+. |-+ .+|- ...+
T Consensus 187 ~~~~l~~i~~a~~~Gi~~~sg~i~--Gl----gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~ 260 (351)
T TIGR03700 187 AERWLEIHRTAHELGLKTNATMLY--GH----IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPT 260 (351)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEe--eC----CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCC
Confidence 455677899999999998776554 31 135677777777777776542 333 2442 3478
Q ss_pred HHHHHHHHHHHHHhcCCCe-EEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHHHhC
Q psy12516 199 PGTMRLMLEDVLTVIPADR-LAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYMLEGM 276 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~-l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l~~~ 276 (327)
|.+..++++..|-.+|+++ |..-. ...|. .....++.+||+-+.+|+..----|.+....+ .++.+++...+++.
T Consensus 261 ~~e~lr~iA~~Rl~l~~i~~i~a~w-~~~~~--~~~~~~L~~Gand~ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~ 337 (351)
T TIGR03700 261 GLDDLKTLAVSRLYLDNIPHIKAYW-VMLGL--KLAQVALAFGVNDLDGTVVEEKIGHDAGAKSPQALSKDELVRLIRDA 337 (351)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccc-cccCH--HHHHHHHhcCCCCCCccCccceeeccccCCCCCCCCHHHHHHHHHHc
Confidence 8899998888887676521 11100 11133 45688999999999888753221121111222 46889999999988
Q ss_pred CCCC
Q psy12516 277 GIET 280 (327)
Q Consensus 277 g~~~ 280 (327)
|+..
T Consensus 338 g~~p 341 (351)
T TIGR03700 338 GRVP 341 (351)
T ss_pred CCCe
Confidence 8754
No 97
>PRK02227 hypothetical protein; Provisional
Probab=97.76 E-value=0.0015 Score=57.96 Aligned_cols=177 Identities=18% Similarity=0.189 Sum_probs=112.7
Q ss_pred HHHHHHHHcCcCEEEecCCc----cccCHHHHHHHHHHHHhhcCCCeeEE---EecCccchHHHHHHHHHHcCCcEEEec
Q psy12516 2 KVASALYKMGCYEISLGDTI----GVGTPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAMEFGISVFDSS 74 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~----G~~~p~~~~~~~~~~~~~~~~~~~~~---H~h~~~g~~~~~~~~a~~aG~~~id~~ 74 (327)
+-+..+.+.|+|.|-++|.. |-..||.++++++.+....| +.. -.....|.....++.+...|+++|.++
T Consensus 11 eEA~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~p---vSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvG 87 (238)
T PRK02227 11 EEALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKP---VSATIGDVPYKPGTISLAALGAAATGADYVKVG 87 (238)
T ss_pred HHHHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCC---ceeeccCCCCCchHHHHHHHHHHhhCCCEEEEc
Confidence 45677889999999999998 99999999998888876544 222 223344666666777778999999999
Q ss_pred ccCCCCCC--------------------------C-CCCccCCCcHHHHHHHhhhhh-----cccC-cchhhhhhhhhHH
Q psy12516 75 IAGLGGCP--------------------------Y-ARGASGNVATEDLVYMLEGKS-----MQCG-VKEIAVFASASEM 121 (327)
Q Consensus 75 ~~glg~~p--------------------------~-~~~~~gn~~~e~v~~~l~~~~-----~~~G-id~i~l~~~~sd~ 121 (327)
+.+....+ | +..+.+.+++.++.....+.+ ++|. .|.-.+|...+
T Consensus 88 l~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l~-- 165 (238)
T PRK02227 88 LYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHMD-- 165 (238)
T ss_pred CCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhCC--
Confidence 87554311 0 112334455666655443322 2222 22333444333
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE------EecC-CC
Q psy12516 122 FSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI------SLGD-TI 194 (327)
Q Consensus 122 ~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i------~l~D-t~ 194 (327)
.+.+.+.++.+++.|+.+.. ++....+++- .+..+++|.+ |-.+ -.
T Consensus 166 -------------~~~L~~Fv~~ar~~Gl~~gL----------AGSL~~~dip----~L~~l~pD~lGfRgavC~g~dR~ 218 (238)
T PRK02227 166 -------------EEELAEFVAEARSHGLMSAL----------AGSLKFEDIP----ALKRLGPDILGVRGAVCGGGDRT 218 (238)
T ss_pred -------------HHHHHHHHHHHHHcccHhHh----------cccCchhhHH----HHHhcCCCEEEechhccCCCCcc
Confidence 56788889999999987531 2223334433 4566777743 3333 77
Q ss_pred CccCHHHHHHHHHHHH
Q psy12516 195 GVGTPGTMRLMLEDVL 210 (327)
Q Consensus 195 G~~~P~~~~~~~~~~~ 210 (327)
+.+.|+.+.++.+.+.
T Consensus 219 ~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 219 GRIDPELVAELREALR 234 (238)
T ss_pred cccCHHHHHHHHHHhh
Confidence 8899998888766654
No 98
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=97.74 E-value=0.0048 Score=57.63 Aligned_cols=136 Identities=16% Similarity=0.140 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE------EE----ecCCC-------CccC
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE------IS----LGDTI-------GVGT 198 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~------i~----l~Dt~-------G~~~ 198 (327)
++..++++.+++.|+++...++ +|-+ -+.++..+....+.+.+.+. |= -.+|- ...+
T Consensus 145 ~~~l~~i~~a~~~Gi~~~s~~i--iG~~----Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~ 218 (309)
T TIGR00423 145 DEWLEVIKTAHRLGIPTTATMM--FGHV----ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGAS 218 (309)
T ss_pred HHHHHHHHHHHHcCCCceeeEE--ecCC----CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCC
Confidence 3456789999999999876654 4433 36777888888888877652 11 12442 2367
Q ss_pred HHHHHHHHHHHHHhcCCCe-EEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHHHhC
Q psy12516 199 PGTMRLMLEDVLTVIPADR-LAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYMLEGM 276 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~-l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l~~~ 276 (327)
|.+..++++..|-.+|.++ +..-. +.+|-- ....++.+||+-+++|+..-=--|.|....+ -.+.+++...+++.
T Consensus 219 ~~e~lr~iA~~Rl~lp~~~~i~a~~-~~l~~~--~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~ 295 (309)
T TIGR00423 219 GIDDLKVIAISRILLNNIRNIQASW-VKLGLK--LAQVALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDA 295 (309)
T ss_pred HHHHHHHHHHHHHhcCCCccceecc-hhcCHH--HHHHHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHc
Confidence 8888888888887777533 44322 344432 2478899999999988742211122222223 46789999999887
Q ss_pred CCCC
Q psy12516 277 GIET 280 (327)
Q Consensus 277 g~~~ 280 (327)
|+..
T Consensus 296 g~~~ 299 (309)
T TIGR00423 296 GRVP 299 (309)
T ss_pred CCCe
Confidence 7653
No 99
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=97.66 E-value=0.0068 Score=57.36 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE------EEe----cCCC----CccCHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE------ISL----GDTI----GVGTPG 200 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~------i~l----~Dt~----G~~~P~ 200 (327)
.+...++++.+++.|+++...+.. | . --+++...+....+.+.+.+. |-+ .+|- ...+|.
T Consensus 180 ~~~~l~~i~~a~~~Gi~v~~~~ii--G-l---gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~ 253 (340)
T TIGR03699 180 SEEWLEVMETAHKLGLPTTATMMF--G-H---VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATST 253 (340)
T ss_pred HHHHHHHHHHHHHcCCCccceeEe--e-C---CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHH
Confidence 344578899999999998755443 3 1 245677888888888887654 221 2331 246788
Q ss_pred HHHHHHHHHHHhcCCC-eEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCcc---HHHHHHHHHhC
Q psy12516 201 TMRLMLEDVLTVIPAD-RLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVA---TEDLVYMLEGM 276 (327)
Q Consensus 201 ~~~~~~~~~~~~~~~~-~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~---~e~~~~~l~~~ 276 (327)
+..+.++..|-.+|+. .+..-. .. ++......++.+||+-+++++..=.--+ .+|..+ +++++.++++.
T Consensus 254 e~l~~iA~~Rl~lp~~~~i~~~~-~~--~g~~~~~~~l~~Gan~~~g~~~~~~~~~----~~g~~~~~~~~~~~~~i~~~ 326 (340)
T TIGR03699 254 EYLKVLAISRIFLDNIPNIQASW-VT--QGKEVGQLALHFGANDFGSTMLEENVVA----AAGATHRASREEIIRIIREA 326 (340)
T ss_pred HHHHHHHHHHHcCCCCCcccCCc-cc--cChHHHHHHHhcCCccCCCccccccccc----cCCCCCCCCHHHHHHHHHHc
Confidence 9999999888878862 122211 12 2333457789999999888876311101 234333 79999999988
Q ss_pred CCCC
Q psy12516 277 GIET 280 (327)
Q Consensus 277 g~~~ 280 (327)
|+..
T Consensus 327 g~~~ 330 (340)
T TIGR03699 327 GFIP 330 (340)
T ss_pred CCCe
Confidence 8764
No 100
>PRK08444 hypothetical protein; Provisional
Probab=97.60 E-value=0.014 Score=55.58 Aligned_cols=227 Identities=17% Similarity=0.176 Sum_probs=129.1
Q ss_pred HHHHHHHHcCcCEEEecCCc--cccCHHHHHHHHHHHHhhcCCCeeEE-EecC------ccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDTI--GVGTPGTMRLMLEDVLTVIPADRLAV-HCHD------TYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~--G~~~p~~~~~~~~~~~~~~~~~~~~~-H~h~------~~g~~~~~~~~a~-~aG~~~i 71 (327)
+.++++.+.|++++.|. +. .......+.++++.+++.+|++.++. -.-+ ..|+.+...+..| ++|.+.+
T Consensus 87 ~~a~~a~~~G~~ei~iv-~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~ 165 (353)
T PRK08444 87 EIVKNSVKRGIKEVHIV-SAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSM 165 (353)
T ss_pred HHHHHHHHCCCCEEEEe-ccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccC
Confidence 56777888999999998 33 12233567788888888887432221 0011 3444443444444 3444433
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHH-HHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMF-SKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~-~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
. | |+ .|. .++.+ .+..-.+. ..++..++++.|++.|+
T Consensus 166 ~----g-~~------------aEi----------------------~~~~vr~~I~p~k~---~~~~~~~i~~~a~~~Gi 203 (353)
T PRK08444 166 P----G-GG------------AEI----------------------FDEEVRKKICKGKV---SSERWLEIHKYWHKKGK 203 (353)
T ss_pred C----C-CC------------chh----------------------cCHHHHhhhCCCCC---CHHHHHHHHHHHHHcCC
Confidence 2 1 10 000 01100 11111111 13566778889999999
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE------EEe----cCC----CCccCHHHHHHHHHHHHHhcCCC
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE------ISL----GDT----IGVGTPGTMRLMLEDVLTVIPAD 216 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~------i~l----~Dt----~G~~~P~~~~~~~~~~~~~~~~~ 216 (327)
++.....+ |- -=++++..+....+.++..+. |-+ ..| ....+|.+..+.++..|-.+|++
T Consensus 204 ~~~sg~l~--G~----gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i 277 (353)
T PRK08444 204 MSNATMLF--GH----IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNI 277 (353)
T ss_pred CccceeEE--ec----CCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 98766554 32 235667777777777765542 223 344 12477888888888877666653
Q ss_pred eEEEeecCC-cCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCCC
Q psy12516 217 RLAVHCHDT-YGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYMLEGMGIET 280 (327)
Q Consensus 217 ~l~~H~Hn~-~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l~~~g~~~ 280 (327)
-|.... .-++...+..|+.+||+-+++|+..-=--|.|...++ ..+.+++...+++.|+..
T Consensus 278 ---~ni~a~w~~~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~p 340 (353)
T PRK08444 278 ---PHIKAYWATLTLNLALVAQEFGANDLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFIP 340 (353)
T ss_pred ---CccccccccCcHHHHHHHHhcCCccCccccccccchhhccCCCCCCCCHHHHHHHHHHcCCCe
Confidence 122221 1245678889999999999999753211122222233 568899999999877653
No 101
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.59 E-value=0.012 Score=55.42 Aligned_cols=113 Identities=17% Similarity=0.283 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCC-------CC-----------CCCChHHHHHHHHHHHHcCcCEE--Ee
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCP-------YE-----------GAVPPHNVTRVATALYKMGCYEI--SL 190 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~-------~~-----------~r~~~e~l~~~~~~~~~~g~~~i--~l 190 (327)
.+|+++..++++++|+..|+.|++-|...-+.+ +. ..++|++..+++ .+.|+|.+ .+
T Consensus 118 ~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv---~~TgvD~LAvai 194 (347)
T PRK09196 118 YEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFV---KKTQVDALAIAI 194 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHH---HHhCcCeEhhhh
Confidence 455688899999999999999998886643222 11 135666655544 45688854 44
Q ss_pred cCCCCccC----HH---HHHHHHHHHHHhcCCCeEEEeecCCc-------------------CcHHHHHHHHHHhcCcee
Q psy12516 191 GDTIGVGT----PG---TMRLMLEDVLTVIPADRLAVHCHDTY-------------------GQALANILTAMEFGISVF 244 (327)
Q Consensus 191 ~Dt~G~~~----P~---~~~~~~~~~~~~~~~~~l~~H~Hn~~-------------------g~a~an~l~a~~~G~~~v 244 (327)
.-..|.-. |. ==.++++.+++.++++||.+|.=... |..-.....|++.|+..|
T Consensus 195 GT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KI 274 (347)
T PRK09196 195 GTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKV 274 (347)
T ss_pred ccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceE
Confidence 44566542 42 11235677888887789999986644 667889999999999886
Q ss_pred ee
Q psy12516 245 DS 246 (327)
Q Consensus 245 d~ 246 (327)
..
T Consensus 275 Ni 276 (347)
T PRK09196 275 NI 276 (347)
T ss_pred Ee
Confidence 53
No 102
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=97.55 E-value=0.029 Score=51.85 Aligned_cols=130 Identities=11% Similarity=0.049 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe------cCC----CCccCHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL------GDT----IGVGTPGTMRL 204 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l------~Dt----~G~~~P~~~~~ 204 (327)
++...+.++.+++.|+++...+. +|. . -+.+++.+.++.+.+.+++.+.+ +.| ....++++..+
T Consensus 157 ~~~~~~ai~~l~~~Gi~v~~~~i--~Gl-~---et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~ 230 (296)
T TIGR00433 157 YDDRVDTLENAKKAGLKVCSGGI--FGL-G---ETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALK 230 (296)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE--EeC-C---CCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHH
Confidence 55667788889999999876544 342 2 35678888889999999885532 233 12345578888
Q ss_pred HHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q psy12516 205 MLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 205 ~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
++...|..+|...|.+=+=-..-+.-.-..-++.+|++.+-+ .++=- ..|+.+.++=+.++++.|+
T Consensus 231 ~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~--g~~~~------~~g~~~~~~~~~~~~~~~~ 296 (296)
T TIGR00433 231 TIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFV--GDYLT------TTGNPEEDKDKKLLAKLGL 296 (296)
T ss_pred HHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEE--cCccc------CCCCCCcHHHHHHHHHcCC
Confidence 899999888875452211111112211122378999987653 22222 4588888555667776653
No 103
>PRK07360 FO synthase subunit 2; Reviewed
Probab=97.50 E-value=0.016 Score=55.56 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE------EEe---------cCCCCc---cC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE------ISL---------GDTIGV---GT 198 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~------i~l---------~Dt~G~---~~ 198 (327)
...++++.+++.|+++...+.. |- --+.++..+....+.+.+++. |-+ .+.... .+
T Consensus 202 ~~l~~i~~a~~~Gl~~~sg~i~--G~----gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~ 275 (371)
T PRK07360 202 EWIEIVKTAHKLGLPTTSTMMY--GH----VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAP 275 (371)
T ss_pred HHHHHHHHHHHcCCCceeeEEe--eC----CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCC
Confidence 3467899999999998765443 21 136677888888888877654 322 222211 36
Q ss_pred HHHHHHHHHHHHHhcCC--CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC-CCC-CccHHHHHHHHH
Q psy12516 199 PGTMRLMLEDVLTVIPA--DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG-ASG-NVATEDLVYMLE 274 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~--~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g-~~G-n~~~e~~~~~l~ 274 (327)
|.+..+.++..|=.+|+ +.|-.-. ...| ......++.+||+-+.+++.+-=--+ +.| ... ..+++++...++
T Consensus 276 ~~~~lr~iAi~Rl~lp~~~~~i~a~~-~~lg--~~~~~~~l~~Gan~~~~~~~~~~v~~-~~G~~~~~~~~~~~~~~~i~ 351 (371)
T PRK07360 276 GLEDLLLYAVSRIFLGNWIKNIQASW-VKLG--LKLAQVALNCGANDLGGTLMEEHITK-MAGASGGTYMSVEELQWMIK 351 (371)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeeccc-eeeC--HHHHHHHHhcCCccCcCcCcccceec-ccCCCCCCCCCHHHHHHHHH
Confidence 77888888888877787 2333322 2333 23356689999999988876411101 011 111 258899999999
Q ss_pred hCCCCC
Q psy12516 275 GMGIET 280 (327)
Q Consensus 275 ~~g~~~ 280 (327)
+.|+..
T Consensus 352 ~~G~~~ 357 (371)
T PRK07360 352 SIGRIP 357 (371)
T ss_pred HcCCce
Confidence 888764
No 104
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=97.41 E-value=0.032 Score=52.64 Aligned_cols=113 Identities=18% Similarity=0.334 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCC-------CC-----------CCCChHHHHHHHHHHHHcCcCE--EEe
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCP-------YE-----------GAVPPHNVTRVATALYKMGCYE--ISL 190 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~-------~~-----------~r~~~e~l~~~~~~~~~~g~~~--i~l 190 (327)
.+|+++..++++++|+..|+.|++-|...-+.+ +. ..++|++..++++ +.|+|. +.+
T Consensus 118 ~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvai 194 (347)
T PRK13399 118 YDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQ---RTGVDALAIAI 194 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHH---HHCcCEEhhhh
Confidence 355688899999999999999998886532222 11 1456766665554 468885 444
Q ss_pred cCCCCccC----HH---HHHHHHHHHHHhcCCCeEEEeecCC-------------------cCcHHHHHHHHHHhcCcee
Q psy12516 191 GDTIGVGT----PG---TMRLMLEDVLTVIPADRLAVHCHDT-------------------YGQALANILTAMEFGISVF 244 (327)
Q Consensus 191 ~Dt~G~~~----P~---~~~~~~~~~~~~~~~~~l~~H~Hn~-------------------~g~a~an~l~a~~~G~~~v 244 (327)
.-..|.-. |. ==.++++.+++.++++||.+|.=.. +|........|++.|+.-|
T Consensus 195 Gt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KI 274 (347)
T PRK13399 195 GTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKV 274 (347)
T ss_pred ccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEE
Confidence 45666542 42 1234678888888668999997654 3556788899999999876
Q ss_pred ee
Q psy12516 245 DS 246 (327)
Q Consensus 245 d~ 246 (327)
..
T Consensus 275 Ni 276 (347)
T PRK13399 275 NI 276 (347)
T ss_pred Ee
Confidence 53
No 105
>PRK07094 biotin synthase; Provisional
Probab=97.39 E-value=0.031 Score=52.43 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec------CC----CCccCHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG------DT----IGVGTPGTMRL 204 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~------Dt----~G~~~P~~~~~ 204 (327)
.++..+.++.+++.|+.+...++ +|-|. -+.+.+.+..+.+.+.+++.+.+. .| .....+.++.+
T Consensus 164 ~~~~~~~i~~l~~~Gi~v~~~~i--iGlpg---et~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~ 238 (323)
T PRK07094 164 FENRIACLKDLKELGYEVGSGFM--VGLPG---QTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLK 238 (323)
T ss_pred HHHHHHHHHHHHHcCCeecceEE--EECCC---CCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHH
Confidence 45567788899999998766555 44343 366888888999999988855431 11 11345678888
Q ss_pred HHHHHHHhcCCCeE----EEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 205 MLEDVLTVIPADRL----AVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 205 ~~~~~~~~~~~~~l----~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
+++..|..+|+..+ ++-++... -...++.+||+.+=.++.
T Consensus 239 ~~a~~R~~lp~~~i~~~~~~~~~~~~-----~~~~~l~~Gan~~~~~~~ 282 (323)
T PRK07094 239 VLALLRLLLPDANIPATTALGTLNPD-----GREKGLKAGANVVMPNLT 282 (323)
T ss_pred HHHHHHHhCcCCCCcccCCccccCch-----hHHHHHHcCCceecCCCC
Confidence 88888888887444 22222221 224789999987665554
No 106
>PRK08445 hypothetical protein; Provisional
Probab=97.35 E-value=0.019 Score=54.65 Aligned_cols=231 Identities=12% Similarity=0.088 Sum_probs=129.6
Q ss_pred HHHHHHHHcCcCEEEecCC-ccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDT-IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt-~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+.++++.+.|++.|.+.+- .-...+..+.++++.+++.+|++ .+|+-.... ++. +.
T Consensus 80 ~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i--~~~a~s~~e----------------i~~-~a---- 136 (348)
T PRK08445 80 KKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTI--TIHGFSAVE----------------IDY-IA---- 136 (348)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCc--EEEEccHHH----------------HHH-HH----
Confidence 4567788889998888752 23345667888889999988743 233211110 000 00
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhh-h-hhhhhHHHHHHh--hcCChHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIA-V-FASASEMFSKRN--INCTIEESLERFSEVVSTALTNGIRVRGYI 156 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~-l-~~~~sd~~~~~~--l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l 156 (327)
+.+....++.+..|+ +.|++.+. + ....++...+.- -..+.++ ..++++.+++.|+++...+
T Consensus 137 ------~~~~~~~~e~L~~Lk----eAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~----~i~~i~~a~~~Gi~~~sg~ 202 (348)
T PRK08445 137 ------KISKISIKEVLERLQ----AKGLSSIPGAGAEILSDRVRDIIAPKKLDSDR----WLEVHRQAHLIGMKSTATM 202 (348)
T ss_pred ------HHhCCCHHHHHHHHH----HcCCCCCCCCceeeCCHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCeeeeEE
Confidence 111123344444444 34455442 2 333344333322 1344444 3588999999999998766
Q ss_pred eeeccCCCCCCCChHHHHHHHHHHHHcCcC-----EEE-----ecCCC--------CccCHHHHHHHHHHHHHhcCC-Ce
Q psy12516 157 SCVVGCPYEGAVPPHNVTRVATALYKMGCY-----EIS-----LGDTI--------GVGTPGTMRLMLEDVLTVIPA-DR 217 (327)
Q Consensus 157 ~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~-----~i~-----l~Dt~--------G~~~P~~~~~~~~~~~~~~~~-~~ 217 (327)
+. |- .-++++..+....+.++..+ .+. -.+|- ...+|.+..++++..|-.+|+ ..
T Consensus 203 i~--G~----~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~ 276 (348)
T PRK08445 203 MF--GT----VENDEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKN 276 (348)
T ss_pred Ee--cC----CCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 53 32 23556666666666665443 221 12221 137788888888888776675 22
Q ss_pred EEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 218 LAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 218 l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
|..-. ...|.. .+..|+.+||+-+++|+..=---+.|....+ .+.|+++.+.+..|+.
T Consensus 277 i~a~~-~~~g~~--~~~~~L~~Gand~~gt~~~e~i~~~ag~~~~-~~~~~~~~~i~~~g~~ 334 (348)
T PRK08445 277 IQSSW-VTQGSY--IGQLALLFGANDLGSTMMEENVVKAAGASFR-MNQAEMIELIKDIGEI 334 (348)
T ss_pred ccCCC-cccCHH--HHHHHHhcCCccCccccccccchhccCCCCC-CCHHHHHHHHHHcCCC
Confidence 22222 133443 3578899999999999864221122222233 5678999888887764
No 107
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=97.24 E-value=0.027 Score=52.58 Aligned_cols=113 Identities=22% Similarity=0.278 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----C--CCChHHHHHHHHHHHHcCcCE--EEecCCCCcc-----
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----G--AVPPHNVTRVATALYKMGCYE--ISLGDTIGVG----- 197 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----~--r~~~e~l~~~~~~~~~~g~~~--i~l~Dt~G~~----- 197 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. . .++|++..++++ +.|+|. +.+.-..|.-
T Consensus 121 ~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~~ 197 (321)
T PRK07084 121 YEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVK---KTGVDSLAISIGTSHGAYKFKPG 197 (321)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHH---HhCCCEEeeccccccccccCCCC
Confidence 45568889999999999999999888875444432 1 356766666554 468885 4444566653
Q ss_pred --CHHHHHHHHHHHHHhcCCCeEEEeecC-------------------CcCcHHHHHHHHHHhcCceeee
Q psy12516 198 --TPGTMRLMLEDVLTVIPADRLAVHCHD-------------------TYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 198 --~P~~~~~~~~~~~~~~~~~~l~~H~Hn-------------------~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.|.==.++++.+++.++++||.+|.=. ++|..-.....|++.|+..|..
T Consensus 198 ~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi 267 (321)
T PRK07084 198 QCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINI 267 (321)
T ss_pred CCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceecc
Confidence 233334567788888866899999876 3388888999999999887653
No 108
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.17 E-value=0.042 Score=50.57 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCE--EEecCCCCcc--C
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYE--ISLGDTIGVG--T 198 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~--i~l~Dt~G~~--~ 198 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..++++ +.|+|. +.+.-..|.- .
T Consensus 110 ~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~ 186 (284)
T PRK09195 110 FAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVE---ATGIDSLAVAIGTAHGMYKGE 186 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHH---HHCcCEEeeccCccccccCCC
Confidence 34568889999999999999998888775444332 1357776666554 568885 4444456652 3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 199 PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
|.==.++++.+++..+ +||.+|.=. |..-.....|++.|+..|..
T Consensus 187 p~Ld~~~L~~I~~~~~-vPLVLHGgS--G~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK09195 187 PKLDFDRLENIRQWVN-IPLVLHGAS--GLPTKDIQQTIKLGICKVNV 231 (284)
T ss_pred CcCCHHHHHHHHHHhC-CCeEEecCC--CCCHHHHHHHHHcCCeEEEe
Confidence 4333345677777664 688877654 66678888999999887654
No 109
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=97.15 E-value=0.11 Score=48.97 Aligned_cols=113 Identities=18% Similarity=0.314 Sum_probs=76.2
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCC-------CC-----------CCCChHHHHHHHHHHHHcCcCE--EE
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCP-------YE-----------GAVPPHNVTRVATALYKMGCYE--IS 189 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~-------~~-----------~r~~~e~l~~~~~~~~~~g~~~--i~ 189 (327)
+.+|+++..++++++|+..|+.|++-|...-+.+ +. ..++|++..++++ +.|+|. +.
T Consensus 115 p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAva 191 (347)
T TIGR01521 115 DYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVK---KTKVDALAVA 191 (347)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHHHHHHH---HHCcCEEehh
Confidence 3456688899999999999999998887753332 11 1346665555443 558885 44
Q ss_pred ecCCCCccC----H----HHHHHHHHHHHHhcCCCeEEEeecCCc-------------------CcHHHHHHHHHHhcCc
Q psy12516 190 LGDTIGVGT----P----GTMRLMLEDVLTVIPADRLAVHCHDTY-------------------GQALANILTAMEFGIS 242 (327)
Q Consensus 190 l~Dt~G~~~----P----~~~~~~~~~~~~~~~~~~l~~H~Hn~~-------------------g~a~an~l~a~~~G~~ 242 (327)
+.-..|.-. | .+ .++++.+++.++++||.+|.=... |.--.....|++.|+.
T Consensus 192 iGt~HG~Yk~~~~p~~~~Ld-~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~ 270 (347)
T TIGR01521 192 IGTSHGAYKFTRKPTGEVLA-IQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVR 270 (347)
T ss_pred cccccCCcCCCCCCChhhcC-HHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCe
Confidence 445666542 4 23 335688888886689999876532 3446788899999988
Q ss_pred eeee
Q psy12516 243 VFDS 246 (327)
Q Consensus 243 ~vd~ 246 (327)
.|..
T Consensus 271 KVNi 274 (347)
T TIGR01521 271 KVNI 274 (347)
T ss_pred eEEe
Confidence 7653
No 110
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.12 E-value=0.061 Score=49.35 Aligned_cols=110 Identities=19% Similarity=0.246 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC------CCCChHHHHHHHHHHHHcCcCEE--EecCCCCcc---CH
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE------GAVPPHNVTRVATALYKMGCYEI--SLGDTIGVG---TP 199 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~------~r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~~---~P 199 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..+++++ .|+|.+ .+.-..|.- .|
T Consensus 105 ~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~---TgvD~LAvsiGt~HG~Y~~~~p 181 (276)
T cd00947 105 FEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEE---TGVDALAVAIGTSHGAYKGGEP 181 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHH---HCCCEEEeccCccccccCCCCC
Confidence 45668899999999999999999888875444432 13567776666554 588854 444455543 45
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 200 GTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.==.++++.+++.++ +||.+|.= -|..-.....|++.|+..|..
T Consensus 182 ~L~~~~L~~i~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 182 KLDFDRLKEIAERVN-VPLVLHGG--SGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred ccCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEe
Confidence 444456777777764 68877664 477777888999999987654
No 111
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.11 E-value=0.09 Score=48.45 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----C----CCChHHHHHHHHHHHHcCcCEE--EecCCCCcc--C
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----G----AVPPHNVTRVATALYKMGCYEI--SLGDTIGVG--T 198 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----~----r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~~--~ 198 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. . .++|++..+++ .+.|+|.+ .+.-..|.- .
T Consensus 110 ~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~Y~~~ 186 (286)
T PRK12738 110 FAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFV---ELTGVDSLAVAIGTAHGLYSKT 186 (286)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHH---HHhCCCEEEeccCcccCCCCCC
Confidence 34568889999999999999999888875444432 0 35666666554 35589854 444455543 3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 199 PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
|.==.++++.+++.. ++||.+|.=. |..-.+...|++.|+..|..
T Consensus 187 p~Ldfd~l~~I~~~~-~vPLVLHGgS--G~~~e~~~kai~~GI~KiNi 231 (286)
T PRK12738 187 PKIDFQRLAEIREVV-DVPLVLHGAS--DVPDEFVRRTIELGVTKVNV 231 (286)
T ss_pred CcCCHHHHHHHHHHh-CCCEEEeCCC--CCCHHHHHHHHHcCCeEEEe
Confidence 544455677777776 4688877654 55577888899999887653
No 112
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=97.09 E-value=0.03 Score=49.63 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=56.0
Q ss_pred HHHHHHHHcCcCEEEecCCc----cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTI----GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~----G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+-+..+.+.|+|.|-++|.. |-..||.++++++.+....|- ..+|=.. ...|.....++.+...|+++|.+++.
T Consensus 11 ~EA~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp-~~p~~~~~aa~~~a~~GvdyvKvGl~ 89 (235)
T PF04476_consen 11 EEAEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLP-MKPGTASLAALGAAATGVDYVKVGLF 89 (235)
T ss_pred HHHHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCC-CCchHHHHHHHHHHhcCCCEEEEecC
Confidence 45677888899999999998 889999999887766544331 1232222 33466555666667899999999888
Q ss_pred CCCC
Q psy12516 77 GLGG 80 (327)
Q Consensus 77 glg~ 80 (327)
|.+.
T Consensus 90 g~~~ 93 (235)
T PF04476_consen 90 GCKD 93 (235)
T ss_pred CCCC
Confidence 6653
No 113
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.07 E-value=0.086 Score=48.51 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCEE--EecCCCCcc--C
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYEI--SLGDTIGVG--T 198 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~~--~ 198 (327)
.+|+++..++++++|+..|+.|++-|...-|.++. ..++|++..+++ .+.|+|.+ .+.-..|.- .
T Consensus 108 ~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~yk~~ 184 (282)
T TIGR01858 108 FAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFV---EATGVDSLAVAIGTAHGLYKKT 184 (282)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHH---HHHCcCEEecccCccccCcCCC
Confidence 35568889999999999999999888875444432 135666666554 46789954 444455532 2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 199 PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
|.==.++++.+++.++ +||.+|.=. |..-.....|+..|+..|..
T Consensus 185 p~Ldf~~L~~I~~~~~-iPLVlHGgS--G~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 185 PKLDFDRLAEIREVVD-VPLVLHGAS--DVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CccCHHHHHHHHHHhC-CCeEEecCC--CCCHHHHHHHHHcCCeEEEe
Confidence 4333346677777764 688777644 55677888899999987653
No 114
>PRK08508 biotin synthase; Provisional
Probab=97.07 E-value=0.14 Score=47.02 Aligned_cols=130 Identities=12% Similarity=-0.009 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe------cCCC---CccCHHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL------GDTI---GVGTPGTMRLM 205 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l------~Dt~---G~~~P~~~~~~ 205 (327)
++...+.++.+++.|+++...+..-. -=+++++.+.+..+.+.+++.|-+ ..|- ...+|.++.+.
T Consensus 136 ~~~~l~~i~~a~~~Gi~v~sg~I~Gl------GEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~ 209 (279)
T PRK08508 136 WEERFQTCENAKEAGLGLCSGGIFGL------GESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEALEI 209 (279)
T ss_pred HHHHHHHHHHHHHcCCeecceeEEec------CCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHH
Confidence 45566678889999998876544322 135788888999999998884322 1221 23678899999
Q ss_pred HHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 206 LEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 206 ~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
++..|-.+|+..|-+-.=-. .+--..-..++.+|++-+=+ |-== .+.+.+.++=+.+++++|+..
T Consensus 210 iAv~Rl~lp~~~i~~~~gr~-~~~~~~~~~~~~~g~n~~~~---g~~l------t~~g~~~~~d~~~~~~~~~~~ 274 (279)
T PRK08508 210 VRLAKEALPNARLMVAGGRE-VVFGERQYEIFEAGANAIVI---GDYL------TTKGEAPKKDIEKLKSLGFEI 274 (279)
T ss_pred HHHHHHHCCCceeeecCChh-hhchhhHHHHHhcCCcceee---cCcc------cCCCCChHHHHHHHHHcCCCc
Confidence 98888888876665533110 00011235577888775211 1111 233456666677888888764
No 115
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=97.04 E-value=0.068 Score=49.38 Aligned_cols=111 Identities=23% Similarity=0.280 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC---------CCChHHHHHHHHHHHHcCcCEE--EecCCCCc--c
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG---------AVPPHNVTRVATALYKMGCYEI--SLGDTIGV--G 197 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~---------r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~--~ 197 (327)
.+|+++..++++++|++.|+.|++-+...-|.++.. .++|++..+++ .+.|+|.+ .+.-..|. .
T Consensus 109 ~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv---~~TgvD~LAvaiGt~HG~y~~ 185 (287)
T PF01116_consen 109 FEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFV---EETGVDALAVAIGTAHGMYKG 185 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHH---HHHTTSEEEE-SSSBSSSBSS
T ss_pred HHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHH---HHhCCCEEEEecCccccccCC
Confidence 355688899999999999999999888765444321 24666665554 45689954 44455553 3
Q ss_pred --CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 198 --TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 198 --~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.|.==.++++.+++..|++||.+|. --|+.-.....+++.|+..|..
T Consensus 186 ~~~p~Ld~~~L~~I~~~~~~iPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi 234 (287)
T PF01116_consen 186 GKKPKLDFDRLKEIREAVPDIPLVLHG--GSGLPDEQIRKAIKNGISKINI 234 (287)
T ss_dssp SSSTC--HHHHHHHHHHHHTSEEEESS--CTTS-HHHHHHHHHTTEEEEEE
T ss_pred CCCcccCHHHHHHHHHhcCCCCEEEEC--CCCCCHHHHHHHHHcCceEEEE
Confidence 4443456788888887557887765 4567777889999999887654
No 116
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.03 E-value=0.12 Score=48.09 Aligned_cols=110 Identities=21% Similarity=0.236 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCE--EEecCCCCccC---
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYE--ISLGDTIGVGT--- 198 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~--i~l~Dt~G~~~--- 198 (327)
+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..++++ +.|+|. +.+.-+.|.-.
T Consensus 111 eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~ 187 (307)
T PRK05835 111 EENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVK---ESQVDYLAPAIGTSHGAFKFKG 187 (307)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHH---hhCCCEEEEccCccccccCCCC
Confidence 4558889999999999999999888775444332 0345665555443 568985 44555666543
Q ss_pred -HHHHHHHHHHHHHhcCCCeEEEeecCCc-------------------CcHHHHHHHHHHhcCceee
Q psy12516 199 -PGTMRLMLEDVLTVIPADRLAVHCHDTY-------------------GQALANILTAMEFGISVFD 245 (327)
Q Consensus 199 -P~~~~~~~~~~~~~~~~~~l~~H~Hn~~-------------------g~a~an~l~a~~~G~~~vd 245 (327)
|.==-++++.+++.+ ++||.+|.=... |-.+-....|++.|+..|.
T Consensus 188 ~p~L~f~~L~~I~~~~-~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiN 253 (307)
T PRK05835 188 EPKLDFERLQEVKRLT-NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVN 253 (307)
T ss_pred CCccCHHHHHHHHHHh-CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEE
Confidence 433344677777776 478999875543 3334577778888887764
No 117
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.99 E-value=0.11 Score=47.96 Aligned_cols=111 Identities=18% Similarity=0.257 Sum_probs=75.9
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC---C-----CCChHHHHHHHHHHHHcCcCEEE--ecCCCCcc--
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE---G-----AVPPHNVTRVATALYKMGCYEIS--LGDTIGVG-- 197 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~---~-----r~~~e~l~~~~~~~~~~g~~~i~--l~Dt~G~~-- 197 (327)
+.+|+++..++++++|+..|+.|++-+...-|.++. . .++|+...++++ +.|+|.+. +.-..|.-
T Consensus 109 p~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~y~~ 185 (284)
T PRK12857 109 PLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVE---ETGVDALAIAIGTAHGPYKG 185 (284)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHH---HHCCCEEeeccCccccccCC
Confidence 345668999999999999999999888875444332 0 356666665553 55888544 44455543
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 198 TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 198 ~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.|.==.++++.+++.++ +||.+|.= -|..-.....|++.|+..|..
T Consensus 186 ~p~Ld~~~L~~i~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK12857 186 EPKLDFDRLAKIKELVN-IPIVLHGS--SGVPDEAIRKAISLGVRKVNI 231 (284)
T ss_pred CCcCCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEe
Confidence 35433456777777764 68877654 477788889999999887653
No 118
>PLN02389 biotin synthase
Probab=96.94 E-value=0.33 Score=46.65 Aligned_cols=132 Identities=13% Similarity=0.059 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc--CcCEEEe------cCC----CCccCHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM--GCYEISL------GDT----IGVGTPGTM 202 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~--g~~~i~l------~Dt----~G~~~P~~~ 202 (327)
++...+.++.+++.|+++...+. +|- . -+.++..+....+.++ .++.+.+ +.| ....+|.+.
T Consensus 212 ~e~rl~ti~~a~~~Gi~v~sg~I--iGl-g---Et~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~ 285 (379)
T PLN02389 212 YDDRLETLEAVREAGISVCSGGI--IGL-G---EAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEM 285 (379)
T ss_pred HHHHHHHHHHHHHcCCeEeEEEE--ECC-C---CCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHH
Confidence 56667789999999999876544 332 1 3566777777788777 4565543 244 124778899
Q ss_pred HHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 203 RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
.+++...|-.+|+..+.+-.-- .-+.......++.+||+-+=+ |. +-- .+.+.+.++=+.+++++|+...
T Consensus 286 lr~iAi~Rl~lP~~~i~i~~gr-~~l~~~~~~~~l~~GAN~~~~-----g~--~~L-tt~g~~~~~d~~~~~~lg~~~~ 355 (379)
T PLN02389 286 VRMIATARIVMPKAMVRLSAGR-VRFSMAEQALCFLAGANSIFT-----GD--KLL-TTPNNDFDADQAMFKELGLIPK 355 (379)
T ss_pred HHHHHHHHHHCCCccccccccc-cccChhHHHHHHHhCCCEEEE-----CC--ccc-CCCCCChHHHHHHHHHcCCCcc
Confidence 9999998888887433221111 112223457889999986432 11 000 2344556666778888888754
No 119
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.89 E-value=0.24 Score=45.85 Aligned_cols=109 Identities=23% Similarity=0.294 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----CC-CChHHHHHHHHHHHHcCcCEEEec--CCCCcc---CHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----GA-VPPHNVTRVATALYKMGCYEISLG--DTIGVG---TPGT 201 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----~r-~~~e~l~~~~~~~~~~g~~~i~l~--Dt~G~~---~P~~ 201 (327)
+|.++..++++++|+..|..+.+-+....|.++. +. +++++..++. +.|+|.|.++ -..|.- +|.-
T Consensus 113 eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~----~tgvD~LAv~iG~vHG~y~t~~k~l 188 (293)
T PRK07315 113 EENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV----ETGIDFLAAGIGNIHGPYPENWEGL 188 (293)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHH----HcCCCEEeeccccccccCCCCCCcC
Confidence 4557888999999999999988777765443432 22 6777765544 5799988887 665543 2422
Q ss_pred HHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 202 MRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
=.++++.+++..+++||.+|.-. |....|...+++.|+..|..
T Consensus 189 ~~e~L~~i~~~~~~iPlVlhGGS--Gi~~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 189 DLDHLEKLTEAVPGFPIVLHGGS--GIPDDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CHHHHHHHHHhccCCCEEEECCC--CCCHHHHHHHHHcCCCEEEE
Confidence 34467888887766789887753 67789999999999998654
No 120
>PRK06256 biotin synthase; Validated
Probab=96.87 E-value=0.33 Score=45.72 Aligned_cols=127 Identities=16% Similarity=0.093 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe------cCC----CCccCHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL------GDT----IGVGTPGTMRL 204 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l------~Dt----~G~~~P~~~~~ 204 (327)
++...+.++.+++.|+++...+. +|. .-+.+.+.+.++.+.+.+++.+.+ +.| ....+|.++.+
T Consensus 186 ~~~~i~~i~~a~~~Gi~v~~~~I--~Gl----gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~ 259 (336)
T PRK06256 186 YEDRIDTCEMVKAAGIEPCSGGI--IGM----GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLK 259 (336)
T ss_pred HHHHHHHHHHHHHcCCeeccCeE--EeC----CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHH
Confidence 45667788899999998765544 331 246788888899999999886654 233 12467889999
Q ss_pred HHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee--ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 205 MLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS--SIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 205 ~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~--s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
+++.+|-.+|+..|-+-..-..-+.-.- -.++ +||+-+=+ -+. ..|+..-++ +.+++++|+..
T Consensus 260 ~ia~~Rl~~p~~~I~~~~gr~~~~~~~~-~~~~-~g~~~~~~g~~lt----------~~g~~~~~d-~~~~~~~g~~~ 324 (336)
T PRK06256 260 TIAIFRLINPDKEIRIAGGREVNLRSLQ-PLGL-GGANSVIVGNYLT----------TVGQPATAD-LDMIEDLGFEI 324 (336)
T ss_pred HHHHHHHHCCCCeeEecCchhhhchhhH-HHHh-ccCceeeECCccc----------CCCCChHHH-HHHHHHCCCCc
Confidence 9999998889877776655422222111 2223 57765322 121 356665544 45788888775
No 121
>PRK09234 fbiC FO synthase; Reviewed
Probab=96.86 E-value=0.1 Score=55.15 Aligned_cols=224 Identities=17% Similarity=0.197 Sum_probs=128.8
Q ss_pred HHHHHHHHcCcCEEEecCCccc---cCHHHHHHHHHHHHhhcCCCeeEEEec---------CccchHHHHHHHHH-HcCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGV---GTPGTMRLMLEDVLTVIPADRLAVHCH---------DTYGQALANILTAM-EFGI 68 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~---~~p~~~~~~~~~~~~~~~~~~~~~H~h---------~~~g~~~~~~~~a~-~aG~ 68 (327)
+.++++.+.|+.+|++. .|. .....+.++++.+++.+|+ +.+|.- ...|+.....+..+ ++|.
T Consensus 564 ~~a~ea~~~G~tev~i~--gG~~p~~~~~~y~~lir~IK~~~p~--i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGL 639 (843)
T PRK09234 564 DRAWEAWVAGATEVCMQ--GGIHPELPGTGYADLVRAVKARVPS--MHVHAFSPMEIVNGAARLGLSIREWLTALREAGL 639 (843)
T ss_pred HHHHHHHHCCCCEEEEe--cCCCCCcCHHHHHHHHHHHHHhCCC--eeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 45677888999999998 344 2345567788888888874 333332 33556566666666 4666
Q ss_pred cEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 69 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 69 ~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
+.+- |-++ ...+ +++-..+ . .+ ..+ .+...++++.|++.
T Consensus 640 ds~p----gt~a--------eil~-d~vr~~i----~-p~-------------------k~~----~~~wle~i~~Ah~l 678 (843)
T PRK09234 640 DTIP----GTAA--------EILD-DEVRWVL----T-KG-------------------KLP----TAEWIEVVTTAHEV 678 (843)
T ss_pred CccC----CCch--------hhCC-HHHHhhc----C-CC-------------------CCC----HHHHHHHHHHHHHc
Confidence 5543 1110 1111 1110000 0 00 011 22335678889999
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC------EEE----ecCC----C----CccCHHHHHHHHHHHH
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY------EIS----LGDT----I----GVGTPGTMRLMLEDVL 210 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~------~i~----l~Dt----~----G~~~P~~~~~~~~~~~ 210 (327)
|+++...+++ | ..-++++..+....+.+++.+ -|- -.+| . ...++.+...+++..|
T Consensus 679 Gi~~~stmm~--G----~~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaR 752 (843)
T PRK09234 679 GLRSSSTMMY--G----HVDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALAR 752 (843)
T ss_pred CCCcccceEE--c----CCCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHH
Confidence 9998766554 3 224678888888888887653 111 2232 1 2367888888888877
Q ss_pred HhcCCC--eEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCC
Q psy12516 211 TVIPAD--RLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYMLEGMGIE 279 (327)
Q Consensus 211 ~~~~~~--~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l~~~g~~ 279 (327)
-.+|+. +|..-. ..+| ......++.+||+-+.+|+..----+.|....| ..+.+++....+..|+.
T Consensus 753 l~Lp~~i~~Iqa~w-v~lg--~~~~q~~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~ 821 (843)
T PRK09234 753 IMLHGRIDNIQTSW-VKLG--VEGTRAMLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRP 821 (843)
T ss_pred HhCCCCcccccchh-hhcC--HHHHHHHHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 666641 233222 2333 334578899999988877642111122221233 45789999888887754
No 122
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.79 E-value=0.22 Score=45.87 Aligned_cols=109 Identities=24% Similarity=0.260 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----C--CCChHHHHHHHHHHHHcCcCE--EEecCCCCcc--CHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----G--AVPPHNVTRVATALYKMGCYE--ISLGDTIGVG--TPGT 201 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----~--r~~~e~l~~~~~~~~~~g~~~--i~l~Dt~G~~--~P~~ 201 (327)
+|+++..++++++|+..|+.|++-+...-|.++. . .++|++..++++ +.|+|. +.+.-..|.- .|.-
T Consensus 114 eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~L 190 (285)
T PRK07709 114 EENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVE---ATGIDCLAPALGSVHGPYKGEPNL 190 (285)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHH---HhCCCEEEEeecccccCcCCCCcc
Confidence 4558889999999999999999888875444432 1 367777666554 458985 4444455542 3433
Q ss_pred HHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 202 MRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
=.++++.+++.+ ++||.+|.= .|..-.....|++.|+..|..
T Consensus 191 ~~~~L~~I~~~~-~iPLVLHGg--SG~~~e~~~~ai~~Gi~KiNi 232 (285)
T PRK07709 191 GFAEMEQVRDFT-GVPLVLHGG--TGIPTADIEKAISLGTSKINV 232 (285)
T ss_pred CHHHHHHHHHHH-CCCEEEeCC--CCCCHHHHHHHHHcCCeEEEe
Confidence 334567777766 468877654 577778888999999877643
No 123
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.78 E-value=0.12 Score=46.16 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=45.5
Q ss_pred HHHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHH-HHHHcCCcEEE
Q psy12516 2 KVASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANIL-TAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~-~a~~aG~~~id 72 (327)
+.++++.+.|+| .+-+.| |...|.-. .+.++++++..|..++..|.|-+. ..+.+ ...++|++++-
T Consensus 23 ~~~~~l~~~~~~~~H~DimD--g~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~---p~~~i~~~~~~Gad~it 93 (228)
T PTZ00170 23 DEAQDVLSGGADWLHVDVMD--GHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSN---PEKWVDDFAKAGASQFT 93 (228)
T ss_pred HHHHHHHHcCCCEEEEeccc--CccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCC---HHHHHHHHHHcCCCEEE
Confidence 346778888998 578888 77777632 356888888887788999999332 22333 33367888764
No 124
>PRK06801 hypothetical protein; Provisional
Probab=96.74 E-value=0.39 Score=44.30 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC----------CCChHHHHHHHHHHHHcCcCEEEe--cCCCCcc--
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG----------AVPPHNVTRVATALYKMGCYEISL--GDTIGVG-- 197 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~----------r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~-- 197 (327)
+|.++..++++++|+..|+.|.+-+... |..+.+ .++|++..++.+ +.|+|.+.+ .-+.|.-
T Consensus 111 eeNi~~t~~v~~~a~~~gv~VE~ElG~v-gg~e~~v~~~~~~~~~~T~pe~a~~f~~---~tgvD~LAvaiGt~Hg~y~~ 186 (286)
T PRK06801 111 EENVRQTREVVKMCHAVGVSVEAELGAV-GGDEGGALYGEADSAKFTDPQLARDFVD---RTGIDALAVAIGNAHGKYKG 186 (286)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeecCcc-cCCCCCcccCCcccccCCCHHHHHHHHH---HHCcCEEEeccCCCCCCCCC
Confidence 3447778889999999999887766653 322211 234455444443 569997766 2233321
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 198 TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 198 ~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.|.-=.++++.+++..+ +||.+|.=. |....+...++++|++.|..
T Consensus 187 ~~~l~~e~l~~i~~~~~-~PLVlHGGS--gi~~e~~~~~i~~Gi~KINv 232 (286)
T PRK06801 187 EPKLDFARLAAIHQQTG-LPLVLHGGS--GISDADFRRAIELGIHKINF 232 (286)
T ss_pred CCCCCHHHHHHHHHhcC-CCEEEECCC--CCCHHHHHHHHHcCCcEEEe
Confidence 12122334666666654 688877643 56788999999999998754
No 125
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=96.72 E-value=0.14 Score=49.03 Aligned_cols=231 Identities=13% Similarity=0.071 Sum_probs=123.6
Q ss_pred HHHHHHHHcCcCEEEecCCcccc---CHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~---~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
+.++++.+.|+.+|.|.= |.- ++.-..++++.+++.+| .++.|.+.... +..+
T Consensus 97 ~~~~~~~~~G~~Evli~g--G~~p~~~~~y~~~~~~~ik~~~p--~~~i~a~s~~e--------------------i~~~ 152 (370)
T COG1060 97 EEVREAVKRGITEVLIVG--GEHPELSLEYYEELFRTIKEEFP--DLHIHALSAGE--------------------ILFL 152 (370)
T ss_pred HHHHHHHHcCCeEEEEec--CcCCCcchHHHHHHHHHHHHhCc--chhhcccCHHH--------------------hHHH
Confidence 345556666777666632 221 12234555666666665 34444444332 2222
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhh--hhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFA--SASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYI 156 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~--~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l 156 (327)
. +.+.++.++++..|+.. |+|.+--.. -.++...+.-. ......+.-.++.+.|++.|++..+..
T Consensus 153 ~-------~~~~~s~~E~l~~Lk~a----Gldsmpg~~aeil~e~vr~~~~--p~K~~~~~wle~~~~Ah~lGI~~tatm 219 (370)
T COG1060 153 A-------REGGLSYEEVLKRLKEA----GLDSMPGGGAEILSEEVRKIHC--PPKKSPEEWLEIHERAHRLGIPTTATM 219 (370)
T ss_pred H-------hccCCCHHHHHHHHHHc----CCCcCcCcceeechHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCCcccee
Confidence 2 34567778877777644 444332111 01121111111 222224456677899999999987766
Q ss_pred eeeccCCCCCCCChHHHHHHHHHHHH----c-CcCEEEe-----cCC------CCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 157 SCVVGCPYEGAVPPHNVTRVATALYK----M-GCYEISL-----GDT------IGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 157 ~~~~g~~~~~r~~~e~l~~~~~~~~~----~-g~~~i~l-----~Dt------~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
.+-. --++++...-...+.+ . |...+.+ ..+ ..-.++.++...++..|-.++. .+..
T Consensus 220 l~Gh------~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~-~i~~ 292 (370)
T COG1060 220 LLGH------VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDN-NISN 292 (370)
T ss_pred EEEe------cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccC-cccc
Confidence 6522 1234444444444443 2 3332222 122 1224556666666666644442 2222
Q ss_pred eecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-----CccHHHHHHHHHhCCCCC
Q psy12516 221 HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-----NVATEDLVYMLEGMGIET 280 (327)
Q Consensus 221 H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-----n~~~e~~~~~l~~~g~~~ 280 (327)
.---...+++.-...++.+|++-+.++... |+-. + .+| +.+.|+++..+++.|+..
T Consensus 293 ~~a~w~~~g~~~~~~~l~~GanD~ggt~~~--E~v~-~-~a~~~~~~~~~~eel~~~i~~aG~~p 353 (370)
T COG1060 293 IQASWLRDGVILAQAALLSGANDLGGTGYE--EKVN-P-AAGAFSGDWRSVEELAALIKEAGRIP 353 (370)
T ss_pred ccCcccccchHHHHHHHHhCcccCcCCCcc--cccc-c-ccccccCCCCCHHHHHHHHHHcCCCe
Confidence 222244566677889999999988888776 5311 1 244 889999999999988765
No 126
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.69 E-value=0.22 Score=45.90 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCEEEe--cCCCCcc--C
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYEISL--GDTIGVG--T 198 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~--~ 198 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..++++. .|+|.+.+ .-..|.- .
T Consensus 110 ~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~ 186 (284)
T PRK12737 110 FEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVER---TGIDSLAVAIGTAHGLYKGE 186 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHH---hCCCEEeeccCccccccCCC
Confidence 45668889999999999999999888875444432 14577776666554 68985444 4455653 3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 199 PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
|.==.++++.+++..+ +||.+|. .-|..-.....|++.|+..|..
T Consensus 187 p~Ld~~~L~~I~~~~~-iPLVlHG--gSG~~~e~~~kai~~Gi~KiNi 231 (284)
T PRK12737 187 PKLDFERLAEIREKVS-IPLVLHG--ASGVPDEDVKKAISLGICKVNV 231 (284)
T ss_pred CcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHCCCeEEEe
Confidence 4323345777776654 6887765 4466677888899999987654
No 127
>PLN02433 uroporphyrinogen decarboxylase
Probab=96.66 E-value=0.097 Score=49.68 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=92.3
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHH--------HHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLML--------EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~--------~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++...++|++.+.+.|+. |.++|...++.+ +.+++..+..++.+|.+.+. ..+.-+ +.|++.+
T Consensus 183 ~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~-----~~~~~~~~~~~~~i 257 (345)
T PLN02433 183 EYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG-----GLLERLAGTGVDVI 257 (345)
T ss_pred HHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH-----HHHHHHHhcCCCEE
Confidence 56777788999999999965 888898866443 34444333456778877653 334444 5688766
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
.. +. +.++++....+.+ ..+.-+++.. .+.-+++++.+..+++++.+...|
T Consensus 258 ~~-----d~---------~~dl~e~~~~~g~~~~l~GNi~p~-------------ll~gt~e~i~~~v~~~i~~~~~~g- 309 (345)
T PLN02433 258 GL-----DW---------TVDMADARRRLGSDVAVQGNVDPA-------------VLFGSKEAIEKEVRDVVKKAGPQG- 309 (345)
T ss_pred Ec-----CC---------CCCHHHHHHHhCCCeEEEeCCCch-------------hhCCCHHHHHHHHHHHHHHcCCCC-
Confidence 52 21 2456665555442 2333334432 123456667777888888754444
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY 186 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~ 186 (327)
.+. ..||.....+++|.+..+.+.+.++|..
T Consensus 310 ~Il-----~~Gc~i~~~tp~eNi~a~v~av~~~~~~ 340 (345)
T PLN02433 310 HIL-----NLGHGVLVGTPEENVAHFFDVARELRYE 340 (345)
T ss_pred eEE-----ecCCCCCCCCCHHHHHHHHHHHHHhChh
Confidence 322 2556555578999999999999987754
No 128
>PRK05927 hypothetical protein; Provisional
Probab=96.62 E-value=0.29 Score=46.53 Aligned_cols=232 Identities=13% Similarity=0.087 Sum_probs=125.1
Q ss_pred HHHHHHHHcCcCEEEecCCcccc---CHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~---~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
+.++++.+.|+.++.+ +.|.- +.+.+.++++.+++.+|+ +|.|-..- ++.+. +
T Consensus 83 ~~a~~~~~~G~~~i~i--~gG~~p~~~~e~~~~~i~~ik~~~p~----l~~~~~s~----------------~ei~~--~ 138 (350)
T PRK05927 83 SLMQRYVSAGVKTVLL--QGGVHPQLGIDYLEELVRITVKEFPS----LHPHFFSA----------------VEIAH--A 138 (350)
T ss_pred HHHHHHHHCCCCEEEE--eCCCCCCCCHHHHHHHHHHHHHHCCC----CcccCCCH----------------HHHHH--H
Confidence 5677788889999998 45553 244567778888887763 33332211 11110 0
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhh--hhhhhhHHHHHHhhcCChHH-HHHHHHHHHHHHHHcCCeEEEE
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIA--VFASASEMFSKRNINCTIEE-SLERFSEVVSTALTNGIRVRGY 155 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~--l~~~~sd~~~~~~l~~s~ee-~i~~~~~~v~~a~~~Gi~v~~~ 155 (327)
-. ..|.. +++.+..|++.++ +.+. -....++.+.+. .++.. ..++-.++++.|++.|+++...
T Consensus 139 ~~------~~G~~-~~e~l~~Lk~aGl----~~l~g~~~Et~~~~~~~~---~~p~k~~~~~rl~~i~~A~~lGi~~~sg 204 (350)
T PRK05927 139 AQ------VSGIS-TEQALERLWDAGQ----RTIPGGGAEILSERVRKI---ISPKKMGPDGWIQFHKLAHRLGFRSTAT 204 (350)
T ss_pred HH------hcCCC-HHHHHHHHHHcCc----ccCCCCCchhCCHHHhhc---cCCCCCCHHHHHHHHHHHHHcCCCcCce
Confidence 00 12223 4444454544433 3221 111112222111 11111 1345667899999999998766
Q ss_pred EeeeccCCCCCCCChHHHHHHHHHHHHcCcC--EEE--ec------CCC---C---ccCHHHHHHHHHHHHHhcCCCeEE
Q psy12516 156 ISCVVGCPYEGAVPPHNVTRVATALYKMGCY--EIS--LG------DTI---G---VGTPGTMRLMLEDVLTVIPADRLA 219 (327)
Q Consensus 156 l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~--~i~--l~------Dt~---G---~~~P~~~~~~~~~~~~~~~~~~l~ 219 (327)
+.+-.| =+.++..+....+.+++-+ -+. |+ +|- . ..+|.+..+.++..|-.+|+++.
T Consensus 205 ~l~G~g------Et~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~- 277 (350)
T PRK05927 205 MMFGHV------ESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDH- 277 (350)
T ss_pred eEEeeC------CCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCc-
Confidence 554222 2455555555556555411 111 23 342 1 47888988988888877786542
Q ss_pred EeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 220 VHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 220 ~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
.-. --..++...+..++.+||+-+++++..-=--|.++...+ .+++++...++..|+..
T Consensus 278 i~~-~w~~~G~~~~q~~L~~GanDlggt~~~e~v~~~ag~~~~-~~~~~l~~~i~~~G~~~ 336 (350)
T PRK05927 278 IAA-SWFGEGKEEGAKGLHYGADDFGGTILDESVHKCTGWDLQ-SSEEEICAMILSEGFIP 336 (350)
T ss_pred ccC-CccccCHHHHHHHHhCCCccccCCCccceeeccCCCCCc-CCHHHHHHHHHHcCCCe
Confidence 111 112344566778999999999988742211122222222 36888888888877654
No 129
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=96.56 E-value=0.11 Score=49.28 Aligned_cols=145 Identities=18% Similarity=0.210 Sum_probs=85.1
Q ss_pred HHHHHHHHcCcCEEEecCC-ccccCHHHHHHHH--------HHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDT-IGVGTPGTMRLML--------EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt-~G~~~p~~~~~~~--------~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++...++|+|.|.+.|+ .+.++|...++.+ +.+++..|..+ .+|...+.. +.+..+ +.|++.+
T Consensus 190 ~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~-ilh~cg~~~----~~~~~~~~~~~~~i 264 (346)
T PRK00115 190 AYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVP-VILFGKGAG----ELLEAMAETGADVV 264 (346)
T ss_pred HHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcCCcH----HHHHHHHhcCCCEE
Confidence 5677788899999999994 5888998866554 33333322233 445444332 334445 5677766
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
... . ..++++....+.+ ..+.-|++... +..+++++.+..+++++.+...|+
T Consensus 265 s~d-----~---------~~dl~~~k~~~g~~~~i~Gni~p~l-------------l~gt~e~i~~~~~~~i~~~~~~gf 317 (346)
T PRK00115 265 GLD-----W---------TVDLAEARRRVGDKKALQGNLDPAV-------------LLAPPEAIEEEVRAILDGGGGPGH 317 (346)
T ss_pred eeC-----C---------CCCHHHHHHHcCCCeEEEeCCChhH-------------hcCCHHHHHHHHHHHHHHhCCCCe
Confidence 421 1 2455555554443 33333444311 112456677778888887743342
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
-+ +.||.....+++|.+..+.+.+.+++
T Consensus 318 Il------~~Gc~i~~~tp~eNi~a~v~a~~~y~ 345 (346)
T PRK00115 318 IF------NLGHGILPETPPENVKALVEAVHELS 345 (346)
T ss_pred ee------ecCCcCCCCcCHHHHHHHHHHHHHhc
Confidence 22 24565444689999999998887754
No 130
>PRK08185 hypothetical protein; Provisional
Probab=96.53 E-value=0.42 Score=44.04 Aligned_cols=110 Identities=19% Similarity=0.291 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCC-CC-----C---CCChHHHHHHHHHHHHcCcCEEEe--cCCCCcc-
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCP-YE-----G---AVPPHNVTRVATALYKMGCYEISL--GDTIGVG- 197 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~-~~-----~---r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~- 197 (327)
+.+|.++..++++++|+..|+.+.+-+.. .|.. +. + .++|++..++. .+.|+|.+.+ .-..|.-
T Consensus 103 ~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~peea~~f~---~~TgvD~LAvaiGt~HG~y~ 178 (283)
T PRK08185 103 PYEENVALTKEVVELAHKVGVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQAEDFV---SRTGVDTLAVAIGTAHGIYP 178 (283)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEEee-ccCcccccccccccccCCCHHHHHHHH---HhhCCCEEEeccCcccCCcC
Confidence 34566888999999999999999887765 3322 11 1 23555554433 3448886655 2333332
Q ss_pred ---CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 198 ---TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 198 ---~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.|.---++++.+++..+ +||.+|.--..+ -.....|+..|+.-|..
T Consensus 179 ~~~kp~L~~e~l~~I~~~~~-iPLVlHGgsg~~--~e~~~~ai~~GI~KiNi 227 (283)
T PRK08185 179 KDKKPELQMDLLKEINERVD-IPLVLHGGSANP--DAEIAESVQLGVGKINI 227 (283)
T ss_pred CCCCCCcCHHHHHHHHHhhC-CCEEEECCCCCC--HHHHHHHHHCCCeEEEe
Confidence 23323556777777664 689888766544 66778899999887653
No 131
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=96.52 E-value=0.081 Score=49.86 Aligned_cols=170 Identities=17% Similarity=0.156 Sum_probs=105.9
Q ss_pred HHHHHHHHHhhcCCCeeEEEecCccchH--HHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcc
Q psy12516 29 MRLMLEDVLTVIPADRLAVHCHDTYGQA--LANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQ 106 (327)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~H~h~~~g~~--~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~ 106 (327)
+..++..+.+... +|+.+|. |-|.. +..+..|+++|.+.+..++.
T Consensus 80 ~~~~v~~~A~~~~-VPValHL--DHg~~~~~~~i~~ai~~g~~~v~~a~~------------------------------ 126 (350)
T PRK09197 80 GAKHVHEVAEHYG-VPVILHT--DHCAKKLLPWIDGLLDAGEKHFAAGGK------------------------------ 126 (350)
T ss_pred HHHHHHHHHHHCC-CCEEEEC--CCCCCcchHHHHHHHHhhHHHHHhcCC------------------------------
Confidence 4455555555553 7777665 44433 56777777777665554432
Q ss_pred cCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC----------CCChHHHHHH
Q psy12516 107 CGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG----------AVPPHNVTRV 176 (327)
Q Consensus 107 ~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~----------r~~~e~l~~~ 176 (327)
.|++.+. ++ .| ..+.+|+++..++++++|+..|+.|++-+...-|.++.. .++|++..++
T Consensus 127 ~gftSVM-iD-gS--------~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~F 196 (350)
T PRK09197 127 PLFSSHM-ID-LS--------EEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYA 196 (350)
T ss_pred CCceeEE-ee-CC--------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHH
Confidence 2222221 11 11 134466788999999999999999998888754444321 3677777766
Q ss_pred HHHHHHcCc----C--EEEecCCCCccC---HHHHHHHHHHHHHhc--------CCCeEEEeecCCcCcHHHHHHHHHHh
Q psy12516 177 ATALYKMGC----Y--EISLGDTIGVGT---PGTMRLMLEDVLTVI--------PADRLAVHCHDTYGQALANILTAMEF 239 (327)
Q Consensus 177 ~~~~~~~g~----~--~i~l~Dt~G~~~---P~~~~~~~~~~~~~~--------~~~~l~~H~Hn~~g~a~an~l~a~~~ 239 (327)
+++ .|+ | .+.+.-..|.-. |.==.++++.+++.+ +++||.+|.=. |..-.....|++.
T Consensus 197 v~~---Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgS--Gipde~i~~ai~~ 271 (350)
T PRK09197 197 YEA---LGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGS--GSTLEEIREAVSY 271 (350)
T ss_pred HHH---hCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCC--CCCHHHHHHHHHC
Confidence 654 355 6 466666777643 433344566666655 25788887654 7777888999999
Q ss_pred cCceeee
Q psy12516 240 GISVFDS 246 (327)
Q Consensus 240 G~~~vd~ 246 (327)
|+..|..
T Consensus 272 GI~KINi 278 (350)
T PRK09197 272 GVVKMNI 278 (350)
T ss_pred CCeeEEe
Confidence 9887653
No 132
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=96.44 E-value=0.57 Score=45.86 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCC-CccCHHHHHHHHHHHHHhcCCCe
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADR 217 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~-G~~~P~~~~~~~~~~~~~~~~~~ 217 (327)
.++++++++.|+.+..-+ .+++ .+ .+.++.+.+.|+|.|.+.-.. +...+....+.++.+++..+ +|
T Consensus 97 ~~~i~~a~~~G~~~~~g~---~s~~----t~----~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~-iP 164 (430)
T PRK07028 97 EDAVRAARKYGVRLMADL---INVP----DP----VKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVS-IP 164 (430)
T ss_pred HHHHHHHHHcCCEEEEEe---cCCC----CH----HHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhhCC-Cc
Confidence 456778888888765311 1111 11 233466677899988664211 11112233456777777655 68
Q ss_pred EEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 218 LAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 218 l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+.+|+ |....|...++++|++.|=.
T Consensus 165 I~a~G----GI~~~n~~~~l~aGAdgv~v 189 (430)
T PRK07028 165 IAVAG----GLDAETAAKAVAAGADIVIV 189 (430)
T ss_pred EEEEC----CCCHHHHHHHHHcCCCEEEE
Confidence 88887 89999999999999987543
No 133
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=96.39 E-value=0.79 Score=42.26 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCC------CCCCChHHHHHHHHHHHHcCcCEEEec--CCCCcc--CHH
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPY------EGAVPPHNVTRVATALYKMGCYEISLG--DTIGVG--TPG 200 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~------~~r~~~e~l~~~~~~~~~~g~~~i~l~--Dt~G~~--~P~ 200 (327)
.+|.++..++++++++..|+.|.+-+...-|.++ .+-+++|+..++.+ +.|+|.+.++ -..|.. .|.
T Consensus 110 ~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~---~tgvD~Lavs~Gt~hg~~~~~~~ 186 (282)
T TIGR01859 110 FEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVK---ETGVDYLAAAIGTSHGKYKGEPG 186 (282)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHH---HHCcCEEeeccCccccccCCCCc
Confidence 3455788889999999999988766654222222 12456666554443 3589987742 222221 122
Q ss_pred HHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 201 TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
-=.++++.+++..+ +||..|. .-|....|...++++|++.|..
T Consensus 187 l~~e~L~~i~~~~~-iPlv~hG--gSGi~~e~i~~~i~~Gi~kiNv 229 (282)
T TIGR01859 187 LDFERLKEIKELTN-IPLVLHG--ASGIPEEQIKKAIKLGIAKINI 229 (282)
T ss_pred cCHHHHHHHHHHhC-CCEEEEC--CCCCCHHHHHHHHHcCCCEEEE
Confidence 12334666776664 6776654 4477778999999999987654
No 134
>PRK05926 hypothetical protein; Provisional
Probab=96.37 E-value=0.4 Score=45.98 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE-----EE-----ecCCC--------Ccc
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE-----IS-----LGDTI--------GVG 197 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~-----i~-----l~Dt~--------G~~ 197 (327)
++..++++.+|+.|+++...+.+ | .-=++++..+....+.+++.+. +. -.+|- +..
T Consensus 207 ~e~l~~i~~a~~~Gi~~~sgmi~--G----~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~ 280 (370)
T PRK05926 207 QGFLEIHKTAHSLGIPSNATMLC--Y----HRETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSR 280 (370)
T ss_pred HHHHHHHHHHHHcCCcccCceEE--e----CCCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccccccccCCC
Confidence 34567899999999999876443 2 1236778888888888876652 22 12332 124
Q ss_pred CHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHH
Q psy12516 198 TPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYML 273 (327)
Q Consensus 198 ~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l 273 (327)
++.+..++++..|=.+++ +...+ +. ++...+..++.+||+-+++|+..=---+.|....+ ..+.+++....
T Consensus 281 ~~~~~lr~~AvaRl~l~n~~~iqa~w---~~--~G~~~~q~~L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i 355 (370)
T PRK05926 281 HSIPPASIIAVARLFLDNFPNIKALW---NY--LGIEVALHLLSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLI 355 (370)
T ss_pred ChHHHHHHHHHHHHhcCCCcccccCc---hh--cCHHHHHHHHhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHH
Confidence 455555555544433333 22222 22 34557788999999999999874321122222233 34678888888
Q ss_pred HhCCCC
Q psy12516 274 EGMGIE 279 (327)
Q Consensus 274 ~~~g~~ 279 (327)
+..|..
T Consensus 356 ~~~g~~ 361 (370)
T PRK05926 356 TQQGRI 361 (370)
T ss_pred HHcCCC
Confidence 877754
No 135
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.37 E-value=0.21 Score=46.08 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----C--CCChHHHHHHHHHHHHcCcCEE--EecCCCCcc--CHH
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----G--AVPPHNVTRVATALYKMGCYEI--SLGDTIGVG--TPG 200 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----~--r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~~--~P~ 200 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. . .++|++..++++ +.|+|.+ .+.-..|.- .|.
T Consensus 113 ~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~ 189 (286)
T PRK08610 113 FEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVE---KTGIDALAPALGSVHGPYKGEPK 189 (286)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHH---HHCCCEEEeeccccccccCCCCC
Confidence 45668889999999999999999888875444432 1 367777666654 5688854 444455543 242
Q ss_pred HHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 201 TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
==.++++.+++.+ ++||.+|. --|..-.....|+..|+..|.
T Consensus 190 Ld~~~L~~I~~~~-~vPLVLHG--gSG~~~e~~~~ai~~GI~KiN 231 (286)
T PRK08610 190 LGFKEMEEIGLST-GLPLVLHG--GTGIPTKDIQKAIPFGTAKIN 231 (286)
T ss_pred CCHHHHHHHHHHH-CCCEEEeC--CCCCCHHHHHHHHHCCCeEEE
Confidence 2244566667666 46887765 457777888899999987664
No 136
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=96.17 E-value=0.24 Score=46.78 Aligned_cols=143 Identities=15% Similarity=0.173 Sum_probs=83.4
Q ss_pred HHHHHHHHcCcCEEEecC-CccccCHHHHHHHH--------HHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGD-TIGVGTPGTMRLML--------EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~D-t~G~~~p~~~~~~~--------~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++...+.|+|.+.+.| +.+..+|...++.+ +.+++..+..++ +|.+.+.. +.+..+ +.|++.+
T Consensus 184 ~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~i-lh~cg~~~----~~~~~~~~~~~~~~ 258 (338)
T TIGR01464 184 EYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPV-ILFAKGAG----HLLEELAETGADVV 258 (338)
T ss_pred HHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEeCCcH----HHHHHHHhcCCCEE
Confidence 567778889999999999 56899999876544 344433233333 66555432 455555 5688776
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
... . ..++.+....+.+ ..+.-|++...+ ..+.+++.+..+++++.+...+-
T Consensus 259 s~d-----~---------~~dl~e~~~~~~~~~~i~Gni~p~~l-------------~gt~e~i~~~v~~~l~~~~~~~g 311 (338)
T TIGR01464 259 GLD-----W---------TVDLKEARKRVGPGVAIQGNLDPAVL-------------YAPEEALEEKVEKILEAFGGKSR 311 (338)
T ss_pred EeC-----C---------CCCHHHHHHHhCCCeeEEeCCChHHh-------------cCCHHHHHHHHHHHHHHhccCCC
Confidence 421 1 2345555555443 244444543211 12456667777777777643332
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
.+. +.||..-..+++|.+..+.+.+.
T Consensus 312 ~Il-----~~Gc~i~~~tp~eni~a~v~a~~ 337 (338)
T TIGR01464 312 YIF-----NLGHGILPDTPPENVKALVEYVH 337 (338)
T ss_pred cee-----cCCCcCCCCcCHHHHHHHHHHHh
Confidence 221 24565444678888887776653
No 137
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.16 E-value=0.24 Score=45.55 Aligned_cols=111 Identities=19% Similarity=0.333 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC------CCCChHHHHHHHHHHHHcCcCEEE--ecCCCCccC-HH
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE------GAVPPHNVTRVATALYKMGCYEIS--LGDTIGVGT-PG 200 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~------~r~~~e~l~~~~~~~~~~g~~~i~--l~Dt~G~~~-P~ 200 (327)
+.+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..+++ .+.|+|.+. +.-..|.-. |.
T Consensus 109 ~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv---~~TgvD~LAvaiGt~HG~Y~~p~ 185 (283)
T PRK07998 109 PFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFV---ERTGCDMLAVSIGNVHGLEDIPR 185 (283)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHH---HHhCcCeeehhccccccCCCCCC
Confidence 345568889999999999999998877775444432 135776665444 456888543 333444321 43
Q ss_pred HHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 201 TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
-=.++++.+++..+ +||.+|.=. |..-.....|++.|+..|..
T Consensus 186 l~~~~l~~I~~~~~-vPLVlHGgS--G~~~e~~~~ai~~Gi~KiNi 228 (283)
T PRK07998 186 IDIPLLKRIAEVSP-VPLVIHGGS--GIPPEILRSFVNYKVAKVNI 228 (283)
T ss_pred cCHHHHHHHHhhCC-CCEEEeCCC--CCCHHHHHHHHHcCCcEEEE
Confidence 22466777777764 688887654 66667778899999887653
No 138
>PRK15452 putative protease; Provisional
Probab=96.13 E-value=0.077 Score=52.02 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCC
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~ 215 (327)
+.+++.+++|++.|.++.+.+-.. + ..-..+.+.+..+.+.+.|+|.|.+.|. .++..+++..|+
T Consensus 46 edl~eav~~ah~~g~kvyvt~n~i---~--~e~el~~~~~~l~~l~~~gvDgvIV~d~----------G~l~~~ke~~p~ 110 (443)
T PRK15452 46 ENLALGINEAHALGKKFYVVVNIA---P--HNAKLKTFIRDLEPVIAMKPDALIMSDP----------GLIMMVREHFPE 110 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCc---C--CHHHHHHHHHHHHHHHhCCCCEEEEcCH----------HHHHHHHHhCCC
Confidence 346778999999999986654431 1 1234456777788888999999999883 245667776776
Q ss_pred CeEEE
Q psy12516 216 DRLAV 220 (327)
Q Consensus 216 ~~l~~ 220 (327)
.+++.
T Consensus 111 l~ih~ 115 (443)
T PRK15452 111 MPIHL 115 (443)
T ss_pred CeEEE
Confidence 65544
No 139
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.04 E-value=0.41 Score=44.23 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCEE--EecCCCCcc--C
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYEI--SLGDTIGVG--T 198 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~~--~ 198 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..+++ .+.|+|.+ .+.-..|.- .
T Consensus 113 ~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~ 189 (288)
T TIGR00167 113 FEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFV---KLTGVDSLAAAIGNVHGVYKGE 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH---hccCCcEEeeccCccccccCCC
Confidence 45668899999999999999999888875444432 135666554443 45688854 444455543 3
Q ss_pred HH-HHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 199 PG-TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 199 P~-~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
|. ==.++++.+++.++ +||.+|.=. |..-.....|++.|+..|.
T Consensus 190 p~~Ld~~~L~~I~~~v~-vPLVlHGgS--G~~~e~~~~ai~~Gi~KiN 234 (288)
T TIGR00167 190 PKGLDFERLEEIQKYVN-LPLVLHGGS--GIPDEEIKKAISLGVVKVN 234 (288)
T ss_pred CCccCHHHHHHHHHHhC-CCEEEeCCC--CCCHHHHHHHHHcCCeEEE
Confidence 44 12345777777664 688887654 6777788899999987664
No 140
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=96.03 E-value=0.67 Score=40.47 Aligned_cols=136 Identities=19% Similarity=0.189 Sum_probs=78.3
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|+.+++..+.-. +.+++.|.|.+.+........ .-..++..+.+..+++.++ |..+.+.+.. ...
T Consensus 64 g~~~~~~k~~ev-e~A~~~GAdevdvv~~~g~~~-----~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~-------~~l 128 (203)
T cd00959 64 GATTTEVKVAEA-REAIADGADEIDMVINIGALK-----SGDYEAVYEEIAAVVEACG--GAPLKVILET-------GLL 128 (203)
T ss_pred CCCcHHHHHHHH-HHHHHcCCCEEEEeecHHHHh-----CCCHHHHHHHHHHHHHhcC--CCeEEEEEec-------CCC
Confidence 344455444332 345667887766543332210 1122345667777777775 7666553332 234
Q ss_pred ChHHHHHHHHHHHHcCcCEEEec--CCCCccCHHHHHHHHHHHHHhcCCCeEEEee-cCCcCcHHHHHHHHHHhcCceee
Q psy12516 169 PPHNVTRVATALYKMGCYEISLG--DTIGVGTPGTMRLMLEDVLTVIPADRLAVHC-HDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~--Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~-Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
+++.+...++.+.++|+|.|-.. =+.+..+|+++..+-+.++.. +++-.=. -.+ ...++.-+++|++++=
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~---v~ik~aGGikt----~~~~l~~~~~g~~riG 201 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGR---VGVKAAGGIRT----LEDALAMIEAGATRIG 201 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCC---ceEEEeCCCCC----HHHHHHHHHhChhhcc
Confidence 68899999999999999987765 222346777777665555521 2332211 012 3566777788888764
Q ss_pred e
Q psy12516 246 S 246 (327)
Q Consensus 246 ~ 246 (327)
+
T Consensus 202 ~ 202 (203)
T cd00959 202 T 202 (203)
T ss_pred C
Confidence 4
No 141
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=95.88 E-value=0.37 Score=45.40 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=82.5
Q ss_pred HHHHHHHHcCcCEEEecC-CccccCHHHHHHHH--------HHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGD-TIGVGTPGTMRLML--------EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~D-t~G~~~p~~~~~~~--------~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++...++|+|.|.+.| +.+.++|...++.+ +.+++..|.. ..+|.+.+. . +.+..+ +.|++.+
T Consensus 181 ~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~-~ilh~cg~~--~--~~~~~~~~~~~~~~ 255 (335)
T cd00717 181 EYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGV-PVILFAKGA--G--GLLEDLAQLGADVV 255 (335)
T ss_pred HHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEcCCC--H--HHHHHHHhcCCCEE
Confidence 567778889999999999 55899999876554 2333332222 346665532 2 556666 5687775
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
.. +. +.++++....+.+ ..+.-+++... +..+.+++.+..+++++.+...+-
T Consensus 256 s~-----d~---------~~dl~e~k~~~g~~~~i~Gni~p~~-------------l~~~~e~i~~~v~~~l~~~~~~~g 308 (335)
T cd00717 256 GL-----DW---------RVDLDEARKRLGPKVALQGNLDPAL-------------LYAPKEAIEKEVKRILKAFGGAPG 308 (335)
T ss_pred Ee-----CC---------CCCHHHHHHHhCCCeEEEeCCChhh-------------hcCCHHHHHHHHHHHHHHhCcCCC
Confidence 32 11 2355555544442 23333344311 112345667777788877655332
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
.+. +.||.....+++|.+..+.+.+.
T Consensus 309 fIl-----~~gc~i~~~tp~eNi~a~v~a~~ 334 (335)
T cd00717 309 HIF-----NLGHGILPDTPPENVKALVEAVH 334 (335)
T ss_pred cee-----ecCCcCCCCcCHHHHHHHHHHHh
Confidence 221 24565445688888888777654
No 142
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=95.81 E-value=0.86 Score=43.71 Aligned_cols=133 Identities=16% Similarity=0.163 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC------EEE---ecCCCC------ccC
Q psy12516 135 LERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY------EIS---LGDTIG------VGT 198 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~------~i~---l~Dt~G------~~~ 198 (327)
++...+.++.+++.|++ +..-+. +|-.. +.++..+++..+.+++++ .|. +-...| .++
T Consensus 201 ~~~rl~~i~~a~~aG~~~v~~g~i--~Glge----~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~~~ 274 (371)
T PRK09240 201 FEYRLETPERAGRAGIRKIGLGAL--LGLSD----WRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTGGIEPASIVS 274 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeceEEE--ecCCc----cHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCCCCCCCCCCC
Confidence 44456678888889986 643333 33221 345555666555544432 332 333333 267
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee----ccccCCCCCCCCCC-------CCCccHH
Q psy12516 199 PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS----SIAGLGGCPYARGA-------SGNVATE 267 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~----s~~G~G~~p~~~g~-------~Gn~~~e 267 (327)
|.++.+++..+|-.+|+..|.+-+-....+. . ..+..|+..+.+ .++|+.. ... +..-+++
T Consensus 275 ~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lr--d--~~~~~~~~~~~ag~~~~~G~y~~----~~~~~~qf~~~~~r~~~ 346 (371)
T PRK09240 275 DKQLVQLICAFRLFLPDVEISLSTRESPEFR--D--NLIPLGITKMSAGSSTQPGGYAD----DHKELEQFEISDDRSVE 346 (371)
T ss_pred HHHHHHHHHHHHHHCcccccEEecCCCHHHH--H--HHHhhcceeeccCccCCCCCcCC----CCCCcCCccCCCCCCHH
Confidence 8899999999998889876666444322111 0 112233433332 2222222 000 0246889
Q ss_pred HHHHHHHhCCCCCC
Q psy12516 268 DLVYMLEGMGIETG 281 (327)
Q Consensus 268 ~~~~~l~~~g~~~~ 281 (327)
+.+.+|++.|+++.
T Consensus 347 ~~~~~i~~~g~~~~ 360 (371)
T PRK09240 347 EVAAALRAKGLQPV 360 (371)
T ss_pred HHHHHHHHCCCeec
Confidence 99999999998863
No 143
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=95.79 E-value=0.85 Score=39.99 Aligned_cols=70 Identities=16% Similarity=0.062 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHH---HHHHHHHHhcCce
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQAL---ANILTAMEFGISV 243 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~---an~l~a~~~G~~~ 243 (327)
+.++|....++.....+|.+.|+|.|..|...|.. .++++.+++.. +.|+.+ |-++ ..+..++++|+|.
T Consensus 130 ~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~-~e~i~~Vk~~~-~~Pv~v------GGGIrs~e~a~~l~~~GAD~ 201 (205)
T TIGR01769 130 YNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVN-PETISLVKKAS-GIPLIV------GGGIRSPEIAYEIVLAGADA 201 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCC-HHHHHHHHHhh-CCCEEE------eCCCCCHHHHHHHHHcCCCE
Confidence 46889999999999999999999999988854432 56777777766 345555 4443 3334444678876
Q ss_pred e
Q psy12516 244 F 244 (327)
Q Consensus 244 v 244 (327)
|
T Consensus 202 V 202 (205)
T TIGR01769 202 I 202 (205)
T ss_pred E
Confidence 5
No 144
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.77 E-value=1.1 Score=39.35 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC-C
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-A 215 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~-~ 215 (327)
.++++++.++..|+.+.+.+ .+.++ .+++.+.|++.+.+-...+...+... +.+..+++.+| +
T Consensus 109 ~~~~~~~~~~~~g~~~~v~v-----------~~~~e----~~~~~~~g~~~i~~t~~~~~~~~~~~-~~~~~l~~~~~~~ 172 (217)
T cd00331 109 QLKELYELARELGMEVLVEV-----------HDEEE----LERALALGAKIIGINNRDLKTFEVDL-NTTERLAPLIPKD 172 (217)
T ss_pred HHHHHHHHHHHcCCeEEEEE-----------CCHHH----HHHHHHcCCCEEEEeCCCccccCcCH-HHHHHHHHhCCCC
Confidence 35556666677788763211 12233 45566778888877766666555554 55677776653 3
Q ss_pred CeEEEeecCCcCcHH-HHHHHHHHhcCcee
Q psy12516 216 DRLAVHCHDTYGQAL-ANILTAMEFGISVF 244 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~-an~l~a~~~G~~~v 244 (327)
.++..= .|... .+.....++|++.|
T Consensus 173 ~pvia~----gGI~s~edi~~~~~~Ga~gv 198 (217)
T cd00331 173 VILVSE----SGISTPEDVKRLAEAGADAV 198 (217)
T ss_pred CEEEEE----cCCCCHHHHHHHHHcCCCEE
Confidence 444431 13332 66777778887754
No 145
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.74 E-value=1.2 Score=38.64 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecC-----CCCccCHHHHHHHHHHHHHhc
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGD-----TIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~D-----t~G~~~P~~~~~~~~~~~~~~ 213 (327)
.++++++++.|+++...+.. +....+.++.+.+.|+|.+.+.- +.+...+ +.++.+++.+
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~-----------~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~----~~i~~l~~~~ 156 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLIN-----------VKDKVKRAKELKELGADYIGVHTGLDEQAKGQNPF----EDLQTILKLV 156 (206)
T ss_pred HHHHHHHHHcCCEEEEEecC-----------CCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCH----HHHHHHHHhc
Confidence 44577788889887643221 11233344455677999887641 2222233 3455556555
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+..++.+ +-|-...|.-..+++|++.+-.
T Consensus 157 ~~~~i~v----~GGI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 157 KEARVAV----AGGINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CCCcEEE----ECCcCHHHHHHHHHcCCCEEEE
Confidence 5444432 3466677888889999987654
No 146
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=95.70 E-value=0.56 Score=42.94 Aligned_cols=145 Identities=19% Similarity=0.190 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--CCCChHHH---HHHHHHHHHcCcC--EEEecCCCCccCHHH---
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--GAVPPHNV---TRVATALYKMGCY--EISLGDTIGVGTPGT--- 201 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--~r~~~e~l---~~~~~~~~~~g~~--~i~l~Dt~G~~~P~~--- 201 (327)
+|.+...++++++|+..|+.|++-|...-|-++. ...+++.+ .+..+.+..-|+| .+.|....|.-.|..
T Consensus 112 eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L 191 (286)
T COG0191 112 EENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKL 191 (286)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCC
Confidence 4457888999999999999999888875555552 12232222 2233334455677 456667777655311
Q ss_pred HHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 202 MRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
=-++++.+++..+ +||.+|.=. |........|++.|+..|...- -.-.+.+..+-.++.+.. ..
T Consensus 192 ~~~~L~~i~~~~~-~PlVlHGgS--Gip~~eI~~aI~~GV~KvNi~T-----------d~~~A~~~avr~~~~~~~--k~ 255 (286)
T COG0191 192 DFDRLKEIQEAVS-LPLVLHGGS--GIPDEEIREAIKLGVAKVNIDT-----------DLQLAFTAAVREYLAENP--KE 255 (286)
T ss_pred CHHHHHHHHHHhC-CCEEEeCCC--CCCHHHHHHHHHhCceEEeeCc-----------HHHHHHHHHHHHHHHhCc--cc
Confidence 1234666666656 677777655 8889999999999998764311 122455555555665532 35
Q ss_pred CChhhHHHHHH
Q psy12516 282 ADLTSLLRTGH 292 (327)
Q Consensus 282 ~d~~~l~~~~~ 292 (327)
+|..+++.-+.
T Consensus 256 ~DpR~~l~~a~ 266 (286)
T COG0191 256 YDPRKYLKPAI 266 (286)
T ss_pred CCHHHHHHHHH
Confidence 77766655443
No 147
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=95.63 E-value=0.98 Score=39.78 Aligned_cols=189 Identities=14% Similarity=0.172 Sum_probs=99.1
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHh
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 100 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l 100 (327)
...|+.++..+.+..++. +|-.-+.+-..+..+...++ .++. +-+.++ .|+ |..+++.-+.-.
T Consensus 13 p~~t~~~i~~lc~~A~~~------~~~avcv~p~~v~~a~~~l~~~~v~-v~tVig----FP~-----G~~~~~~K~~E~ 76 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTY------KFAAVCVNPSYVPLAKELLKGTEVR-ICTVVG----FPL-----GASTTDVKLYET 76 (211)
T ss_pred CCCCHHHHHHHHHHHHhh------CCcEEEeCHHHHHHHHHHcCCCCCe-EEEEeC----CCC-----CCCcHHHHHHHH
Confidence 345666666666655442 34444444444555555553 1222 222222 222 444444332222
Q ss_pred hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHH
Q psy12516 101 EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATAL 180 (327)
Q Consensus 101 ~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~ 180 (327)
+.+++.|.|.+.+........ .-..++..+.+..+++.++ |..+.+.+.. +..+.+.+...++..
T Consensus 77 -~~Av~~GAdEiDvv~n~g~l~-----~g~~~~v~~ei~~i~~~~~--g~~lKvIlE~-------~~L~~~ei~~a~~ia 141 (211)
T TIGR00126 77 -KEAIKYGADEVDMVINIGALK-----DGNEEVVYDDIRAVVEACA--GVLLKVIIET-------GLLTDEEIRKACEIC 141 (211)
T ss_pred -HHHHHcCCCEEEeecchHhhh-----CCcHHHHHHHHHHHHHHcC--CCeEEEEEec-------CCCCHHHHHHHHHHH
Confidence 346677777766554433211 1122344556666666664 6666554443 236668888999999
Q ss_pred HHcCcCEEEecC--CCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 181 YKMGCYEISLGD--TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 181 ~~~g~~~i~l~D--t~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.++|+|-|--.. ..+-.+|+++..+-+.+.. ++.+..---.- ....+++-+++|++++=+|
T Consensus 142 ~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~-----~v~IKaaGGir-t~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 142 IDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD-----TIGVKASGGVR-TAEDAIAMIEAGASRIGAS 204 (211)
T ss_pred HHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc-----CCeEEEeCCCC-CHHHHHHHHHHhhHHhCcc
Confidence 999999775431 1234677777666555443 22332221101 2356677778888877554
No 148
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=95.58 E-value=1.3 Score=43.58 Aligned_cols=153 Identities=8% Similarity=0.143 Sum_probs=90.7
Q ss_pred CcCEEEecCCcc-ccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGDTIG-VGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~Dt~G-~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
+++.|.|.+-+- .++|..+.++++.+++.++- .++.+-++- ..-....+..+ ++|+.+|..++..+..
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~eitie~np--~~l~~e~l~~lk~~G~~risiGvqS~~~----- 174 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDP--RYITKDVIDALRDEGFNRLSFGVQDFNK----- 174 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEecc--CcCCHHHHHHHHHcCCCEEEEcCCCCCH-----
Confidence 678899987554 45799999999999988652 233333321 11122334444 4666666655554432
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPY 164 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~ 164 (327)
++...+.+ ..+ .+.+.+.++.+++.|+. +...++ +|-|.
T Consensus 175 ---------~~l~~l~r-------------------------~~~----~~~~~~ai~~l~~~G~~~v~~dli--~GlPg 214 (455)
T TIGR00538 175 ---------EVQQAVNR-------------------------IQP----EEMIFELMNHAREAGFTSINIDLI--YGLPK 214 (455)
T ss_pred ---------HHHHHhCC-------------------------CCC----HHHHHHHHHHHHhcCCCcEEEeEE--eeCCC
Confidence 11111110 011 34567778888899985 444443 45453
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecCC---------------CCccCHHHHHHHHHHHHHhc
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGDT---------------IGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt---------------~G~~~P~~~~~~~~~~~~~~ 213 (327)
-+.+.+.+..+.+.+.+++.|.+-.- ....++++..+++..+.+.+
T Consensus 215 ---qt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L 275 (455)
T TIGR00538 215 ---QTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFL 275 (455)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHH
Confidence 47888889999999999987655432 11235667666666665543
No 149
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=95.58 E-value=0.067 Score=47.71 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccC-CCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh-c-C
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGC-PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV-I-P 214 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~-~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~-~-~ 214 (327)
+++.++.||++|+.+. +|. .++.-+....+.++.+.+.++|.+.|.+.|-+-.+.+++-.++++.+++. + .
T Consensus 43 l~eki~la~~~~V~v~------~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v 116 (237)
T TIGR03849 43 VKEKIEMYKDYGIKVY------PGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMV 116 (237)
T ss_pred HHHHHHHHHHcCCeEe------CCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeE
Confidence 7778999999999985 332 12222344677788889999999999999999999999999999999965 2 1
Q ss_pred CCeEEEeecC-----CcCcHHHHHHHHHHhcCcee--eecc----ccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 215 ADRLAVHCHD-----TYGQALANILTAMEFGISVF--DSSI----AGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 215 ~~~l~~H~Hn-----~~g~a~an~l~a~~~G~~~v--d~s~----~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
-.+++..... +...-+-..-..++|||++| ++-= -|+-+ ..|+.-...+-..+++.+
T Consensus 117 ~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~------~~g~~r~d~v~~i~~~l~ 184 (237)
T TIGR03849 117 LSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFD------EKGNVKEDELDVLAENVD 184 (237)
T ss_pred eccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeC------CCCCCchHHHHHHHhhCC
Confidence 2245554432 11223445566799999985 5522 24444 567777665555555433
No 150
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.34 Score=46.02 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCC
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~ 215 (327)
+.+.+.+++|++.|.++.+.+.... ..-..+.+.+..+.+.+.|+|.|.++|- -++..+++..|+
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~N~~~-----~~~~~~~~~~~l~~l~e~GvDaviv~Dp----------g~i~l~~e~~p~ 113 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAVNTLL-----HNDELETLERYLDRLVELGVDAVIVADP----------GLIMLARERGPD 113 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEecccc-----ccchhhHHHHHHHHHHHcCCCEEEEcCH----------HHHHHHHHhCCC
Confidence 3478889999999999876655422 2234456789999999999999999993 367788888898
Q ss_pred CeEEEeecC
Q psy12516 216 DRLAVHCHD 224 (327)
Q Consensus 216 ~~l~~H~Hn 224 (327)
.|+++=++-
T Consensus 114 l~ih~S~q~ 122 (347)
T COG0826 114 LPIHVSTQA 122 (347)
T ss_pred CcEEEeeeE
Confidence 887775543
No 151
>PRK15108 biotin synthase; Provisional
Probab=95.53 E-value=2.3 Score=40.39 Aligned_cols=130 Identities=8% Similarity=0.075 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc--CcCEEEe------cCC-CC---ccCHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM--GCYEISL------GDT-IG---VGTPGTM 202 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~--g~~~i~l------~Dt-~G---~~~P~~~ 202 (327)
++...+.++.+++.|+++...+. +|- --+.++..+....+.+. .++.|.+ +.| .+ .++|.+.
T Consensus 170 ~~~rl~~i~~a~~~G~~v~sg~i--~Gl----gEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~ 243 (345)
T PRK15108 170 YQERLDTLEKVRDAGIKVCSGGI--VGL----GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDF 243 (345)
T ss_pred HHHHHHHHHHHHHcCCceeeEEE--EeC----CCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHH
Confidence 55667788899999998764433 331 13667888888888888 4454432 344 12 3578899
Q ss_pred HHHHHHHHHhcCCCeEEEeecC-CcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 203 RLMLEDVLTVIPADRLAVHCHD-TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~H~Hn-~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
.+.+...|-.+|+..+.+-.-- ..+ --....++.+||+-+ +. |+ -+- ...| .+.++.+.++++.|+.+
T Consensus 244 lr~iAi~Rl~lp~~~i~i~~g~~~~~--~~~~~~~l~~Gan~~---~~--g~-~~l-tt~g-~~~~~~~~~i~~~g~~~ 312 (345)
T PRK15108 244 IRTIAVARIMMPTSYVRLSAGREQMN--EQTQAMCFMAGANSI---FY--GC-KLL-TTPN-PEEDKDLQLFRKLGLNP 312 (345)
T ss_pred HHHHHHHHHHCCCceeeecccHhHhC--hhhHHHHHHcCCcEE---EE--CC-ccc-cCCC-CCHHHHHHHHHHcCCCc
Confidence 9999988877887433321111 111 124688999999987 22 22 100 1234 68899999999998875
No 152
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=95.51 E-value=0.64 Score=46.42 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV 212 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~ 212 (327)
.++..+.++.+++.|+.+.+.++ +|.|.+ +.+.+.+..+.+.+.+++.+.+ ..++|.-=..++..+++.
T Consensus 322 ~~~~~~ai~~l~~~Gi~~~~~~I--~G~P~e---t~e~~~~t~~~~~~l~~~~~~~----~~~tP~PGT~l~~~~~~~ 390 (497)
T TIGR02026 322 TSTNKEAIRLLRQHNILSEAQFI--TGFENE---TDETFEETYRQLLDWDPDQANW----LMYTPWPFTSLFGELSDR 390 (497)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEE--EECCCC---CHHHHHHHHHHHHHcCCCceEE----EEecCCCCcHHHHHHHhh
Confidence 34567788999999998765544 565653 6788888889999999887765 357776555666666553
No 153
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=95.50 E-value=1.5 Score=43.13 Aligned_cols=132 Identities=11% Similarity=0.119 Sum_probs=82.3
Q ss_pred CcCEEEecCCcc-ccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGDTIG-VGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~Dt~G-~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
++..|.|.+-+- .++|..+.++++.+++.++- .++.+-+ +...-....+..+ ++|+.++..++..+..
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~--~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~----- 175 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEI--DPRTVTAEMLQALAALGFNRASFGVQDFDP----- 175 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEe--ccccCCHHHHHHHHHcCCCEEEECCCCCCH-----
Confidence 567888887553 36799999999999988652 2333322 2222233445555 5677777766654432
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPY 164 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~ 164 (327)
++...+.+ ..+ .+.+.+.++.+++.|+. +.+.++ +|-|.
T Consensus 176 ---------~vl~~l~R-------------------------~~~----~~~~~~ai~~lr~~G~~~v~~dli--~GlPg 215 (453)
T PRK13347 176 ---------QVQKAINR-------------------------IQP----EEMVARAVELLRAAGFESINFDLI--YGLPH 215 (453)
T ss_pred ---------HHHHHhCC-------------------------CCC----HHHHHHHHHHHHhcCCCcEEEeEE--EeCCC
Confidence 22211111 011 44567778888999986 555444 45553
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecC
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGD 192 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~D 192 (327)
-+.+.+.+..+.+.+.+++.|.+-.
T Consensus 216 ---qt~e~~~~tl~~~~~l~p~~i~~y~ 240 (453)
T PRK13347 216 ---QTVESFRETLDKVIALSPDRIAVFG 240 (453)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEec
Confidence 4788889999999999999877643
No 154
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.43 E-value=0.2 Score=42.36 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=51.8
Q ss_pred HHHHHHHHcCcCEEEecCCc----cccCHHHHHHHHHHHHhhcCC-CeeEEE---ecCccchHHHHHHHHHHcCCcEEEe
Q psy12516 2 KVASALYKMGCYEISLGDTI----GVGTPGTMRLMLEDVLTVIPA-DRLAVH---CHDTYGQALANILTAMEFGISVFDS 73 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~----G~~~p~~~~~~~~~~~~~~~~-~~~~~H---~h~~~g~~~~~~~~a~~aG~~~id~ 73 (327)
+-+..+++-|+|+|-.+... |...||.+|++- +..|. .++..- .-.-.|++.-.++-|.-+|+++|.+
T Consensus 11 eEA~eAieGGAdIiDVKNP~EGSLGANFPWvIr~i~----Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~GaDYiKV 86 (235)
T COG1891 11 EEAIEAIEGGADIIDVKNPAEGSLGANFPWVIREIR----EVVPEDQEVSATVGDVPYKPGTASLAALGAAVAGADYIKV 86 (235)
T ss_pred HHHHHHhhCCCceEeccCcccCcccCCChHHHHHHH----HhCccceeeeeeecCCCCCCchHHHHHHHhHhhCCceEEE
Confidence 34566778899999999876 788899877644 44443 334443 3345677666667777899999999
Q ss_pred cccCCC
Q psy12516 74 SIAGLG 79 (327)
Q Consensus 74 ~~~glg 79 (327)
++-|.-
T Consensus 87 GLYg~k 92 (235)
T COG1891 87 GLYGTK 92 (235)
T ss_pred eecccc
Confidence 887654
No 155
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=95.42 E-value=0.78 Score=43.23 Aligned_cols=146 Identities=15% Similarity=0.195 Sum_probs=83.6
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHH----HHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEe
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLE----DVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDS 73 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~----~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~ 73 (327)
++++...++|+|.|.+.|+.+ ..+|...++++. .+.+.+......+|+.-+. ...+..+ +.|++.+..
T Consensus 184 ~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~cG~~----~~~l~~~~~~g~d~~~~ 259 (339)
T PRK06252 184 EYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHICGDL----TSILEEMADCGFDGISI 259 (339)
T ss_pred HHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEECCCc----hHHHHHHHhcCCCeecc
Confidence 567788899999999999874 789998776642 3333332114567776443 2344444 578877541
Q ss_pred cccCCCCCCCCCCccCCCcHHHHHHHhh-hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE
Q psy12516 74 SIAGLGGCPYARGASGNVATEDLVYMLE-GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV 152 (327)
Q Consensus 74 ~~~glg~~p~~~~~~gn~~~e~v~~~l~-~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v 152 (327)
.. ..++++....+. +..+.-|+|....+ ++.+.+++.+..+++++ .|..+
T Consensus 260 -----d~---------~~dl~~~~~~~g~~~~i~Gnidp~~~l-----------~~gt~eeI~~~v~~~l~----~g~~I 310 (339)
T PRK06252 260 -----DE---------KVDVKTAKENVGDRAALIGNVSTSFTL-----------LNGTPEKVKAEAKKCLE----DGVDI 310 (339)
T ss_pred -----CC---------CCCHHHHHHHhCCCeEEEeccCcHHHh-----------cCCCHHHHHHHHHHHHH----cCCCE
Confidence 11 235555554442 23344445442221 12344555555555554 34332
Q ss_pred EEEEeeeccCCCCCCCChHHHHHHHHHHHHcCc
Q psy12516 153 RGYISCVVGCPYEGAVPPHNVTRVATALYKMGC 185 (327)
Q Consensus 153 ~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~ 185 (327)
. ..||-....+++|.+..+.+.+.++|.
T Consensus 311 l-----~~gcgi~~~tp~enl~a~v~a~~~~~~ 338 (339)
T PRK06252 311 L-----APGCGIAPKTPLENIKAMVEARKEYYA 338 (339)
T ss_pred E-----cCCCCCCCCCCHHHHHHHHHHHHHhcc
Confidence 1 235554446788999988888887664
No 156
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=95.42 E-value=2 Score=42.46 Aligned_cols=164 Identities=12% Similarity=0.172 Sum_probs=92.9
Q ss_pred cccCcchhhhhhhhhH--HHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 105 MQCGVKEIAVFASASE--MFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 105 ~~~Gid~i~l~~~~sd--~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
.+.|++.+.++.-+.+ .+.+.--.. +...++.-.+.++.|++.|++ |..- ..+|-++ .+ ++...++..+.
T Consensus 187 keaGv~~~~l~qETY~~ety~~~hp~g-~k~~y~~Rl~t~~rA~~aGi~~Vg~G--~L~GLge-~~---~E~~~l~~hl~ 259 (469)
T PRK09613 187 KEAGIGTYQLFQETYHKPTYEKMHPSG-PKSDYDWRLTAMDRAMEAGIDDVGIG--VLFGLYD-YK---FEVLGLLMHAE 259 (469)
T ss_pred HHcCCCEEEeccccCCHHHHHhcCCCC-CCCCHHHHHHHHHHHHHcCCCeeCeE--EEEcCCC-CH---HHHHHHHHHHH
Confidence 5677777666544422 222211111 111244456678899999997 6533 2344332 22 22233333332
Q ss_pred H------cCcCEEEec------CC-C----CccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCcee
Q psy12516 182 K------MGCYEISLG------DT-I----GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVF 244 (327)
Q Consensus 182 ~------~g~~~i~l~------Dt-~----G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v 244 (327)
. .|++.|.++ +| . -.+++.++.+++..+|-.+|...|.+-++....+- -..+..|+.++
T Consensus 260 ~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~~~~r----~~~~~~gvt~~ 335 (469)
T PRK09613 260 HLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRESAELR----REVLELGVSQI 335 (469)
T ss_pred HHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCCHHHH----HHHHhhcceee
Confidence 2 256655433 33 1 23677899999999998889888888777765432 34566788888
Q ss_pred e----eccccCCCC-------CCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 245 D----SSIAGLGGC-------PYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 245 d----~s~~G~G~~-------p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
+ ++++|..+- -|.- .=+-++++++..|.+.|+.+.
T Consensus 336 sags~t~~ggy~~~~~~~~~~QF~~--~d~r~~~ev~~~l~~~g~~p~ 381 (469)
T PRK09613 336 SAGSRTGVGGYSEEEEEEEKAQFEL--GDHRSLDEVIRELCEMGYIPS 381 (469)
T ss_pred cccccCCCCCcCCCCCCCCCCCccC--CCCCCHHHHHHHHHHCCCeEE
Confidence 5 344444430 0111 235688899998888887653
No 157
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.30 E-value=0.15 Score=50.58 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 171 HNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
+...+.++.+.+.|++.|.+ |+.- ..|..+.++++.+++.+|++++.. ..+.-...+..++++|++.|++++.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g 296 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVG 296 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCc
Confidence 46678889999999999887 6665 777999999999999999888777 4566677888899999999997555
No 158
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=95.30 E-value=0.87 Score=42.57 Aligned_cols=144 Identities=20% Similarity=0.307 Sum_probs=85.4
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHH--------HHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCc
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLML--------EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGIS 69 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~--------~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~ 69 (327)
++++.+.+.|++.|.+.|..+ .++|...++++ +.+++. +.++.+|...+.+ +.+..+ +.|++
T Consensus 172 ~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~--g~~~~lH~cG~~~----~~~~~l~~~~~d 245 (330)
T cd03465 172 RYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL--GGPVIHHNCGDTA----PILELMADLGAD 245 (330)
T ss_pred HHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHc--CCceEEEECCCch----hHHHHHHHhCCC
Confidence 567788889999999999763 34787765543 233322 3578888887664 445555 68887
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
.+..... .+++++...+.+ ..+.-|+|...++ .+-+.++..+.++++++.....
T Consensus 246 ~~~~d~~--------------~dl~~~~~~~g~~~~i~G~id~~~~l-----------~~gt~eei~~~v~~~l~~~~~~ 300 (330)
T cd03465 246 VFSIDVT--------------VDLAEAKKKVGDKACLMGNLDPIDVL-----------LNGSPEEIKEEVKELLEKLLKG 300 (330)
T ss_pred eEeeccc--------------CCHHHHHHHhCCceEEEeCcChHHhh-----------cCCCHHHHHHHHHHHHHHHhCC
Confidence 7663211 145555444432 3333445443111 2345667778888888887653
Q ss_pred -CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 149 -GIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 149 -Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
+-.+- ..+|......+++.+..+++.+.
T Consensus 301 ~~~~il-----~~gc~i~~~~p~enl~a~v~a~~ 329 (330)
T cd03465 301 GGGYIL-----SSGCEIPPDTPIENIKAMIDAVR 329 (330)
T ss_pred CCCEEE-----eCCCCCCCCCCHHHHHHHHHHHh
Confidence 32221 23444444577888887777654
No 159
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=95.28 E-value=1.2 Score=42.56 Aligned_cols=129 Identities=12% Similarity=0.165 Sum_probs=76.1
Q ss_pred cCEEEecCCc-cccCHHHHHHHHHHHHhhcC---CCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCC
Q psy12516 12 CYEISLGDTI-GVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARG 86 (327)
Q Consensus 12 ~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~---~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~ 86 (327)
++.|.+.+-+ -.+++.++.++++.+++.++ ..++.+-++- +.-....+..+ ++|+.+|..++..+..
T Consensus 52 v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie~np--~~lt~e~l~~l~~~Gv~risiGvqS~~~------ 123 (360)
T TIGR00539 52 LESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTEANP--ELITAEWCKGLKGAGINRLSLGVQSFRD------ 123 (360)
T ss_pred ccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCC--CCCCHHHHHHHHHcCCCEEEEecccCCh------
Confidence 6788888655 35678899999999987764 1344443322 21122334444 5677777766654432
Q ss_pred ccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCC
Q psy12516 87 ASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYE 165 (327)
Q Consensus 87 ~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~ 165 (327)
++...+ +-..+ .+.+.+.++.+++.|+. +.+.++ +|-|.
T Consensus 124 --------~~l~~l-------------------------gR~~~----~~~~~~ai~~l~~~G~~~v~~dli--~GlPg- 163 (360)
T TIGR00539 124 --------DKLLFL-------------------------GRQHS----AKNIAPAIETALKSGIENISLDLM--YGLPL- 163 (360)
T ss_pred --------HHHHHh-------------------------CCCCC----HHHHHHHHHHHHHcCCCeEEEecc--CCCCC-
Confidence 111111 00011 44566678888888885 444333 45453
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+..+.+.+.+++.|.+
T Consensus 164 --qt~~~~~~~l~~~~~l~~~~is~ 186 (360)
T TIGR00539 164 --QTLNSLKEELKLAKELPINHLSA 186 (360)
T ss_pred --CCHHHHHHHHHHHHccCCCEEEe
Confidence 46777888888888888886654
No 160
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=95.22 E-value=1.1 Score=42.57 Aligned_cols=130 Identities=9% Similarity=0.117 Sum_probs=77.1
Q ss_pred CcCEEEecC-CccccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCc
Q psy12516 11 GCYEISLGD-TIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGA 87 (327)
Q Consensus 11 g~~~i~~~D-t~G~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~ 87 (327)
+++.|+|.+ |--.++|..+.++++.+++.++ +.++.+-++-+. + ....++.+ ++|+.+|..++..+..
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~~-~-~~e~l~~l~~~GvnRiSiGvQS~~~------- 121 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPNS-A-TKAWLKGMKNLGVNRISFGVQSFNE------- 121 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCCC-C-CHHHHHHHHHcCCCEEEEecccCCH-------
Confidence 678999998 4467899999999999988753 244444443221 1 23344444 6788888777665542
Q ss_pred cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCC
Q psy12516 88 SGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEG 166 (327)
Q Consensus 88 ~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~ 166 (327)
++...+ +..+ + .+.+.+.++.+++.|+. +.+.+ ++|-|.
T Consensus 122 -------~~L~~l---gR~~----------------------~----~~~~~~ai~~lr~~g~~~v~iDl--i~GlPg-- 161 (350)
T PRK08446 122 -------DKLKFL---GRIH----------------------S----QKQIIKAIENAKKAGFENISIDL--IYDTPL-- 161 (350)
T ss_pred -------HHHHHc---CCCC----------------------C----HHHHHHHHHHHHHcCCCEEEEEe--ecCCCC--
Confidence 111111 0000 1 34456667777777775 44333 344443
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+..+.+.+.+++.|.+
T Consensus 162 -qt~~~~~~~l~~~~~l~~~~is~ 184 (350)
T PRK08446 162 -DNKKLLKEELKLAKELPINHLSA 184 (350)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEe
Confidence 35667777777777777776543
No 161
>PRK05660 HemN family oxidoreductase; Provisional
Probab=94.98 E-value=1.7 Score=41.84 Aligned_cols=130 Identities=12% Similarity=0.126 Sum_probs=83.9
Q ss_pred cCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCC
Q psy12516 10 MGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYA 84 (327)
Q Consensus 10 ~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~ 84 (327)
.+++.|.|..-+ -.+++..+.++++.+++.+|. .++.+-++ .+.-....+..+ ++|+++|..++..+..
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~n--p~~l~~e~l~~Lk~~Gv~risiGvqS~~~---- 130 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEAN--PGTVEADRFVGYQRAGVNRISIGVQSFSE---- 130 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeC--cCcCCHHHHHHHHHcCCCEEEeccCcCCH----
Confidence 467889998744 556789999999999998763 34444443 333334555555 6888888877765542
Q ss_pred CCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE-EEEEeeeccCC
Q psy12516 85 RGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV-RGYISCVVGCP 163 (327)
Q Consensus 85 ~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v-~~~l~~~~g~~ 163 (327)
++...+.+ . -+ .+.+.+.++.+++.|+.. .+.+ ++|-|
T Consensus 131 ----------~~L~~l~r---~----------------------~~----~~~~~~ai~~~~~~G~~~v~~dl--i~Glp 169 (378)
T PRK05660 131 ----------EKLKRLGR---I----------------------HG----PDEAKRAAKLAQGLGLRSFNLDL--MHGLP 169 (378)
T ss_pred ----------HHHHHhCC---C----------------------CC----HHHHHHHHHHHHHcCCCeEEEEe--ecCCC
Confidence 22211110 0 01 445677788889999863 4334 45555
Q ss_pred CCCCCChHHHHHHHHHHHHcCcCEEE
Q psy12516 164 YEGAVPPHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 164 ~~~r~~~e~l~~~~~~~~~~g~~~i~ 189 (327)
. -+.+.+.+..+.+.+.+++.|.
T Consensus 170 g---qt~~~~~~~l~~~~~l~p~~is 192 (378)
T PRK05660 170 D---QSLEEALDDLRQAIALNPPHLS 192 (378)
T ss_pred C---CCHHHHHHHHHHHHhcCCCeEE
Confidence 4 4788888999999999998765
No 162
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=94.97 E-value=1 Score=43.63 Aligned_cols=130 Identities=11% Similarity=0.097 Sum_probs=80.1
Q ss_pred CcCEEEecC-CccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGD-TIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~D-t~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
+++.|.|.+ |--.++|..+.++++.+++.++- .++.+-++ .+.-....+..+ ++|+.++..++..+..
T Consensus 66 ~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~--P~~lt~e~l~~l~~~GvnrislGvQS~~d----- 138 (400)
T PRK07379 66 PLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEID--PGTFDLEQLQGYRSLGVNRVSLGVQAFQD----- 138 (400)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeC--CCcCCHHHHHHHHHCCCCEEEEEcccCCH-----
Confidence 477999987 55667899999999999988752 24444332 211122344444 5677777765553331
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPY 164 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~ 164 (327)
+++..+.+ +-+ .+.+.+.++.+++.|+. +.+.++ +|-|.
T Consensus 139 ---------~~L~~l~R-------------------------~~~----~~~~~~ai~~l~~~G~~~v~~dlI--~GlPg 178 (400)
T PRK07379 139 ---------ELLALCGR-------------------------SHR----VKDIFAAVDLIHQAGIENFSLDLI--SGLPH 178 (400)
T ss_pred ---------HHHHHhCC-------------------------CCC----HHHHHHHHHHHHHcCCCeEEEEee--cCCCC
Confidence 22211111 111 34466678888888887 554444 56564
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+-.+.+.+++++.|.+
T Consensus 179 ---qt~e~~~~tl~~~~~l~p~~is~ 201 (400)
T PRK07379 179 ---QTLEDWQASLEAAIALNPTHLSC 201 (400)
T ss_pred ---CCHHHHHHHHHHHHcCCCCEEEE
Confidence 36778888888888888887654
No 163
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.95 E-value=1.4 Score=42.69 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=53.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 75 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~ 75 (327)
+.++.+.++|+|.|.+ |++. ..+..+.++++.+++.+|+.++-+.--.+. ..+..++++|++.|.+++
T Consensus 156 ~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~----e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 156 ERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIVTK----EAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecCCH----HHHHHHHHcCCCEEEECC
Confidence 5788999999999988 7764 235778888999999999877766666554 567888899999999533
No 164
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=94.87 E-value=0.82 Score=43.05 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=79.9
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHH--------HHHHHhhcCCC-eeEEEecCccchHHHHHHHHH-HcCCcE
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLM--------LEDVLTVIPAD-RLAVHCHDTYGQALANILTAM-EFGISV 70 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~--------~~~~~~~~~~~-~~~~H~h~~~g~~~~~~~~a~-~aG~~~ 70 (327)
++++.+.+.|+|.|.+.|.. +..+|...+++ ++.+++.. . ++.+|.+-+... ++.-+ +.|++.
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~g--~~~~~lH~cG~~~~----~~~~l~~~g~d~ 259 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEAG--KDPVILHICGNTTP----ILDDLADLGADV 259 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHHE--TE-EEEEETTHG-G----GHHHHHTSS-SE
T ss_pred HHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCceEEEECCchHH----HHHHHHhcCCCE
Confidence 56788889999999999966 67778875544 34444433 3 788898877643 33333 689888
Q ss_pred EEecccCCCCCCCCCCccCCCcHHHHHHHh-hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHH-HHHc
Q psy12516 71 FDSSIAGLGGCPYARGASGNVATEDLVYML-EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVST-ALTN 148 (327)
Q Consensus 71 id~~~~glg~~p~~~~~~gn~~~e~v~~~l-~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~-a~~~ 148 (327)
+.. +. ..++.+....+ .+..+.-|++...++. .+++++.+.++++++. ....
T Consensus 260 ~~~-----~~---------~~~~~~~~~~~~~~~~l~Gni~~~~~l~------------gt~eei~~~v~~~i~~~~~~~ 313 (343)
T PF01208_consen 260 LSV-----DE---------KVDLAEAKRKLGDKIVLMGNIDPVSLLF------------GTPEEIEEEVKRLIEEGLAGG 313 (343)
T ss_dssp EEE------T---------TS-HHHHHHHHTTSSEEEEEB-G-GGGG------------S-HHHHHHHHHHHHHHTHCTS
T ss_pred EEE-----cC---------CCCHHHHHHHhCCCeEEECCCCcccccc------------CCHHHHHHHHHHHHHHhcCCC
Confidence 774 11 23454444433 2344445566644443 2345556667777773 3333
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
|..+- ..||..-..+++|.+..+.+.+.++
T Consensus 314 ~gfIl-----~~gc~ip~~~p~eni~a~~~a~~eY 343 (343)
T PF01208_consen 314 GGFIL-----SPGCGIPPDTPPENIKAMVEAVKEY 343 (343)
T ss_dssp SSEEB-----EBSS---TTS-HHHHHHHHHHHHHH
T ss_pred CCEEE-----eCCCcCCCCcCHHHHHHHHHHHHhC
Confidence 33332 2445444568889999888887653
No 165
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=94.82 E-value=3.7 Score=39.30 Aligned_cols=77 Identities=9% Similarity=0.103 Sum_probs=45.8
Q ss_pred CccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee----ccccCCCCCCCCCCCC--------
Q psy12516 195 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS----SIAGLGGCPYARGASG-------- 262 (327)
Q Consensus 195 G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~----s~~G~G~~p~~~g~~G-------- 262 (327)
..++|.++.+++..+|-.+|...|-+-+-...-+. -..+..|+..+.+ .++|+-. ..|
T Consensus 270 ~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lr----d~~~~~~~~~~~a~~~~~~G~y~~------~~~~~~qf~~~ 339 (366)
T TIGR02351 270 VIVTDRELVQIICAYRLFDPFVEISLSTRESKKFR----DNVIPLGITKMSAGSSTEPGGYSS------EKKGLEQFEIS 339 (366)
T ss_pred CcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHH----HHHHhhcceeeccCcccCCCCcCC------CCCCcCcccCC
Confidence 45778999999999998889877766444321111 1112334333322 1222221 123
Q ss_pred -CccHHHHHHHHHhCCCCCC
Q psy12516 263 -NVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 263 -n~~~e~~~~~l~~~g~~~~ 281 (327)
+-++++++.++++.|+.+-
T Consensus 340 d~r~~~~~~~~i~~~g~~~~ 359 (366)
T TIGR02351 340 DERSVAEVEEDLRSKGLQPV 359 (366)
T ss_pred CCCCHHHHHHHHHHCCCeec
Confidence 3788999999999988764
No 166
>PLN02858 fructose-bisphosphate aldolase
Probab=94.81 E-value=1.1 Score=50.28 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCE--EEecCCCCccC-
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYE--ISLGDTIGVGT- 198 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~--i~l~Dt~G~~~- 198 (327)
+.+|+++..++++++||..|+.|++-+...-|.++. ..++|++..++++ +.|+|. +.+.-..|.-.
T Consensus 1204 ~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~ 1280 (1378)
T PLN02858 1204 SFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFID---ETGIDALAVCIGNVHGKYPA 1280 (1378)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHH---hcCCcEEeeecccccccCCC
Confidence 345668899999999999999999888775444432 0346665555444 568885 55555666542
Q ss_pred --HHHHHHHHHHHHHhcC--CCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 199 --PGTMRLMLEDVLTVIP--ADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 199 --P~~~~~~~~~~~~~~~--~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
|.==.++++.+++..+ ++||.+|.=. |..-.....|++.|+..|+
T Consensus 1281 ~~p~l~~~~l~~i~~~~~~~~vpLVlHGgS--G~~~~~~~~ai~~Gi~KiN 1329 (1378)
T PLN02858 1281 SGPNLRLDLLKELRALSSKKGVLLVLHGAS--GLPESLIKECIENGVRKFN 1329 (1378)
T ss_pred CCCccCHHHHHHHHHHhcCCCCcEEEeCCC--CCCHHHHHHHHHcCCeEEE
Confidence 4444457788888773 5788877654 5557888999999988764
No 167
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=94.68 E-value=3.9 Score=38.41 Aligned_cols=131 Identities=12% Similarity=0.015 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC-----cCEEEe------cCCC----CccCHHH
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG-----CYEISL------GDTI----GVGTPGT 201 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g-----~~~i~l------~Dt~----G~~~P~~ 201 (327)
...+.++.+++.|+.+...+.. | .- =++++..+....+.+.. ++.+.+ +.|- ...++.+
T Consensus 150 ~~l~~i~~a~~~Gi~~~s~~i~--G-~g---Et~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e 223 (322)
T TIGR03550 150 VRLETIEDAGRLKIPFTTGILI--G-IG---ETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEE 223 (322)
T ss_pred HHHHHHHHHHHcCCCccceeeE--e-CC---CCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHH
Confidence 4577899999999998766654 4 12 25566666666665543 432221 1332 2366788
Q ss_pred HHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCC-ccHHHHHHHHHhCCCC
Q psy12516 202 MRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGN-VATEDLVYMLEGMGIE 279 (327)
Q Consensus 202 ~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn-~~~e~~~~~l~~~g~~ 279 (327)
..++++..|=.+| ...|..-. .++ ......++.+||+-+++|+.=.|+ -.+ ..|. .+.+++..+++..|+.
T Consensus 224 ~lr~iAv~Rl~l~~~~~I~~~~--~l~--~~~~~~~L~~Gand~~gt~~~~~~-~~~--~~~~~~~~~~~~~~i~~~g~~ 296 (322)
T TIGR03550 224 MLRTVAVARLILPPDISIQVPP--NLN--REDYRLLLDAGIDDWGGVSPVTPD-HVN--PEAPWPEIDELARATEEAGFT 296 (322)
T ss_pred HHHHHHHHHHHcCCCCeeecCC--ccC--hHHHHHHHhcCCccccCcccCchh-hcC--CCCCCCCHHHHHHHHHHcCCC
Confidence 8888888777674 33333332 333 113678899999999988642233 001 1222 4789999999998876
Q ss_pred C
Q psy12516 280 T 280 (327)
Q Consensus 280 ~ 280 (327)
.
T Consensus 297 p 297 (322)
T TIGR03550 297 L 297 (322)
T ss_pred c
Confidence 5
No 168
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.55 E-value=1 Score=40.95 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=93.3
Q ss_pred HHHHHHHHcCcCEEEec----CCc---------------cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHH
Q psy12516 2 KVASALYKMGCYEISLG----DTI---------------GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 62 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~----Dt~---------------G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~ 62 (327)
++++.+.+.|+|.|.|. |.. +..|+..+-++++.+++..+.+|+.+=+=-+.
T Consensus 35 e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np--------- 105 (265)
T COG0159 35 EIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP--------- 105 (265)
T ss_pred HHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccH---------
Confidence 67788899999987764 433 45667777777777776555455444221111
Q ss_pred HHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH
Q psy12516 63 AMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV 142 (327)
Q Consensus 63 a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v 142 (327)
..+.-.|. +.+...+.|+|.+-+.+-- ++...+..
T Consensus 106 -------------------------i~~~Gie~----F~~~~~~~GvdGlivpDLP----------------~ee~~~~~ 140 (265)
T COG0159 106 -------------------------IFNYGIEK----FLRRAKEAGVDGLLVPDLP----------------PEESDELL 140 (265)
T ss_pred -------------------------HHHhhHHH----HHHHHHHcCCCEEEeCCCC----------------hHHHHHHH
Confidence 11112333 3345566777766544211 34455666
Q ss_pred HHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC-cCEEEecCCCCccCH--HHHHHHHHHHHHhcCCCeEE
Q psy12516 143 STALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG-CYEISLGDTIGVGTP--GTMRLMLEDVLTVIPADRLA 219 (327)
Q Consensus 143 ~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g-~~~i~l~Dt~G~~~P--~~~~~~~~~~~~~~~~~~l~ 219 (327)
+.+++.|+.... +.+| -++++.+.++.+... | .+-+...-++|.-.| ..+.++++.+|+.. ++|+.
T Consensus 141 ~~~~~~gi~~I~-----lvaP---tt~~~rl~~i~~~a~--GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~ 209 (265)
T COG0159 141 KAAEKHGIDPIF-----LVAP---TTPDERLKKIAEAAS--GFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVL 209 (265)
T ss_pred HHHHHcCCcEEE-----EeCC---CCCHHHHHHHHHhCC--CcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeE
Confidence 777788887531 2222 134444444443221 2 345555566776665 34788888888766 45766
Q ss_pred EeecCCcCcHHHHHHHHHHh
Q psy12516 220 VHCHDTYGQALANILTAMEF 239 (327)
Q Consensus 220 ~H~Hn~~g~a~an~l~a~~~ 239 (327)
+ |.++.+.-.+-+.
T Consensus 210 v------GFGIs~~e~~~~v 223 (265)
T COG0159 210 V------GFGISSPEQAAQV 223 (265)
T ss_pred E------ecCcCCHHHHHHH
Confidence 6 6665555444444
No 169
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=94.51 E-value=4.8 Score=39.64 Aligned_cols=133 Identities=11% Similarity=0.160 Sum_probs=81.1
Q ss_pred cCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCC
Q psy12516 10 MGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYA 84 (327)
Q Consensus 10 ~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~ 84 (327)
.+++.|.|.+-+ -.++|.++.++++.+++.++- .++.+-++-+ .-....+.++ ++|+.++..++..+..
T Consensus 101 ~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~--~lt~e~l~~l~~aG~~risiGvqS~~~---- 174 (453)
T PRK09249 101 RPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPR--ELDLEMLDALRELGFNRLSLGVQDFDP---- 174 (453)
T ss_pred CceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCC--cCCHHHHHHHHHcCCCEEEECCCCCCH----
Confidence 357788887644 446799999999999888652 2333333221 1123444555 5677777766654432
Q ss_pred CCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC-eEEEEEeeeccCC
Q psy12516 85 RGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI-RVRGYISCVVGCP 163 (327)
Q Consensus 85 ~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi-~v~~~l~~~~g~~ 163 (327)
++...+.+ ..+ .+.+.+.++.+++.|+ .+.+.++ +|-|
T Consensus 175 ----------~~L~~l~r-------------------------~~~----~~~~~~ai~~l~~~G~~~v~~dli--~GlP 213 (453)
T PRK09249 175 ----------EVQKAVNR-------------------------IQP----FEFTFALVEAARELGFTSINIDLI--YGLP 213 (453)
T ss_pred ----------HHHHHhCC-------------------------CCC----HHHHHHHHHHHHHcCCCcEEEEEE--ccCC
Confidence 12211111 001 3456677888888888 4554444 4545
Q ss_pred CCCCCChHHHHHHHHHHHHcCcCEEEecC
Q psy12516 164 YEGAVPPHNVTRVATALYKMGCYEISLGD 192 (327)
Q Consensus 164 ~~~r~~~e~l~~~~~~~~~~g~~~i~l~D 192 (327)
. -+.+.+.+..+.+.+.+++.|.+-.
T Consensus 214 g---qt~e~~~~~l~~~~~l~~~~i~~y~ 239 (453)
T PRK09249 214 K---QTPESFARTLEKVLELRPDRLAVFN 239 (453)
T ss_pred C---CCHHHHHHHHHHHHhcCCCEEEEcc
Confidence 3 4778888888999999998776654
No 170
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.46 E-value=1.1 Score=41.74 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=71.2
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEeec-CCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHCH-DTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~H-n~~g~a~an~l~a~~~G 240 (327)
++.|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++..++...+ +++-+|+- ++.--++..+..|.++|
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~G 103 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLG 103 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999 58899999999988887754 77888875 67788899999999999
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
++.+=..
T Consensus 104 ad~vlv~ 110 (309)
T cd00952 104 ADGTMLG 110 (309)
T ss_pred CCEEEEC
Confidence 9986554
No 171
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=94.46 E-value=1.5 Score=41.20 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=78.2
Q ss_pred HHHHHHHHcCcCEEEecCCccc---cCHHHHHHHHH----HHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEe
Q psy12516 2 KVASALYKMGCYEISLGDTIGV---GTPGTMRLMLE----DVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDS 73 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~---~~p~~~~~~~~----~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~ 73 (327)
++++...++|+|.|.+.|+.+. .+|...++++. .+.+.+...++.+|.+-+. .+.+..+ +.|++.+..
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~cG~~----~~~l~~~~~~g~d~~~~ 250 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHICGNT----TPILEYIAQCGFDGISV 250 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCC----hhHHHHHHHcCCCeecc
Confidence 5677788999999999998753 38998876652 2222232235677765443 3345555 568877531
Q ss_pred cccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE
Q psy12516 74 SIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV 152 (327)
Q Consensus 74 ~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v 152 (327)
.. ..++++....+.. ..+.-|+|...++ +..++++..+..+++++ .|..+
T Consensus 251 -----d~---------~~dl~e~~~~~g~~~~i~Gnidp~~~l-----------~~gt~e~i~~~~~~~l~----~g~~I 301 (326)
T cd03307 251 -----DE---------KVDVKTAKEIVGGRAALIGNVSPSQTL-----------LNGTPEDVKAEARKCLE----DGVDI 301 (326)
T ss_pred -----cc---------cCCHHHHHHHcCCceEEEeCCChHHHh-----------cCCCHHHHHHHHHHHHH----ccCCE
Confidence 11 2355555544432 3344445544211 12344444444444444 34332
Q ss_pred EEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 153 RGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 153 ~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
. ..||-....+++|.+..+.+.+.
T Consensus 302 l-----~~Gc~i~~~tp~env~a~v~a~~ 325 (326)
T cd03307 302 L-----APGCGIAPRTPLANLKAMVEARK 325 (326)
T ss_pred e-----cCcCCCCCCCCHHHHHHHHHHHh
Confidence 1 23554444678888887777654
No 172
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=94.45 E-value=1.8 Score=40.84 Aligned_cols=145 Identities=19% Similarity=0.213 Sum_probs=79.7
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHH----HHHhhcC--CCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLE----DVLTVIP--ADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~----~~~~~~~--~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++.+.+.|+|.|.+.|..+ ..+|...++++. .+.+.+. +....+|+.-+.. +.+..+ +.|++.+
T Consensus 184 ~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~~~----~~~~~l~~~g~d~l 259 (340)
T TIGR01463 184 AYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFTQ----PILRDIANNGCFGF 259 (340)
T ss_pred HHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCCch----hhHHHHHHhCCCEE
Confidence 467778899999999999764 778987766542 2222221 2456778876542 344444 5688765
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
.. .. ..++++....+.+ ..+.-|+|...++. +.+++++.+..+++++ .|.
T Consensus 260 s~-----d~---------~~~l~~~~~~~g~~~~i~Gnidp~~ll~-----------~gt~eeI~~~v~~~l~----~~~ 310 (340)
T TIGR01463 260 SV-----DM---------KPGMDHAKRVIGGQASLVGNLSPFSTLM-----------NGTPEKVKKLAKEVLY----NGG 310 (340)
T ss_pred ee-----cC---------CCCHHHHHHHcCCceEEEecCChHHHhc-----------CCCHHHHHHHHHHHHH----cCC
Confidence 41 11 1234444333332 22233454433221 2244554555555544 343
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
.+. ..||-....+++|.+..+.+.+.+++
T Consensus 311 ~Il-----~~gcgi~~~tp~eni~a~v~a~~~~~ 339 (340)
T TIGR01463 311 DIV-----MPGCDIDWMTPLENLKAMIEACKSIK 339 (340)
T ss_pred eEE-----CCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 321 23454444678888888888877654
No 173
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.36 E-value=1.5 Score=40.55 Aligned_cols=81 Identities=12% Similarity=0.035 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
++.|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+..+ .+||..|.-.+..-++..+..|.++|+
T Consensus 16 g~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Ga 95 (289)
T cd00951 16 GSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGA 95 (289)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCC
Confidence 589999999999999999999999999999 4778888888888887763 467777776566677788888999999
Q ss_pred ceeee
Q psy12516 242 SVFDS 246 (327)
Q Consensus 242 ~~vd~ 246 (327)
+.+=.
T Consensus 96 d~v~~ 100 (289)
T cd00951 96 DGILL 100 (289)
T ss_pred CEEEE
Confidence 98744
No 174
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.35 E-value=3 Score=36.37 Aligned_cols=114 Identities=22% Similarity=0.218 Sum_probs=70.0
Q ss_pred HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCCCeEEEee
Q psy12516 146 LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRLAVHC 222 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~~~l~~H~ 222 (327)
+..++.+...+.+ |... .+.+....-++.+.+.|+|.|.+.=-.|.. .-..+.+.+..+++...+.++-+ .
T Consensus 49 ~~~~~~v~~~~~f----p~g~-~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkv-I 122 (203)
T cd00959 49 KGSGVKVCTVIGF----PLGA-TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKV-I 122 (203)
T ss_pred CCCCcEEEEEEec----CCCC-CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEE-E
Confidence 3456666655444 3332 455556666788888999988887777743 23557777888887765555433 2
Q ss_pred cCCcCc----HHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 223 HDTYGQ----ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 223 Hn~~g~----a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
..+..+ =.-.+..|+++|+|+|-++ .|.+ .+++.+|++-.+.+
T Consensus 123 ~e~~~l~~~~i~~a~ria~e~GaD~IKTs-TG~~--------~~~at~~~v~~~~~ 169 (203)
T cd00959 123 LETGLLTDEEIIKACEIAIEAGADFIKTS-TGFG--------PGGATVEDVKLMKE 169 (203)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCEEEcC-CCCC--------CCCCCHHHHHHHHH
Confidence 222222 2334667899999999998 4443 24567776544333
No 175
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=94.35 E-value=3.5 Score=36.53 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=93.1
Q ss_pred HHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 3 VASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 3 ~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
-++++.+.|+| .+-+.| |..-|.-. .+.++++++..+..++..|..-..
T Consensus 17 ~i~~l~~~g~~~lH~DvmD--G~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~------------------------- 69 (220)
T PRK08883 17 DVEKVLAAGADVVHFDVMD--NHYVPNLTFGAPICKALRDYGITAPIDVHLMVKP------------------------- 69 (220)
T ss_pred HHHHHHHcCCCEEEEeccc--CcccCccccCHHHHHHHHHhCCCCCEEEEeccCC-------------------------
Confidence 45677788888 477777 77776632 345777776533466666664432
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEee
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISC 158 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~ 158 (327)
++..+..+ .++|.|.+.+-.-. -....+++++.|+.|+++...+.
T Consensus 70 --------------p~~~i~~~----~~~gad~i~~H~Ea----------------~~~~~~~l~~ik~~g~k~Glaln- 114 (220)
T PRK08883 70 --------------VDRIIPDF----AKAGASMITFHVEA----------------SEHVDRTLQLIKEHGCQAGVVLN- 114 (220)
T ss_pred --------------HHHHHHHH----HHhCCCEEEEcccC----------------cccHHHHHHHHHHcCCcEEEEeC-
Confidence 22222222 22344433321110 12245567788888988765333
Q ss_pred eccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhcCC----CeEEEeecCCcCcHH
Q psy12516 159 VVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVIPA----DRLAVHCHDTYGQAL 230 (327)
Q Consensus 159 ~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~~~----~~l~~H~Hn~~g~a~ 230 (327)
| .++.+.+..+.+.+ |.+.+ +.+.|...-....+.++.+++..+. .++++ |-|...
T Consensus 115 ----P---~Tp~~~i~~~l~~~-----D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v----dGGI~~ 178 (220)
T PRK08883 115 ----P---ATPLHHLEYIMDKV-----DLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI----DGGVKV 178 (220)
T ss_pred ----C---CCCHHHHHHHHHhC-----CeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE----ECCCCH
Confidence 2 25666666555432 33222 2334432222334456666665432 34544 889999
Q ss_pred HHHHHHHHhcCceeee
Q psy12516 231 ANILTAMEFGISVFDS 246 (327)
Q Consensus 231 an~l~a~~~G~~~vd~ 246 (327)
.|.-...++|++.+=+
T Consensus 179 eni~~l~~aGAd~vVv 194 (220)
T PRK08883 179 DNIREIAEAGADMFVA 194 (220)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999998743
No 176
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=94.28 E-value=1.5 Score=41.12 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecC---------CCCccCHHHHHH
Q psy12516 134 SLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGD---------TIGVGTPGTMRL 204 (327)
Q Consensus 134 ~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~D---------t~G~~~P~~~~~ 204 (327)
.++++.+.++.+++.|+.+.+.... + .+.+.+++.++++.+.+.|++.+.+.- ..-.+.+++..+
T Consensus 147 ~f~~~l~~I~~l~~~G~~v~v~~tv-~-----~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~ 220 (318)
T TIGR03470 147 VFDRAVEAIREAKARGFRVTTNTTL-F-----NDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKK 220 (318)
T ss_pred cHHHHHHHHHHHHHCCCcEEEEEEE-e-----CCCCHHHHHHHHHHHHHcCCCEEEEecCcccccccccccccCHHHHHH
Confidence 4677888899999999987654321 1 246889999999999999999887732 112456777788
Q ss_pred HHHHHHHh
Q psy12516 205 MLEDVLTV 212 (327)
Q Consensus 205 ~~~~~~~~ 212 (327)
++..+.+.
T Consensus 221 ~~~~~~~~ 228 (318)
T TIGR03470 221 LFREVLSN 228 (318)
T ss_pred HHHHHHhh
Confidence 88777653
No 177
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=94.25 E-value=2.7 Score=40.24 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=75.5
Q ss_pred cCEEEecC-CccccCHHHHHHHHHHHHhhcC---CCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCC
Q psy12516 12 CYEISLGD-TIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARG 86 (327)
Q Consensus 12 ~~~i~~~D-t~G~~~p~~~~~~~~~~~~~~~---~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~ 86 (327)
++.|.+.+ |--.++|.++.++++.+++.++ +.++.+-++-+ .-....+..+ ++|+.+|..++..+..
T Consensus 60 i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~--~i~~e~l~~l~~~G~~rvslGvQS~~~------ 131 (375)
T PRK05628 60 VSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPE--STSPEFFAALRAAGFTRVSLGMQSAAP------ 131 (375)
T ss_pred eeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCC--CCCHHHHHHHHHcCCCEEEEecccCCH------
Confidence 67899974 4456789999999999988764 22333333221 1122333444 4666666655553332
Q ss_pred ccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCC
Q psy12516 87 ASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYE 165 (327)
Q Consensus 87 ~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~ 165 (327)
++...+. -+.+ .+.+.+.++.+++.|+. +...++ +|-|.
T Consensus 132 --------~~L~~l~-------------------------R~~s----~~~~~~a~~~l~~~g~~~v~~dli--~GlPg- 171 (375)
T PRK05628 132 --------HVLAVLD-------------------------RTHT----PGRAVAAAREARAAGFEHVNLDLI--YGTPG- 171 (375)
T ss_pred --------HHHHHcC-------------------------CCCC----HHHHHHHHHHHHHcCCCcEEEEEe--ccCCC-
Confidence 1111110 0111 34456677788888887 655444 45454
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+..+.+.+.+++.|.+
T Consensus 172 --qt~~~~~~tl~~~~~l~~~~i~~ 194 (375)
T PRK05628 172 --ESDDDWRASLDAALEAGVDHVSA 194 (375)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEe
Confidence 36678888888888888886644
No 178
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=94.24 E-value=2.2 Score=38.92 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=69.9
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
+...++|+|.+-+.+-- ++...++.+.+++.|+.....+ +| -++.+.+..+++...
T Consensus 113 ~~~~~aGvdgviipDLP----------------~ee~~~~~~~~~~~gi~~I~lv-----~P---tT~~eri~~i~~~a~ 168 (263)
T CHL00200 113 KKISQAGVKGLIIPDLP----------------YEESDYLISVCNLYNIELILLI-----AP---TSSKSRIQKIARAAP 168 (263)
T ss_pred HHHHHcCCeEEEecCCC----------------HHHHHHHHHHHHHcCCCEEEEE-----CC---CCCHHHHHHHHHhCC
Confidence 34567788877654321 4567788999999999864321 22 145556555554332
Q ss_pred HcC-cCEEEecCCCCc--cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCceee
Q psy12516 182 KMG-CYEISLGDTIGV--GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVFD 245 (327)
Q Consensus 182 ~~g-~~~i~l~Dt~G~--~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~vd 245 (327)
| ++.+...-++|. ..|.++.++++.+|+... .|+.+ .+|-. -.++.....+|+|.|=
T Consensus 169 --gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~-~Pi~v----GFGI~~~e~~~~~~~~GADGvV 229 (263)
T CHL00200 169 --GCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTN-KPIIL----GFGISTSEQIKQIKGWNINGIV 229 (263)
T ss_pred --CcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcC-CCEEE----ECCcCCHHHHHHHHhcCCCEEE
Confidence 1 233444666676 567889999999998653 46666 33555 3355555677888643
No 179
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=94.19 E-value=3.8 Score=36.34 Aligned_cols=187 Identities=16% Similarity=0.166 Sum_probs=94.2
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCCcEEEeccc-CCCCCCCCCCccCCCcHHHHHHH
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIA-GLGGCPYARGASGNVATEDLVYM 99 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~~~id~~~~-glg~~p~~~~~~gn~~~e~v~~~ 99 (327)
...|+.+++.+.+..++ .+|-.-+.+-..+.-+...++ .++. +-+.++ .+| ...++.-+.-
T Consensus 17 p~~t~~~i~~~~~~A~~------~~~~avcv~p~~v~~a~~~l~~~~v~-v~tVigFP~G----------~~~~~~K~~e 79 (221)
T PRK00507 17 PEATEEDIDKLCDEAKE------YGFASVCVNPSYVKLAAELLKGSDVK-VCTVIGFPLG----------ANTTAVKAFE 79 (221)
T ss_pred CCCCHHHHHHHHHHHHH------hCCeEEEECHHHHHHHHHHhCCCCCe-EEEEecccCC----------CChHHHHHHH
Confidence 34567777777665554 234444444444444444442 2222 222222 222 2233322111
Q ss_pred hhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHH
Q psy12516 100 LEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATA 179 (327)
Q Consensus 100 l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~ 179 (327)
.+.+++.|.+.+.+....+.... -..++..+.+..+.+.+ .+..+.+.+.. ...+.+.+.++++.
T Consensus 80 -~~~Ai~~GA~EiD~Vin~~~~~~-----g~~~~v~~ei~~v~~~~--~~~~lKvIlEt-------~~L~~e~i~~a~~~ 144 (221)
T PRK00507 80 -AKDAIANGADEIDMVINIGALKS-----GDWDAVEADIRAVVEAA--GGAVLKVIIET-------CLLTDEEKVKACEI 144 (221)
T ss_pred -HHHHHHcCCceEeeeccHHHhcC-----CCHHHHHHHHHHHHHhc--CCceEEEEeec-------CcCCHHHHHHHHHH
Confidence 12455666666655444333211 01233344444444433 35555544443 24678889999999
Q ss_pred HHHcCcCEEEecCCC--CccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc-HHHHHHHHHHhcCceeeec
Q psy12516 180 LYKMGCYEISLGDTI--GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ-ALANILTAMEFGISVFDSS 247 (327)
Q Consensus 180 ~~~~g~~~i~l~Dt~--G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~-a~an~l~a~~~G~~~vd~s 247 (327)
+.+.|+|-|.-.-+. |-.+|+.++.+.+.+. . .+.+..-- |- ....++.-+++|+++|=+|
T Consensus 145 ~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~----~-~~~IKasG--GIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 145 AKEAGADFVKTSTGFSTGGATVEDVKLMRETVG----P-RVGVKASG--GIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred HHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----C-CceEEeeC--CcCCHHHHHHHHHcCcceEccC
Confidence 999999954443332 2356776666554443 2 23332221 11 1456677889999987554
No 180
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.11 E-value=0.24 Score=49.12 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=56.7
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++.+.+.|+|.|.+ |++- ..|..+.++++++++.+|++++-. ..+.....+...+++|++.|+++++
T Consensus 228 ~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g 296 (475)
T TIGR01303 228 GKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVG 296 (475)
T ss_pred HHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCc
Confidence 5688899999999877 7775 556899999999999999887766 4455567778888999999997776
No 181
>PLN02591 tryptophan synthase
Probab=94.05 E-value=3.4 Score=37.37 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=67.0
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
+...+.|+|.+-+.+-- ++...++.+.+++.|+.....+ +| .++.+.+..+++..
T Consensus 100 ~~~~~aGv~GviipDLP----------------~ee~~~~~~~~~~~gl~~I~lv-----~P---tt~~~ri~~ia~~~- 154 (250)
T PLN02591 100 ATIKEAGVHGLVVPDLP----------------LEETEALRAEAAKNGIELVLLT-----TP---TTPTERMKAIAEAS- 154 (250)
T ss_pred HHHHHcCCCEEEeCCCC----------------HHHHHHHHHHHHHcCCeEEEEe-----CC---CCCHHHHHHHHHhC-
Confidence 45566777776554211 4667888999999999864322 12 13445555544431
Q ss_pred HcC-cCEEEecCCCCc--cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCcee
Q psy12516 182 KMG-CYEISLGDTIGV--GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVF 244 (327)
Q Consensus 182 ~~g-~~~i~l~Dt~G~--~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~v 244 (327)
-| ++.|...-++|. ..|.++.++++.+|+. .++|+-+ -+|.. -.++-.....|+|.+
T Consensus 155 -~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~v----GFGI~~~e~v~~~~~~GADGv 215 (250)
T PLN02591 155 -EGFVYLVSSTGVTGARASVSGRVESLLQELKEV-TDKPVAV----GFGISKPEHAKQIAGWGADGV 215 (250)
T ss_pred -CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc-CCCceEE----eCCCCCHHHHHHHHhcCCCEE
Confidence 12 233444556665 5588999999999985 4556555 11444 235566667778764
No 182
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=94.05 E-value=2.8 Score=39.08 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 135 LERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 135 i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
.++..++++.+++. |+.+...++.-|| =+.+++.+..+.+.+.|++.+.+.
T Consensus 190 ~e~~Le~l~~ak~~~pgi~~~TgiIVGlG------ETeee~~etl~~Lrelg~d~v~ig 242 (302)
T TIGR00510 190 YRWSLKLLERAKEYLPNLPTKSGIMVGLG------ETNEEIKQTLKDLRDHGVTMVTLG 242 (302)
T ss_pred HHHHHHHHHHHHHhCCCCeecceEEEECC------CCHHHHHHHHHHHHhcCCCEEEee
Confidence 44566778888887 6776655554443 256888999999999999988763
No 183
>PRK08005 epimerase; Validated
Probab=94.01 E-value=4 Score=35.91 Aligned_cols=92 Identities=16% Similarity=0.069 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhc
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
..+++++.|+.|+++...+. | .++.+.+..+... +|.|.+ +...|...-..+.+.++.+|+..
T Consensus 95 ~~~~l~~Ik~~G~k~GlAln-----P---~Tp~~~i~~~l~~-----vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~ 161 (210)
T PRK08005 95 PSEILADIRAIGAKAGLALN-----P---ATPLLPYRYLALQ-----LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF 161 (210)
T ss_pred HHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHHHHh-----cCEEEEEEecCCCccceecHHHHHHHHHHHHhc
Confidence 44567888888998765443 2 2566666665542 242222 33445544456666778888766
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+...|++ |-|....|.-...++||+.+=+
T Consensus 162 ~~~~I~V----DGGI~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 162 PAAECWA----DGGITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred ccCCEEE----ECCCCHHHHHHHHHCCCCEEEE
Confidence 5433443 7899999999999999997643
No 184
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=93.99 E-value=4.2 Score=38.04 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=43.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+.+++|.++|+|.+++.= .+ .+-.+-+..+++..+ +|+..-+|-++.+ ++.+.+.|++-+-..=+.+|
T Consensus 40 ~QI~~L~~aG~dIVRvtv----~~-~e~A~A~~~Ik~~~~-vPLVaDiHf~~rl----a~~~~~~g~~k~RINPGNig 107 (361)
T COG0821 40 AQIKALERAGCDIVRVTV----PD-MEAAEALKEIKQRLN-VPLVADIHFDYRL----ALEAAECGVDKVRINPGNIG 107 (361)
T ss_pred HHHHHHHHcCCCEEEEec----CC-HHHHHHHHHHHHhCC-CCEEEEeeccHHH----HHHhhhcCcceEEECCcccC
Confidence 457889999999777653 12 334455777888875 7776666666654 35666777766653333343
No 185
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=93.95 E-value=3.1 Score=39.11 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=79.6
Q ss_pred HHHHHHHHc-CcCEEEecCCccc-----cCHHHHHHHH--------HHHHhhcCCCeeEEEecCccchHHHHHHHHH-Hc
Q psy12516 2 KVASALYKM-GCYEISLGDTIGV-----GTPGTMRLML--------EDVLTVIPADRLAVHCHDTYGQALANILTAM-EF 66 (327)
Q Consensus 2 ~~~~~~~~~-g~~~i~~~Dt~G~-----~~p~~~~~~~--------~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~a 66 (327)
++++...+. |+|.|.+.|+.+. ++|...++++ +.+++.. ..++.+|...+. ..++..+ +.
T Consensus 159 ~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~-g~piilH~cG~~----~~~l~~~~e~ 233 (321)
T cd03309 159 KLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNT-SALIVHHSCGAA----ASLVPSMAEM 233 (321)
T ss_pred HHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhcc-CCceEEEeCCCc----HHHHHHHHHc
Confidence 456666666 9999999997655 6999877554 2333221 256778877654 2345555 67
Q ss_pred CCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy12516 67 GISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA 145 (327)
Q Consensus 67 G~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a 145 (327)
|++.+.+-... .+++++...+.. ..+.-++|...++.. .++++..+.++++++..
T Consensus 234 g~dvl~~d~~~-------------~dl~eak~~~g~k~~l~GNlDp~~L~~~-----------~t~E~i~~~v~~~l~~~ 289 (321)
T cd03309 234 GVDSWNVVMTA-------------NNTAELRRLLGDKVVLAGAIDDVALDTA-----------TWPEEDARGVAKAAAEC 289 (321)
T ss_pred CCCEEEecCCC-------------CCHHHHHHHhCCCeEEEcCCChHHhcCC-----------CCHHHHHHHHHHHHHHh
Confidence 98887732111 255565555543 345555665433321 22345566677777766
Q ss_pred HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHH
Q psy12516 146 LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVAT 178 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~ 178 (327)
...|-++. ..++..-....++.+..+..
T Consensus 290 g~~~~fIf-----~~~~~~~~~~~~~~~~~~~~ 317 (321)
T cd03309 290 APIHPFIS-----APTAGLPFSIFPEVLRRVSA 317 (321)
T ss_pred CCCCCEEe-----CccCCCCcccCHHHHHHHHH
Confidence 55344332 12233222455666555443
No 186
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.83 E-value=2.5 Score=42.17 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=50.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++.+.++|+|.|.+ |++---++. ..+.++++++.+|++++..= .......+..++++|++.|.++++
T Consensus 244 ~~~~~l~~ag~d~i~i-d~a~G~s~~-~~~~i~~ik~~~~~~~v~aG----~V~t~~~a~~~~~aGad~I~vg~g 312 (495)
T PTZ00314 244 ERAAALIEAGVDVLVV-DSSQGNSIY-QIDMIKKLKSNYPHVDIIAG----NVVTADQAKNLIDAGADGLRIGMG 312 (495)
T ss_pred HHHHHHHHCCCCEEEE-ecCCCCchH-HHHHHHHHHhhCCCceEEEC----CcCCHHHHHHHHHcCCCEEEECCc
Confidence 5688899999999887 544333344 35679999999988787772 223345778888999999997654
No 187
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=93.79 E-value=4 Score=38.90 Aligned_cols=127 Identities=12% Similarity=0.194 Sum_probs=74.2
Q ss_pred cCEEEecCCc-cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCcc
Q psy12516 12 CYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 12 ~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
++.|++..-+ -.++|..+.++++.+++.++. .++.+-++-+. -....+..+ ++|+.+|..++..+..
T Consensus 57 ~~tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~eitiE~nP~~--lt~e~l~~lk~~G~nrisiGvQS~~d-------- 126 (353)
T PRK05904 57 FKTIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEFTIECNPEL--ITQSQINLLKKNKVNRISLGVQSMNN-------- 126 (353)
T ss_pred eEEEEECCCccccCCHHHHHHHHHHHHHhcCCCCeEEEEeccCc--CCHHHHHHHHHcCCCEEEEecccCCH--------
Confidence 6788887755 356788899999999887653 34444333222 122333444 4666666655553331
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEGA 167 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r 167 (327)
+++..+.+ +-+ .+.+.+.++.+++.|+. +.+.++ +|-|.
T Consensus 127 ------~vL~~l~R-------------------------~~~----~~~~~~ai~~lr~~G~~~v~~dlI--~GlPg--- 166 (353)
T PRK05904 127 ------NILKQLNR-------------------------THT----IQDSKEAINLLHKNGIYNISCDFL--YCLPI--- 166 (353)
T ss_pred ------HHHHHcCC-------------------------CCC----HHHHHHHHHHHHHcCCCcEEEEEe--ecCCC---
Confidence 12111110 011 34566778888888875 554444 45453
Q ss_pred CChHHHHHHHHHHHHcCcCEE
Q psy12516 168 VPPHNVTRVATALYKMGCYEI 188 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i 188 (327)
-+.+.+.+..+.+.+.+++.|
T Consensus 167 qt~e~~~~tl~~~~~l~p~~i 187 (353)
T PRK05904 167 LKLKDLDEVFNFILKHKINHI 187 (353)
T ss_pred CCHHHHHHHHHHHHhcCCCEE
Confidence 466777888888888887754
No 188
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=93.78 E-value=5.5 Score=36.71 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC-------CCCChHHHHHHHHHHHHcCcCEEEe--cCCCCcc--CHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYE-------GAVPPHNVTRVATALYKMGCYEISL--GDTIGVG--TPG 200 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~-------~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~--~P~ 200 (327)
+|.++..+++++++++.|..+.+-+.. .|..+. +-+++++..++. .+.|+|.+.+ .-..|.- .|.
T Consensus 111 ~eni~~t~~v~~~a~~~gv~veaE~gh-lG~~d~~~~~~g~s~t~~eea~~f~---~~tg~DyLAvaiG~~hg~~~~~~~ 186 (281)
T PRK06806 111 EENIQKTKEIVELAKQYGATVEAEIGR-VGGSEDGSEDIEMLLTSTTEAKRFA---EETDVDALAVAIGNAHGMYNGDPN 186 (281)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeee-ECCccCCcccccceeCCHHHHHHHH---HhhCCCEEEEccCCCCCCCCCCCc
Confidence 344777888899999999888766554 331211 134555544433 3469998887 5555543 122
Q ss_pred HHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 201 TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
-=.++++.+++..+ +|+..|. --|....|...+++.|+..|..
T Consensus 187 l~~~~L~~i~~~~~-iPlV~hG--~SGI~~e~~~~~i~~G~~kinv 229 (281)
T PRK06806 187 LRFDRLQEINDVVH-IPLVLHG--GSGISPEDFKKCIQHGIRKINV 229 (281)
T ss_pred cCHHHHHHHHHhcC-CCEEEEC--CCCCCHHHHHHHHHcCCcEEEE
Confidence 22345677776654 6887775 3377789999999999998654
No 189
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.70 E-value=2.1 Score=39.63 Aligned_cols=82 Identities=10% Similarity=0.093 Sum_probs=70.5
Q ss_pred CCCCChHHHHHHHHHHHHcC-cCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHH
Q psy12516 165 EGAVPPHNVTRVATALYKMG-CYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAME 238 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g-~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~ 238 (327)
+++.+.+.+.++++.+.+.| ++.|.+.-|+| .+++++-.++++.+.+...+ ++|-+|. +++.--++..+..|.+
T Consensus 15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~ 94 (290)
T TIGR00683 15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATE 94 (290)
T ss_pred CCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHH
Confidence 34799999999999999999 99999999999 58899999999888887643 6788885 6777788888999999
Q ss_pred hcCceeee
Q psy12516 239 FGISVFDS 246 (327)
Q Consensus 239 ~G~~~vd~ 246 (327)
+|++.|=.
T Consensus 95 ~Gad~v~v 102 (290)
T TIGR00683 95 LGYDCLSA 102 (290)
T ss_pred hCCCEEEE
Confidence 99998765
No 190
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.70 E-value=3.9 Score=34.71 Aligned_cols=97 Identities=23% Similarity=0.276 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc----CHHHHHHHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG----TPGTMRLMLE 207 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~----~P~~~~~~~~ 207 (327)
++..+.++++.+.+ +.++.+..+.. |... .+++.+.++++.+.+.|++.| +++.|.. ....+.++.+
T Consensus 97 ~~~~~~~~~i~~~~-~~~~pv~iy~~-----p~~~-~~~~~~~~~~~~~~~~g~~~i--K~~~~~~~~~~~~~~~~~i~~ 167 (201)
T cd00945 97 EEVLEEIAAVVEAA-DGGLPLKVILE-----TRGL-KTADEIAKAARIAAEAGADFI--KTSTGFGGGGATVEDVKLMKE 167 (201)
T ss_pred HHHHHHHHHHHHHh-cCCceEEEEEE-----CCCC-CCHHHHHHHHHHHHHhCCCEE--EeCCCCCCCCCCHHHHHHHHH
Confidence 33345555555555 45787765433 2211 377888888888888888875 5666632 5555555443
Q ss_pred HHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcCcee
Q psy12516 208 DVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVF 244 (327)
Q Consensus 208 ~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v 244 (327)
..+ ..++..-.-.+ ...+...++..|++.+
T Consensus 168 ----~~~~~~~v~~~gg~~---~~~~~~~~~~~Ga~g~ 198 (201)
T cd00945 168 ----AVGGRVGVKAAGGIK---TLEDALAAIEAGADGI 198 (201)
T ss_pred ----hcccCCcEEEECCCC---CHHHHHHHHHhcccee
Confidence 333 23454433222 2467788888888754
No 191
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.68 E-value=1.8 Score=39.90 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHHHHcCcCEEEec----------CCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLG----------DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~----------Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
.+++.+.+.++.+.++|+|.|.|- +..| -.|+.+.++++.+++.. +.||.+-.--+..-....+..+.
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~ 176 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAE 176 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHH
Confidence 457899999999999999987771 2222 57899999999999886 46777766544333344455677
Q ss_pred HhcCceeee
Q psy12516 238 EFGISVFDS 246 (327)
Q Consensus 238 ~~G~~~vd~ 246 (327)
++|++.|+.
T Consensus 177 ~~G~d~i~~ 185 (296)
T cd04740 177 EAGADGLTL 185 (296)
T ss_pred HcCCCEEEE
Confidence 899998754
No 192
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=93.66 E-value=6 Score=37.40 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=76.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
+.++++.++|++.+++.= .+ .+-.+-+..+++..| +|+..-.|-++-+ ++.|+++|++-+-..=+.+|.
T Consensus 46 ~Qi~~L~~aGceiVRvav----~~-~~~a~al~~I~~~~~-iPlvADIHFd~~l----Al~a~~~G~~~iRINPGNig~- 114 (360)
T PRK00366 46 AQIKRLARAGCEIVRVAV----PD-MEAAAALPEIKKQLP-VPLVADIHFDYRL----ALAAAEAGADALRINPGNIGK- 114 (360)
T ss_pred HHHHHHHHcCCCEEEEcc----CC-HHHHHhHHHHHHcCC-CCEEEecCCCHHH----HHHHHHhCCCEEEECCCCCCc-
Confidence 567889999999777653 12 334555777888886 8888888888865 478899999998643334432
Q ss_pred CCCCCccCCCcHHHHHHHhhhh--hcccCcchhhhhhhhhHHHHHHhhcC-ChHHHHHHHHHHHHHHHHcCCe
Q psy12516 82 PYARGASGNVATEDLVYMLEGK--SMQCGVKEIAVFASASEMFSKRNINC-TIEESLERFSEVVSTALTNGIR 151 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~--~~~~Gid~i~l~~~~sd~~~~~~l~~-s~ee~i~~~~~~v~~a~~~Gi~ 151 (327)
+ .-..+.++...++. .+.-|++.= +++..+. .+++. +.+-.++.+.+.++.+.+.|++
T Consensus 115 -----~--~~~v~~vv~~ak~~~ipIRIGvN~G----SL~~~~~-~~yg~~t~eamveSAl~~~~~le~~~f~ 175 (360)
T PRK00366 115 -----R--DERVREVVEAAKDYGIPIRIGVNAG----SLEKDLL-EKYGEPTPEALVESALRHAKILEELGFD 175 (360)
T ss_pred -----h--HHHHHHHHHHHHHCCCCEEEecCCc----cChHHHH-HHcCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 0 11234445444432 233344332 2222211 12343 5566677777777778787775
No 193
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=93.66 E-value=3.5 Score=39.48 Aligned_cols=130 Identities=11% Similarity=0.167 Sum_probs=73.5
Q ss_pred CcCEEEecCCc-cccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
+++.|.+.+-+ -.++|..+.++++.+++.++- .++.+.++- +.-....+..+ ++|+.++..++..+..
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p--~~l~~e~l~~l~~~G~~rvsiGvqS~~~----- 123 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANP--GDLTKEKLQVLKDSGVNRISLGVQTFND----- 123 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCC--CCCCHHHHHHHHHcCCCEEEEecccCCH-----
Confidence 46678876533 346688899999999887652 233333321 11122334444 4666666655553331
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPY 164 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~ 164 (327)
++...+ +-+.+ .+.+.+.++.+++.|+. +.+.+ ++|-|.
T Consensus 124 ---------~~l~~l-------------------------~r~~~----~~~~~~~i~~l~~~g~~~v~~dl--i~GlPg 163 (377)
T PRK08599 124 ---------ELLKKI-------------------------GRTHN----EEDVYEAIANAKKAGFDNISIDL--IYALPG 163 (377)
T ss_pred ---------HHHHHc-------------------------CCCCC----HHHHHHHHHHHHHcCCCcEEEee--ecCCCC
Confidence 111111 00111 34566778888888886 44333 355554
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+..+.+.+.+++.|.+
T Consensus 164 ---qt~~~~~~~l~~~~~l~~~~i~~ 186 (377)
T PRK08599 164 ---QTIEDFKESLAKALALDIPHYSA 186 (377)
T ss_pred ---CCHHHHHHHHHHHHccCCCEEee
Confidence 36678888888888888886544
No 194
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.55 E-value=1.5 Score=39.48 Aligned_cols=93 Identities=17% Similarity=0.240 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe--cCCCCccCHHHHHHHHHHHHHhc
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL--GDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
+...++++.+++.|+++...+. | .++.+.+..+.+. ....+++ .-..|.-.+..+.+.++.+|+..
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~-----p---~T~~e~l~~~~~~----~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~ 183 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTS-----P---KFPDLLIHRLSKL----SPLFIYYGLRPATGVPLPVSVERNIKRVRNLV 183 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEEC-----C---CCCHHHHHHHHHh----CCCEEEEEeCCCCCCCchHHHHHHHHHHHHhc
Confidence 4567789999999999764322 1 2455555554443 2333433 22345567888899999999887
Q ss_pred CCCeEEEeecCCcCc-HHHHHHHHHHhcCcee
Q psy12516 214 PADRLAVHCHDTYGQ-ALANILTAMEFGISVF 244 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~-a~an~l~a~~~G~~~v 244 (327)
++.++.+ +.|. ...++-.++++|+|.+
T Consensus 184 ~~~~i~v----~gGI~~~e~i~~~~~~gaD~v 211 (244)
T PRK13125 184 GNKYLVV----GFGLDSPEDARDALSAGADGV 211 (244)
T ss_pred CCCCEEE----eCCcCCHHHHHHHHHcCCCEE
Confidence 6555554 4466 3456666679998864
No 195
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.50 E-value=0.96 Score=43.77 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCC
Q psy12516 173 VTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G 252 (327)
..+.++.+.++|+|.|.+ |+.. -.+..+.++++.+|+.+|+.+|...-=-+ ...+..++++|+|.|.. |+|
T Consensus 154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~T----~e~a~~l~~aGaD~I~v---G~g 224 (404)
T PRK06843 154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIVT----KEAALDLISVGADCLKV---GIG 224 (404)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecCC----HHHHHHHHHcCCCEEEE---CCC
Confidence 567788899999999988 5544 33688999999999999987665533223 46678889999999884 555
Q ss_pred C
Q psy12516 253 G 253 (327)
Q Consensus 253 ~ 253 (327)
.
T Consensus 225 ~ 225 (404)
T PRK06843 225 P 225 (404)
T ss_pred C
Confidence 3
No 196
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=93.46 E-value=3 Score=37.84 Aligned_cols=97 Identities=15% Similarity=0.270 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC-cCEEEecCCCCcc--CHHHHHHHHHHHH
Q psy12516 134 SLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG-CYEISLGDTIGVG--TPGTMRLMLEDVL 210 (327)
Q Consensus 134 ~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g-~~~i~l~Dt~G~~--~P~~~~~~~~~~~ 210 (327)
..+...++++.+++.|+.....+ .| .++.+.+..+.+.. -| +..+.....+|.- .+.++.+.++.+|
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv-----~P---~T~~eri~~i~~~~--~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr 194 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLV-----AP---NADDERLKQIAEKS--QGFVYLVSRAGVTGARNRAASALNELVKRLK 194 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEE-----CC---CCCHHHHHHHHHhC--CCCEEEEECCCCCCCcccCChhHHHHHHHHH
Confidence 35667788899999999864211 22 24556655555432 12 2334445666763 4567999999999
Q ss_pred HhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCceee
Q psy12516 211 TVIPADRLAVHCHDTYGQA-LANILTAMEFGISVFD 245 (327)
Q Consensus 211 ~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~vd 245 (327)
+..+ .++.+ +.|.. -.++..+.++|+|.|=
T Consensus 195 ~~~~-~pi~v----gfGI~~~e~~~~~~~~GADgvV 225 (256)
T TIGR00262 195 AYSA-KPVLV----GFGISKPEQVKQAIDAGADGVI 225 (256)
T ss_pred hhcC-CCEEE----eCCCCCHHHHHHHHHcCCCEEE
Confidence 8754 35554 34554 4567777889998643
No 197
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=93.46 E-value=3.1 Score=40.22 Aligned_cols=128 Identities=11% Similarity=0.092 Sum_probs=77.8
Q ss_pred cCEEEecC-CccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCC
Q psy12516 12 CYEISLGD-TIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARG 86 (327)
Q Consensus 12 ~~~i~~~D-t~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~ 86 (327)
++.|+|.+ |-..++|..+.++++.+++.+|- .++.+-++-+. -...-+..+ ++|+++|..++.-+..
T Consensus 74 i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~--~~~e~L~~l~~~GvnrisiGvQS~~~------ 145 (394)
T PRK08898 74 VHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGT--FEAEKFAQFRASGVNRLSIGIQSFND------ 145 (394)
T ss_pred eeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCC--CCHHHHHHHHHcCCCeEEEecccCCH------
Confidence 67999998 66888999999999999999863 35655554222 123445555 6788888866653331
Q ss_pred ccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q psy12516 87 ASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG 166 (327)
Q Consensus 87 ~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~ 166 (327)
+++..+. . .-+ .+.+.+.++.+++.+..+.+.+ ++|-|..
T Consensus 146 --------~~L~~l~---R----------------------~~~----~~~~~~~i~~~~~~~~~v~~dl--I~GlPgq- 185 (394)
T PRK08898 146 --------AHLKALG---R----------------------IHD----GAEARAAIEIAAKHFDNFNLDL--MYALPGQ- 185 (394)
T ss_pred --------HHHHHhC---C----------------------CCC----HHHHHHHHHHHHHhCCceEEEE--EcCCCCC-
Confidence 2221110 0 001 2234445566666555555444 4555542
Q ss_pred CCChHHHHHHHHHHHHcCcCEEE
Q psy12516 167 AVPPHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~ 189 (327)
+.+.+.+-.+.+.+.+++.|.
T Consensus 186 --t~~~~~~~l~~~~~l~p~~is 206 (394)
T PRK08898 186 --TLDEALADVETALAFGPPHLS 206 (394)
T ss_pred --CHHHHHHHHHHHHhcCCCEEE
Confidence 566777777888888887654
No 198
>PRK09358 adenosine deaminase; Provisional
Probab=93.31 E-value=5.7 Score=37.36 Aligned_cols=194 Identities=16% Similarity=0.139 Sum_probs=100.4
Q ss_pred HHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEec---c---cCCCCC-C---CCCC----ccCCCcHHHHHHHh
Q psy12516 36 VLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSS---I---AGLGGC-P---YARG----ASGNVATEDLVYML 100 (327)
Q Consensus 36 ~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~---~---~glg~~-p---~~~~----~~gn~~~e~v~~~l 100 (327)
+.+.+| +++.|.|=+..+....+.+-. +.|+..-..+ + .+.+.+ + |... ..-....|++....
T Consensus 6 ~~~~lp--K~eLH~Hl~Gs~~~~~l~~l~~~~~~~~p~~~~~~~~~~r~~~~~~~l~~~l~~~~~~~~~~~t~ed~~~~~ 83 (340)
T PRK09358 6 IIRSLP--KAELHLHLDGSLRPETILELARRNGIALPATDVEELPWVRAAYDFRDLQSFLDKYDAGVAVLQTEEDLRRLA 83 (340)
T ss_pred HHhcCC--ceeEEecccCCCCHHHHHHHHHHcCCCCCCCCHHHHhhhcccccCCCHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445566 688999988888777776666 5676643211 1 333332 1 1000 00112334443322
Q ss_pred h---hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH-HHcCCeEEEEEeeeccCCCCCCCChHHHHHH
Q psy12516 101 E---GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA-LTNGIRVRGYISCVVGCPYEGAVPPHNVTRV 176 (327)
Q Consensus 101 ~---~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a-~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~ 176 (327)
. ...++.|+..+.+... .. .....+.+.++.++.+.+.++.+ ++.|+++...++.. . ..+++...+.
T Consensus 84 ~~~~~e~~~~Gvty~E~~~~--p~-~~~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~---r---~~~~~~~~~~ 154 (340)
T PRK09358 84 FEYLEDAAADGVVYAEIRFD--PQ-LHTERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFM---R---HFGEEAAARE 154 (340)
T ss_pred HHHHHHHHHcCCEEEEEEeC--hh-hhhhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEec---C---CCCHHHHHHH
Confidence 2 2345566654433321 11 11123667788888777776654 55688876554421 0 1234444445
Q ss_pred HHHHHH--cCcCEE--EecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHH-hcCcee
Q psy12516 177 ATALYK--MGCYEI--SLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVF 244 (327)
Q Consensus 177 ~~~~~~--~g~~~i--~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~-~G~~~v 244 (327)
.+.+.+ .+...+ .++..-...+|..+.+.+...++. ++++.+|+....+ ..+...+++ .|++++
T Consensus 155 ~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~--g~~~~~H~~E~~~--~~~~~~al~~lg~~ri 223 (340)
T PRK09358 155 LEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDA--GLRLTAHAGEAGG--PESIWEALDELGAERI 223 (340)
T ss_pred HHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHC--CCCeEEcCCCCCc--hhHHHHHHHHcCCccc
Confidence 444444 332333 332121224667777777776653 4678888876443 234556666 788764
No 199
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=93.27 E-value=2.2 Score=39.72 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=69.0
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHH--HHHHHHhcC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLM--LEDVLTVIP 214 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~--~~~~~~~~~ 214 (327)
-.++++++.+.|..+- ++ + +-.+.+++.+..+.+.+.|. +.+-+.-|+..-+|.+-..+ +..+++.+
T Consensus 136 ~~plik~iA~~~kPiI--lS--T-----Gma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F- 205 (347)
T COG2089 136 DLPLIKYIAKKGKPII--LS--T-----GMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF- 205 (347)
T ss_pred ChHHHHHHHhcCCCEE--EE--c-----ccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-
Confidence 3466777777777653 22 2 23677889999999999986 47778888888888765554 66777888
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
+..+++-=| -++.+..++|+..||..|+
T Consensus 206 n~~vGlSDH---T~g~~a~l~AvALGA~viE 233 (347)
T COG2089 206 NAIVGLSDH---TLGILAPLAAVALGASVIE 233 (347)
T ss_pred CCccccccC---ccchhHHHHHHHhccccee
Confidence 457887544 2337889999999998764
No 200
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=93.16 E-value=5.3 Score=39.56 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~ 211 (327)
.+.+.+.++.+++.|+.+.+.++ +|.|.+ +.+.+.+..+.+.+.+++.+.+ ..++|.-=..+...+++
T Consensus 322 ~~~~~~~i~~~~~~Gi~v~~~~I--iGlPge---t~e~~~~ti~~~~~l~~~~~~~----~~l~P~PGT~l~~~~~~ 389 (472)
T TIGR03471 322 VEIARRFTRDCHKLGIKVHGTFI--LGLPGE---TRETIRKTIDFAKELNPHTIQV----SLAAPYPGTELYDQAKQ 389 (472)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEE--EeCCCC---CHHHHHHHHHHHHhcCCCceee----eecccCCCcHHHHHHHH
Confidence 45577788999999999876655 566654 5778888888888888886643 44566544455555554
No 201
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=93.10 E-value=5 Score=37.70 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=54.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCC-eeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~-~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg 79 (327)
++++++.+.|+..|.|..---.+. .++.++++.+++. +.. .+.+ .+.|.-+......+ ++|++.+.+|+.++.
T Consensus 52 ~li~~~~~~Gv~~I~~tGGEPllr-~dl~~li~~i~~~-~~l~~i~i---tTNG~ll~~~~~~L~~aGl~~v~ISlDs~~ 126 (329)
T PRK13361 52 WLAQAFTELGVRKIRLTGGEPLVR-RGCDQLVARLGKL-PGLEELSL---TTNGSRLARFAAELADAGLKRLNISLDTLR 126 (329)
T ss_pred HHHHHHHHCCCCEEEEECcCCCcc-ccHHHHHHHHHhC-CCCceEEE---EeChhHHHHHHHHHHHcCCCeEEEEeccCC
Confidence 345667788999999964222222 2455666666553 222 3444 34466566655555 689999999998876
Q ss_pred CCCCCCCccCCCcHHHHHHHhh
Q psy12516 80 GCPYARGASGNVATEDLVYMLE 101 (327)
Q Consensus 80 ~~p~~~~~~gn~~~e~v~~~l~ 101 (327)
..-|...+ +....+.++..++
T Consensus 127 ~e~~~~i~-~~g~~~~vl~~i~ 147 (329)
T PRK13361 127 PELFAALT-RNGRLERVIAGID 147 (329)
T ss_pred HHHhhhhc-CCCCHHHHHHHHH
Confidence 53343322 2334555555443
No 202
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.07 E-value=2.4 Score=39.33 Aligned_cols=78 Identities=18% Similarity=0.116 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHHcC-cCEEEe-----cCCC-Cc---cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 168 VPPHNVTRVATALYKMG-CYEISL-----GDTI-GV---GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g-~~~i~l-----~Dt~-G~---~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
.+++.+.+.++++.++| +|.|.| .... |. ..|+.+.++++.+++.. +.||.+..--+.--...-+..+.
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~ 179 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAE 179 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHH
Confidence 46889999999999999 998877 1111 32 35899999999999887 46888876544433344455677
Q ss_pred HhcCceeee
Q psy12516 238 EFGISVFDS 246 (327)
Q Consensus 238 ~~G~~~vd~ 246 (327)
++|++.|+.
T Consensus 180 ~~G~d~i~~ 188 (301)
T PRK07259 180 EAGADGLSL 188 (301)
T ss_pred HcCCCEEEE
Confidence 899998764
No 203
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=92.98 E-value=5.9 Score=39.48 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCC-eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 135 LERFSEVVSTALTNGI-RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi-~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
.+.+.+.++.+++.|+ .+...++ +|-|. -+.+.+.+..+.+.+.+++.+.+-
T Consensus 304 ~e~v~~ai~~ar~~Gf~~In~DLI--~GLPg---Et~ed~~~tl~~l~~L~pd~isv~ 356 (488)
T PRK08207 304 VEDIIEKFHLAREMGFDNINMDLI--IGLPG---EGLEEVKHTLEEIEKLNPESLTVH 356 (488)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEE--eCCCC---CCHHHHHHHHHHHHhcCcCEEEEE
Confidence 4567778889999999 5554444 56564 367888899999999999876653
No 204
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=92.94 E-value=1.7 Score=41.11 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----------CCCChHHHHHHHHHHHH-cCcCE--EEecCCCCc
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----------GAVPPHNVTRVATALYK-MGCYE--ISLGDTIGV 196 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----------~r~~~e~l~~~~~~~~~-~g~~~--i~l~Dt~G~ 196 (327)
+.+|.++..++++++|+..|+.|++-+...-|.++. ..++|++..+++++.-. .|+|. +.+.-..|.
T Consensus 135 p~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~ 214 (345)
T cd00946 135 PLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGV 214 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccC
Confidence 567889999999999999999999888775444332 14688888877776532 37774 455556665
Q ss_pred cC---HHHHHHHHHHH----HHhcC-----CCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 197 GT---PGTMRLMLEDV----LTVIP-----ADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 197 ~~---P~~~~~~~~~~----~~~~~-----~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
-. |.==.++++.+ ++..+ ++||.+|. --|..-.....|++.|+.-|..
T Consensus 215 Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHG--gSG~~~e~i~kai~~GI~KiNi 274 (345)
T cd00946 215 YKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHG--GSGSTKEEIREAISYGVVKMNI 274 (345)
T ss_pred CCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeC--CCCCCHHHHHHHHHcCCeeEEe
Confidence 42 33223344444 55553 35666665 4477788889999999887643
No 205
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=92.94 E-value=1 Score=42.60 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=59.4
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCC-CCccCHHHHHHHHHHHHHhcCCCeEEE-------eecCCcCcHHHHHHHHH-
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDT-IGVGTPGTMRLMLEDVLTVIPADRLAV-------HCHDTYGQALANILTAM- 237 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~~~~~~~~~~~~~~~~~l~~-------H~Hn~~g~a~an~l~a~- 237 (327)
+.++|.+.+.++.+.+.|+++|.|.+- .-...++.+.++++.+++..|++.+.. |.+.+.|+-....+..+
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 468999999999999999999999832 213467778999999999877544322 33567787777666665
Q ss_pred HhcCceee
Q psy12516 238 EFGISVFD 245 (327)
Q Consensus 238 ~~G~~~vd 245 (327)
++|++.+.
T Consensus 149 eAGl~~i~ 156 (343)
T TIGR03551 149 EAGLDSMP 156 (343)
T ss_pred HhCccccc
Confidence 77999876
No 206
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=92.85 E-value=1.9 Score=37.13 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=65.5
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ 228 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~ 228 (327)
.+.+-+.+..-+...+. ..+|- .+-++.+.+.|+|.|.+ |-+....|..+.++++.+++++ ..+-.-+ .
T Consensus 32 ~lPIIGi~K~~y~~~~V-~ITPT--~~ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~--~l~MADi-s---- 100 (192)
T PF04131_consen 32 DLPIIGIIKRDYPDSDV-YITPT--LKEVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY--QLVMADI-S---- 100 (192)
T ss_dssp -S-EEEE-B-SBTTSS---BS-S--HHHHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT--SEEEEE--S----
T ss_pred CCCEEEEEeccCCCCCe-EECCC--HHHHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC--cEEeeec-C----
Confidence 56666655542211111 22332 24456778899999987 6777888899999999999987 2332222 1
Q ss_pred HHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 229 ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 229 a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
-+...+.|.++|+|.|-+|+.|+=+ .. .+..|=-+++..|.+.+
T Consensus 101 t~ee~~~A~~~G~D~I~TTLsGYT~--~t---~~~~pD~~lv~~l~~~~ 144 (192)
T PF04131_consen 101 TLEEAINAAELGFDIIGTTLSGYTP--YT---KGDGPDFELVRELVQAD 144 (192)
T ss_dssp SHHHHHHHHHTT-SEEE-TTTTSST--TS---TTSSHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCEEEcccccCCC--CC---CCCCCCHHHHHHHHhCC
Confidence 1578899999999999999999875 22 22445555666665543
No 207
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.83 E-value=6.1 Score=37.21 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEecCccch--HHHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhh
Q psy12516 27 GTMRLMLEDVLTVIPADRLAVHCHDTYGQ--ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKS 104 (327)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~H~h~~~g~--~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~ 104 (327)
..+..++..+.+.+. +|+.+|. |-|. .+..+..|+++|-.+++.+ +.++-+-++
T Consensus 71 ~~~~~~~~~~A~~~~-VPV~lHL--DH~~~~~~e~i~~ai~~G~~~~~~~---------------~~~~FsSVM------ 126 (340)
T cd00453 71 ISGAHHVHQMAEHYG-VPVILHT--DHCAKKLLPWIDGLLDAGEKHFAAT---------------GKPLFSSHM------ 126 (340)
T ss_pred HHHHHHHHHHHHHCC-CCEEEEc--CCCCCCCHHHHHHHHHcCCcccccc---------------CCCCceeEE------
Confidence 345555555555553 7777765 3333 5678888888886554421 122110000
Q ss_pred cccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----------CCCChHHHH
Q psy12516 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----------GAVPPHNVT 174 (327)
Q Consensus 105 ~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----------~r~~~e~l~ 174 (327)
+|. | ..+.+|+++..++++++|+..|+.|++-+...-|.++. ..++||+..
T Consensus 127 ----iDg-------S--------~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~ 187 (340)
T cd00453 127 ----IDL-------S--------EESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVD 187 (340)
T ss_pred ----ecC-------C--------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCcccccccccccCCCHHHHH
Confidence 111 1 12345668899999999999999999888875444432 034677776
Q ss_pred HHHHHHHHcC----cCE--EEecCCCCcc---CHHHHHHHHHHHHHhc--------CCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 175 RVATALYKMG----CYE--ISLGDTIGVG---TPGTMRLMLEDVLTVI--------PADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 175 ~~~~~~~~~g----~~~--i~l~Dt~G~~---~P~~~~~~~~~~~~~~--------~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
++++ +.| +|. +.+.-..|.- .|.==.++++.+++.+ +++||.+|.= -|..-.....++
T Consensus 188 ~Fv~---~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGg--SG~~~e~~~~ai 262 (340)
T cd00453 188 YAYT---ELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGG--SGSTAQEIKDSV 262 (340)
T ss_pred HHHH---HhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceEEeCC--CCCCHHHHHHHH
Confidence 6665 445 664 4444455653 2322233455555544 2567777654 455566778888
Q ss_pred HhcCceee
Q psy12516 238 EFGISVFD 245 (327)
Q Consensus 238 ~~G~~~vd 245 (327)
..|+..|.
T Consensus 263 ~~Gi~KiN 270 (340)
T cd00453 263 SYGVVKMN 270 (340)
T ss_pred HcCCeEEE
Confidence 89887654
No 208
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=92.74 E-value=2.4 Score=39.45 Aligned_cols=82 Identities=12% Similarity=0.049 Sum_probs=67.0
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhc
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFG 240 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G 240 (327)
+++.|.+.+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+++..+ .+|+-++.-.+..-++..+..|.++|
T Consensus 22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~G 101 (303)
T PRK03620 22 DGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAG 101 (303)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999999 5889999999988887764 36777776545556677777788999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
++.+=.
T Consensus 102 adav~~ 107 (303)
T PRK03620 102 ADGILL 107 (303)
T ss_pred CCEEEE
Confidence 998743
No 209
>PLN02417 dihydrodipicolinate synthase
Probab=92.72 E-value=2.3 Score=39.12 Aligned_cols=100 Identities=13% Similarity=0.194 Sum_probs=78.0
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+-+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+..++ +++-.+. +++.--++..+..|.++|
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~G 96 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVG 96 (280)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999 57888888888887777654 6777766 567778888899999999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++.+=..- |+ ...++-++++.+++.
T Consensus 97 adav~~~~------P~----y~~~~~~~i~~~f~~ 121 (280)
T PLN02417 97 MHAALHIN------PY----YGKTSQEGLIKHFET 121 (280)
T ss_pred CCEEEEcC------Cc----cCCCCHHHHHHHHHH
Confidence 99765532 22 123455777776654
No 210
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=92.72 E-value=5.6 Score=36.66 Aligned_cols=96 Identities=14% Similarity=0.063 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc--cC-HHHHHHHHHHHHHhcC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV--GT-PGTMRLMLEDVLTVIP 214 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~--~~-P~~~~~~~~~~~~~~~ 214 (327)
++++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+...|.-...... .. ...+...+..+.+..+
T Consensus 4 ~~~~l~~A~~~~yav~A-----fn-----~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 73 (282)
T TIGR01859 4 GKEILQKAKKEGYAVGA-----FN-----FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS 73 (282)
T ss_pred HHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC
Confidence 56778889999987742 32 257889999999999998876554332222 12 3456677777777765
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.+|+.+|. |-|.-......|+++|++.|-
T Consensus 74 ~vpv~lhl--DH~~~~e~i~~ai~~Gf~sVm 102 (282)
T TIGR01859 74 IVPVALHL--DHGSSYESCIKAIKAGFSSVM 102 (282)
T ss_pred CCeEEEEC--CCCCCHHHHHHHHHcCCCEEE
Confidence 36888884 444457888999999998753
No 211
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.71 E-value=7.3 Score=35.04 Aligned_cols=190 Identities=14% Similarity=0.099 Sum_probs=96.4
Q ss_pred HHHHHHcCcCEEEecCCc----------cccCHHHHHHHHHHHHhhcCCCeeEEEecCccch---HHHHHHHHHHcCCcE
Q psy12516 4 ASALYKMGCYEISLGDTI----------GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ---ALANILTAMEFGISV 70 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt~----------G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~---~~~~~~~a~~aG~~~ 70 (327)
++.+.+.|.+.|.+.|.. +..+..++...++.+.+... .|+....=.-+|. ...++...+++|+.-
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~-~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~g 100 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVD-LPVIADADTGYGNALNVARTVRELEEAGAAG 100 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhcc-CCEEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 566778899999998876 45556667777777766553 4444443333332 222223333566665
Q ss_pred EEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc-C
Q psy12516 71 FDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN-G 149 (327)
Q Consensus 71 id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~-G 149 (327)
+..-=.-... +.|+.. .+.-.+.+|..++++.+.+.+.+. .
T Consensus 101 v~iED~~~~k------~~g~~~--------------------------------~~~~~~~ee~~~ki~aa~~a~~~~~~ 142 (243)
T cd00377 101 IHIEDQVGPK------KCGHHG--------------------------------GKVLVPIEEFVAKIKAARDARDDLPD 142 (243)
T ss_pred EEEecCCCCc------cccCCC--------------------------------CCeecCHHHHHHHHHHHHHHHhccCC
Confidence 5421110000 111110 000113344455556555555442 3
Q ss_pred CeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH
Q psy12516 150 IRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA 229 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a 229 (327)
+-+.+- .+++ ..+....++.++.++...++|+|.+.+. |..+++++.++ .+..+ .|+-+.......
T Consensus 143 ~~IiAR-TDa~---~~~~~~~~eai~Ra~ay~~AGAD~v~v~---~~~~~~~~~~~----~~~~~-~Pl~~~~~~~~~-- 208 (243)
T cd00377 143 FVIIAR-TDAL---LAGEEGLDEAIERAKAYAEAGADGIFVE---GLKDPEEIRAF----AEAPD-VPLNVNMTPGGN-- 208 (243)
T ss_pred eEEEEE-cCch---hccCCCHHHHHHHHHHHHHcCCCEEEeC---CCCCHHHHHHH----HhcCC-CCEEEEecCCCC--
Confidence 322210 0011 0112467888899999999999998874 22356555444 44444 577765443322
Q ss_pred HHHHHHHHHhcCceeee
Q psy12516 230 LANILTAMEFGISVFDS 246 (327)
Q Consensus 230 ~an~l~a~~~G~~~vd~ 246 (327)
.-+.-...+.|++++-.
T Consensus 209 ~~~~~~l~~lG~~~v~~ 225 (243)
T cd00377 209 LLTVAELAELGVRRVSY 225 (243)
T ss_pred CCCHHHHHHCCCeEEEE
Confidence 12233344567776653
No 212
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=92.65 E-value=6.1 Score=33.99 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe-c----CCCCccCHHHHHHHHHHHHHh
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL-G----DTIGVGTPGTMRLMLEDVLTV 212 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l-~----Dt~G~~~P~~~~~~~~~~~~~ 212 (327)
..++++++++.|+++...+.. ..++++..+ +.+.|+|.+.+ . .+.| +....+.++.+++.
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~--------~~t~~e~~~----~~~~~~d~v~~~~~~~~~~~~---~~~~~~~i~~~~~~ 156 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIG--------VEDPEKRAK----LLKLGVDIVILHRGIDAQAAG---GWWPEDDLKKVKKL 156 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeC--------CCCHHHHHH----HHHCCCCEEEEcCcccccccC---CCCCHHHHHHHHhh
Confidence 456778888889877532121 234444432 55678898776 2 2222 12233445555543
Q ss_pred cCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 213 IPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 213 ~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
++.++.. +.|-...|...++++|++.+=
T Consensus 157 -~~~~i~~----~GGI~~~~i~~~~~~Gad~vv 184 (202)
T cd04726 157 -LGVKVAV----AGGITPDTLPEFKKAGADIVI 184 (202)
T ss_pred -cCCCEEE----ECCcCHHHHHHHHhcCCCEEE
Confidence 3445555 346667899999999999753
No 213
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=92.63 E-value=7 Score=34.70 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhc
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
..+++++.|+.|+++...+. | .++.+.+..+... +|.|.+ +.-.|...-..+.+.++.+++..
T Consensus 99 ~~~~l~~Ir~~g~k~Glaln-----P---~T~~~~i~~~l~~-----vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~ 165 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLN-----P---ATPVDILDWVLPE-----LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKI 165 (223)
T ss_pred HHHHHHHHHHCCCceeEEeC-----C---CCCHHHHHHHHhh-----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHH
Confidence 34566777888887765433 2 2456666555442 232221 23344444444555566666654
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+...+.+..--|-|....|.-...++|++.+=+
T Consensus 166 ~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~ 198 (223)
T PRK08745 166 DALGKPIRLEIDGGVKADNIGAIAAAGADTFVA 198 (223)
T ss_pred HhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 432233444558899999999999999987543
No 214
>PRK12928 lipoyl synthase; Provisional
Probab=92.61 E-value=6.5 Score=36.39 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcC--CeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTNG--IRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~G--i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.++..++++.+++.| +.+...++.-+| =+.+++.+..+.+.+.+++.+.+
T Consensus 187 ~e~~le~l~~ak~~gp~i~~~s~iIvG~G------ET~ed~~etl~~Lrel~~d~v~i 238 (290)
T PRK12928 187 YQRSLDLLARAKELAPDIPTKSGLMLGLG------ETEDEVIETLRDLRAVGCDRLTI 238 (290)
T ss_pred HHHHHHHHHHHHHhCCCceecccEEEeCC------CCHHHHHHHHHHHHhcCCCEEEE
Confidence 455677888999988 776655554332 25688899999999999998876
No 215
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=92.60 E-value=3.1 Score=37.12 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCC-CCccCHHHHHHHHHHHHH
Q psy12516 133 ESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDT-IGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 133 e~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~~~~~~~~~~~ 211 (327)
+.++.+..+++.|++.|+.+..- .+..+.+.....+++.+...++.+.++|+|.|-..-+ ....++.++.. +..+.+
T Consensus 109 ~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~-~~~~~~ 186 (236)
T PF01791_consen 109 EVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVEL-MRKAVE 186 (236)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHH-HHHHHH
Confidence 34777888999999999987533 3222111112235667899999999999998776544 22344455554 444444
Q ss_pred hcCCCe----EEEee---cCCcCcHHHHHHHHHHhcCceee
Q psy12516 212 VIPADR----LAVHC---HDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 212 ~~~~~~----l~~H~---Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.++- | +-+=. +.++--.+..++..+++|++++=
T Consensus 187 ~~~~-p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G 226 (236)
T PF01791_consen 187 AAPV-PGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIG 226 (236)
T ss_dssp THSS-TTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEE
T ss_pred hcCC-CcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHH
Confidence 3331 2 22211 11111235666777899997643
No 216
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=92.44 E-value=7.3 Score=34.42 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhc
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
..+++++.|+.|.++...+. | .++.+.+..+...+ |-|.+ +.-.|...-.++-+.++.+|+..
T Consensus 98 ~~r~i~~Ik~~G~kaGv~ln-----P---~Tp~~~i~~~l~~v-----D~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~ 164 (220)
T COG0036 98 IHRTIQLIKELGVKAGLVLN-----P---ATPLEALEPVLDDV-----DLVLLMSVNPGFGGQKFIPEVLEKIRELRAMI 164 (220)
T ss_pred HHHHHHHHHHcCCeEEEEEC-----C---CCCHHHHHHHHhhC-----CEEEEEeECCCCcccccCHHHHHHHHHHHHHh
Confidence 55667888888988765433 3 25556666555433 43332 34455555556777788888877
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCcee-eec
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVF-DSS 247 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v-d~s 247 (327)
++.. .+-.--|-|.-..|+-.+.++|++.+ -+|
T Consensus 165 ~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 165 DERL-DILIEVDGGINLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred cccC-CeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence 6421 33334488999999999999999985 444
No 217
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=92.43 E-value=2.5 Score=38.98 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=69.7
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+-+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+++..++ ++|-+|. +++..-++..+..|.++|
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999 58889988899888887754 6777766 457788888889999999
Q ss_pred Cceeeecc
Q psy12516 241 ISVFDSSI 248 (327)
Q Consensus 241 ~~~vd~s~ 248 (327)
++.+=..-
T Consensus 97 ~d~v~~~p 104 (292)
T PRK03170 97 ADGALVVT 104 (292)
T ss_pred CCEEEECC
Confidence 99876543
No 218
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=92.42 E-value=5.1 Score=39.50 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=51.2
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecc
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 75 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~ 75 (327)
+.++.+.+.|+|.|.+ |++ |. + ..+.+.++++++.+|++++..= .......+..++++|++.|.+++
T Consensus 227 ~r~~~L~~aG~d~I~v-d~a~g~-~-~~~~~~i~~i~~~~~~~~vi~G----~v~t~~~a~~l~~aGad~i~vg~ 294 (450)
T TIGR01302 227 ERAEALVKAGVDVIVI-DSSHGH-S-IYVIDSIKEIKKTYPDLDIIAG----NVATAEQAKALIDAGADGLRVGI 294 (450)
T ss_pred HHHHHHHHhCCCEEEE-ECCCCc-H-hHHHHHHHHHHHhCCCCCEEEE----eCCCHHHHHHHHHhCCCEEEECC
Confidence 5678899999998887 554 43 2 3577789999999888887772 23345677888899999999865
No 219
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=92.41 E-value=8.1 Score=34.87 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe--cCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHH-HHHHHHHHhc-Ccee
Q psy12516 169 PPHNVTRVATALYKMGCYEISL--GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQAL-ANILTAMEFG-ISVF 244 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~-an~l~a~~~G-~~~v 244 (327)
......++++.+.+.|++.|.+ -+..|.+...+ .++++.+++..+ +|+.... |... .-...++..| ++.|
T Consensus 153 ~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~~~-ipvia~G----Gi~s~~di~~~~~~g~~dgv 226 (254)
T TIGR00735 153 TGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSEAVK-IPVIASG----GAGKPEHFYEAFTKGKADAA 226 (254)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHHhCC-CCEEEeC----CCCCHHHHHHHHHcCCccee
Confidence 3456778889999999999888 55555443333 346777777654 4666543 2222 2334455556 7764
Q ss_pred -eeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 245 -DSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 245 -d~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
-++.. -.|..+++++...|++.||.+
T Consensus 227 ~~g~a~----------~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 227 LAASVF----------HYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred eEhHHH----------hCCCCCHHHHHHHHHHCCCcc
Confidence 22222 135688999999999988865
No 220
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=92.40 E-value=7.9 Score=34.74 Aligned_cols=92 Identities=17% Similarity=0.306 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC-cCEEEecCCCCccC--HHHHHHHHHHHHHh
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG-CYEISLGDTIGVGT--PGTMRLMLEDVLTV 212 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g-~~~i~l~Dt~G~~~--P~~~~~~~~~~~~~ 212 (327)
+...++++.+++.|++....+. | .++.+.+..+.+.. .| +..+.+.-.+|.-+ +..+.+.++.+|+.
T Consensus 116 ee~~~~~~~~~~~g~~~i~~i~-----P---~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 116 EEAEEFREAAKEYGLDLIFLVA-----P---TTPDERIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred HHHHHHHHHHHHcCCcEEEEeC-----C---CCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 4567788999999998653222 2 13444444433321 12 22333455565433 56788899999986
Q ss_pred cCCCeEEEeecCCcCcHHH-HHHHHHHhcCce
Q psy12516 213 IPADRLAVHCHDTYGQALA-NILTAMEFGISV 243 (327)
Q Consensus 213 ~~~~~l~~H~Hn~~g~a~a-n~l~a~~~G~~~ 243 (327)
.+.|+.+ +.|.... ++-...++ +|.
T Consensus 186 -~~~pI~v----ggGI~~~e~~~~~~~~-ADg 211 (242)
T cd04724 186 -TDLPIAV----GFGISTPEQAAEVAKY-ADG 211 (242)
T ss_pred -CCCcEEE----EccCCCHHHHHHHHcc-CCE
Confidence 3456666 3355534 55555555 554
No 221
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=92.39 E-value=9.9 Score=35.85 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=96.3
Q ss_pred cccCcchhhh-hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 105 MQCGVKEIAV-FASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 105 ~~~Gid~i~l-~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
.+.|+|...- +....+.+.+..-..+. +.-.++++.+++.|+++..-...-.| =+.++-.+....+.+.
T Consensus 151 ~~aGvd~ynhNLeTs~~~y~~I~tt~t~----edR~~tl~~vk~~Gi~vcsGgI~GlG------Es~eDri~~l~~L~~l 220 (335)
T COG0502 151 ADAGVDRYNHNLETSPEFYENIITTRTY----EDRLNTLENVREAGIEVCSGGIVGLG------ETVEDRAELLLELANL 220 (335)
T ss_pred HHcChhheecccccCHHHHcccCCCCCH----HHHHHHHHHHHHcCCccccceEecCC------CCHHHHHHHHHHHHhC
Confidence 3445554432 22333445555555554 44566788999999998643322122 2456666777778877
Q ss_pred C-cCEEEe------cCC----CCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCC
Q psy12516 184 G-CYEISL------GDT----IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 184 g-~~~i~l------~Dt----~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G 252 (327)
. ++.|-| ++| .-.++|.+.-+.|+..|-.+|...|-+- =..-.+.-...--++.+|++-|=++. .+.
T Consensus 221 ~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s-~gr~~~~~~~q~~~~~aGansi~~g~-~~l 298 (335)
T COG0502 221 PTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLS-AGRETMLPELQALAFMAGANSIFVGD-KYL 298 (335)
T ss_pred CCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEcc-CCcccccHHHHHHHHHhccceeeecc-eEe
Confidence 7 776543 122 2346678888899999988897544432 12223444456677889998765544 122
Q ss_pred CCCCCCCCCCCccHHHHHHHHHhCCCCCCC
Q psy12516 253 GCPYARGASGNVATEDLVYMLEGMGIETGA 282 (327)
Q Consensus 253 ~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~ 282 (327)
-+.|.+.|+-...++.+|.....
T Consensus 299 -------tt~~~~~e~D~~~l~~lgl~~e~ 321 (335)
T COG0502 299 -------TTPGPDEDKDLELLKDLGLEPEL 321 (335)
T ss_pred -------ecCCCCchhHHHHHHHcCCCccc
Confidence 23458888989999988876544
No 222
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=92.37 E-value=5.1 Score=39.46 Aligned_cols=129 Identities=9% Similarity=0.070 Sum_probs=73.5
Q ss_pred CcCEEEecCCc-cccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
.++.|+|.+=+ -.++|.++.++++.+++.+|- .++.+-++-+. . ....+.++ ++|+.+|..++.-+..
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~-~-t~e~l~~l~~aGvnRiSiGVQSf~d----- 186 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRING-F-DDEKADAALDAGANRFSIGVQSFNT----- 186 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCc-C-CHHHHHHHHHcCCCEEEecCCcCCH-----
Confidence 36788887655 667899999999999998862 34444332111 1 12233333 5777777755543321
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC-CeEEEEEeeeccCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG-IRVRGYISCVVGCPY 164 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G-i~v~~~l~~~~g~~~ 164 (327)
++...+. . ..+ .+.+.+.++.+++.| ..+.+.+ ++|-|.
T Consensus 187 ---------~vLk~lg---R----------------------~~~----~~~~~~~i~~l~~~g~~~v~~Dl--I~GlPg 226 (449)
T PRK09058 187 ---------QVRRRAG---R----------------------KDD----REEVLARLEELVARDRAAVVCDL--IFGLPG 226 (449)
T ss_pred ---------HHHHHhC---C----------------------CCC----HHHHHHHHHHHHhCCCCcEEEEE--EeeCCC
Confidence 1111111 0 001 234555677777777 4455444 355554
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEE
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~ 189 (327)
. +.+.+.+-.+.+.+.+++.|.
T Consensus 227 q---T~e~~~~~l~~~~~l~~~~is 248 (449)
T PRK09058 227 Q---TPEIWQQDLAIVRDLGLDGVD 248 (449)
T ss_pred C---CHHHHHHHHHHHHhcCCCEEE
Confidence 2 566777777788888877554
No 223
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=92.37 E-value=2.6 Score=38.71 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
++.|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+...+ +++-+|. +++..-++..+..|.++|
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 93 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVG 93 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999 57888888888888877644 6777776 356677888889999999
Q ss_pred Cceeeecc
Q psy12516 241 ISVFDSSI 248 (327)
Q Consensus 241 ~~~vd~s~ 248 (327)
++.|=..-
T Consensus 94 ad~v~v~p 101 (285)
T TIGR00674 94 ADGFLVVT 101 (285)
T ss_pred CCEEEEcC
Confidence 99876543
No 224
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=92.35 E-value=7.4 Score=34.27 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=68.9
Q ss_pred HcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccC---HHHHHHHHHHHHHhcCCCeEEEeec
Q psy12516 147 TNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGT---PGTMRLMLEDVLTVIPADRLAVHCH 223 (327)
Q Consensus 147 ~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~---P~~~~~~~~~~~~~~~~~~l~~H~H 223 (327)
..+.++...+.+ |.. ..+.+.-..-++.+.+.|+|.|-+.=-.|.+. -..+.+.++.+++...+.++-+ ..
T Consensus 51 ~~~v~v~tVigF----P~G-~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKv-Il 124 (211)
T TIGR00126 51 GTEVRICTVVGF----PLG-ASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKV-II 124 (211)
T ss_pred CCCCeEEEEeCC----CCC-CCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEE-EE
Confidence 456777665554 443 34444444556778889999988887788544 4667777777777655444433 11
Q ss_pred CCcCc----HHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 224 DTYGQ----ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 224 n~~g~----a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
.+--+ =.-.+..++++|+|+|-+|-+ .+ .+.++.|++-.+.+
T Consensus 125 E~~~L~~~ei~~a~~ia~eaGADfvKTsTG-f~--------~~gat~~dv~~m~~ 170 (211)
T TIGR00126 125 ETGLLTDEEIRKACEICIDAGADFVKTSTG-FG--------AGGATVEDVRLMRN 170 (211)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCEEEeCCC-CC--------CCCCCHHHHHHHHH
Confidence 11112 134566788999999998743 22 23467776554444
No 225
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=92.29 E-value=6.7 Score=38.39 Aligned_cols=53 Identities=9% Similarity=-0.016 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCeE-EEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecC
Q psy12516 135 LERFSEVVSTALTNGIRV-RGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGD 192 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v-~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~D 192 (327)
.+.+.+.++.+++.|+.+ .+.+ ++|-|. -+.+.+.+..+.+.+.+++.|.+-.
T Consensus 176 ~~~~~~ai~~l~~~g~~~i~~dl--I~GlP~---qt~e~~~~~l~~~~~l~~~~is~y~ 229 (430)
T PRK08208 176 RADVHQALEWIRAAGFPILNIDL--IYGIPG---QTHASWMESLDQALVYRPEELFLYP 229 (430)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEe--ecCCCC---CCHHHHHHHHHHHHhCCCCEEEEcc
Confidence 445677788889999874 3333 455554 4778888888999999988666543
No 226
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.29 E-value=4.9 Score=36.85 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHHcCcCEEEec----CCCC----ccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC--cHHHHHHHHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLG----DTIG----VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG--QALANILTAM 237 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~----Dt~G----~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g--~a~an~l~a~ 237 (327)
.+++.+.+.++.+.+.|+|.|.|- .+.+ .-.|..+.++++.+++.. +.||.+-.--... -...-+..+.
T Consensus 108 ~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~ 186 (289)
T cd02810 108 SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAE 186 (289)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 367899999999999999977662 1111 236889999999999876 4567765443333 2344455567
Q ss_pred HhcCceeeec
Q psy12516 238 EFGISVFDSS 247 (327)
Q Consensus 238 ~~G~~~vd~s 247 (327)
++|++.|.++
T Consensus 187 ~~Gad~i~~~ 196 (289)
T cd02810 187 RAGADGLTAI 196 (289)
T ss_pred HcCCCEEEEE
Confidence 8999998764
No 227
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.22 E-value=3.6 Score=38.81 Aligned_cols=79 Identities=13% Similarity=0.028 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHHcCcCEEEe---c-----CCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHh
Q psy12516 168 VPPHNVTRVATALYKMGCYEISL---G-----DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF 239 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l---~-----Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~ 239 (327)
.+.+++.++++.+.++|+|.|.| + +..|...+..+.++++.+++... +||.+-.--+......-+..+.++
T Consensus 111 ~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~-iPV~vKl~p~~~~~~~~a~~l~~~ 189 (334)
T PRK07565 111 SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS-IPVAVKLSPYFSNLANMAKRLDAA 189 (334)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC-CcEEEEeCCCchhHHHHHHHHHHc
Confidence 45678889999999999998877 2 33344445668888999998764 577776544333233444556689
Q ss_pred cCceeeec
Q psy12516 240 GISVFDSS 247 (327)
Q Consensus 240 G~~~vd~s 247 (327)
|++.|..+
T Consensus 190 G~dgI~~~ 197 (334)
T PRK07565 190 GADGLVLF 197 (334)
T ss_pred CCCeEEEE
Confidence 99987653
No 228
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=92.20 E-value=6 Score=38.04 Aligned_cols=131 Identities=13% Similarity=0.077 Sum_probs=75.3
Q ss_pred CcCEEEecCCc-cccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
.++.|++.+-+ -.++|.++.++++.+++.+|- .++.+.++-+. -....++++ ++|+.+|..++.-+..
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~--i~~e~L~~l~~~GvnrislGvQS~~d----- 127 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTS--VEAGRFRGYRAAGVNRVSLGVQALND----- 127 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCc--CCHHHHHHHHHcCCCEEEEecccCCH-----
Confidence 47799998755 667789999999999998763 24444443222 122445555 5788887766654332
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE 165 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~ 165 (327)
+++..+.+ +-+ .+.+.+.++.+++.+..+.+.++ +|-|.
T Consensus 128 ---------~vL~~l~R-------------------------~~~----~~~~~~ai~~~~~~~~~v~~dli--~GlPg- 166 (380)
T PRK09057 128 ---------ADLRFLGR-------------------------LHS----VAEALAAIDLAREIFPRVSFDLI--YARPG- 166 (380)
T ss_pred ---------HHHHHcCC-------------------------CCC----HHHHHHHHHHHHHhCccEEEEee--cCCCC-
Confidence 12111110 011 23344556666666666655444 45453
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
-+.+.+.+-.+.+.+.+++.|.+-
T Consensus 167 --qt~~~~~~~l~~~~~l~p~~is~y 190 (380)
T PRK09057 167 --QTLAAWRAELKEALSLAADHLSLY 190 (380)
T ss_pred --CCHHHHHHHHHHHHhcCCCeEEee
Confidence 345556666677777777755544
No 229
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=92.20 E-value=8.9 Score=34.86 Aligned_cols=219 Identities=15% Similarity=0.095 Sum_probs=103.7
Q ss_pred CeeEEEecCcc-chHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 43 DRLAVHCHDTY-GQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 43 ~~~~~H~h~~~-g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
+++|+-=|... +..+...++.+ ++|.+.||..+...+..+ ...+...++ +..+++...+.|+....+....
T Consensus 8 ~~~~~~~~~~~~~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~----~~~~~~~~~-~~~l~~~l~~~gl~i~~~~~~~-- 80 (283)
T PRK13209 8 IPLGIYEKALPAGECWLEKLAIAKTAGFDFVEMSVDESDERL----ARLDWSREQ-RLALVNALVETGFRVNSMCLSA-- 80 (283)
T ss_pred ccceeecccCCCCCCHHHHHHHHHHcCCCeEEEecCccccch----hccCCCHHH-HHHHHHHHHHcCCceeEEeccc--
Confidence 55666444442 44556565555 899999998765433211 001112222 2333444444554432211000
Q ss_pred HHHHHhhcC----ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCC-CCCCC-------hHHHHHHHHHHHHcCcCEE
Q psy12516 121 MFSKRNINC----TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY-EGAVP-------PHNVTRVATALYKMGCYEI 188 (327)
Q Consensus 121 ~~~~~~l~~----s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~-~~r~~-------~e~l~~~~~~~~~~g~~~i 188 (327)
+....+.. .+++.++.+++.++.|++.|...... . +.+. ..... .+.+.++++.+.+.|+. |
T Consensus 81 -~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~---~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~-i 154 (283)
T PRK13209 81 -HRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQL-A---GYDVYYEQANNETRRRFIDGLKESVELASRASVT-L 154 (283)
T ss_pred -ccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-C---CccccccccHHHHHHHHHHHHHHHHHHHHHhCCE-E
Confidence 00000111 12345788999999999999985431 1 1110 01111 23455566666677874 2
Q ss_pred Ee--cCCCCccCHHHHHHHHHHHHHhcCCCeEEE---eecCCcCcHHHHHHHHHHhcCc---eeeeccccCCC-CCCCCC
Q psy12516 189 SL--GDTIGVGTPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAMEFGIS---VFDSSIAGLGG-CPYARG 259 (327)
Q Consensus 189 ~l--~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~g~a~an~l~a~~~G~~---~vd~s~~G~G~-~p~~~g 259 (327)
.+ -...-..++.++.+++..+.. |.+.+.+ |.+- .+... ..+++...+ +|+..=.--|. ....+|
T Consensus 155 ~iE~~~~~~~~~~~~~~~ll~~v~~--~~lgl~~D~~h~~~-~~~~~---~~~i~~~~~~i~~vHikD~~~~~~~~~~~G 228 (283)
T PRK13209 155 AFEIMDTPFMNSISKALGYAHYLNS--PWFQLYPDIGNLSA-WDNDV---QMELQAGIGHIVAFHVKDTKPGVFKNVPFG 228 (283)
T ss_pred EEeecCCcccCCHHHHHHHHHHhCC--CccceEeccchHHH-hcCCH---HHHHHhCcCcEEEEEeccCCCCCCceeCCC
Confidence 33 222333466666666655431 3222222 2221 11111 223333322 34333111111 012224
Q ss_pred CCCCccHHHHHHHHHhCCCCCC
Q psy12516 260 ASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
.|..+...++..|++.||+..
T Consensus 229 -~G~id~~~i~~~L~~~gy~g~ 249 (283)
T PRK13209 229 -EGVVDFERCFKTLKQSGYCGP 249 (283)
T ss_pred -CCccCHHHHHHHHHHcCCCce
Confidence 689999999999999887643
No 230
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=92.12 E-value=3 Score=39.86 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=47.5
Q ss_pred HcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc
Q psy12516 9 KMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 9 ~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
.-|.|.++=.=.-++.+|+++.+++..+++..|..+|++-.--..+....... +.++|+|.|- +.|-++ .+
T Consensus 170 ~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~It--IDG~~G------GT 240 (368)
T PF01645_consen 170 PPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADFIT--IDGAEG------GT 240 (368)
T ss_dssp -TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SEEE--EE-TT---------
T ss_pred CCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCEEE--EeCCCC------CC
Confidence 34677777777778999999999999999999889999988766655443333 6789999865 555555 55
Q ss_pred CCCcHH
Q psy12516 89 GNVATE 94 (327)
Q Consensus 89 gn~~~e 94 (327)
|-.+..
T Consensus 241 GAap~~ 246 (368)
T PF01645_consen 241 GAAPLT 246 (368)
T ss_dssp SSEECC
T ss_pred CCCchh
Confidence 655533
No 231
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=92.10 E-value=7.6 Score=33.90 Aligned_cols=169 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHcCcCEEEecC--CccccCHHHHHHHHHHHHhhcCCCeeEEEecCccc----------hHHHHHHHHHHcCCcEE
Q psy12516 4 ASALYKMGCYEISLGD--TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG----------QALANILTAMEFGISVF 71 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~D--t~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g----------~~~~~~~~a~~aG~~~i 71 (327)
+..+.+.|+|+|.||+ ..|-.||.. .+++.+++... +|+..-.-...| .=...+..+.++|++-|
T Consensus 13 a~~A~~~GAdRiELc~~l~~GGlTPS~--g~i~~~~~~~~-ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 89 (201)
T PF03932_consen 13 ALAAEAGGADRIELCSNLEVGGLTPSL--GLIRQAREAVD-IPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGF 89 (201)
T ss_dssp HHHHHHTT-SEEEEEBTGGGT-B---H--HHHHHHHHHTT-SEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHcCCCEEEECCCccCCCcCcCH--HHHHHHHhhcC-CceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCee
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR 151 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~ 151 (327)
= ++.|. ..|..+ .+.++++++.++ |.+
T Consensus 90 V--fG~L~-------~dg~iD------------------------------------------~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 90 V--FGALT-------EDGEID------------------------------------------EEALEELIEAAG--GMP 116 (201)
T ss_dssp E--E--BE-------TTSSB-------------------------------------------HHHHHHHHHHHT--TSE
T ss_pred E--EEeEC-------CCCCcC------------------------------------------HHHHHHHHHhcC--CCe
Q ss_pred EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCH-----HHHHHHHHHHHHhcCCCeEEEeecCCc
Q psy12516 152 VRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTP-----GTMRLMLEDVLTVIPADRLAVHCHDTY 226 (327)
Q Consensus 152 v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P-----~~~~~~~~~~~~~~~~~~l~~H~Hn~~ 226 (327)
+. |.--++.-.+ ..+..+++.++|+++|. |+|...+ +.+.+++...+..+. +-.+-
T Consensus 117 ~t------FHRAfD~~~d---~~~al~~L~~lG~~rVL---TSGg~~~a~~g~~~L~~lv~~a~~~i~-Im~Gg------ 177 (201)
T PF03932_consen 117 VT------FHRAFDEVPD---PEEALEQLIELGFDRVL---TSGGAPTALEGIENLKELVEQAKGRIE-IMPGG------ 177 (201)
T ss_dssp EE------E-GGGGGSST---HHHHHHHHHHHT-SEEE---ESTTSSSTTTCHHHHHHHHHHHTTSSE-EEEES------
T ss_pred EE------EeCcHHHhCC---HHHHHHHHHhcCCCEEE---CCCCCCCHHHHHHHHHHHHHHcCCCcE-EEecC------
Q ss_pred CcHHHHHHHHHH-hcCceeeec
Q psy12516 227 GQALANILTAME-FGISVFDSS 247 (327)
Q Consensus 227 g~a~an~l~a~~-~G~~~vd~s 247 (327)
|.-..|.-.-++ .|+.+|+.|
T Consensus 178 Gv~~~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 178 GVRAENVPELVEETGVREIHGS 199 (201)
T ss_dssp S--TTTHHHHHHHHT-SEEEET
T ss_pred CCCHHHHHHHHHhhCCeEEeec
No 232
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=92.04 E-value=9 Score=34.97 Aligned_cols=156 Identities=18% Similarity=0.254 Sum_probs=83.0
Q ss_pred HHHHHHcCcCEEEecCCcc----------ccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEe
Q psy12516 4 ASALYKMGCYEISLGDTIG----------VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 73 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt~G----------~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~ 73 (327)
++.+.++|+|.|...|+.+ ..+..++-..++.+.+..+.-. -..|.
T Consensus 28 Arl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~------------------------vvaD~ 83 (264)
T PRK00311 28 AKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRAL------------------------VVADM 83 (264)
T ss_pred HHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCc------------------------EEEeC
Confidence 5667889999999888753 4566666666677666654111 12332
Q ss_pred cccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEE
Q psy12516 74 SIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVR 153 (327)
Q Consensus 74 ~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~ 153 (327)
-+++.+ .+.++.+....+...+.|++-+.+-+. +...+.++.+.+.|+.|.
T Consensus 84 pfg~y~-----------~~~~~av~~a~r~~~~aGa~aVkiEdg------------------~~~~~~I~al~~agIpV~ 134 (264)
T PRK00311 84 PFGSYQ-----------ASPEQALRNAGRLMKEAGAHAVKLEGG------------------EEVAETIKRLVERGIPVM 134 (264)
T ss_pred CCCCcc-----------CCHHHHHHHHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHCCCCEe
Confidence 112221 233443333333333356665554432 123345666667788776
Q ss_pred EEEeee------cc-CCCCCCCC--hHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 154 GYISCV------VG-CPYEGAVP--PHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 154 ~~l~~~------~g-~~~~~r~~--~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.+... ++ .-..+|.+ .+.+.+-++.+.++|++.|.+.-. |. ++.+.+.+.++-+.|++
T Consensus 135 gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v-----~~---~~~~~i~~~l~iP~igi 202 (264)
T PRK00311 135 GHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV-----PA---ELAKEITEALSIPTIGI 202 (264)
T ss_pred eeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC-----CH---HHHHHHHHhCCCCEEEe
Confidence 444321 00 00012332 346777788888999999987432 43 34555555554333444
No 233
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=92.03 E-value=4.5 Score=38.44 Aligned_cols=147 Identities=17% Similarity=0.197 Sum_probs=78.8
Q ss_pred HHHHHHHHcCcCEEEecCC-ccccCHHHH--------HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDT-IGVGTPGTM--------RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt-~G~~~p~~~--------~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++..+++|+|.|.+-|+ +|..++... .++++.+++..+.. --+|+=-+.+. .+..| +.|++.+
T Consensus 193 ~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~-pii~f~~ga~~----~l~~m~~~g~d~l 267 (352)
T COG0407 193 EYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGV-PVIHFCKGAGH----LLEDMAKTGFDVL 267 (352)
T ss_pred HHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCCC-cEEEECCCcHH----HHHHHHhcCCcEE
Confidence 5678889999999999999 888887663 44445555444332 23444333332 33333 5665554
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhhh-hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEGK-SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~-~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
- +-+ + .+..+....+... .+.-++|-..++ -+.++..+..+++++...+...
T Consensus 268 ~-----vdw------~---v~l~~a~~~~~~~~~lqGNldP~lL~-------------~~~~~i~~~~~~iL~~~~~~~~ 320 (352)
T COG0407 268 G-----VDW------R---VDLKEAKKRLGDKVALQGNLDPALLY-------------APPEAIKEEVKRILEDGGDGSG 320 (352)
T ss_pred e-----ecc------c---cCHHHHHHHhCCCceEEeccChHhhc-------------CCHHHHHHHHHHHHHHhccCCC
Confidence 3 111 1 2233333333221 333344442222 2223334445555555444322
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCc
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGC 185 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~ 185 (327)
++ - ..||.....++++.+..+.+.+.+++.
T Consensus 321 ~I----f-nlGhGI~P~tp~e~v~~lve~v~~~~~ 350 (352)
T COG0407 321 YI----F-NLGHGILPETPPENVKALVEAVHEYSR 350 (352)
T ss_pred ce----e-cCCCCcCCCCCHHHHHHHHHHHHHhcc
Confidence 22 1 256665557889999888888877654
No 234
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=91.96 E-value=1.4 Score=40.82 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=65.8
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
++.|.+-+.++++.+.+.|++.|.+.-|+| .++.++-.+++..+++...+ ++|-+|.=.+..-++..+..|.++|+
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Ga 100 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGA 100 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCC
Confidence 579999999999999999999999999999 58888888888888877644 67777764445566677778889999
Q ss_pred ceee
Q psy12516 242 SVFD 245 (327)
Q Consensus 242 ~~vd 245 (327)
+.+=
T Consensus 101 dav~ 104 (296)
T TIGR03249 101 DGYL 104 (296)
T ss_pred CEEE
Confidence 9873
No 235
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=91.94 E-value=8.4 Score=34.14 Aligned_cols=184 Identities=13% Similarity=0.112 Sum_probs=108.2
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHc-CCcEEEeccc-CCCCCCCCCCccCCCcHHHHHHH
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF-GISVFDSSIA-GLGGCPYARGASGNVATEDLVYM 99 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~a-G~~~id~~~~-glg~~p~~~~~~gn~~~e~v~~~ 99 (327)
.-.|+.++..+...-++ .+|..-+-+=..+.-+..+++- ....+-+.++ ++| +.+++ +-.+
T Consensus 19 ~~~T~~~I~~l~~eA~~------~~f~avCV~P~~V~~A~~~l~g~~~~~v~tVigFP~G----------~~~t~-~K~~ 81 (228)
T COG0274 19 PDATEEDIARLCAEAKE------YGFAAVCVNPSYVPLAKEALKGSTVVRVCTVIGFPLG----------ANTTA-VKAA 81 (228)
T ss_pred CCCCHHHHHHHHHHHHh------hCceEEEECcchHHHHHHHhccCCCeEEEEecCCCCC----------CChHH-HHHH
Confidence 44577777777766554 3466666666667777777753 4445666665 444 34443 2122
Q ss_pred hhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHH
Q psy12516 100 LEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATA 179 (327)
Q Consensus 100 l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~ 179 (327)
-.+.+++.|.|.+.+..+.... .....+...+.++.+++.+... ..+.+.+... ..+.+.....++.
T Consensus 82 Ea~~ai~~GAdEiDmVinig~~-----k~g~~~~V~~eI~~v~~a~~~~-~~lKVIlEt~-------~Lt~ee~~~A~~i 148 (228)
T COG0274 82 EAREAIENGADEIDMVINIGAL-----KSGNWEAVEREIRAVVEACADA-VVLKVILETG-------LLTDEEKRKACEI 148 (228)
T ss_pred HHHHHHHcCCCeeeeeeeHHHH-----hcCCHHHHHHHHHHHHHHhCCC-ceEEEEEecc-------ccCHHHHHHHHHH
Confidence 2346788888887766444321 1223344566677777777655 4555555542 4677888999999
Q ss_pred HHHcCcCEEEecCCC----CccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCcee
Q psy12516 180 LYKMGCYEISLGDTI----GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVF 244 (327)
Q Consensus 180 ~~~~g~~~i~l~Dt~----G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~v 244 (327)
+.++|+|-| +-++ |-.|++++.-+.+.+.. ++++-.-- |-- ...++..+++|+.+|
T Consensus 149 ~~~aGAdFV--KTSTGf~~~gAT~edv~lM~~~vg~-----~vgvKaSG--GIrt~eda~~~i~aga~Ri 209 (228)
T COG0274 149 AIEAGADFV--KTSTGFSAGGATVEDVKLMKETVGG-----RVGVKASG--GIRTAEDAKAMIEAGATRI 209 (228)
T ss_pred HHHhCCCEE--EcCCCCCCCCCCHHHHHHHHHHhcc-----CceeeccC--CcCCHHHHHHHHHHhHHHh
Confidence 999999965 3444 45778877666555532 34443221 111 244566677786644
No 236
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=91.84 E-value=1.6 Score=39.94 Aligned_cols=65 Identities=18% Similarity=0.115 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
..-++.+.++|+|.| |-+-.++| ..+++...|+++ ++++-.=+-| +..++.+++.|++.|-+++.
T Consensus 79 ~~Ea~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfmad~~~-----l~EAlrai~~GadmI~Tt~e 143 (287)
T TIGR00343 79 FVEAQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFVCGARD-----LGEALRRINEGAAMIRTKGE 143 (287)
T ss_pred HHHHHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCEEecccc
Confidence 344678889999998 88889999 578888899888 5566652222 57889999999999999987
No 237
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=91.81 E-value=1 Score=40.09 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHH--HHHHHHHHHhcCCCeEEEeec-CCcCcHHHHHHHHHHhcCcee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCH-DTYGQALANILTAMEFGISVF 244 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~--~~~~~~~~~~~~~~~l~~H~H-n~~g~a~an~l~a~~~G~~~v 244 (327)
.++..+.+..+++.+.|+|.+-+==+-|...|.-. .+.++.+|+..|+.++.+|.| ++.... .-.+.++|++++
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~---i~~~~~~Gad~i 92 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKW---VDDFAKAGASQF 92 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHH---HHHHHHcCCCEE
Confidence 46667778888888888886554444477666521 246778887777788899999 332222 145567788876
Q ss_pred eeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 245 DSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 245 d~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
. +. +| ++.-.++..+..+++.|...+
T Consensus 93 t--vH--~e-------a~~~~~~~~l~~ik~~G~~~g 118 (228)
T PTZ00170 93 T--FH--IE-------ATEDDPKAVARKIREAGMKVG 118 (228)
T ss_pred E--Ee--cc-------CCchHHHHHHHHHHHCCCeEE
Confidence 3 33 22 122225666666666554443
No 238
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=91.81 E-value=3.5 Score=37.96 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=9.2
Q ss_pred CCCccHHHHHHHHHh
Q psy12516 261 SGNVATEDLVYMLEG 275 (327)
Q Consensus 261 ~Gn~~~e~~~~~l~~ 275 (327)
.+|.-.|.++...+.
T Consensus 207 ~~n~~P~~~~~l~~~ 221 (288)
T cd00954 207 TYNVNGKRYRKIFEA 221 (288)
T ss_pred hhhhCHHHHHHHHHH
Confidence 456666776666654
No 239
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.72 E-value=5 Score=37.71 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHHcCcCEEEe---c-----CCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHh
Q psy12516 168 VPPHNVTRVATALYKMGCYEISL---G-----DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF 239 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l---~-----Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~ 239 (327)
.+++.+.++++.+.++|+|.|.| + +-.|...++.+.++++.+++... +||.+-.--+......-+.++.++
T Consensus 109 ~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~-iPv~vKl~p~~~~~~~~a~~l~~~ 187 (325)
T cd04739 109 VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT-IPVAVKLSPFFSALAHMAKQLDAA 187 (325)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC-CCEEEEcCCCccCHHHHHHHHHHc
Confidence 46788899999999999996654 1 22333445677889999998764 577776654555455566667788
Q ss_pred cCceeee
Q psy12516 240 GISVFDS 246 (327)
Q Consensus 240 G~~~vd~ 246 (327)
|++.|..
T Consensus 188 Gadgi~~ 194 (325)
T cd04739 188 GADGLVL 194 (325)
T ss_pred CCCeEEE
Confidence 9998754
No 240
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=91.69 E-value=11 Score=35.48 Aligned_cols=39 Identities=18% Similarity=0.020 Sum_probs=28.5
Q ss_pred HHHHHHHcCcCEEEecCCcc----------ccCHHHHHHHHHHHHhhcC
Q psy12516 3 VASALYKMGCYEISLGDTIG----------VGTPGTMRLMLEDVLTVIP 41 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G----------~~~p~~~~~~~~~~~~~~~ 41 (327)
.++.+.++|+|.|.+.|+.| ..|.+++-..++.+++..+
T Consensus 47 sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~ 95 (332)
T PLN02424 47 SAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGAN 95 (332)
T ss_pred HHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCC
Confidence 35678889999999999986 3455556666666666654
No 241
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=91.69 E-value=0.74 Score=41.38 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh-cCC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV-IPA 215 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~-~~~ 215 (327)
.+++-++.++++|+.+.. ..++ ++--+....+.++.+.+.++|.+.|.+.|-+-.+.+++-.++++.+++. +.
T Consensus 55 ~l~eki~l~~~~gV~v~~--GGtl---~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~- 128 (244)
T PF02679_consen 55 ILKEKIDLAHSHGVYVYP--GGTL---FEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFK- 128 (244)
T ss_dssp HHHHHHHHHHCTT-EEEE---HHH---HHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSE-
T ss_pred HHHHHHHHHHHcCCeEeC--CcHH---HHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCE-
Confidence 367789999999998751 1111 1112235678888899999999999999999889999988999988876 32
Q ss_pred CeEEEeecC-------CcCcHHHHHHHHHHhcCcee--eec---cccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 216 DRLAVHCHD-------TYGQALANILTAMEFGISVF--DSS---IAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 216 ~~l~~H~Hn-------~~g~a~an~l~a~~~G~~~v--d~s---~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
+--++...+ |...-+......+++||+.| ++- -.|+-. ..|+...+.+-..++..+
T Consensus 129 v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~------~~g~~r~d~v~~i~~~~~ 196 (244)
T PF02679_consen 129 VLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYD------NDGEVRTDLVEKIIERLG 196 (244)
T ss_dssp EEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-------TTS-B-HHHHHHHHTTS-
T ss_pred EeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccC------CCCCccHHHHHHHHHhCC
Confidence 122232222 24566788889999999985 433 225555 679999888887776644
No 242
>PLN02428 lipoic acid synthase
Probab=91.67 E-value=11 Score=35.95 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 135 LERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 135 i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
.++..++++.+++. |+.+..+++.-+| =+.+++.+..+.+.+.|+|.+.+.
T Consensus 230 ye~~Le~L~~ak~~~pGi~tkSg~MvGLG------ET~Edv~e~l~~Lrelgvd~vtig 282 (349)
T PLN02428 230 YKQSLDVLKHAKESKPGLLTKTSIMLGLG------ETDEEVVQTMEDLRAAGVDVVTFG 282 (349)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeEEEecC------CCHHHHHHHHHHHHHcCCCEEeec
Confidence 44566778888888 9988766665433 267899999999999999998653
No 243
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=91.63 E-value=9.2 Score=33.87 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~ 211 (327)
++.++.+.++.+.+++.|+++.+.. ...|.......+.+.+...++...+.|+|.|.+.-|. .++. ++.+.+
T Consensus 105 ~~~~~~i~~v~~~~~~~g~~~iie~-~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~---~~~~----~~~i~~ 176 (235)
T cd00958 105 REMLEELARVAAEAHKYGLPLIAWM-YPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG---DAES----FKEVVE 176 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEE-eccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC---CHHH----HHHHHh
Confidence 3457788888899999999875422 1111111112345677777888889999999885332 2333 444555
Q ss_pred hcCCCeEEEeec---CCcCcHHHHHHHHHHhcCceeeec
Q psy12516 212 VIPADRLAVHCH---DTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 212 ~~~~~~l~~H~H---n~~g~a~an~l~a~~~G~~~vd~s 247 (327)
..+ +|+..=.. .|..-.+.|.-.++++|++.|-..
T Consensus 177 ~~~-~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 177 GCP-VPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred cCC-CCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 554 35543232 333446788999999999987543
No 244
>PRK05481 lipoyl synthase; Provisional
Probab=91.62 E-value=11 Score=34.78 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.+...++++.+++. |+.+...+..-|| =+.++..+..+.+.+.+.+.+.+
T Consensus 179 ~e~~le~i~~ar~~~pgi~~~t~~IvGfG------ET~ed~~~tl~~lrel~~d~v~i 230 (289)
T PRK05481 179 YERSLELLKRAKELHPGIPTKSGLMVGLG------ETDEEVLEVMDDLRAAGVDILTI 230 (289)
T ss_pred HHHHHHHHHHHHHhCCCCeEeeeeEEECC------CCHHHHHHHHHHHHhcCCCEEEE
Confidence 45567788899998 9988766554332 25688889999999999997766
No 245
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=91.58 E-value=10 Score=34.26 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=20.0
Q ss_pred CCCccHHHHHHHHHhCCCCCCCChh
Q psy12516 261 SGNVATEDLVYMLEGMGIETGADLT 285 (327)
Q Consensus 261 ~Gn~~~e~~~~~l~~~g~~~~~d~~ 285 (327)
.|+.+..+++..|++.||+--+-++
T Consensus 223 ~G~id~~~i~~~L~~~gy~g~~~lE 247 (275)
T PRK09856 223 EGKMPLRELMRDIIDRGYEGYCTVE 247 (275)
T ss_pred CCCCCHHHHHHHHHHcCCCceEEEE
Confidence 6899999999999998887444333
No 246
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=91.52 E-value=8.4 Score=36.80 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.+.+.+.++.+++.|+. +.+.+ ++|-|. -+.+.+.+..+.+.+.+++.|.+
T Consensus 134 ~~~~~~ai~~l~~~g~~~v~~dl--i~GlPg---qt~e~~~~~l~~~~~l~~~~is~ 185 (374)
T PRK05799 134 FEEFLENYKLARKLGFNNINVDL--MFGLPN---QTLEDWKETLEKVVELNPEHISC 185 (374)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEe--ecCCCC---CCHHHHHHHHHHHHhcCCCEEEE
Confidence 34566677788888875 54443 355554 36778888888888888886654
No 247
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=91.51 E-value=16 Score=36.48 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=49.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
+.++++.+.|||.|-+.=-++.-.+.++...++.+++... .++++-+.+. .-+.+|+++|++.|.
T Consensus 169 ~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~-~pISIDT~~~-----~v~eaAL~aGAdiIN 233 (499)
T TIGR00284 169 GLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALD-SPVIADTPTL-----DELYEALKAGASGVI 233 (499)
T ss_pred HHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCC-CcEEEeCCCH-----HHHHHHHHcCCCEEE
Confidence 4577888999999999866555566678888988887653 6776655544 356788899999987
No 248
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=91.40 E-value=13 Score=35.21 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=71.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhh-----cCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV-----IPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~-----~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++++.++|++.+++.= .+... ..-+..+++. .| +|+..-.|-++.+| +.|+++ ++-+-..=+
T Consensus 35 ~QI~~L~~aGceivRvav----p~~~~-a~al~~I~~~l~~~g~~-iPlVADIHFd~~lA----l~a~~~-v~kiRINPG 103 (359)
T PF04551_consen 35 AQIKRLEEAGCEIVRVAV----PDMEA-AEALKEIKKRLRALGSP-IPLVADIHFDYRLA----LEAIEA-VDKIRINPG 103 (359)
T ss_dssp HHHHHHHHCT-SEEEEEE-----SHHH-HHHHHHHHHHHHCTT-S-S-EEEEESTTCHHH----HHHHHC--SEEEE-TT
T ss_pred HHHHHHHHcCCCEEEEcC----CCHHH-HHHHHHHHHhhccCCCC-CCeeeecCCCHHHH----HHHHHH-hCeEEECCC
Confidence 467889999999766542 12333 2224444444 44 89999999898775 556777 887775555
Q ss_pred CCCCCCCCCCccC-CCcHHHHHHHhhhh--hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe
Q psy12516 77 GLGGCPYARGASG-NVATEDLVYMLEGK--SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR 151 (327)
Q Consensus 77 glg~~p~~~~~~g-n~~~e~v~~~l~~~--~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~ 151 (327)
.++. .|...... .-..++++...++. .+.-|++.=.+. .+.+.++ +-+.+-.++.+.+.++.+.+.|++
T Consensus 104 Ni~~-~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~---~~~~~ky--~~t~~amvesA~~~~~~le~~~f~ 175 (359)
T PF04551_consen 104 NIVD-EFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLE---KDILEKY--GPTPEAMVESALEHVRILEELGFD 175 (359)
T ss_dssp TSS-----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS----HHHHHHH--CHHHHHHHHHHHHHHHHHHHCT-G
T ss_pred cccc-cccccccchHHHHHHHHHHHHHCCCCEEEecccccCc---HHHHhhc--cchHHHHHHHHHHHHHHHHHCCCC
Confidence 6642 33222211 23455566665543 334455443221 1222222 455566677778888888888886
No 249
>KOG3111|consensus
Probab=91.36 E-value=1.7 Score=37.53 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE---EEecCCC-CccCHHHHHHHHHHHHH
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE---ISLGDTI-GVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~---i~l~Dt~-G~~~P~~~~~~~~~~~~ 211 (327)
+...+++++.|++|.++...+. | -++.+.+..+.+. +|- ..+.--+ |.-.-++.-..+..||+
T Consensus 99 q~~~~lv~~ir~~Gmk~G~alk-----P---gT~Ve~~~~~~~~-----~D~vLvMtVePGFGGQkFme~mm~KV~~lR~ 165 (224)
T KOG3111|consen 99 QKPAELVEKIREKGMKVGLALK-----P---GTPVEDLEPLAEH-----VDMVLVMTVEPGFGGQKFMEDMMPKVEWLRE 165 (224)
T ss_pred cCHHHHHHHHHHcCCeeeEEeC-----C---CCcHHHHHHhhcc-----ccEEEEEEecCCCchhhhHHHHHHHHHHHHH
Confidence 4467789999999999876544 2 2566666655542 231 1222222 23334556666899999
Q ss_pred hcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 212 VIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 212 ~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++|...+++ |-|....|.-.+.++||+.+=+.-.=+ |-.+-.+++..|+.
T Consensus 166 kyp~l~iev----DGGv~~~ti~~~a~AGAN~iVaGsavf----------~a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 166 KYPNLDIEV----DGGVGPSTIDKAAEAGANMIVAGSAVF----------GAADPSDVISLLRN 215 (224)
T ss_pred hCCCceEEe----cCCcCcchHHHHHHcCCCEEEecceee----------cCCCHHHHHHHHHH
Confidence 999888877 789999999999999999864433322 34566777777764
No 250
>PRK08508 biotin synthase; Provisional
Probab=91.35 E-value=1.7 Score=39.94 Aligned_cols=135 Identities=16% Similarity=0.095 Sum_probs=68.5
Q ss_pred CChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHH
Q psy12516 129 CTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLED 208 (327)
Q Consensus 129 ~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~ 208 (327)
.+++++++ .++++++.|..-...+..-++ + ...+.+++.++++.+.+.+.+ +.+.-+.|.++++.+.++...
T Consensus 40 ~s~eeI~~----~a~~a~~~g~~~~~lv~sg~~-~--~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~a 111 (279)
T PRK08508 40 KDIEQIVQ----EAKMAKANGALGFCLVTSGRG-L--DDKKLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKKA 111 (279)
T ss_pred CCHHHHHH----HHHHHHHCCCCEEEEEeccCC-C--CcccHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHHc
Confidence 46566444 345556667742211111111 1 123667888888888876543 234446788887765554332
Q ss_pred HHHhcC-CCeEE--Eeec----CCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 209 VLTVIP-ADRLA--VHCH----DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 209 ~~~~~~-~~~l~--~H~H----n~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
=...++ +.+.. ++.+ .++---+.....|-++|...-.+-+.|+|| . .-...+.+..|++.+.+
T Consensus 112 Gld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGE------t--~ed~~~~l~~lr~L~~~ 181 (279)
T PRK08508 112 GIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGE------S--WEDRISFLKSLASLSPH 181 (279)
T ss_pred CCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCC------C--HHHHHHHHHHHHcCCCC
Confidence 011111 00000 1111 111222334445678888777888888888 2 34455555566655544
No 251
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=91.23 E-value=12 Score=34.42 Aligned_cols=212 Identities=13% Similarity=0.129 Sum_probs=115.6
Q ss_pred HHHHHHcCcCEEEecCC----------ccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHH---HHHH-HcCCc
Q psy12516 4 ASALYKMGCYEISLGDT----------IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI---LTAM-EFGIS 69 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt----------~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~---~~a~-~aG~~ 69 (327)
++.+.++|.+.|++.=- .|..|..++-..++.+.+.. ++|+..-.=+-+|. ..|+ +.-+ ++|+.
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~-~lPv~vD~dtGfG~-~~nvartV~~~~~aG~a 108 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV-DLPVLVDIDTGFGE-ALNVARTVRELEQAGAA 108 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc-CCceEEeccCCCCc-HHHHHHHHHHHHHcCcc
Confidence 45567778777766432 26677777777777777766 37888888888887 3333 3333 67776
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG 149 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G 149 (327)
-+..-=.-... +.|+.+-. .+ .+.++..++++.+++..++..
T Consensus 109 gi~iEDq~~pk------~cgh~~gk------------------~l--------------~~~~e~v~rIkAa~~a~~~~~ 150 (289)
T COG2513 109 GIHIEDQVGPK------RCGHLPGK------------------EL--------------VSIDEMVDRIKAAVEARRDPD 150 (289)
T ss_pred eeeeeecccch------hcCCCCCC------------------Cc--------------CCHHHHHHHHHHHHHhccCCC
Confidence 54422111111 11221111 00 122334556555555554433
Q ss_pred CeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH
Q psy12516 150 IRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA 229 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a 229 (327)
+-+.+ =.+++. .-..+..++-++...++|+|.|.. -|+-+++++..+.+.++ .|- ++-+--+-...+-
T Consensus 151 fvi~A-RTda~~-----~~~ld~AI~Ra~AY~eAGAD~if~---~al~~~e~i~~f~~av~--~pl-~~N~t~~g~tp~~ 218 (289)
T COG2513 151 FVIIA-RTDALL-----VEGLDDAIERAQAYVEAGADAIFP---EALTDLEEIRAFAEAVP--VPL-PANITEFGKTPLL 218 (289)
T ss_pred eEEEe-ehHHHH-----hccHHHHHHHHHHHHHcCCcEEcc---ccCCCHHHHHHHHHhcC--CCe-eeEeeccCCCCCc
Confidence 32211 011111 112466667777788999999984 46666777777666665 232 2322222211222
Q ss_pred HHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 230 LANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 230 ~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
.. -.--++|+++|-..+..+ |+.+..++.++..+++.|
T Consensus 219 ~~--~~L~~~Gv~~V~~~~~~~--------raa~~a~~~~~~~i~~~g 256 (289)
T COG2513 219 TV--AELAELGVKRVSYGLTAF--------RAALKAAEQAAREIRREG 256 (289)
T ss_pred CH--HHHHhcCceEEEECcHHH--------HHHHHHHHHHHHHHHhcC
Confidence 22 233467998887644433 677888888888887766
No 252
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=91.11 E-value=0.77 Score=41.96 Aligned_cols=66 Identities=17% Similarity=0.051 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeecccc
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 250 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G 250 (327)
..-++.+.++|+|.| |-+...+| ..+++..+|+++ +.++-.=+- -+..++.|.+.|++.|-+|+.|
T Consensus 77 ~~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l~MAD~s-----tleEal~a~~~Gad~I~TTl~g 142 (283)
T cd04727 77 FVEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVPFVCGAR-----NLGEALRRISEGAAMIRTKGEA 142 (283)
T ss_pred HHHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCcEEccCC-----CHHHHHHHHHCCCCEEEecCCC
Confidence 445677889999999 77777888 688999999887 555544211 1678899999999999999983
No 253
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=91.02 E-value=14 Score=34.78 Aligned_cols=126 Identities=18% Similarity=0.136 Sum_probs=76.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
+.++++.++|++.+++.= .+. +-.+-+..+++..| +|+..-.|-++-+ ++.+++.|++-+-..=+.+|.
T Consensus 38 ~QI~~L~~aGceiVRvav----p~~-~~A~al~~I~~~~~-iPlVADIHFd~~l----Al~a~~~g~dkiRINPGNig~- 106 (346)
T TIGR00612 38 AQIRALEEAGCDIVRVTV----PDR-ESAAAFEAIKEGTN-VPLVADIHFDYRL----AALAMAKGVAKVRINPGNIGF- 106 (346)
T ss_pred HHHHHHHHcCCCEEEEcC----CCH-HHHHhHHHHHhCCC-CCEEEeeCCCcHH----HHHHHHhccCeEEECCCCCCC-
Confidence 567889999999777652 223 33445677777776 8888877777654 577889999988855555553
Q ss_pred CCCCCccCCCcHHHHHHHhhhh--hcccCcchhhhhhhhhHHHHHHhhc-CChHHHHHHHHHHHHHHHHcCCe
Q psy12516 82 PYARGASGNVATEDLVYMLEGK--SMQCGVKEIAVFASASEMFSKRNIN-CTIEESLERFSEVVSTALTNGIR 151 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~--~~~~Gid~i~l~~~~sd~~~~~~l~-~s~ee~i~~~~~~v~~a~~~Gi~ 151 (327)
.-..+.++...++. .+.-|++.= ++++. ...+.+ -+++-.++.+.+.++.+.+.|++
T Consensus 107 --------~e~v~~vv~~ak~~~ipIRIGVN~G----SL~~~-~~~kyg~~t~eamveSAl~~v~~le~~~F~ 166 (346)
T TIGR00612 107 --------RERVRDVVEKARDHGKAMRIGVNHG----SLERR-LLEKYGDATAEAMVQSALEEAAILEKLGFR 166 (346)
T ss_pred --------HHHHHHHHHHHHHCCCCEEEecCCC----CCcHH-HHHHcCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 11244455444432 233344332 22221 222334 35566677777777777777776
No 254
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=91.01 E-value=1.8 Score=40.02 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
++.|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+...+ ++|-.|. +++.--++..+..|.+.|
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~G 95 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAG 95 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcC
Confidence 589999999999999999999999999999 47778888888877776643 6777766 567777888889999999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
++.+=.
T Consensus 96 ad~v~v 101 (294)
T TIGR02313 96 ADAAMV 101 (294)
T ss_pred CCEEEE
Confidence 987654
No 255
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=90.98 E-value=4.1 Score=37.34 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=69.2
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeec-CCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCH-DTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~H-n~~g~a~an~l~a~~~G 240 (327)
++.+.+.+.+.++.+.+.|++.+.+.-|+| .++.++-.+++..+++..+ .++|-++.- ++..-++..+..|.++|
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G 95 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAG 95 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999998 5888888888888888765 467777775 46777888889999999
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
++.|=..
T Consensus 96 ~d~v~~~ 102 (284)
T cd00950 96 ADAALVV 102 (284)
T ss_pred CCEEEEc
Confidence 9987654
No 256
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=90.93 E-value=1.2 Score=38.31 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=51.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+-++.+.++|+|.|.+ |-+....|..+.++++.+++.+ ..+-.-+ . .+...+.|.++|++.|-+++.|.-+
T Consensus 55 ~ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~--~l~MADi-s----t~ee~~~A~~~G~D~I~TTLsGYT~ 125 (192)
T PF04131_consen 55 KEVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY--QLVMADI-S----TLEEAINAAELGFDIIGTTLSGYTP 125 (192)
T ss_dssp HHHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT--SEEEEE--S----SHHHHHHHHHTT-SEEE-TTTTSST
T ss_pred HHHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC--cEEeeec-C----CHHHHHHHHHcCCCEEEcccccCCC
Confidence 5578899999999987 7788888888999999999977 2222211 1 2678899999999999999998886
No 257
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=90.92 E-value=12 Score=34.00 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=41.1
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHc--CCcEEE
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF--GISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~a--G~~~id 72 (327)
+.+++..+.|+|.|-+.=-+ +--.+.++...++.+++.. +.++.+ |++- ..-+.+|+++ |.+.|.
T Consensus 29 ~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~-~~plsI---DT~~--~~v~eaaL~~~~G~~iIN 96 (261)
T PRK07535 29 KLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV-DVPLCI---DSPN--PAAIEAGLKVAKGPPLIN 96 (261)
T ss_pred HHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC-CCCEEE---eCCC--HHHHHHHHHhCCCCCEEE
Confidence 56788889999998887422 2233556777777776655 366644 4443 2344566666 888766
No 258
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=90.91 E-value=1.9 Score=39.90 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=70.2
Q ss_pred CCCChHHHHHHHHHHHH-cCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHh
Q psy12516 166 GAVPPHNVTRVATALYK-MGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEF 239 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~-~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~ 239 (327)
++.+.+-+.++++.+.+ .|++.|.+.-|+| .++.++-.++++.+++..++ +++-++. +++.--++..+..|.++
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~ 98 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATEL 98 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHc
Confidence 57999999999999999 9999999999999 48888888888888887654 6788877 67778888899999999
Q ss_pred cCceeeec
Q psy12516 240 GISVFDSS 247 (327)
Q Consensus 240 G~~~vd~s 247 (327)
|++.+=..
T Consensus 99 Gad~v~v~ 106 (293)
T PRK04147 99 GYDAISAV 106 (293)
T ss_pred CCCEEEEe
Confidence 99987654
No 259
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=90.90 E-value=4.7 Score=37.13 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=67.7
Q ss_pred CCCChHHHHHHHHHHHHc-CcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHh
Q psy12516 166 GAVPPHNVTRVATALYKM-GCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEF 239 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~-g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~ 239 (327)
+..|.+.+.++++.+.+. |++.|.+.-|+| .++.++-.++++...+...+ +++-++. +++.--++..+..|.++
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEEL 95 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHc
Confidence 478999999999999999 999999999999 47788888888888877644 6777776 56777788889999999
Q ss_pred cCceeee
Q psy12516 240 GISVFDS 246 (327)
Q Consensus 240 G~~~vd~ 246 (327)
|++.+=.
T Consensus 96 Gad~v~~ 102 (288)
T cd00954 96 GYDAISA 102 (288)
T ss_pred CCCEEEE
Confidence 9998653
No 260
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=90.89 E-value=6.4 Score=36.16 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=71.0
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...+ +..++.|++.+-+.....+. ...|.+|..+-++.+++.++ ....+.+.+. ..
T Consensus 17 g~id~~~~~~~i-~~l~~~Gv~gl~~~GstGE~-----~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~ 80 (289)
T PF00701_consen 17 GSIDEDALKRLI-DFLIEAGVDGLVVLGSTGEF-----YSLTDEERKELLEIVVEAAA-GRVPVIAGVG---------AN 80 (289)
T ss_dssp SSB-HHHHHHHH-HHHHHTTSSEEEESSTTTTG-----GGS-HHHHHHHHHHHHHHHT-TSSEEEEEEE---------SS
T ss_pred cCcCHHHHHHHH-HHHHHcCCCEEEECCCCccc-----ccCCHHHHHHHHHHHHHHcc-CceEEEecCc---------ch
Confidence 556655554443 33457788887777666653 34555564444444455443 2344433222 25
Q ss_pred ChHHHHHHHHHHHHcCcCEEE-ecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeec
Q psy12516 169 PPHNVTRVATALYKMGCYEIS-LGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~-l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~H 223 (327)
+.+...++++.+.+.|+|.+. ++-.....+++++.+.++.+.+. .+.|+.++-+
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~-~~~pi~iYn~ 135 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADA-TDLPIIIYNN 135 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHH-SSSEEEEEEB
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhh-cCCCEEEEEC
Confidence 678888888888899988664 44556667888888888888855 4456666444
No 261
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=90.72 E-value=15 Score=34.53 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=49.0
Q ss_pred HHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCC-eeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCC
Q psy12516 3 VASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGG 80 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~-~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~ 80 (327)
+++.+.+.|+..|.|..---.+.| ++.++++.+++. +.. .+.+.+ .|.-+...+..+ ++|++.|.+++.++.+
T Consensus 51 ~i~~~~~~gv~~V~ltGGEPll~~-~l~~li~~i~~~-~gi~~v~itT---NG~ll~~~~~~L~~~gl~~v~ISld~~~~ 125 (334)
T TIGR02666 51 LVRAFVGLGVRKVRLTGGEPLLRK-DLVELVARLAAL-PGIEDIALTT---NGLLLARHAKDLKEAGLKRVNVSLDSLDP 125 (334)
T ss_pred HHHHHHHCCCCEEEEECccccccC-CHHHHHHHHHhc-CCCCeEEEEe---CchhHHHHHHHHHHcCCCeEEEecccCCH
Confidence 455666778888887542122222 355556655442 223 344433 455555555555 6788888888877664
Q ss_pred CCCCCCccCCCcHHHHHHHh
Q psy12516 81 CPYARGASGNVATEDLVYML 100 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l 100 (327)
.-|.....+....+.++..+
T Consensus 126 ~~~~~i~~~~~~~~~vl~~i 145 (334)
T TIGR02666 126 ERFAKITRRGGRLEQVLAGI 145 (334)
T ss_pred HHhheeCCCCCCHHHHHHHH
Confidence 33332221233445554443
No 262
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=90.69 E-value=12 Score=33.67 Aligned_cols=182 Identities=17% Similarity=0.199 Sum_probs=100.3
Q ss_pred HHHHHHHcCcCEEEecCCc--cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 3 VASALYKMGCYEISLGDTI--GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~--G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
-+..+.+.|+|+|.||+.. |-.||.. .+++.+++... +| +-+-++.-++
T Consensus 13 ~a~~A~~~GAdRiELc~~L~~GGlTPS~--g~i~~~~~~~~-ip--------------------------v~vMIRPR~g 63 (248)
T PRK11572 13 CALTAQQAGADRIELCAAPKEGGLTPSL--GVLKSVRERVT-IP--------------------------VHPIIRPRGG 63 (248)
T ss_pred HHHHHHHcCCCEEEEccCcCCCCcCCCH--HHHHHHHHhcC-CC--------------------------eEEEEecCCC
Confidence 4567889999999999966 8888875 33444444331 22 2233443332
Q ss_pred CCCCCCccCCCcHHHHHHHhh--hhhcccCcchhhh--hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy12516 81 CPYARGASGNVATEDLVYMLE--GKSMQCGVKEIAV--FASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYI 156 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~--~~~~~~Gid~i~l--~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l 156 (327)
.| --+.+++-.+.. +...+.|.|.+-+ +.+... .+ .+.++++++.++ |+++. +
T Consensus 64 -dF------~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~--------vD----~~~~~~Li~~a~--~~~vT--F 120 (248)
T PRK11572 64 -DF------CYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGH--------VD----MPRMRKIMAAAG--PLAVT--F 120 (248)
T ss_pred -CC------CCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCC--------cC----HHHHHHHHHHhc--CCceE--E
Confidence 01 112233322222 2455667775532 211111 11 456777777774 55553 2
Q ss_pred eeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc-cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHH
Q psy12516 157 SCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV-GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 235 (327)
Q Consensus 157 ~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~ 235 (327)
-.+| +. . + ...+..+.+.++|+++|- |+|. .+..+-.+.++.+.+...+..|-. =-|.-..|.-.
T Consensus 121 HRAf----D~-~-~-d~~~al~~l~~lG~~rIL---TSGg~~~a~~g~~~L~~lv~~a~~~~Im~----GgGV~~~Nv~~ 186 (248)
T PRK11572 121 HRAF----DM-C-A-NPLNALKQLADLGVARIL---TSGQQQDAEQGLSLIMELIAASDGPIIMA----GAGVRLSNLHK 186 (248)
T ss_pred echh----hc-c-C-CHHHHHHHHHHcCCCEEE---CCCCCCCHHHHHHHHHHHHHhcCCCEEEe----CCCCCHHHHHH
Confidence 2333 21 1 1 234678889999999986 6665 445555566666666554422211 12555677766
Q ss_pred HHHhcCceeeecccc
Q psy12516 236 AMEFGISVFDSSIAG 250 (327)
Q Consensus 236 a~~~G~~~vd~s~~G 250 (327)
-.+.|++.|+.|-..
T Consensus 187 l~~tG~~~~H~s~~~ 201 (248)
T PRK11572 187 FLDAGVREVHSSAGQ 201 (248)
T ss_pred HHHcCCCEEeeCCCc
Confidence 668999999987653
No 263
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=90.60 E-value=7.7 Score=37.87 Aligned_cols=130 Identities=17% Similarity=0.243 Sum_probs=83.2
Q ss_pred cCEEEecCCc-cccCHHHHHHHHHHHHhhcC--C--CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 12 CYEISLGDTI-GVGTPGTMRLMLEDVLTVIP--A--DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 12 ~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~--~--~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
++.|.+.=-+ -.++|.++..++..+++.++ + .++.+-+ +.+.--..-..++ ++|+.+|..++..+..
T Consensus 88 v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~--nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~----- 160 (416)
T COG0635 88 VKTIYFGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEA--NPGTVEAEKFKALKEAGVNRISLGVQSFND----- 160 (416)
T ss_pred EEEEEECCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEe--CCCCCCHHHHHHHHHcCCCEEEeccccCCH-----
Confidence 4456665433 67889999999999999883 2 4555555 5655555556666 6888888877776653
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE 165 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~ 165 (327)
++...+. +++ ..+....++..+++.|+.- +++-.++|-|.
T Consensus 161 ---------~~lk~lg---------R~h--------------------~~~~~~~a~~~~~~~g~~~-in~DLIyglP~- 200 (416)
T COG0635 161 ---------EVLKALG---------RIH--------------------DEEEAKEAVELARKAGFTS-INIDLIYGLPG- 200 (416)
T ss_pred ---------HHHHHhc---------CCC--------------------CHHHHHHHHHHHHHcCCCc-EEEEeecCCCC-
Confidence 2222111 110 1344666778888888762 23444456564
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+-.++++++++|+|.+
T Consensus 201 --QT~~~~~~~l~~a~~l~pdhis~ 223 (416)
T COG0635 201 --QTLESLKEDLEQALELGPDHLSL 223 (416)
T ss_pred --CCHHHHHHHHHHHHhCCCCEEEE
Confidence 36778888888899999886654
No 264
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=90.47 E-value=3 Score=36.13 Aligned_cols=100 Identities=10% Similarity=0.049 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecC-CcCcHHHHHHHHHHhcCceee
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD-TYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn-~~g~a~an~l~a~~~G~~~vd 245 (327)
..+.+...++++.+ +-|++.|.+ +.-+.+|.. .+.++.+++.+|+..+.+|.|= |-|. -....+.++|++.|-
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~d~~~--~~~~~~~~~Gad~i~ 81 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTMDAGE--YEAEQAFAAGADIVT 81 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeeccchH--HHHHHHHHcCCCEEE
Confidence 36788999999998 788888776 212333433 4678889888775555555441 3331 245678899999875
Q ss_pred eccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCC
Q psy12516 246 SSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283 (327)
Q Consensus 246 ~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d 283 (327)
.-. + +++..+++++...+++|....++
T Consensus 82 vh~----~-------~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 82 VLG----V-------ADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred Eec----c-------CCHHHHHHHHHHHHHcCCEEEEE
Confidence 321 1 23345677888888888777644
No 265
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=90.46 E-value=11 Score=33.59 Aligned_cols=155 Identities=17% Similarity=0.229 Sum_probs=83.7
Q ss_pred HHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccC
Q psy12516 3 VASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAG 77 (327)
Q Consensus 3 ~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~g 77 (327)
-++++.+ |+| .+-+.| |...|.-. ...++++++.. ..++..|..-.. ..+.+..+ ++|+++|-.=.-.
T Consensus 20 el~~l~~-g~d~lH~DiMD--G~FVPN~tfg~~~i~~ir~~t-~~~~DvHLMv~~---P~~~i~~~~~aGad~it~H~Ea 92 (229)
T PRK09722 20 QIEFLNS-KADYFHIDIMD--GHFVPNLTLSPFFVSQVKKLA-SKPLDVHLMVTD---PQDYIDQLADAGADFITLHPET 92 (229)
T ss_pred HHHHHHh-CCCEEEEeccc--CccCCCcccCHHHHHHHHhcC-CCCeEEEEEecC---HHHHHHHHHHcCCCEEEECccC
Confidence 3456666 888 477777 77777532 34577777653 477888887664 45566555 7999975422211
Q ss_pred CCCCCCCCCccCCCcHHHHHHHhhhhhcccCc------------------chhhhhhhhhHHHHHHhhcCChHHHHHHHH
Q psy12516 78 LGGCPYARGASGNVATEDLVYMLEGKSMQCGV------------------KEIAVFASASEMFSKRNINCTIEESLERFS 139 (327)
Q Consensus 78 lg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gi------------------d~i~l~~~~sd~~~~~~l~~s~ee~i~~~~ 139 (327)
.- ..+..++..+++.+++.|+ |.+-++ ++.+.+.-. .-.++.+++++
T Consensus 93 ~~-----------~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvM-sV~PGf~GQ---~fi~~~l~KI~ 157 (229)
T PRK09722 93 IN-----------GQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVM-TVDPGFAGQ---PFIPEMLDKIA 157 (229)
T ss_pred Cc-----------chHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEE-EEcCCCcch---hccHHHHHHHH
Confidence 10 0122333334444444332 111111 111111111 11345677778
Q ss_pred HHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 140 EVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 140 ~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
++-++..++|+.+...+ ++-.+. +.+.++.++|+|.+...
T Consensus 158 ~lr~~~~~~~~~~~IeV--------DGGI~~----~~i~~~~~aGad~~V~G 197 (229)
T PRK09722 158 ELKALRERNGLEYLIEV--------DGSCNQ----KTYEKLMEAGADVFIVG 197 (229)
T ss_pred HHHHHHHhcCCCeEEEE--------ECCCCH----HHHHHHHHcCCCEEEEC
Confidence 77777777886643211 223443 45567888999998765
No 266
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=90.43 E-value=7.5 Score=36.26 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=16.3
Q ss_pred cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 88 SGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 88 ~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
.|..+.+.+...++ ..++.|++.+-+..+..+
T Consensus 23 ~g~iD~~~l~~lv~-~li~~Gv~Gi~v~GstGE 54 (309)
T cd00952 23 TDTVDLDETARLVE-RLIAAGVDGILTMGTFGE 54 (309)
T ss_pred CCCcCHHHHHHHHH-HHHHcCCCEEEECccccc
Confidence 35666655544332 334466666555544443
No 267
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=90.43 E-value=2.5 Score=38.78 Aligned_cols=120 Identities=16% Similarity=0.186 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE-EecCCCC-ccC-HHHHHHHHHHHHHhcC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI-SLGDTIG-VGT-PGTMRLMLEDVLTVIP 214 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i-~l~Dt~G-~~~-P~~~~~~~~~~~~~~~ 214 (327)
.+.+++.|++.|+-+-+ |. -.+.|.+..+.+.+.+.+...| .+....- .+. -..+..++..+.+.++
T Consensus 6 ~~~ll~~Ake~~yAvpA-----fN-----~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~ 75 (286)
T COG0191 6 MKELLDKAKENGYAVPA-----FN-----INNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG 75 (286)
T ss_pred HHHHHHHHHHcCCceee-----ee-----ecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC
Confidence 37788999999987642 22 2577889999999999887754 3322211 233 3667778888888888
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
+|+.+| -|-|....-+..|+++|..- +|+|...+=| -..-+.+++...+..|+
T Consensus 76 -vPV~lH--lDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eE--------Ni~~tkevv~~ah~~gv 130 (286)
T COG0191 76 -VPVALH--LDHGASFEDCKQAIRAGFSSVMIDGSHLPFEE--------NIAITKEVVEFAHAYGV 130 (286)
T ss_pred -CCEEEE--CCCCCCHHHHHHHHhcCCceEEecCCcCCHHH--------HHHHHHHHHHHHHHcCC
Confidence 677765 57788899999999999864 7999886655 13345667777765543
No 268
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=90.41 E-value=14 Score=33.87 Aligned_cols=67 Identities=16% Similarity=-0.023 Sum_probs=51.0
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+-++.+.++|+|.| |-+...+| ..+++..++..+ +.+ +.++-. .+...+.|.+.|++.|-+++.|.-
T Consensus 78 ~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l----~MAD~s-tleEal~a~~~Gad~I~TTl~gyT 144 (283)
T cd04727 78 VEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVP----FVCGAR-NLGEALRRISEGAAMIRTKGEAGT 144 (283)
T ss_pred HHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCc----EEccCC-CHHHHHHHHHCCCCEEEecCCCCC
Confidence 35778999999999 88888889 577888888876 333 233332 267889999999999999987443
No 269
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=90.32 E-value=7.9 Score=36.23 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=72.5
Q ss_pred EEeeeccCCCCCC----------CChHHHHHHHHHHHHcCcC-EEEecCCCC--ccCHHHHHHHHHHHHHhcCCCe-EEE
Q psy12516 155 YISCVVGCPYEGA----------VPPHNVTRVATALYKMGCY-EISLGDTIG--VGTPGTMRLMLEDVLTVIPADR-LAV 220 (327)
Q Consensus 155 ~l~~~~g~~~~~r----------~~~e~l~~~~~~~~~~g~~-~i~l~Dt~G--~~~P~~~~~~~~~~~~~~~~~~-l~~ 220 (327)
++.+.|++-|+++ .++|++.+..+.+.+..-+ .=..=|-.| .+.| -+.++++.+++. +.+. ++.
T Consensus 118 nlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP-~l~~lVqalk~~-~~v~vVSm 195 (414)
T COG2100 118 NLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYP-HLVDLVQALKEH-KGVEVVSM 195 (414)
T ss_pred cceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccch-hHHHHHHHHhcC-CCceEEEE
Confidence 3455665555543 4789999998888876433 222335444 2333 456667777754 5433 444
Q ss_pred eecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCC
Q psy12516 221 HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKK 300 (327)
Q Consensus 221 H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~ 300 (327)
.+|-. -+.--..-+-.+||.|+|+.|+..+-. .+..+| .|.+ .+|++++.++++++.. +++
T Consensus 196 QTng~-~L~~~lv~eLeeAGLdRiNlSv~aLDp--------------k~Ak~L--~G~~-dYdv~kvle~aE~i~~-a~i 256 (414)
T COG2100 196 QTNGV-LLSKKLVDELEEAGLDRINLSVDALDP--------------KLAKML--AGRK-DYDVKKVLEVAEYIAN-AGI 256 (414)
T ss_pred eeCce-eccHHHHHHHHHhCCceEEeecccCCH--------------HHHHHh--cCcc-ccCHHHHHHHHHHHHh-CCC
Confidence 44432 233334445568999999999996654 233333 3333 4666777777766665 444
Q ss_pred C
Q psy12516 301 P 301 (327)
Q Consensus 301 ~ 301 (327)
.
T Consensus 257 d 257 (414)
T COG2100 257 D 257 (414)
T ss_pred C
Confidence 3
No 270
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=90.31 E-value=4.2 Score=38.67 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCc-cCHHHHHHHHHHHHHhcCCCeEEE-------eecCCcCcHHHHHHHHH-
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGV-GTPGTMRLMLEDVLTVIPADRLAV-------HCHDTYGQALANILTAM- 237 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~~~~l~~-------H~Hn~~g~a~an~l~a~- 237 (327)
+.++|++.+.++.+.+.|++++.+.+.... ...+.+.++++.+++.+|++.+.. |.-+..|+.....+..+
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lk 157 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELK 157 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 468999999999999999999999743222 234688899999999888643332 11234677777766655
Q ss_pred HhcCceee
Q psy12516 238 EFGISVFD 245 (327)
Q Consensus 238 ~~G~~~vd 245 (327)
++|++.+.
T Consensus 158 eAGld~~~ 165 (351)
T TIGR03700 158 EAGLDSMP 165 (351)
T ss_pred HcCCCcCC
Confidence 68998775
No 271
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=90.30 E-value=2.9 Score=38.21 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=67.0
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeecC-CcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCHD-TYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn-~~g~a~an~l~a~~~G 240 (327)
+..|.+-+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+++..+ .+++.+|.-. +.--++..+..|.++|
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G 92 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAG 92 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999 5788888888988888764 4678887764 3444677777888999
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
++.+=..
T Consensus 93 ad~v~v~ 99 (281)
T cd00408 93 ADGVLVV 99 (281)
T ss_pred CCEEEEC
Confidence 9987653
No 272
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=90.30 E-value=2.2 Score=39.70 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=70.6
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEE-eecCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAV-HCHDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~-H~Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.+++..+++...+ +|+-. ...|+..-+++.+..|-+.|
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~G 99 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLG 99 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 58899999999999988754 56666 55677899999999999999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
+|.+=+
T Consensus 100 ad~il~ 105 (299)
T COG0329 100 ADGILV 105 (299)
T ss_pred CCEEEE
Confidence 987654
No 273
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=90.28 E-value=15 Score=33.93 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=59.5
Q ss_pred CCCCCChHHHHHHHHHHHHcCcCEEEecCCC--------------CccCHHHHHHHHHHHHHhc--CCCeEEEeec----
Q psy12516 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTI--------------GVGTPGTMRLMLEDVLTVI--PADRLAVHCH---- 223 (327)
Q Consensus 164 ~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~--------------G~~~P~~~~~~~~~~~~~~--~~~~l~~H~H---- 223 (327)
+.+ -++..+.+.++.+.+.|+..|.|-|.. .+.++++..+.++..++.. ++..|-..+-
T Consensus 86 d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~ 164 (285)
T TIGR02320 86 DTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL 164 (285)
T ss_pred CCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc
Confidence 445 689999999999999999999998864 3567788888888887653 3334444411
Q ss_pred -CCcCcHHHHHHHHHHhcCceeee
Q psy12516 224 -DTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 224 -n~~g~a~an~l~a~~~G~~~vd~ 246 (327)
...--++.-+.+..++|||.|=.
T Consensus 165 ~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 165 GKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEe
Confidence 12335677778889999997654
No 274
>PRK07094 biotin synthase; Provisional
Probab=90.25 E-value=3.3 Score=38.67 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCC-CCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHH-HHHHHHHHhcCceee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDT-IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQAL-ANILTAMEFGISVFD 245 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~-an~l~a~~~G~~~vd 245 (327)
.+++++.+.++.+.+.|++.+.|... ........+.++++.+++. +++.+ |.+. |.-. .......++|++.+.
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l~i--~~~~--g~~~~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDVAI--TLSL--GERSYEEYKAWKEAGADRYL 144 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCceE--EEec--CCCCHHHHHHHHHcCCCEEE
Confidence 47888888888888888888888632 2234567788888888875 44333 3322 3222 223334477888877
Q ss_pred eccccC
Q psy12516 246 SSIAGL 251 (327)
Q Consensus 246 ~s~~G~ 251 (327)
.++-+.
T Consensus 145 ~glEs~ 150 (323)
T PRK07094 145 LRHETA 150 (323)
T ss_pred eccccC
Confidence 655543
No 275
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=90.16 E-value=3 Score=39.92 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=52.7
Q ss_pred CCCChHHHHHHHHHHHH--cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCce
Q psy12516 166 GAVPPHNVTRVATALYK--MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISV 243 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~--~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~ 243 (327)
+..+.+.+.+-+.++.. .|.+.+.-+--.+.-+|+++.++|..||+..|..||++-.=-..+....... +.++|+|.
T Consensus 152 G~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~ 230 (368)
T PF01645_consen 152 GHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADF 230 (368)
T ss_dssp -EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SE
T ss_pred ceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCE
Confidence 35677777777776664 4678888888888999999999999999999889999876655555443333 78999998
Q ss_pred e--eeccccCCC
Q psy12516 244 F--DSSIAGLGG 253 (327)
Q Consensus 244 v--d~s~~G~G~ 253 (327)
| |++=.|-|.
T Consensus 231 ItIDG~~GGTGA 242 (368)
T PF01645_consen 231 ITIDGAEGGTGA 242 (368)
T ss_dssp EEEE-TT---SS
T ss_pred EEEeCCCCCCCC
Confidence 5 554444443
No 276
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=90.14 E-value=11 Score=34.25 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=83.7
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+++.|.|.+.+....... ..++..+.+.++.+.+++.|+.+.+. .+..|...+...+++.+...++.+.+
T Consensus 101 ~A~~~Gad~v~~~~~~g~~--------~~~~~~~~~~~v~~~~~~~g~pl~vi-~~~~g~~~e~~~~~~~i~~a~~~a~e 171 (267)
T PRK07226 101 EAIKLGADAVSVHVNVGSE--------TEAEMLEDLGEVAEECEEWGMPLLAM-MYPRGPGIKNEYDPEVVAHAARVAAE 171 (267)
T ss_pred HHHHcCCCEEEEEEecCCh--------hHHHHHHHHHHHHHHHHHcCCcEEEE-EecCCCccCCCccHHHHHHHHHHHHH
Confidence 3466777765543222110 12334777888899999999987542 23223212233567788888899999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE---eecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 259 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g 259 (327)
.|+|.|-.. ..| .+ +.++.+.+..+ +|+-. -..+|+-.+..+.-.++++|++.+..+-.=+
T Consensus 172 ~GAD~vKt~-~~~--~~----~~l~~~~~~~~-ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~-------- 235 (267)
T PRK07226 172 LGADIVKTN-YTG--DP----ESFREVVEGCP-VPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVF-------- 235 (267)
T ss_pred HCCCEEeeC-CCC--CH----HHHHHHHHhCC-CCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhh--------
Confidence 999988654 112 22 33444444322 34332 1122555678888889999999554332211
Q ss_pred CCCCccHHHHHHHHHh
Q psy12516 260 ASGNVATEDLVYMLEG 275 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~ 275 (327)
...+.++.+..|+.
T Consensus 236 --~~~~p~~~~~~l~~ 249 (267)
T PRK07226 236 --QHEDPEAITRAISA 249 (267)
T ss_pred --cCCCHHHHHHHHHH
Confidence 22445666666665
No 277
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.10 E-value=10 Score=37.38 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=49.7
Q ss_pred HHHHHHhhhhhcccCcchhhh-hhhhhHHHHH-HhhcCChHHHHHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCC
Q psy12516 94 EDLVYMLEGKSMQCGVKEIAV-FASASEMFSK-RNINCTIEESLERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 94 e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~~~-~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~ 169 (327)
++++..+.+. ..|+..+++ +.+.|+...+ .+-+.+ .+...+.++.+++. |+.+...+. +|.|.+ +
T Consensus 245 ~ell~~~~~~--~~g~~~l~iglQSgsd~vLk~m~R~~t----~~~~~~~v~~lr~~~pgi~i~td~I--vGfPgE---T 313 (445)
T PRK14340 245 ESLVRTIAAR--PNICNHIHLPVQSGSSRMLRRMNRGHT----IEEYLEKIALIRSAIPGVTLSTDLI--AGFCGE---T 313 (445)
T ss_pred HHHHHHHHhC--CCCCCeEEECCCcCCHHHHHhcCCCCC----HHHHHHHHHHHHHhCCCCEEeccEE--EECCCC---C
Confidence 4555555332 224555555 3344544332 222223 45577788888887 888765554 566765 5
Q ss_pred hHHHHHHHHHHHHcCcCEEE
Q psy12516 170 PHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~ 189 (327)
.+.+.+..+.+.+.+.+.+.
T Consensus 314 ~edf~~tl~~~~~~~~~~~~ 333 (445)
T PRK14340 314 EEDHRATLSLMEEVRFDSAF 333 (445)
T ss_pred HHHHHHHHHHHHhcCCCEEe
Confidence 67777777888888777543
No 278
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=90.02 E-value=15 Score=33.41 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=85.7
Q ss_pred HHHHHHcCcCEEEecCCc----------cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEe
Q psy12516 4 ASALYKMGCYEISLGDTI----------GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 73 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt~----------G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~ 73 (327)
++.+.++|+|.|...|+. +..+..++...++.+.+..+ .++ -..|.
T Consensus 25 A~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~-~p~-----------------------viaD~ 80 (254)
T cd06557 25 AKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAP-RAL-----------------------VVADM 80 (254)
T ss_pred HHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCC-CCe-----------------------EEEeC
Confidence 566788899999888875 34556666666666666554 221 12332
Q ss_pred cccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEE
Q psy12516 74 SIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVR 153 (327)
Q Consensus 74 ~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~ 153 (327)
++|+ .+ .++|+.+....+.-.+.|++.+.+-+. ....+.|+.+.+.|+.|.
T Consensus 81 ---~fg~-------y~-~~~~~av~~a~r~~~~aGa~aVkiEd~------------------~~~~~~I~al~~agipV~ 131 (254)
T cd06557 81 ---PFGS-------YQ-TSPEQALRNAARLMKEAGADAVKLEGG------------------AEVAETIRALVDAGIPVM 131 (254)
T ss_pred ---CCCc-------cc-CCHHHHHHHHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHcCCCee
Confidence 2221 11 234555554444444467766665432 124455667778887765
Q ss_pred EEEeee------ccCC-CCCCCC--hHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 154 GYISCV------VGCP-YEGAVP--PHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 154 ~~l~~~------~g~~-~~~r~~--~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.+... ++.. -.+|.+ .+.+.+-++.+.++|++.|.+.-. |. ++.+.+.+.++-+.|++
T Consensus 132 gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v-----~~---~~~~~i~~~v~iP~igi 199 (254)
T cd06557 132 GHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECV-----PA---ELAKEITEALSIPTIGI 199 (254)
T ss_pred ccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC-----CH---HHHHHHHHhCCCCEEEe
Confidence 443320 1000 012333 456777788888999999987532 33 35566666654333433
No 279
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=89.97 E-value=21 Score=35.15 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
+++..+.++.+.+.|+.+.+..... | ..+.+.+.++++.+.+.|++.+.+
T Consensus 173 ~e~~l~~l~~l~~~G~~v~v~~vlI---p---GiND~~i~~l~~~~~~lg~~~~nl 222 (442)
T TIGR01290 173 IERQLEGLEKLTERGILVKVNSVLI---P---GINDEHLVEVSKQVKELGAFLHNV 222 (442)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEEee---C---CcCHHHHHHHHHHHHhCCCcEEEe
Confidence 4566677788888899876543332 2 255688999999999999876655
No 280
>PLN02334 ribulose-phosphate 3-epimerase
Probab=89.86 E-value=14 Score=32.81 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC-cCEEE----ecCCCCccCHHHHHHHHHHHHHhc
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG-CYEIS----LGDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g-~~~i~----l~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
...++..++.|..+...+. | .++. +..+.+.+.| +|.|. .+.+.|...|....+.++.+++..
T Consensus 105 ~~~~~~i~~~g~~iGls~~-----~----~t~~---~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~ 172 (229)
T PLN02334 105 HRLIQQIKSAGMKAGVVLN-----P----GTPV---EAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY 172 (229)
T ss_pred HHHHHHHHHCCCeEEEEEC-----C----CCCH---HHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC
Confidence 3456677777876653221 1 1222 2233344443 77652 233444445556666778888776
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+..++.+ +-|.-..|.-...++|++.|=+
T Consensus 173 ~~~~I~a----~GGI~~e~i~~l~~aGad~vvv 201 (229)
T PLN02334 173 PELDIEV----DGGVGPSTIDKAAEAGANVIVA 201 (229)
T ss_pred CCCcEEE----eCCCCHHHHHHHHHcCCCEEEE
Confidence 6555554 5578888999999999998743
No 281
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=89.85 E-value=14 Score=32.93 Aligned_cols=92 Identities=15% Similarity=0.089 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHcCcCEEEe--cCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHh-cCceeee
Q psy12516 170 PHNVTRVATALYKMGCYEISL--GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF-GISVFDS 246 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~-G~~~vd~ 246 (327)
.....++++.+.+.|++.|.+ -+..|..... -.++++.+++..+ +|+..-.--. ........++. |++.+=.
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~-~~~~i~~i~~~~~-~pvia~GGi~---~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY-DLELIRAVSSAVN-IPVIASGGAG---KPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC-CHHHHHHHHhhCC-CCEEEeCCCC---CHHHHHHHHHhCCCCEEEE
Confidence 445677888899999998888 4444443322 2455666766543 4666543211 12334444554 6665432
Q ss_pred ccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 247 SIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 247 s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
|. ++ -.|..+++++...|++
T Consensus 223 -----g~-al---~~~~~~~~~~~~~~~~ 242 (243)
T cd04731 223 -----AS-IF---HFGEYTIAELKEYLAE 242 (243)
T ss_pred -----eH-HH---HcCCCCHHHHHHHHhh
Confidence 11 11 1456678888777764
No 282
>PRK01060 endonuclease IV; Provisional
Probab=89.79 E-value=15 Score=33.27 Aligned_cols=215 Identities=16% Similarity=0.267 Sum_probs=104.7
Q ss_pred eeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHH
Q psy12516 44 RLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMF 122 (327)
Q Consensus 44 ~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~ 122 (327)
++|+|..-..+ +..++.-+ +.|.+.||..+..-.. |. ..... ++-+..+++..-+.|+....+..... ..
T Consensus 3 ~~g~~~~~~~~--~~~~l~~~~~~G~d~vEl~~~~p~~--~~---~~~~~-~~~~~~lk~~~~~~gl~~~~~~~h~~-~~ 73 (281)
T PRK01060 3 LIGAHVSAAGG--LEGAVAEAAEIGANAFMIFTGNPQQ--WK---RKPLE-ELNIEAFKAACEKYGISPEDILVHAP-YL 73 (281)
T ss_pred eEEEeeecCCC--HHHHHHHHHHcCCCEEEEECCCCCC--Cc---CCCCC-HHHHHHHHHHHHHcCCCCCceEEecc-eE
Confidence 68888776666 55555544 8999999976653222 11 11222 33344455555555554211110000 00
Q ss_pred HHHhhc----CChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChH-HHHHHHHHHHH-----cCcCEEEecC
Q psy12516 123 SKRNIN----CTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPH-NVTRVATALYK-----MGCYEISLGD 192 (327)
Q Consensus 123 ~~~~l~----~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e-~l~~~~~~~~~-----~g~~~i~l~D 192 (327)
.++. ..++..++.+++.++.|++.|....+. ..|.... ..+.+ .+..+.+.+.+ .|+ .|.|--
T Consensus 74 --~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~---h~G~~~~-~~~~~~~~~~~~e~l~~l~~~~~gv-~l~iEn 146 (281)
T PRK01060 74 --INLGNPNKEILEKSRDFLIQEIERCAALGAKLLVF---HPGSHLG-DIDEEDCLARIAESLNEALDKTQGV-TIVLEN 146 (281)
T ss_pred --ecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE---cCCcCCC-CCcHHHHHHHHHHHHHHHHhcCCCC-EEEEec
Confidence 0110 012345778999999999999974332 1221111 11222 33333333332 232 345544
Q ss_pred CCCc-----cCHHHHHHHHHHHHHhcCCCeEEE-----eecCCcCcHHH----HHHHHHHh-----cCceeeeccc--cC
Q psy12516 193 TIGV-----GTPGTMRLMLEDVLTVIPADRLAV-----HCHDTYGQALA----NILTAMEF-----GISVFDSSIA--GL 251 (327)
Q Consensus 193 t~G~-----~~P~~~~~~~~~~~~~~~~~~l~~-----H~Hn~~g~a~a----n~l~a~~~-----G~~~vd~s~~--G~ 251 (327)
+.+. -+|.++.++++.+.. +. .+++ |.+.. |.-.. ..+..+.. -+.+++..=+ +.
T Consensus 147 ~~~~~~~~~~~~~~~~~l~~~v~~--~~-~vg~~lD~gH~~~~-g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~~~ 222 (281)
T PRK01060 147 TAGQGSELGRRFEELARIIDGVED--KS-RVGVCLDTCHAFAA-GYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKNEF 222 (281)
T ss_pred CCCCCCcccCCHHHHHHHHHhcCC--cc-cEEEEEeHHhHhhc-CCChHHHHHHHHHHHHHhhChhheeEEEEecCCCcc
Confidence 3331 367787777765532 11 1443 44421 22222 44444431 3444544322 11
Q ss_pred CC---CCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 252 GG---CPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 252 G~---~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
|. +-..+| .|+.+.+.++..|++.||+
T Consensus 223 ~~~~d~H~~~G-~G~id~~~~~~~L~~~~y~ 252 (281)
T PRK01060 223 GSRKDRHANLG-EGTIGFDALRYIVHDPRFD 252 (281)
T ss_pred cCCCCcccCCc-CCcCCHHHHHHHHhCcccC
Confidence 21 112334 6899999999999987764
No 283
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.74 E-value=15 Score=36.53 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=50.3
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++.+.+.|+|.|.+ |++ |. -..+.++++.+++.+|+.++-.---.+ ...+..++++|++.|-++++
T Consensus 230 ~~a~~Lv~aGvd~i~~-D~a~~~--~~~~~~~i~~ik~~~p~~~v~agnv~t----~~~a~~l~~aGad~v~vgig 298 (479)
T PRK07807 230 AKARALLEAGVDVLVV-DTAHGH--QEKMLEALRAVRALDPGVPIVAGNVVT----AEGTRDLVEAGADIVKVGVG 298 (479)
T ss_pred HHHHHHHHhCCCEEEE-eccCCc--cHHHHHHHHHHHHHCCCCeEEeeccCC----HHHHHHHHHcCCCEEEECcc
Confidence 5678899999999776 766 65 456778899999999976655432333 34567778999999987665
No 284
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=89.73 E-value=4.8 Score=36.92 Aligned_cols=64 Identities=17% Similarity=0.079 Sum_probs=49.0
Q ss_pred HHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccC
Q psy12516 3 VASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~g 77 (327)
-++.+.++|+|.| |-+-..+| ..+++...+..+ .+++- ++-. .+...+.+++.|++.|-++..|
T Consensus 81 Ea~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfm----ad~~-~l~EAlrai~~GadmI~Tt~e~ 144 (287)
T TIGR00343 81 EAQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFV----CGAR-DLGEALRRINEGAAMIRTKGEA 144 (287)
T ss_pred HHHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEE----ccCC-CHHHHHHHHHCCCCEEeccccC
Confidence 4678999999999 88899999 567788888877 34433 2222 2677899999999999988763
No 285
>PRK06801 hypothetical protein; Provisional
Probab=89.70 E-value=16 Score=33.80 Aligned_cols=95 Identities=9% Similarity=0.067 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC-EEEecCCCCc-cCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY-EISLGDTIGV-GTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~-~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~ 214 (327)
.++++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+.. +|.+....-. ..+..+..++..+.++..
T Consensus 5 ~~~~~l~~A~~~~yaV~A-----fn-----~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK06801 5 SLANGLAHARKHGYALGA-----FN-----VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD 74 (286)
T ss_pred cHHHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC
Confidence 467788999999998752 32 25788999999999998876 4444443332 445667777777777664
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCcee
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVF 244 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v 244 (327)
+|+.+|. |-|.-......|+++|++-|
T Consensus 75 -vpV~lHl--DH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 75 -IPVVLNL--DHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHhCCcEE
Confidence 5777765 45777888999999999865
No 286
>PRK07360 FO synthase subunit 2; Reviewed
Probab=89.64 E-value=3.4 Score=39.59 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=56.6
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCc-cC-HHHHHHHHHHHHHhcCCCeEEEee---------cCCcCcHHHHHHH
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGV-GT-PGTMRLMLEDVLTVIPADRLAVHC---------HDTYGQALANILT 235 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-~~-P~~~~~~~~~~~~~~~~~~l~~H~---------Hn~~g~a~an~l~ 235 (327)
+.++|++.+.++++.+.|+.++.|..-.+. .. ++.+.++++.+|+.+|+ +.+|. -.+.|+..-..+.
T Consensus 90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~--i~i~a~s~~ei~~~~~~~G~~~~e~l~ 167 (371)
T PRK07360 90 WLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD--IHLHAFSPMEVYFAAREDGLSYEEVLK 167 (371)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC--cceeeCCHHHHHHHHhhcCCCHHHHHH
Confidence 578999999999999999999999822122 22 46788899999987775 33332 2367887777655
Q ss_pred HH-HhcCceee
Q psy12516 236 AM-EFGISVFD 245 (327)
Q Consensus 236 a~-~~G~~~vd 245 (327)
.+ ++|++.+.
T Consensus 168 ~LkeAGld~~~ 178 (371)
T PRK07360 168 ALKDAGLDSMP 178 (371)
T ss_pred HHHHcCCCcCC
Confidence 55 79999885
No 287
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=89.62 E-value=17 Score=33.58 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=65.6
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
...++.++-++...++|+|.|.+. .+..+++++.++++.+...+|++|+-+.. ..++.- ..-..-+.|+++|-..
T Consensus 166 ~~~~eAi~Ra~ay~eAGAD~ifv~--~~~~~~~ei~~~~~~~~~~~p~~pl~~~~-~~~~~~--~~~eL~~lG~~~v~~~ 240 (285)
T TIGR02320 166 KGMEDALKRAEAYAEAGADGIMIH--SRKKDPDEILEFARRFRNHYPRTPLVIVP-TSYYTT--PTDEFRDAGISVVIYA 240 (285)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEec--CCCCCHHHHHHHHHHhhhhCCCCCEEEec-CCCCCC--CHHHHHHcCCCEEEEh
Confidence 356788888999999999999886 34678999999999998878777875432 222221 2345557799987543
Q ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q psy12516 248 IAGLGGCPYARGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 248 ~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
..-+ |+-...+++.+..+.+.|.
T Consensus 241 ~~~~--------~aa~~a~~~~~~~~~~~g~ 263 (285)
T TIGR02320 241 NHLL--------RAAYAAMQQVAERILEHGR 263 (285)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHcCC
Confidence 3221 3445556666666665443
No 288
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=89.61 E-value=11 Score=34.62 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=74.2
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeec-CCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCH-DTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~H-n~~g~a~an~l~a~~~G 240 (327)
+..+.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+..+ .+++-+++= ++..-++..+..|.++|
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~G 96 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAG 96 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcC
Confidence 578999999999999999999999999998 5888888888988888764 466666554 47777888888899999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++.+-..-- + ....+-++++.+++.
T Consensus 97 ad~v~v~~P------~----~~~~s~~~l~~y~~~ 121 (289)
T PF00701_consen 97 ADAVLVIPP------Y----YFKPSQEELIDYFRA 121 (289)
T ss_dssp -SEEEEEES------T----SSSCCHHHHHHHHHH
T ss_pred ceEEEEecc------c----cccchhhHHHHHHHH
Confidence 998765332 1 123456666665553
No 289
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=89.60 E-value=11 Score=34.72 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc-----------cCHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV-----------GTPGTMR 203 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-----------~~P~~~~ 203 (327)
++.++++.+. ..+.|.+-+..-|| ++..+.+.++++.++|+-.+.|-|.++- ..+.++.
T Consensus 67 ~~~vrrI~~a---~~lPv~vD~dtGfG-------~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v 136 (289)
T COG2513 67 LADARRITDA---VDLPVLVDIDTGFG-------EALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMV 136 (289)
T ss_pred HHHHHHHHhh---cCCceEEeccCCCC-------cHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHH
Confidence 4444444333 36666554444333 4678889999999999999999999883 5567777
Q ss_pred HHHHHHHHhcCCCeEEEee------cCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhC
Q psy12516 204 LMLEDVLTVIPADRLAVHC------HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGM 276 (327)
Q Consensus 204 ~~~~~~~~~~~~~~l~~H~------Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~ 276 (327)
+.|+..++..++.++.+-. +.-+.-|+.-+.+-+++|+|.|= ..|..+.|++....+..
T Consensus 137 ~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if--------------~~al~~~e~i~~f~~av 201 (289)
T COG2513 137 DRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIF--------------PEALTDLEEIRAFAEAV 201 (289)
T ss_pred HHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEc--------------cccCCCHHHHHHHHHhc
Confidence 7788888776654444432 33345567788888999999764 23455566666655543
No 290
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=89.53 E-value=11 Score=33.61 Aligned_cols=77 Identities=22% Similarity=0.247 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCc-HHHHHHHHHHhcCceee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQ-ALANILTAMEFGISVFD 245 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~-a~an~l~a~~~G~~~vd 245 (327)
.+.+.-.+.++.+.+.+.+.+.|.-........+..+++..+...+| +.|..+ +|. ...+.+.++..|+|.+|
T Consensus 65 ~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~~pr~l-----~G~~~P~~i~~~v~~GvD~fD 139 (238)
T PF01702_consen 65 DDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPPDKPRYL-----LGVGTPEEILEAVYLGVDLFD 139 (238)
T ss_dssp T-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TTS-EEE-----TTB-SHHHHHHHHHTT--EEE
T ss_pred CCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCcccceec-----cCCCCHHHHHHHHHcCCcEEc
Confidence 45555667778888867899988876666678899999999998886 444444 244 46888999999999999
Q ss_pred eccc
Q psy12516 246 SSIA 249 (327)
Q Consensus 246 ~s~~ 249 (327)
++..
T Consensus 140 s~~p 143 (238)
T PF01702_consen 140 SSYP 143 (238)
T ss_dssp ESHH
T ss_pred chHH
Confidence 8874
No 291
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=89.46 E-value=9.8 Score=33.28 Aligned_cols=72 Identities=18% Similarity=0.340 Sum_probs=48.1
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHH-HHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPG-TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~-~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
|+-++.+.+.|++.|.+ |-+=...|. .+.++++. ...|+.-+- -|-. .+...+.|.++|++.|-+++.|.-
T Consensus 88 lkeVd~L~~~Ga~IIA~-DaT~R~RP~~~~~~~i~~--~k~~~~l~M----AD~S-t~ee~l~a~~~G~D~IGTTLsGYT 159 (229)
T COG3010 88 LKEVDALAEAGADIIAF-DATDRPRPDGDLEELIAR--IKYPGQLAM----ADCS-TFEEGLNAHKLGFDIIGTTLSGYT 159 (229)
T ss_pred HHHHHHHHHCCCcEEEe-ecccCCCCcchHHHHHHH--hhcCCcEEE----eccC-CHHHHHHHHHcCCcEEeccccccc
Confidence 35678899999999887 666667777 56666655 222321111 1111 245567888999999999999887
Q ss_pred C
Q psy12516 80 G 80 (327)
Q Consensus 80 ~ 80 (327)
+
T Consensus 160 ~ 160 (229)
T COG3010 160 G 160 (229)
T ss_pred C
Confidence 6
No 292
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=89.46 E-value=12 Score=35.50 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 134 SLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 134 ~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.++++.+.++..++.|+.+.+.... .+.+.+++.++++.+.+.|++.+.+
T Consensus 130 ~f~~v~~~i~~l~~~g~~v~v~~vv-------~~~N~~~l~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 130 AFEQKLAMARAVKAAGLPLTLNFVI-------HRHNIDQIPEIIELAIELGADRVEL 179 (358)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEe-------ccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3666777788888999987644322 2567788899999999999998776
No 293
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=89.37 E-value=16 Score=35.26 Aligned_cols=130 Identities=12% Similarity=0.029 Sum_probs=75.4
Q ss_pred CcCEEEecCCc-cccCHHHHHHHHHHHHhhcC--C-CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGDTI-GVGTPGTMRLMLEDVLTVIP--A-DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~--~-~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
.++.|+|..-+ -.++|..+.++++.+++.++ . .++.+.++-+ .-....+.++ ++|+.+|..++..+..
T Consensus 62 ~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~--~~~~e~l~~l~~~GvnRiSiGvQS~~d----- 134 (390)
T PRK06582 62 YIKSIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEITLETNPT--SFETEKFKAFKLAGINRVSIGVQSLKE----- 134 (390)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCC--cCCHHHHHHHHHCCCCEEEEECCcCCH-----
Confidence 36789998844 57889999999999998653 2 4455555332 2223555666 5888888877664432
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE 165 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~ 165 (327)
+++.. .+..+ + .+.+.+.++.+++.+..+.+.++ +|-|.
T Consensus 135 ---------~~L~~---lgR~h----------------------~----~~~~~~ai~~~~~~~~~v~~DlI--~GlPg- 173 (390)
T PRK06582 135 ---------DDLKK---LGRTH----------------------D----CMQAIKTIEAANTIFPRVSFDLI--YARSG- 173 (390)
T ss_pred ---------HHHHH---cCCCC----------------------C----HHHHHHHHHHHHHhCCcEEEEee--cCCCC-
Confidence 22111 11111 1 23344455666666555554444 45443
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+-++.+.+.+++.|.+
T Consensus 174 --qt~e~~~~~l~~~~~l~p~his~ 196 (390)
T PRK06582 174 --QTLKDWQEELKQAMQLATSHISL 196 (390)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEE
Confidence 34566777777777777775544
No 294
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=89.12 E-value=3.4 Score=41.11 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=52.8
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++.+.+.|+|.|. .|++ |. +..+.+.++.+++.+|+.++.. -.......+..++++|++.|+++++
T Consensus 231 e~a~~L~~agvdviv-vD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~g 299 (486)
T PRK05567 231 ERAEALVEAGVDVLV-VDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGIG 299 (486)
T ss_pred HHHHHHHHhCCCEEE-EECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECCC
Confidence 568889999999775 5654 54 4678888999999998888777 3344456788888999999997653
No 295
>PRK06267 hypothetical protein; Provisional
Probab=89.08 E-value=21 Score=33.92 Aligned_cols=123 Identities=12% Similarity=0.120 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe------cCC----CCccCHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL------GDT----IGVGTPGTMRL 204 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l------~Dt----~G~~~P~~~~~ 204 (327)
++...+.++.+++.|+++...+. +| .. -+.+++.+..+.+.+.+++.+.+ ++| .-..+|.++.+
T Consensus 152 ~ed~~~~l~~ak~aGi~v~~g~I--iG-lg---Et~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr 225 (350)
T PRK06267 152 LDKIKEMLLKAKDLGLKTGITII--LG-LG---ETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMN 225 (350)
T ss_pred HHHHHHHHHHHHHcCCeeeeeEE--Ee-CC---CCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHH
Confidence 44566778899999999765433 33 11 24678888899999999885432 343 12367789999
Q ss_pred HHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee--eccccCCCCCCCCCCCCCccHHHHHHH
Q psy12516 205 MLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD--SSIAGLGGCPYARGASGNVATEDLVYM 272 (327)
Q Consensus 205 ~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd--~s~~G~G~~p~~~g~~Gn~~~e~~~~~ 272 (327)
++..+|-.+|..++-.=.--+.....+ .++.+||+.+- -...+++- ..|+..-+++-..
T Consensus 226 ~ia~~Rl~lP~~~I~~~~~~~~l~~~~---~~~~aGaN~i~~~p~~g~ylt------~~g~~~~~~~~~~ 286 (350)
T PRK06267 226 WVSSVRLNFPKIKIITGTWVDKLTNIG---PLIMSGSNVITKFPLFSMYGT------KEGKRVENEIRWT 286 (350)
T ss_pred HHHHHHHHCCCCCcchhhHhHhcchhh---HHhhcCcceeeccchhccCcc------cCCCCHHHHHHHh
Confidence 999999888986663211101111111 24557887762 11222232 4677777776654
No 296
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=89.07 E-value=4.1 Score=40.13 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
+..+.++.+.+.|+|.|.+--+.| .-..+.+.++.+++.+|+++|.. -.......+..++++|++.|.+++
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g--~~~~~~~~i~~i~~~~~~~~vi~----G~v~t~~~a~~l~~aGad~i~vg~ 294 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG--HSIYVIDSIKEIKKTYPDLDIIA----GNVATAEQAKALIDAGADGLRVGI 294 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC--cHhHHHHHHHHHHHhCCCCCEEE----EeCCCHHHHHHHHHhCCCEEEECC
Confidence 444566688899999988855555 33567888999999998888777 223446778889999999999866
No 297
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=88.92 E-value=22 Score=33.96 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
++++.+.++.+++.|+.+.+.... .+.+.+++.++++.+.+.|++.+.+.
T Consensus 140 f~~~~~~i~~l~~~g~~v~i~~vv-------~~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 140 FAKKLAVARLVKAHGYPLTLNAVI-------HRHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred HHHHHHHHHHHHHCCCceEEEEEe-------ecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 556667788888999987644321 25677889999999999999988764
No 298
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=88.86 E-value=9.8 Score=37.89 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=62.8
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcH-HHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQA-LANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a-~an~l~a~~~G 240 (327)
+-..++.-.+.++.+.+.+.+.+.|.-.+..+ ...++.+++..++..+| +.|+.+. |.+ ..+...++..|
T Consensus 166 Gg~~~dLR~~sa~~l~~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL~-----GvG~P~~i~~~V~lG 240 (487)
T PRK13533 166 GGTYPDLREESAREASKLGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHLF-----GAGHPMMFALAVALG 240 (487)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEEe-----CCCCHHHHHHHHHhC
Confidence 44677788888999999999999988765554 56889999999999884 4566652 555 56888999999
Q ss_pred Cceeeecccc
Q psy12516 241 ISVFDSSIAG 250 (327)
Q Consensus 241 ~~~vd~s~~G 250 (327)
+|.+|++..-
T Consensus 241 vDlFD~v~pt 250 (487)
T PRK13533 241 CDLFDSAAYA 250 (487)
T ss_pred CCceeccHHH
Confidence 9999987653
No 299
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=88.69 E-value=11 Score=33.31 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=74.1
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc---cCHHHHHHHHHHHHHhcCC-Ce----EEEeecCCcCcHHH
Q psy12516 160 VGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV---GTPGTMRLMLEDVLTVIPA-DR----LAVHCHDTYGQALA 231 (327)
Q Consensus 160 ~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~~~~~~~~~~~~~~~-~~----l~~H~Hn~~g~a~a 231 (327)
.|.|.. ..+.+-=..-++.+.+.|+|.|-+.=..|. ...+.+++-++.+++..++ .. |+.-.=++--. ..
T Consensus 67 igFP~G-~~~t~~K~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~-~~ 144 (228)
T COG0274 67 IGFPLG-ANTTAVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEK-RK 144 (228)
T ss_pred cCCCCC-CChHHHHHHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHH-HH
Confidence 344543 234443344467788899999888777775 3467888888888888775 22 33333334334 66
Q ss_pred HHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCC
Q psy12516 232 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA 282 (327)
Q Consensus 232 n~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~ 282 (327)
.+..++++|+|+|-+|-+. .+|++.+|++..+.+-.|.+.++
T Consensus 145 A~~i~~~aGAdFVKTSTGf---------~~~gAT~edv~lM~~~vg~~vgv 186 (228)
T COG0274 145 ACEIAIEAGADFVKTSTGF---------SAGGATVEDVKLMKETVGGRVGV 186 (228)
T ss_pred HHHHHHHhCCCEEEcCCCC---------CCCCCCHHHHHHHHHHhccCcee
Confidence 7788899999999988752 24688999888776654444443
No 300
>TIGR03586 PseI pseudaminic acid synthase.
Probab=88.66 E-value=4.1 Score=38.39 Aligned_cols=94 Identities=16% Similarity=0.259 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe--cCCCCccCHHHHHHH--HHHHHHhcC
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL--GDTIGVGTPGTMRLM--LEDVLTVIP 214 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~--~~~~~~~~~ 214 (327)
.++++.+.+.|..|- ++. +-.+.+++...++.+.+.|...|.| | +.+.-+|....++ +..+++.++
T Consensus 124 ~~LL~~va~~gkPvi--lst-------G~~t~~Ei~~Av~~i~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~f~ 193 (327)
T TIGR03586 124 LPLIRYVAKTGKPII--MST-------GIATLEEIQEAVEACREAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAERFN 193 (327)
T ss_pred HHHHHHHHhcCCcEE--EEC-------CCCCHHHHHHHHHHHHHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHHhC
Confidence 456677777788875 232 2368899999999999999865555 5 5666566554443 678888885
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.||++--|- .| ...+++|+.+||+.|+.
T Consensus 194 -~pVG~SDHt-~G--~~~~~aAva~GA~iIEk 221 (327)
T TIGR03586 194 -VPVGLSDHT-LG--ILAPVAAVALGACVIEK 221 (327)
T ss_pred -CCEEeeCCC-Cc--hHHHHHHHHcCCCEEEe
Confidence 689885553 34 68889999999998764
No 301
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=88.57 E-value=4.1 Score=38.52 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.+.+...+.++++.++|++.++++= .-.+-.+-++.+++..| +||..-.|-|+-+| +.|+++|++.+-
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav-----~~~~~a~al~~I~~~~~-iPlvADIHFd~~lA----l~a~~~G~~~iR-- 106 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAV-----PDMEAAAALPEIKKQLP-VPLVADIHFDYRLA----LAAAEAGADALR-- 106 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcc-----CCHHHHHhHHHHHHcCC-CCEEEecCCCHHHH----HHHHHhCCCEEE--
Confidence 5667778888888999999776632 11356677899999887 69999999999776 889999999873
Q ss_pred cccCCCCCCCCCCCCCc-----cHHHHHHHHHhCCC--CCCCChhhHHHHHHHHHHhcCCCCC
Q psy12516 248 IAGLGGCPYARGASGNV-----ATEDLVYMLEGMGI--ETGADLTSLLRTGHYICGKLKKPSN 303 (327)
Q Consensus 248 ~~G~G~~p~~~g~~Gn~-----~~e~~~~~l~~~g~--~~~~d~~~l~~~~~~~~~~~~~~~~ 303 (327)
++ .||. .+++++...++.|+ ..|+|--.|. +.+.+..|.+.|
T Consensus 107 IN-----------PGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~---~~~~~~yg~~t~ 155 (360)
T PRK00366 107 IN-----------PGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLE---KDLLEKYGEPTP 155 (360)
T ss_pred EC-----------CCCCCchHHHHHHHHHHHHHCCCCEEEecCCccCh---HHHHHHcCCCCH
Confidence 22 4565 34566677776554 4567766554 333333455544
No 302
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=88.52 E-value=8.5 Score=34.58 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCC-----------ccCHHHHHHHHHHHHHhcCC---CeEEEe-----e-cCCcC
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIG-----------VGTPGTMRLMLEDVLTVIPA---DRLAVH-----C-HDTYG 227 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G-----------~~~P~~~~~~~~~~~~~~~~---~~l~~H-----~-Hn~~g 227 (327)
.+.+.+.+.++.+.+.|+..|.|-|..+ ++++++..+.++..++...+ ..|-.- . .+..-
T Consensus 81 g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~ 160 (243)
T cd00377 81 GNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLD 160 (243)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHH
Confidence 3667888999999999999999977653 56888888888888887653 333322 1 13444
Q ss_pred cHHHHHHHHHHhcCceeee
Q psy12516 228 QALANILTAMEFGISVFDS 246 (327)
Q Consensus 228 ~a~an~l~a~~~G~~~vd~ 246 (327)
-++.-+.++.++|||.+-.
T Consensus 161 eai~Ra~ay~~AGAD~v~v 179 (243)
T cd00377 161 EAIERAKAYAEAGADGIFV 179 (243)
T ss_pred HHHHHHHHHHHcCCCEEEe
Confidence 5788888999999987653
No 303
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=88.50 E-value=19 Score=32.67 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE-EecCCCCc-------cCHHHHHH
Q psy12516 133 ESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI-SLGDTIGV-------GTPGTMRL 204 (327)
Q Consensus 133 e~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i-~l~Dt~G~-------~~P~~~~~ 204 (327)
+.++.++++++++++.|+.+. +..........-.+++.+.++.+.+- +-+.+ ..-|+.-. .+|++..+
T Consensus 120 ~~~~~l~~l~~~a~~~gi~l~--lEn~~~~~~~~~~t~~~~~~li~~v~--~~~~~g~~lD~~h~~~~g~~~~~~~~~~~ 195 (279)
T cd00019 120 RVIEALNELIDKAETKGVVIA--LETMAGQGNEIGSSFEELKEIIDLIK--EKPRVGVCIDTCHIFAAGYDISTVEGFEK 195 (279)
T ss_pred HHHHHHHHHHHhccCCCCEEE--EeCCCCCCCCCCCCHHHHHHHHHhcC--CCCCeEEEEEhhhHHhccCCCCCHHHHHH
Confidence 346778888888889998764 44422111001245566666665553 02222 23344332 13455777
Q ss_pred HHHHHHHhcCC-CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCC-CCCC
Q psy12516 205 MLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGI-ETGA 282 (327)
Q Consensus 205 ~~~~~~~~~~~-~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~-~~~~ 282 (327)
.+..+.+.++. -...+|.||..+... + . +.+...+| .|..+..+++..|++.|| +..+
T Consensus 196 ~l~~~~~~i~~~~i~~vHikD~~~~~~---------~---------~-~~~~~~~G-~G~id~~~~l~~L~~~~y~~g~~ 255 (279)
T cd00019 196 VLEEFDKVIGLEYLKAIHLNDSKGELG---------S---------G-KDRHEPIG-EGDIDGEELFKELKKDPYQNIPL 255 (279)
T ss_pred HHHHHHHHhChhheeEEEEEcCCCccc---------C---------C-CccccCCC-CCCcCCHHHHHHHHhCcccCCCE
Confidence 77777766532 247899999763210 0 0 00122233 688999999999999888 5443
Q ss_pred C---------hhhHHHHHHHHH
Q psy12516 283 D---------LTSLLRTGHYIC 295 (327)
Q Consensus 283 d---------~~~l~~~~~~~~ 295 (327)
- ...+.+..++++
T Consensus 256 ~lE~~~~~~~~~~~~~~~~~~~ 277 (279)
T cd00019 256 ILETPSENRDAAKIKKEIKLLR 277 (279)
T ss_pred EEeCCCCCccchhHHHHHHHHh
Confidence 2 335555555554
No 304
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=88.46 E-value=7.4 Score=35.90 Aligned_cols=101 Identities=15% Similarity=0.059 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE-EecCCCC-ccCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI-SLGDTIG-VGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i-~l~Dt~G-~~~P~~~~~~~~~~~~~~~ 214 (327)
.++++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+...| .+....- .+....+..++..+.++.+
T Consensus 5 ~~~~~l~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~ 74 (284)
T PRK12737 5 STKNMLKKAQAEGYAVPA-----FN-----IHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYN 74 (284)
T ss_pred cHHHHHHHHHHcCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCC
Confidence 366788899999987642 32 2577899999999999987744 4433221 2334556666777776664
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeecccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIAG 250 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~G 250 (327)
+|+.+| =|-|........|+++|.+- +|+|-..
T Consensus 75 -VPValH--LDH~~~~e~i~~ai~~GftSVMiDgS~lp 109 (284)
T PRK12737 75 -IPLALH--LDHHEDLDDIKKKVRAGIRSVMIDGSHLS 109 (284)
T ss_pred -CCEEEE--CCCCCCHHHHHHHHHcCCCeEEecCCCCC
Confidence 577765 46676788999999999874 5877653
No 305
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=88.42 E-value=19 Score=32.75 Aligned_cols=148 Identities=22% Similarity=0.278 Sum_probs=75.1
Q ss_pred HHHHHHHcCcCEEEecCCccccC----------HHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 3 VASALYKMGCYEISLGDTIGVGT----------PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~~~----------p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
.|+.+.++|+|.|.+.||.|+-. .+++....+.+++..|..- -..|
T Consensus 28 ~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~------------------------vv~D 83 (261)
T PF02548_consen 28 SARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAF------------------------VVAD 83 (261)
T ss_dssp HHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSE------------------------EEEE
T ss_pred HHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCce------------------------EEec
Confidence 46778899999999999995432 4555556677777766311 1112
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV 152 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v 152 (327)
+. ++ +-+.+.|+-+....+...+.|.|.+.+-... ...+.++...+.|+.|
T Consensus 84 --mP-f~--------sy~~s~e~av~nA~rl~ke~GadaVKlEGg~------------------~~~~~i~~l~~~GIPV 134 (261)
T PF02548_consen 84 --MP-FG--------SYQASPEQAVRNAGRLMKEAGADAVKLEGGA------------------EIAETIKALVDAGIPV 134 (261)
T ss_dssp -----TT--------SSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG------------------GGHHHHHHHHHTT--E
T ss_pred --CC-cc--------cccCCHHHHHHHHHHHHHhcCCCEEEeccch------------------hHHHHHHHHHHCCCcE
Confidence 11 11 1123445444444444444555555543221 1234455556667777
Q ss_pred EEEEeee------cc-CCCCCCC--ChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHH
Q psy12516 153 RGYISCV------VG-CPYEGAV--PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLED 208 (327)
Q Consensus 153 ~~~l~~~------~g-~~~~~r~--~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~ 208 (327)
.+.+... +| .--.+|. +...+.+-++.+.++|+-.|.|- ..|.++.+.+..
T Consensus 135 ~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE-----~vp~~la~~It~ 194 (261)
T PF02548_consen 135 MGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLE-----CVPAELAKAITE 194 (261)
T ss_dssp EEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEE-----SBBHHHHHHHHH
T ss_pred EEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeee-----cCHHHHHHHHHH
Confidence 6665431 00 0001122 33456677777888888887763 457777766554
No 306
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=88.34 E-value=15 Score=33.04 Aligned_cols=89 Identities=13% Similarity=0.182 Sum_probs=61.0
Q ss_pred cCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCC---CCCCChHHHHHHHHHHHHc
Q psy12516 107 CGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY---EGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 107 ~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~---~~r~~~e~l~~~~~~~~~~ 183 (327)
.|++++.+..+=.+ +-.....++..+.|++|..... ++.++ ..+.+++.+.+.++.+...
T Consensus 118 lg~~RIalvTPY~~---------------~v~~~~~~~l~~~G~eV~~~~~--~~~~~~~~ia~i~p~~i~~~~~~~~~~ 180 (239)
T TIGR02990 118 LGVRRISLLTPYTP---------------ETSRPMAQYFAVRGFEIVNFTC--LGLTDDREMARISPDCIVEAALAAFDP 180 (239)
T ss_pred cCCCEEEEECCCcH---------------HHHHHHHHHHHhCCcEEeeeec--cCCCCCceeeecCHHHHHHHHHHhcCC
Confidence 47777776655322 2344556778889999864323 44432 3478999999999988888
Q ss_pred CcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeE
Q psy12516 184 GCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRL 218 (327)
Q Consensus 184 g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l 218 (327)
++|.|.++.|. ....+++..+-+.++. |+
T Consensus 181 ~aDAifisCTn-----Lrt~~vi~~lE~~lGk-PV 209 (239)
T TIGR02990 181 DADALFLSCTA-----LRAATCAQRIEQAIGK-PV 209 (239)
T ss_pred CCCEEEEeCCC-----chhHHHHHHHHHHHCC-CE
Confidence 99999998763 4556677777776653 44
No 307
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=88.20 E-value=6.6 Score=35.63 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=52.8
Q ss_pred CCCC-CChHHHHHHHHHHHHcCcCEEEecC-CC--C--ccCHH-H---HHHHHHHHHHhcCCCeEEEeecCCcCcHHHHH
Q psy12516 164 YEGA-VPPHNVTRVATALYKMGCYEISLGD-TI--G--VGTPG-T---MRLMLEDVLTVIPADRLAVHCHDTYGQALANI 233 (327)
Q Consensus 164 ~~~r-~~~e~l~~~~~~~~~~g~~~i~l~D-t~--G--~~~P~-~---~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~ 233 (327)
+.++ .+++...+.+++..+.|++.|-+.- ++ | ..+|+ + +...++.+++.+ +++|.+|+++.. ..
T Consensus 15 dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT~~~~-----vi 88 (257)
T TIGR01496 15 DGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDTYRAE-----VA 88 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCCCHH-----HH
Confidence 3444 4789999999999999999998841 11 1 12333 3 555556666544 478999999864 34
Q ss_pred HHHHHhcCceeee
Q psy12516 234 LTAMEFGISVFDS 246 (327)
Q Consensus 234 l~a~~~G~~~vd~ 246 (327)
.+|+++|++.|..
T Consensus 89 ~~al~~G~~iINs 101 (257)
T TIGR01496 89 RAALEAGADIIND 101 (257)
T ss_pred HHHHHcCCCEEEE
Confidence 5677889998863
No 308
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=88.09 E-value=7 Score=36.84 Aligned_cols=44 Identities=27% Similarity=0.296 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC-CCChHHHHHHHHHHHHcCcCEEEecC
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEG-AVPPHNVTRVATALYKMGCYEISLGD 192 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~-r~~~e~l~~~~~~~~~~g~~~i~l~D 192 (327)
+..+.++.+.+++.|.++.+ |.+ +++. ++++ +..+|+|.+.+..
T Consensus 199 ltAV~~~a~~a~~~gvpiIA---------DGGi~~sG----DI~K-AlaaGAd~VMlGs 243 (346)
T PRK05096 199 LSAVIECADAAHGLGGQIVS---------DGGCTVPG----DVAK-AFGGGADFVMLGG 243 (346)
T ss_pred HHHHHHHHHHHHHcCCCEEe---------cCCccccc----HHHH-HHHcCCCEEEeCh
Confidence 66778888899999988742 333 4443 3333 3348999987643
No 309
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=88.09 E-value=25 Score=33.52 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=77.0
Q ss_pred CChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----C------CCChHHHHHHHHHHH-HcCcC--EEEecCCCC
Q psy12516 129 CTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----G------AVPPHNVTRVATALY-KMGCY--EISLGDTIG 195 (327)
Q Consensus 129 ~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----~------r~~~e~l~~~~~~~~-~~g~~--~i~l~Dt~G 195 (327)
.+.+|+++..++++++|+..|+.|++-|...-|.++. . .++|++..++++..- ..|+| .+.+.-..|
T Consensus 146 lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG 225 (357)
T TIGR01520 146 EPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHG 225 (357)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccC
Confidence 4568899999999999999999999888765444442 1 368888877776552 33777 455656777
Q ss_pred ccC---HHHHHHHHHHH----HHhcCCCe------EEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 196 VGT---PGTMRLMLEDV----LTVIPADR------LAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 196 ~~~---P~~~~~~~~~~----~~~~~~~~------l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.-. |.=-.++++.+ ++.. ++| |.+|. --|..-.....|++.|+..|..
T Consensus 226 ~Yk~~~p~Ld~d~L~~I~~~~~~~~-~vP~~~~~pLVLHG--gSGi~~e~i~kai~~GI~KINi 286 (357)
T TIGR01520 226 VYKPGNVKLTPDILADGQEYVSEKL-GLPAAKPLFFVFHG--GSGSTKQEIKEALSYGVVKMNI 286 (357)
T ss_pred CcCCCCCccCHHHHHHHHHHHHHhc-CCCcCCCCcEEEeC--CCCCCHHHHHHHHHCCCeEEEe
Confidence 543 32223344444 3333 233 66655 4566778889999999987654
No 310
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=88.08 E-value=6.1 Score=39.49 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
.+.++.+.++|+|.|.+--+.| -++ ...+.++.+++.+|+++|.. -.......+..++++|+|.|.+++.
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G-~s~-~~~~~i~~ik~~~~~~~v~a----G~V~t~~~a~~~~~aGad~I~vg~g 312 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQG-NSI-YQIDMIKKLKSNYPHVDIIA----GNVVTADQAKNLIDAGADGLRIGMG 312 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCC-Cch-HHHHHHHHHHhhCCCceEEE----CCcCCHHHHHHHHHcCCCEEEECCc
Confidence 7788889999999998744333 223 34678999999998888877 1122346788899999999987543
No 311
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.03 E-value=18 Score=35.76 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEE
Q psy12516 135 LERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 135 i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~ 189 (327)
.+.+.+.++.+++. |+.+...+. +|.|.+ +.+.+.+.++.+.+.+.+.+.
T Consensus 289 ~e~~~~~i~~lr~~~pgi~i~~d~I--vG~PgE---T~ed~~~ti~~l~~l~~~~v~ 340 (459)
T PRK14338 289 VARYRELIARIREAIPDVSLTTDII--VGHPGE---TEEQFQRTYDLLEEIRFDKVH 340 (459)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHHcCCCEeE
Confidence 44566677777776 666555444 555654 677888888888888887654
No 312
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=88.02 E-value=22 Score=32.79 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC-EEEecCCCCccCH-HHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY-EISLGDTIGVGTP-GTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~-~i~l~Dt~G~~~P-~~~~~~~~~~~~~~~ 214 (327)
.++++++.|++.|+-|-+ |. -++.+.+..+.+.+.+.+.. .|.+....-...| +.+..++....+...
T Consensus 5 ~~~~~l~~A~~~~yaV~A-----fn-----~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~ 74 (281)
T PRK06806 5 QMKELLKKANQENYGVGA-----FS-----VANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAK 74 (281)
T ss_pred cHHHHHHHHHHCCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCC
Confidence 467788999999998753 32 26788999999999998876 4445443322233 345556665555553
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHH
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVY 271 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~ 271 (327)
+|+.+|. |.|........|+++|++.|.. |..+.+.++.+.
T Consensus 75 -vpv~lHl--DH~~~~e~i~~Al~~G~tsVm~-------------d~s~~~~~eni~ 115 (281)
T PRK06806 75 -VPVAVHF--DHGMTFEKIKEALEIGFTSVMF-------------DGSHLPLEENIQ 115 (281)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHcCCCEEEE-------------cCCCCCHHHHHH
Confidence 5777655 5577788899999999998754 455666666654
No 313
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=88.00 E-value=11 Score=34.63 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEecCccc-hHHHHHHHHH------HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHH
Q psy12516 26 PGTMRLMLEDVLTVIPADRLAVHCHDTYG-QALANILTAM------EFGISVFDSSIAGLGGCPYARGASGNVATEDLVY 98 (327)
Q Consensus 26 p~~~~~~~~~~~~~~~~~~~~~H~h~~~g-~~~~~~~~a~------~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~ 98 (327)
+.++++....+++.++....-.-|.+... -|-.+.+..+ +.|+--+. ++ --| -.-++++++
T Consensus 66 ~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TNTyApvevLre~ye~aL~~~~VVGLs--Ig---TRP-------DClpd~Vld 133 (312)
T COG1242 66 AEQFKEQAERMHKKWKRGKYIAYFQAYTNTYAPVEVLREMYEQALSEAGVVGLS--IG---TRP-------DCLPDDVLD 133 (312)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeccccccCcHHHHHHHHHHHhCcCCeeEEe--ec---CCC-------CCCcHHHHH
Confidence 44577778888888876444443333222 1334444443 23433333 22 111 123677777
Q ss_pred Hhhhh------hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHH
Q psy12516 99 MLEGK------SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHN 172 (327)
Q Consensus 99 ~l~~~------~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~ 172 (327)
.|... .++.|+...+ .....++|-+-+ +.-..+.+..+++.|++|+..+. +|-|-+ +.++
T Consensus 134 lL~e~~~r~~vWvELGLQT~h-----~~Tlk~iNRgHd----~~~y~dav~r~rkrgIkvc~HiI--~GLPgE---~~~~ 199 (312)
T COG1242 134 LLAEYNKRYEVWVELGLQTAH-----DKTLKRINRGHD----FACYVDAVKRLRKRGIKVCTHLI--NGLPGE---TRDE 199 (312)
T ss_pred HHHHHhhheEEEEEeccchhh-----HHHHHHHhcccc----hHHHHHHHHHHHHcCCeEEEEEe--eCCCCC---CHHH
Confidence 77653 3334444332 122222332222 45577888999999999987766 455643 5678
Q ss_pred HHHHHHHHHHcCcCEEEe
Q psy12516 173 VTRVATALYKMGCYEISL 190 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l 190 (327)
..+.++.+.+.|++.|-|
T Consensus 200 mleTak~v~~~~v~GIKl 217 (312)
T COG1242 200 MLETAKIVAELGVDGIKL 217 (312)
T ss_pred HHHHHHHHHhcCCceEEE
Confidence 888899999999986543
No 314
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.94 E-value=21 Score=32.60 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCC
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTI 194 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~ 194 (327)
.+.+++.++++.+.+.|+|.|.+..+.
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 456678888888889999988876553
No 315
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=87.89 E-value=17 Score=34.03 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc-CcCEEEecCCCCccCHHHHHHHHHHHHHh-c
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM-GCYEISLGDTIGVGTPGTMRLMLEDVLTV-I 213 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~-~ 213 (327)
+.+..+++.+.+.|+... .+. -|-|. -...+.++++.+.+. |...+.+ .|.|.+.++. +..+++. +
T Consensus 46 eei~~~i~~~~~~gv~~V-~lt--GGEPl----l~~~l~~li~~i~~~~gi~~v~i-tTNG~ll~~~----~~~L~~~gl 113 (334)
T TIGR02666 46 EEIERLVRAFVGLGVRKV-RLT--GGEPL----LRKDLVELVARLAALPGIEDIAL-TTNGLLLARH----AKDLKEAGL 113 (334)
T ss_pred HHHHHHHHHHHHCCCCEE-EEE--Ccccc----ccCCHHHHHHHHHhcCCCCeEEE-EeCchhHHHH----HHHHHHcCC
Confidence 334556666666675421 121 13232 112355666665553 4544554 5677666542 3344432 2
Q ss_pred CCCeEEEeec
Q psy12516 214 PADRLAVHCH 223 (327)
Q Consensus 214 ~~~~l~~H~H 223 (327)
..+.|+++..
T Consensus 114 ~~v~ISld~~ 123 (334)
T TIGR02666 114 KRVNVSLDSL 123 (334)
T ss_pred CeEEEecccC
Confidence 2345555543
No 316
>PRK08185 hypothetical protein; Provisional
Probab=87.79 E-value=17 Score=33.50 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE-EecCCCCccCHHHHHHHHHHHHHhcCCCe
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI-SLGDTIGVGTPGTMRLMLEDVLTVIPADR 217 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i-~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~ 217 (327)
++++..|++.++-|-+ |. -++.+.+..+.+.+.+.+...| .+....-...|..+..++..+.+... +|
T Consensus 2 ~~~L~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~-vP 70 (283)
T PRK08185 2 KELLKVAKEHQFAVGA-----FN-----VADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSP-VP 70 (283)
T ss_pred HHHHHHHHHcCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCC-CC
Confidence 4567889998887742 31 2678899999999999988754 44332222234556666766666654 57
Q ss_pred EEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 218 LAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 218 l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+.+| =|-|........|+++|.+- +|.|-.
T Consensus 71 V~lH--LDHg~~~e~i~~ai~~Gf~SVM~D~S~l 102 (283)
T PRK08185 71 FVIH--LDHGATIEDVMRAIRCGFTSVMIDGSLL 102 (283)
T ss_pred EEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 6664 56677788899999999764 565433
No 317
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=87.63 E-value=23 Score=32.57 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=75.5
Q ss_pred HHHHHHHHcCcCEEEecCCccc-----cCHHHHHHHH-HHHHhhc-----CCCeeEEEecCccchHHHHHHHHH-HcCCc
Q psy12516 2 KVASALYKMGCYEISLGDTIGV-----GTPGTMRLML-EDVLTVI-----PADRLAVHCHDTYGQALANILTAM-EFGIS 69 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~-----~~p~~~~~~~-~~~~~~~-----~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~ 69 (327)
++++.+.++|++.|.+.|..+. .+|...++++ ..+++.. ++.++.+|..-+. ...+..+ +.|++
T Consensus 148 ~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~~----~~~~~~l~~~~~d 223 (306)
T cd00465 148 EYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCYDA----ADLLEEMIQLGVD 223 (306)
T ss_pred HHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECCCH----HHHHHHHHHhCcc
Confidence 5677888999999999997643 4787776653 3333322 2346666666443 3345555 67887
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhh-hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLE-GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~-~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
.+..-..- + +..++...+. +..+.-|++... +..+.++..+.++++++....
T Consensus 224 ~~~~d~~~-~------------d~~~~~~~~~~~~~i~Ggv~~~~-------------~~~~~e~i~~~v~~~l~~~~~- 276 (306)
T cd00465 224 VISFDMTV-N------------EPKEAIEKVGEKKTLVGGVDPGY-------------LPATDEECIAKVEELVERLGP- 276 (306)
T ss_pred eEeccccc-C------------CHHHHHHHhCCCEEEECCCCccc-------------cCCCHHHHHHHHHHHHHHhCC-
Confidence 76522211 0 2223333222 123333444331 123445667777777776533
Q ss_pred CCeEEEEEeeeccCCCCCCCCh--HHHHHHHHHH
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPP--HNVTRVATAL 180 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~--e~l~~~~~~~ 180 (327)
|.-+ ..+|......++ +.+..+.+.+
T Consensus 277 ~~il------~~~cgi~~~~~~~~enl~a~v~a~ 304 (306)
T cd00465 277 HYII------NPDCGLGPDSDYKPEHLRAVVQLV 304 (306)
T ss_pred CeEE------eCCCCCCCCCCCcHHHHHHHHHHh
Confidence 3211 134444434455 7777666654
No 318
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=87.61 E-value=18 Score=35.47 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=52.4
Q ss_pred HHHHHHHhhhhhcccCcchhhh-hhhhhHHHHH-HhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCh
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAV-FASASEMFSK-RNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPP 170 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~~~-~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~ 170 (327)
.++++..|.+.+ .|+..+++ +.+.|+...+ .+-+.+ .+.+.+.++.+++.|..+......++|.|.+ +.
T Consensus 233 ~~ell~~l~~~~--~g~~~l~igvQSgs~~vLk~m~R~~~----~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgE---t~ 303 (440)
T PRK14334 233 TDDVIAAMAETP--AVCEYIHLPVQSGSDRVLRRMAREYR----REKYLERIAEIREALPDVVLSTDIIVGFPGE---TE 303 (440)
T ss_pred CHHHHHHHHhcC--cCCCeEEeccccCCHHHHHHhCCCCC----HHHHHHHHHHHHHhCCCcEEEEeEEEECCCC---CH
Confidence 355666665421 34555555 3344444332 222233 3456677888888877654445556676754 67
Q ss_pred HHHHHHHHHHHHcCcCEEE
Q psy12516 171 HNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~ 189 (327)
+.+.+..+.+.+.+++.+.
T Consensus 304 ed~~~tl~~i~~l~~~~i~ 322 (440)
T PRK14334 304 EDFQETLSLYDEVGYDSAY 322 (440)
T ss_pred HHHHHHHHHHHhcCCCEee
Confidence 7888888888888887554
No 319
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=87.56 E-value=9.1 Score=36.29 Aligned_cols=100 Identities=15% Similarity=0.188 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE-EecCCCC-ccCHHHHHHHHHHHHHhcCC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI-SLGDTIG-VGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i-~l~Dt~G-~~~P~~~~~~~~~~~~~~~~ 215 (327)
++++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+...| .+.-..- .+....+..++..+.+..+.
T Consensus 4 ~k~iL~~A~~~~yAV~A-----fN-----~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~ 73 (347)
T TIGR01521 4 MRQLLDHAAEFGYGVPA-----FN-----VNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPH 73 (347)
T ss_pred HHHHHHHHHHcCceEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCC
Confidence 56778899999997742 32 2578899999999999987754 3333221 23335567777777776655
Q ss_pred CeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 216 DRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+|+.+| =|-|........|+++|.+- +|+|-.
T Consensus 74 VPValH--LDHg~~~e~i~~Ai~~GFtSVMiDgS~l 107 (347)
T TIGR01521 74 IPVVMH--QDHGNSPATCQRAIQLGFTSVMMDGSLR 107 (347)
T ss_pred CcEEEE--CCCCCCHHHHHHHHHcCCCEEeecCcCC
Confidence 677765 46677788999999999875 699853
No 320
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=87.54 E-value=13 Score=34.63 Aligned_cols=100 Identities=15% Similarity=0.048 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEE-ecCCC-CccCHHHHHHHHHHHHHhcCC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEIS-LGDTI-GVGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~-l~Dt~-G~~~P~~~~~~~~~~~~~~~~ 215 (327)
+++++..|++.++-|-+ |. -++.+.+..+.+.+.+.+...|. +.... ..+.+..+..++..+.+..+.
T Consensus 5 ~k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~ 74 (307)
T PRK05835 5 GNEILLKAHKEGYGVGA-----FN-----FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH 74 (307)
T ss_pred HHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCC
Confidence 56778899999987642 31 26789999999999999877543 33322 123345566667767666654
Q ss_pred CeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 216 DRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+|+.+| =|-|.....+..|+++|.+- +|+|-.
T Consensus 75 VPValH--LDHg~~~e~i~~ai~~GftSVM~DgS~l 108 (307)
T PRK05835 75 IPVALH--LDHGTTFESCEKAVKAGFTSVMIDASHH 108 (307)
T ss_pred CeEEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 677765 46677788899999999864 587764
No 321
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=87.41 E-value=20 Score=31.73 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh--cC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV--IP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~--~~ 214 (327)
...++++.+++.+.++-+ ++.. +..--+.+.+.+..+++.+.|+|.+.++-+. -++.++.+++....+. .+
T Consensus 106 ~~~~l~~~~~~~~~kvI~--S~H~---f~~tp~~~~l~~~~~~~~~~gaDivKia~~a--~~~~D~~~ll~~~~~~~~~~ 178 (228)
T TIGR01093 106 AVKELINIAKKGGTKIIM--SYHD---FQKTPSWEEIVERLEKALSYGADIVKIAVMA--NSKEDVLTLLEITNKVDEHA 178 (228)
T ss_pred HHHHHHHHHHHCCCEEEE--eccC---CCCCCCHHHHHHHHHHHHHhCCCEEEEEecc--CCHHHHHHHHHHHHHHHhcC
Confidence 356677778888887653 3321 1212344678899999999999998887663 3466777777655432 23
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHH
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYM 272 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~ 272 (327)
..|+..-.=-..|. ..-+.+-..|--..=+++ |. | .+.|+.+++++...
T Consensus 179 ~~p~i~~~MG~~G~--~SRil~~~~gs~~t~~~~---~~-~---sApGQ~~~~~l~~~ 227 (228)
T TIGR01093 179 DVPLITMSMGDRGK--ISRVLGAVFGSVLTFGSL---GK-A---SAPGQISVDDLREL 227 (228)
T ss_pred CCCEEEEeCCCCCh--hHhhccccccccceeccC---CC-C---CCCCCcCHHHHHhh
Confidence 44555433223332 222333344443322332 33 2 25679999987653
No 322
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=87.36 E-value=10 Score=35.69 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
...+.++.+.+.|++.|.+.=+.| .+....++++.+++..|++++.. .|- .....+..++++|+|.|.+++
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~p~v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKYPNVDVIA--GNV--VTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHCCCceEEE--CCC--CCHHHHHHHHhcCCCEEEECC
Confidence 345678888899999887744444 34677889999999888666665 222 334667888899999998754
No 323
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=87.21 E-value=6.5 Score=37.41 Aligned_cols=212 Identities=16% Similarity=0.155 Sum_probs=110.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
+.++.+.++|+|.|.+ |++=.-+. .+.+.++.+++.+|++++-.--.-+... +..-+++|++.|-++++ .
T Consensus 111 er~~~L~~agvD~ivI-D~a~g~s~-~~~~~ik~ik~~~~~~~viaGNV~T~e~----a~~L~~aGad~vkVGiG---p- 180 (352)
T PF00478_consen 111 ERAEALVEAGVDVIVI-DSAHGHSE-HVIDMIKKIKKKFPDVPVIAGNVVTYEG----AKDLIDAGADAVKVGIG---P- 180 (352)
T ss_dssp HHHHHHHHTT-SEEEE-E-SSTTSH-HHHHHHHHHHHHSTTSEEEEEEE-SHHH----HHHHHHTT-SEEEESSS---S-
T ss_pred HHHHHHHHcCCCEEEc-cccCccHH-HHHHHHHHHHHhCCCceEEecccCCHHH----HHHHHHcCCCEEEEecc---C-
Confidence 5788899999998855 55532333 3446788999999987776655555432 23345899999887654 2
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVG 161 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g 161 (327)
|-.++-..+ +|+-. +| +..+.++.+.+++.++++.+
T Consensus 181 -------GsiCtTr~v---------~GvG~--------------------PQ-~tAv~~~a~~a~~~~v~iIA------- 216 (352)
T PF00478_consen 181 -------GSICTTREV---------TGVGV--------------------PQ-LTAVYECAEAARDYGVPIIA------- 216 (352)
T ss_dssp -------STTBHHHHH---------HSBSC--------------------TH-HHHHHHHHHHHHCTTSEEEE-------
T ss_pred -------Ccccccccc---------cccCC--------------------cH-HHHHHHHHHHhhhccCceee-------
Confidence 334443221 22221 12 45567778888888988752
Q ss_pred CCCCC-CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEE----EeecCCcCcHHHHHHHH
Q psy12516 162 CPYEG-AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLA----VHCHDTYGQALANILTA 236 (327)
Q Consensus 162 ~~~~~-r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~----~H~Hn~~g~a~an~l~a 236 (327)
|.+ +++. ++++ +..+|+|.+.+.-..-. -. +.|. ++. .+.+.-+||+...++..
T Consensus 217 --DGGi~~sG----Di~K-Ala~GAd~VMlG~llAg------------t~-EsPG-~~~~~~g~~~K~yrGMgS~~A~~~ 275 (352)
T PF00478_consen 217 --DGGIRTSG----DIVK-ALAAGADAVMLGSLLAG------------TD-ESPG-EVIYIDGKRYKKYRGMGSLGAMKK 275 (352)
T ss_dssp --ESS-SSHH----HHHH-HHHTT-SEEEESTTTTT------------BT-TSSS-EEEEETTEEEEEEEETTSHHHHHH
T ss_pred --cCCcCccc----ceee-eeeecccceeechhhcc------------Cc-CCCC-ceEEECCeEEEEecccccHHHHhh
Confidence 233 3333 3333 44589999976543221 11 2344 222 24455579996555544
Q ss_pred HHhcCceeeeccccCCCCCCCCCC----CCCccHHHHHHHH----Hh-CCCCCCCChhhHHHHH
Q psy12516 237 MEFGISVFDSSIAGLGGCPYARGA----SGNVATEDLVYML----EG-MGIETGADLTSLLRTG 291 (327)
Q Consensus 237 ~~~G~~~vd~s~~G~G~~p~~~g~----~Gn~~~e~~~~~l----~~-~g~~~~~d~~~l~~~~ 291 (327)
-..+.++....-. .+ ..+.|. .---++++++..| +. ++|--.-++..|.+-+
T Consensus 276 ~~~~~~ry~~~~~--~~-~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 276 RRGSGDRYFQAED--KK-FVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp HSTTGCTCTSSTS--ST-SSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred ccccchhcccccc--cc-ccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 2234444311100 00 001111 1234566666544 33 4443345677776655
No 324
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=87.21 E-value=23 Score=32.19 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=53.9
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
+...+.|+|.+.+.+- . ++...++++.+++.|+.... +.+| .++.+.+..+.+
T Consensus 111 ~~~~~aGvdGviipDL------------p----~ee~~~~~~~~~~~gl~~I~-----lvap---~t~~eri~~i~~--- 163 (258)
T PRK13111 111 ADAAEAGVDGLIIPDL------------P----PEEAEELRAAAKKHGLDLIF-----LVAP---TTTDERLKKIAS--- 163 (258)
T ss_pred HHHHHcCCcEEEECCC------------C----HHHHHHHHHHHHHcCCcEEE-----EeCC---CCCHHHHHHHHH---
Confidence 3455677777665421 1 45678889999999998642 1122 234444444433
Q ss_pred HcCcCEEEe---cCCCCc--cCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 182 KMGCYEISL---GDTIGV--GTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 182 ~~g~~~i~l---~Dt~G~--~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
....-||+ .-++|. ..|..+.++++.+|+.. ++|+-+
T Consensus 164 -~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~v 205 (258)
T PRK13111 164 -HASGFVYYVSRAGVTGARSADAADLAELVARLKAHT-DLPVAV 205 (258)
T ss_pred -hCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEEE
Confidence 33344444 344554 55778899999999865 345554
No 325
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=87.20 E-value=25 Score=32.60 Aligned_cols=197 Identities=15% Similarity=0.138 Sum_probs=102.2
Q ss_pred ecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHH---HH-HcCCcEEEecccCCCCCCCCCCccCCCc
Q psy12516 17 LGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT---AM-EFGISVFDSSIAGLGGCPYARGASGNVA 92 (327)
Q Consensus 17 ~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~---a~-~aG~~~id~~~~glg~~p~~~~~~gn~~ 92 (327)
++|. |..+..++...++.+.+..+ +|+..-.=+-+| ...|+.. .+ ++|+.-|..-=.-.-. +.|+..
T Consensus 55 ~PD~-g~l~~~e~~~~~~~I~~~~~-iPviaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~pK------~cg~~~ 125 (292)
T PRK11320 55 LPDL-GITTLDDVLIDVRRITDACD-LPLLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVGAK------RCGHRP 125 (292)
T ss_pred CCCC-CCCCHHHHHHHHHHHHhccC-CCEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCCcc------ccCCCC
Confidence 4443 57777788888888877765 788888877777 5566532 22 5777655422111000 112111
Q ss_pred HHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC-CCCChH
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE-GAVPPH 171 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~-~r~~~e 171 (327)
...+ .+.++..++++.+.+..+ +..+.++-. .|. .....+
T Consensus 126 ~~~l--------------------------------v~~ee~~~kI~Aa~~a~~--~~d~~IiAR-----TDa~~~~g~d 166 (292)
T PRK11320 126 NKEI--------------------------------VSQEEMVDRIKAAVDART--DPDFVIMAR-----TDALAVEGLD 166 (292)
T ss_pred CCcc--------------------------------cCHHHHHHHHHHHHHhcc--CCCeEEEEe-----cCcccccCHH
Confidence 0000 012223444443333322 333222111 111 123456
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc-HHHHHHHHHHhcCceeeecccc
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ-ALANILTAMEFGISVFDSSIAG 250 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~-a~an~l~a~~~G~~~vd~s~~G 250 (327)
+.++-++...++|+|.|.+. |.-+++++.++.+.+ + .|+-+-.-. +|. ..-+.-..-+.|+++|-.....
T Consensus 167 eAI~Ra~aY~eAGAD~ifi~---~~~~~~~i~~~~~~~----~-~Pl~~n~~~-~~~~p~~s~~~L~~lGv~~v~~~~~~ 237 (292)
T PRK11320 167 AAIERAQAYVEAGADMIFPE---AMTELEMYRRFADAV----K-VPILANITE-FGATPLFTTEELASAGVAMVLYPLSA 237 (292)
T ss_pred HHHHHHHHHHHcCCCEEEec---CCCCHHHHHHHHHhc----C-CCEEEEecc-CCCCCCCCHHHHHHcCCcEEEEChHH
Confidence 77777888889999999874 456777777766654 3 345331111 111 1112334456798887654442
Q ss_pred CCCCCCCCCCCCCccHHHHHHHHHhCCC
Q psy12516 251 LGGCPYARGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 251 ~G~~p~~~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
+ ++-...+++.+..+++.|.
T Consensus 238 ~--------~aa~~a~~~~~~~l~~~g~ 257 (292)
T PRK11320 238 F--------RAMNKAAENVYEAIRRDGT 257 (292)
T ss_pred H--------HHHHHHHHHHHHHHHHcCC
Confidence 2 3445566666666666554
No 326
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.18 E-value=4 Score=35.97 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.+++...++++.+.+.|.+.|.+. +-+| ...+.++.+++.+|+..|+.-+=-+. ..+..|+++|++++=+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFIVS 93 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEEEC
Confidence 578999999999999999999886 5556 45667899999999887887554443 6678899999998643
No 327
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=87.12 E-value=8 Score=37.10 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCC-------CCccCHHHHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDT-------IGVGTPGTMRLMLE 207 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt-------~G~~~P~~~~~~~~ 207 (327)
.+.+.+.++..++.+..+. . |.++....++++.+.+.|+|.|.+-.| .|...|..+.++++
T Consensus 118 p~l~~~ii~~vr~a~Vtvk----i--------Rl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~ 185 (369)
T TIGR01304 118 PELLGERIAEVRDSGVITA----V--------RVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIG 185 (369)
T ss_pred hHHHHHHHHHHHhcceEEE----E--------ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHH
Confidence 4556677788888774332 1 345567889999999999999998654 35567876655554
Q ss_pred HHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 208 DVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 208 ~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
. ++ +|+.. .+ -.....++.+++.|++.|.
T Consensus 186 ~----~~-IPVI~---G~-V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 186 E----LD-VPVIA---GG-VNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred H----CC-CCEEE---eC-CCCHHHHHHHHHcCCCEEE
Confidence 3 33 46543 22 3345667888899999987
No 328
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=87.08 E-value=14 Score=34.22 Aligned_cols=100 Identities=15% Similarity=0.056 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEE-ecCCCC-ccCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEIS-LGDTIG-VGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~-l~Dt~G-~~~P~~~~~~~~~~~~~~~ 214 (327)
..+++++.|++.|+-|-+ |. -++.+.+..+.+.+.+.+...|. +....- .+....+..++..+.++..
T Consensus 5 ~~k~iL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK12738 5 STKYLLQDAQANGYAVPA-----FN-----IHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN 74 (286)
T ss_pred cHHHHHHHHHHCCceEEE-----EE-----eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC
Confidence 357788999999997742 32 25788999999999999887544 322211 2334556777777777664
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+|+.+|. |-|........|+++|.+- +|+|-.
T Consensus 75 -VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~l 108 (286)
T PRK12738 75 -MPLALHL--DHHESLDDIRRKVHAGVRSAMIDGSHF 108 (286)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHcCCCeEeecCCCC
Confidence 5777654 6677788899999999864 577654
No 329
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=87.05 E-value=14 Score=34.14 Aligned_cols=62 Identities=18% Similarity=0.039 Sum_probs=46.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEec
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 74 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~ 74 (327)
.-++.+.++|+|.| |-+...+| ..+++...+..+ .+++- ++-. .+..++.+++.|++.|-++
T Consensus 87 ~Ea~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f-~~~fm----ad~~-~l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 87 VEAQILEALGVDYI---DESEVLTP--ADEEYHIDKWDF-TVPFV----CGAR-NLGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HHHHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHc-CCCEE----ccCC-CHHHHHHHHHCCCCeeecc
Confidence 34678999999999 88899999 447788888877 34332 2322 2678899999999999865
No 330
>PRK09234 fbiC FO synthase; Reviewed
Probab=87.03 E-value=7.5 Score=41.43 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=58.8
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCCc---cCHHHHHHHHHHHHHhcCCCeEEEee---------cCCcCcHHHHH
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIGV---GTPGTMRLMLEDVLTVIPADRLAVHC---------HDTYGQALANI 233 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~~~~~~~~~~~~~~~~~l~~H~---------Hn~~g~a~an~ 233 (327)
+..++|++.+.++.+.+.|+.+|++. .|. ...+.+.++++.+|+.+|+ +.+|. -...|+.+.-.
T Consensus 555 y~Ls~eeI~~~a~ea~~~G~tev~i~--gG~~p~~~~~~y~~lir~IK~~~p~--i~i~afsp~Ei~~~a~~~Gl~~~e~ 630 (843)
T PRK09234 555 YTLSLDEVADRAWEAWVAGATEVCMQ--GGIHPELPGTGYADLVRAVKARVPS--MHVHAFSPMEIVNGAARLGLSIREW 630 (843)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEe--cCCCCCcCHHHHHHHHHHHHHhCCC--eeEEecChHHHHHHHHHcCCCHHHH
Confidence 35688999999999999999999998 353 3456777889999998885 44443 24578888888
Q ss_pred HHHH-HhcCceee
Q psy12516 234 LTAM-EFGISVFD 245 (327)
Q Consensus 234 l~a~-~~G~~~vd 245 (327)
+..+ ++|.+.+.
T Consensus 631 l~~LkeAGLds~p 643 (843)
T PRK09234 631 LTALREAGLDTIP 643 (843)
T ss_pred HHHHHHhCcCccC
Confidence 7776 67998775
No 331
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=86.98 E-value=12 Score=34.49 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
...+..+++++.|..... . ..|+-.+.+.+.+.+.++.+.
T Consensus 84 ~~i~la~~a~~~Gad~v~--v---~~P~y~~~~~~~i~~yf~~v~ 123 (290)
T TIGR00683 84 EAVELGKYATELGYDCLS--A---VTPFYYKFSFPEIKHYYDTII 123 (290)
T ss_pred HHHHHHHHHHHhCCCEEE--E---eCCcCCCCCHHHHHHHHHHHH
Confidence 344445555566654221 1 123333445556666655554
No 332
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=86.81 E-value=10 Score=35.79 Aligned_cols=92 Identities=12% Similarity=0.128 Sum_probs=57.7
Q ss_pred HHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCc--CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeE
Q psy12516 141 VVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGC--YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRL 218 (327)
Q Consensus 141 ~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~--~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l 218 (327)
.++..+..++.+.+.+. .+++.+ +-+..+.++|+ |.|.+=-|. ..-..+.++++.+|+.+|+++|
T Consensus 77 ~~r~~~~~~l~v~~~vg----------~~~~~~-~~~~~Lv~ag~~~d~i~iD~a~--gh~~~~~e~I~~ir~~~p~~~v 143 (326)
T PRK05458 77 FIKDMHEQGLIASISVG----------VKDDEY-DFVDQLAAEGLTPEYITIDIAH--GHSDSVINMIQHIKKHLPETFV 143 (326)
T ss_pred HHHhccccccEEEEEec----------CCHHHH-HHHHHHHhcCCCCCEEEEECCC--CchHHHHHHHHHHHhhCCCCeE
Confidence 33555555775443211 334443 55666777854 988874444 3446788999999999998766
Q ss_pred EEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 219 AVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 219 ~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
..=-= + ....+..+.++|++.++.+..
T Consensus 144 i~g~V---~-t~e~a~~l~~aGad~i~vg~~ 170 (326)
T PRK05458 144 IAGNV---G-TPEAVRELENAGADATKVGIG 170 (326)
T ss_pred EEEec---C-CHHHHHHHHHcCcCEEEECCC
Confidence 55100 1 245668888999999775444
No 333
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=86.67 E-value=22 Score=31.48 Aligned_cols=117 Identities=20% Similarity=0.173 Sum_probs=70.2
Q ss_pred HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCCCeEEE--
Q psy12516 146 LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRLAV-- 220 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~~~l~~-- 220 (327)
+..+.++...+.+ |.. ..+.+.-..-++.+.+.|++.|-+.=-.|.. ....+.+-+..+++......+-+
T Consensus 54 ~~~~v~v~tVigF----P~G-~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIl 128 (221)
T PRK00507 54 KGSDVKVCTVIGF----PLG-ANTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVII 128 (221)
T ss_pred CCCCCeEEEEecc----cCC-CChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEe
Confidence 4457777665554 432 3455555555677888999987766555543 24566666777776543333333
Q ss_pred eec--CCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 221 HCH--DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 221 H~H--n~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
-.- ++..+ ..-+..++++|+++|-+|-. ++ .|.+++|.+-.+.+..+
T Consensus 129 Et~~L~~e~i-~~a~~~~~~agadfIKTsTG-~~--------~~gat~~~v~~m~~~~~ 177 (221)
T PRK00507 129 ETCLLTDEEK-VKACEIAKEAGADFVKTSTG-FS--------TGGATVEDVKLMRETVG 177 (221)
T ss_pred ecCcCCHHHH-HHHHHHHHHhCCCEEEcCCC-CC--------CCCCCHHHHHHHHHHhC
Confidence 211 12222 55666789999999887654 33 34588888776666543
No 334
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=86.58 E-value=9.3 Score=33.42 Aligned_cols=125 Identities=18% Similarity=0.302 Sum_probs=73.3
Q ss_pred cHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC-CCCh
Q psy12516 92 ATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG-AVPP 170 (327)
Q Consensus 92 ~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~-r~~~ 170 (327)
..++++..+...+.+.|.-.+|+- . +++++. ++. .-.+.+-+.+.--+ |+.. +.+|
T Consensus 30 ~~~~iv~~mA~Aa~~gGAvgiR~~-g-----------------v~dIka-i~~--~v~vPIIGIiKrd~--~~s~v~ITp 86 (229)
T COG3010 30 DSPEIVAAMALAAEQGGAVGIRIE-G-----------------VEDIKA-IRA--VVDVPIIGIIKRDY--PDSPVRITP 86 (229)
T ss_pred cchhHHHHHHHHHHhCCcceEeec-c-----------------hhhHHH-HHh--hCCCCeEEEEecCC--CCCCceecc
Confidence 344666666677777777766643 1 222222 111 22444444444321 1110 2222
Q ss_pred HHHHHHHHHHHHcCcCEEEecCCCCccCHH-HHHHHHHHHHHhcCCCeEEEeecCCcCcH----HHHHHHHHHhcCceee
Q psy12516 171 HNVTRVATALYKMGCYEISLGDTIGVGTPG-TMRLMLEDVLTVIPADRLAVHCHDTYGQA----LANILTAMEFGISVFD 245 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~-~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a----~an~l~a~~~G~~~vd 245 (327)
..+-.+.+.+.|++.|.+ |-+=.-.|. .+.++++. .+.|+ -+-|| +.-.+.|.++|+|.|-
T Consensus 87 --tlkeVd~L~~~Ga~IIA~-DaT~R~RP~~~~~~~i~~--~k~~~---------~l~MAD~St~ee~l~a~~~G~D~IG 152 (229)
T COG3010 87 --TLKEVDALAEAGADIIAF-DATDRPRPDGDLEELIAR--IKYPG---------QLAMADCSTFEEGLNAHKLGFDIIG 152 (229)
T ss_pred --cHHHHHHHHHCCCcEEEe-ecccCCCCcchHHHHHHH--hhcCC---------cEEEeccCCHHHHHHHHHcCCcEEe
Confidence 234455677899999987 444455666 77777776 22343 33343 5667889999999999
Q ss_pred eccccCCC
Q psy12516 246 SSIAGLGG 253 (327)
Q Consensus 246 ~s~~G~G~ 253 (327)
+|+.|+-+
T Consensus 153 TTLsGYT~ 160 (229)
T COG3010 153 TTLSGYTG 160 (229)
T ss_pred cccccccC
Confidence 99999876
No 335
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=86.51 E-value=31 Score=33.00 Aligned_cols=128 Identities=13% Similarity=0.164 Sum_probs=70.0
Q ss_pred cCEEEecCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccC
Q psy12516 12 CYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGASG 89 (327)
Q Consensus 12 ~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~g 89 (327)
++.|++..-+ -.++|..+.++++.+++. +..++.+-++-+. -....+.++ ++|+.++..++..+..
T Consensus 59 i~~iy~GGGTPs~l~~~~l~~ll~~i~~~-~~~eit~E~~P~~--~~~~~l~~l~~~G~nrislGvQS~~~--------- 126 (370)
T PRK06294 59 IDTVFFGGGTPSLVPPALIQDILKTLEAP-HATEITLEANPEN--LSESYIRALALTGINRISIGVQTFDD--------- 126 (370)
T ss_pred eeEEEECCCccccCCHHHHHHHHHHHHhC-CCCeEEEEeCCCC--CCHHHHHHHHHCCCCEEEEccccCCH---------
Confidence 4567775433 445677788888887653 3344444332221 112334444 4666666655543331
Q ss_pred CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCC
Q psy12516 90 NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAV 168 (327)
Q Consensus 90 n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~ 168 (327)
+++..+ +. +-+ .+.+.+.++.+++.|+. +.+.+ ++|-|. -
T Consensus 127 -----~~L~~l---~R----------------------~~~----~~~~~~ai~~~~~~g~~~v~~Dl--i~GlPg---q 167 (370)
T PRK06294 127 -----PLLKLL---GR----------------------THS----SSKAIDAVQECSEHGFSNLSIDL--IYGLPT---Q 167 (370)
T ss_pred -----HHHHHc---CC----------------------CCC----HHHHHHHHHHHHHcCCCeEEEEe--ecCCCC---C
Confidence 111111 00 011 33456677788888885 55444 355564 3
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe
Q psy12516 169 PPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l 190 (327)
+.+.+.+-.+.+.+.+++.|.+
T Consensus 168 t~~~~~~~l~~~~~l~~~~is~ 189 (370)
T PRK06294 168 SLSDFIVDLHQAITLPITHISL 189 (370)
T ss_pred CHHHHHHHHHHHHccCCCeEEE
Confidence 6777888888888888876554
No 336
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=86.40 E-value=24 Score=31.66 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCcCEEEecC--CCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHH-HHHHHHHHh-cCcee-ee
Q psy12516 172 NVTRVATALYKMGCYEISLGD--TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQAL-ANILTAMEF-GISVF-DS 246 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~D--t~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~-an~l~a~~~-G~~~v-d~ 246 (327)
...+..+.+.+.|++.+.+-| ..|...=.+ .++++.+++..+ +|+..-. |... .-...+++. |++.+ -+
T Consensus 154 ~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d-~~~i~~~~~~~~-ipvia~G----Gv~s~~d~~~~~~~~G~~gvivg 227 (253)
T PRK02083 154 DAVEWAKEVEELGAGEILLTSMDRDGTKNGYD-LELTRAVSDAVN-VPVIASG----GAGNLEHFVEAFTEGGADAALAA 227 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC-HHHHHHHHhhCC-CCEEEEC----CCCCHHHHHHHHHhCCccEEeEh
Confidence 456777888899999988833 445433222 456777776654 4666543 2222 223345544 77543 33
Q ss_pred ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 247 SIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 247 s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
+.. -.|..+++++...|++.|+.+.
T Consensus 228 ~al----------~~~~~~~~~~~~~~~~~~~~~~ 252 (253)
T PRK02083 228 SIF----------HFGEITIGELKAYLAEQGIPVR 252 (253)
T ss_pred HHH----------HcCCCCHHHHHHHHHHCCCccc
Confidence 333 2467999999999998888753
No 337
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=86.29 E-value=7.1 Score=38.88 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
.+.++.+.+.|++.|.+-++.|. +..+.+.++.+++.+|++++.+ -.+.....+..++++|++.|+.+.
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGI 298 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence 67888899999998866555565 4678888999999998878777 234556778899999999999644
No 338
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=86.23 E-value=16 Score=33.21 Aligned_cols=51 Identities=6% Similarity=-0.033 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecCCCC-ccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGDTIG-VGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.+...++++.+.+.|+|.+.+.-..- ..+++++.+.++.+.+.. ++|+.+
T Consensus 77 ~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~-~~pi~i 128 (281)
T cd00408 77 STREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS-DLPVIL 128 (281)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-CCCEEE
Confidence 444556666666666666544433222 234555555555555542 234443
No 339
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=86.13 E-value=11 Score=35.67 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE-EEecCCCC-ccCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE-ISLGDTIG-VGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~-i~l~Dt~G-~~~P~~~~~~~~~~~~~~~ 214 (327)
.+++++..|++.++-|-+ |. -++.+.+..+.+.+.+.+... |.+....- .+....+..++..+.+..+
T Consensus 5 ~~k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~ 74 (347)
T PRK13399 5 TLRQLLDHAAENGYGVPA-----FN-----VNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP 74 (347)
T ss_pred cHHHHHHHHHHCCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC
Confidence 467788999999997742 32 267889999999999998774 44433322 2334567777777777765
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
.+|+.+| =|-|........|+++|.+- +|+|-.
T Consensus 75 ~VPVaLH--LDHg~~~e~i~~Ai~~GFtSVMiDgS~l 109 (347)
T PRK13399 75 DIPICLH--QDHGNSPATCQSAIRSGFTSVMMDGSLL 109 (347)
T ss_pred CCcEEEE--CCCCCCHHHHHHHHhcCCCEEEEeCCCC
Confidence 5677765 46677788899999999875 699965
No 340
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=85.98 E-value=20 Score=35.00 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=51.9
Q ss_pred HHHHHHHhhhhhcccCcchhhh-hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC--CeEEEEEeeeccCCCCCCCC
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAV-FASASEMFSKRNINCTIEESLERFSEVVSTALTNG--IRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G--i~v~~~l~~~~g~~~~~r~~ 169 (327)
.++++.++.+. ..++..+.+ +.+.|+...+. .++. ...+.+.+.++.+++.| +.+...+ ++|.|.+ +
T Consensus 235 ~~ell~~m~~~--~~~~~~l~igiES~s~~vLk~-m~R~--~~~~~~~~~i~~lr~~~~~i~i~~~~--IvG~PgE---T 304 (429)
T TIGR00089 235 TDDLIELIAEN--PKVCKHLHLPVQSGSDRILKR-MNRK--YTREEYLDIVEKIRAKIPDAAITTDI--IVGFPGE---T 304 (429)
T ss_pred CHHHHHHHHhC--CCccCceeeccccCChHHHHh-CCCC--CCHHHHHHHHHHHHHHCCCCEEEeeE--EEECCCC---C
Confidence 35666665543 123455444 33445543332 2322 12456777888888888 5555444 4566754 6
Q ss_pred hHHHHHHHHHHHHcCcCEEEe
Q psy12516 170 PHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~l 190 (327)
.+.+.+..+.+.+.+.+.+.+
T Consensus 305 ~ed~~~tl~~i~~~~~~~~~~ 325 (429)
T TIGR00089 305 EEDFEETLDLVEEVKFDKLHS 325 (429)
T ss_pred HHHHHHHHHHHHhcCCCEeec
Confidence 788888888888888876653
No 341
>PRK12677 xylose isomerase; Provisional
Probab=85.96 E-value=34 Score=32.98 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=45.4
Q ss_pred HHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHH--H-HHHhh---hhhcccCcchhhhhhhh--hHHHHHHhh
Q psy12516 57 LANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATED--L-VYMLE---GKSMQCGVKEIAVFASA--SEMFSKRNI 127 (327)
Q Consensus 57 ~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~--v-~~~l~---~~~~~~Gid~i~l~~~~--sd~~~~~~l 127 (327)
+..+.+++ +.|..+.-++.+-....+|..+.-.+++.+. . +..++ +.+.+.|.+.+.+.... ++.-.....
T Consensus 69 ~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~ 148 (384)
T PRK12677 69 IKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDV 148 (384)
T ss_pred HHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCH
Confidence 34445555 4666655555543333344333222332221 1 11111 24556677666553221 000000011
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCeEEEEEee
Q psy12516 128 NCTIEESLERFSEVVSTALTNGIRVRGYISC 158 (327)
Q Consensus 128 ~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~ 158 (327)
....+...+.+..+.+++.+.|..|...+..
T Consensus 149 ~~a~~~~~eaL~~l~~~A~~~G~gV~laIEp 179 (384)
T PRK12677 149 RAALDRYREAIDLLAAYVKDQGYDLRFALEP 179 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 1112233455667778898877555555665
No 342
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=85.96 E-value=10 Score=33.10 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=87.1
Q ss_pred HHHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEeccc
Q psy12516 2 KVASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~ 76 (327)
+.++++.+.|+| .+-+.| |...|.-. .+.++++++. +..++..|..-.. ....+..+ ++|+++|-.=+-
T Consensus 16 ~~i~~l~~~g~d~lHiDiMD--g~fvpn~~~g~~~i~~i~~~-~~~~~DvHLMv~~---P~~~i~~~~~~g~~~i~~H~E 89 (201)
T PF00834_consen 16 EEIKRLEEAGADWLHIDIMD--GHFVPNLTFGPDIIKAIRKI-TDLPLDVHLMVEN---PERYIEEFAEAGADYITFHAE 89 (201)
T ss_dssp HHHHHHHHTT-SEEEEEEEB--SSSSSSB-B-HHHHHHHHTT-SSSEEEEEEESSS---GGGHHHHHHHHT-SEEEEEGG
T ss_pred HHHHHHHHcCCCEEEEeecc--cccCCcccCCHHHHHHHhhc-CCCcEEEEeeecc---HHHHHHHHHhcCCCEEEEccc
Confidence 356788899999 688899 66655432 4457777776 4588888886554 33455555 799998643222
Q ss_pred CCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcch-----hhh---hhhhhHH--HHHHhhc----CChHHHHHHHHHHH
Q psy12516 77 GLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKE-----IAV---FASASEM--FSKRNIN----CTIEESLERFSEVV 142 (327)
Q Consensus 77 glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~-----i~l---~~~~sd~--~~~~~l~----~s~ee~i~~~~~~v 142 (327)
.. ..+..++..+++.+++.|+-. +.. +...-|. ++..+-| .-.++.+++++++.
T Consensus 90 ~~------------~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~ 157 (201)
T PF00834_consen 90 AT------------EDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELR 157 (201)
T ss_dssp GT------------TTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHH
T ss_pred ch------------hCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHH
Confidence 11 235566677777666665421 000 0000000 0001111 12356788888888
Q ss_pred HHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 143 STALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 143 ~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
++..++|.++...+- +-.+. +.++++.++|+|.+..
T Consensus 158 ~~~~~~~~~~~I~vD--------GGI~~----~~~~~~~~aGad~~V~ 193 (201)
T PF00834_consen 158 KLIPENGLDFEIEVD--------GGINE----ENIKQLVEAGADIFVA 193 (201)
T ss_dssp HHHHHHTCGSEEEEE--------SSEST----TTHHHHHHHT--EEEE
T ss_pred HHHHhcCCceEEEEE--------CCCCH----HHHHHHHHcCCCEEEE
Confidence 888887766543222 12333 3355677889998764
No 343
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=85.76 E-value=33 Score=33.96 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=45.6
Q ss_pred HHHHHHhhhhhcccCcchhhh-hhhhhHHH-HHHhhcCChHHHHHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCC
Q psy12516 94 EDLVYMLEGKSMQCGVKEIAV-FASASEMF-SKRNINCTIEESLERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 94 e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~-~~~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~ 169 (327)
++++.+|.+. ..|+..+++ +.+.|+.. ...+-+.+.+ .+.+.++.+++. ++.+... .++|.|.+ +
T Consensus 270 ~ell~~m~~~--~~g~~~i~iglQSgsd~vLk~m~R~~t~~----~~~~~i~~ir~~~~~~~i~~d--~IvGfPgE---T 338 (467)
T PRK14329 270 DDVLEVMAKY--DNICKHIHLPVQSGSDRILKLMNRKYTRE----WYLDRIDAIRRIIPDCGISTD--MIAGFPTE---T 338 (467)
T ss_pred HHHHHHHHhC--CCCCCeEEeCCCcCCHHHHHhcCCCCCHH----HHHHHHHHHHHhCCCCEEEEe--EEEeCCCC---C
Confidence 4555555432 124555555 23344432 2222233433 345566666665 4444443 34566654 6
Q ss_pred hHHHHHHHHHHHHcCcCEEE
Q psy12516 170 PHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~ 189 (327)
.+.+.+..+.+.+.+.+.+.
T Consensus 339 ~edf~~tl~~i~~l~~~~~~ 358 (467)
T PRK14329 339 EEDHQDTLSLMEEVGYDFAF 358 (467)
T ss_pred HHHHHHHHHHHHhhCCCeEe
Confidence 67788888888888877544
No 344
>PRK08444 hypothetical protein; Provisional
Probab=85.68 E-value=3.2 Score=39.54 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=70.0
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC-ccCHHHHHHHHHHHHHhcCCCeEEE-------eecCCcCcHHHHHHHHH
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG-VGTPGTMRLMLEDVLTVIPADRLAV-------HCHDTYGQALANILTAM 237 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~~~~~~~~~~~~~~~~~l~~-------H~Hn~~g~a~an~l~a~ 237 (327)
+..++|++.+.++.+.+.|++++.|.-... ....+.+.++++.+|+.+|++.+.. |.-...|+.+--++..+
T Consensus 78 y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~L 157 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDM 157 (353)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 457889999999999999999999972211 1233677889999998888532221 11226788886666666
Q ss_pred -HhcCceeeeccccCCCCCC-----CCCCCCCccHHHHHHH---HHhCCCCCC
Q psy12516 238 -EFGISVFDSSIAGLGGCPY-----ARGASGNVATEDLVYM---LEGMGIETG 281 (327)
Q Consensus 238 -~~G~~~vd~s~~G~G~~p~-----~~g~~Gn~~~e~~~~~---l~~~g~~~~ 281 (327)
++|.+.+.. =|.-=| ..-.++-.+.++.+.. .++.|+.+.
T Consensus 158 keAGl~~~~g----~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~ 206 (353)
T PRK08444 158 LEYGVDSMPG----GGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSN 206 (353)
T ss_pred HHhCcccCCC----CCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 779886543 111011 0001345566666555 456777643
No 345
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=85.64 E-value=14 Score=35.02 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC-EEEecCCCCc-cCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY-EISLGDTIGV-GTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~-~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~ 214 (327)
.+++++..|++.++-|-+ |. -++.+.+..+.+.+.+.+.. .|.++..... +....+..++..+.+..+
T Consensus 5 ~~k~lL~~A~~~~yAVgA-----fN-----~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~ 74 (347)
T PRK09196 5 SLRQLLDHAAEHGYGVPA-----FN-----VNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP 74 (347)
T ss_pred cHHHHHHHHHHcCceEEE-----ee-----eCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC
Confidence 367788899999997752 32 26788999999999999876 4555444332 334556777777777666
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
.+|+.+|. |-|.....+..|+++|.+- +|+|-.
T Consensus 75 ~VPValHL--DHg~~~e~i~~ai~~GftSVMiDgS~l 109 (347)
T PRK09196 75 HIPVVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSLK 109 (347)
T ss_pred CCcEEEEC--CCCCCHHHHHHHHHcCCCEEEecCCCC
Confidence 56777655 5566778899999999875 699865
No 346
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=85.60 E-value=5.1 Score=36.04 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHH--HHHHHHHhcC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRL--MLEDVLTVIP 214 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~--~~~~~~~~~~ 214 (327)
..++++++.+.|..+.. + . +-.+.+++.+.++.+.+.|. +.+.+=-+.+.=+|.+=.+ .+..+++.++
T Consensus 102 n~~lL~~~A~tgkPvIl--S--T-----G~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~ 172 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVIL--S--T-----GMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG 172 (241)
T ss_dssp -HHHHHHHHTT-S-EEE--E--------TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST
T ss_pred CHHHHHHHHHhCCcEEE--E--C-----CCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC
Confidence 35677888888998753 2 2 35788999999999966654 5555566667766654444 4889999999
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCcee--eeccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVF--DSSIA 249 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v--d~s~~ 249 (327)
.++|+--|-. | ...+++|+..||..| +.|+.
T Consensus 173 -~~vG~SDHt~-g--~~~~~~AvalGA~vIEKHfTld 205 (241)
T PF03102_consen 173 -VPVGYSDHTD-G--IEAPIAAVALGARVIEKHFTLD 205 (241)
T ss_dssp -SEEEEEE-SS-S--SHHHHHHHHTT-SEEEEEB-S-
T ss_pred -CCEEeCCCCC-C--cHHHHHHHHcCCeEEEEEEECC
Confidence 7999988877 4 455789999999987 44544
No 347
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=85.49 E-value=26 Score=31.22 Aligned_cols=178 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEeccc
Q psy12516 2 KVASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~ 76 (327)
+.++++.+.|+| .+-+.| |...|.-. ...++.+++ ..++..|..-.. ..+++..+ ++|++.|-.=.-
T Consensus 29 ~el~~l~~~g~d~lHiDVMD--G~FVPNitfGp~~i~~i~~---~~~~DvHLMv~~---P~~~i~~~~~aGad~It~H~E 100 (228)
T PRK08091 29 ETLTTLSENQLRLLHFDIAD--GQFSPFFTVGAIAIKQFPT---HCFKDVHLMVRD---QFEVAKACVAAGADIVTLQVE 100 (228)
T ss_pred HHHHHHHHCCCCEEEEeccC--CCcCCccccCHHHHHHhCC---CCCEEEEeccCC---HHHHHHHHHHhCCCEEEEccc
Q ss_pred CCCCCCCCCCccCCCcHHHHHHHhhhhhc--ccC--cchhhhhhhhhHHHHHHh------------hcCChHHHHHHHHH
Q psy12516 77 GLGGCPYARGASGNVATEDLVYMLEGKSM--QCG--VKEIAVFASASEMFSKRN------------INCTIEESLERFSE 140 (327)
Q Consensus 77 glg~~p~~~~~~gn~~~e~v~~~l~~~~~--~~G--id~i~l~~~~sd~~~~~~------------l~~s~ee~i~~~~~ 140 (327)
.... +..++..+++.++ +.| ++.-.=+....+...... =..-.++.++++++
T Consensus 101 a~~~------------~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~ 168 (228)
T PRK08091 101 QTHD------------LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQ 168 (228)
T ss_pred Cccc------------HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHH
Q ss_pred HHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhc
Q psy12516 141 VVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 141 ~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
+-++..++|+++...+-.-.. .+..+++.++|+|.+... +++..-.+..+.++.+|..+
T Consensus 169 lr~~~~~~~~~~~IeVDGGI~------------~~ti~~l~~aGaD~~V~G--SalF~~~d~~~~i~~l~~~~ 227 (228)
T PRK08091 169 VENRLGNRRVEKLISIDGSMT------------LELASYLKQHQIDWVVSG--SALFSQGELKTTLKEWKSSL 227 (228)
T ss_pred HHHHHHhcCCCceEEEECCCC------------HHHHHHHHHCCCCEEEEC--hhhhCCCCHHHHHHHHHHhh
No 348
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=85.41 E-value=9.5 Score=35.60 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCC-----------ccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIG-----------VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTA 236 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G-----------~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a 236 (327)
.+++++.+.+++..+.|++.|.+.-+.+ .++++++..++...++. +.++.+|++.+ .....+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~--g~~v~~H~~~~-----~~i~~~ 189 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA--GLYVAAHAYGA-----EAIRRA 189 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc--CCEEEEEeCCH-----HHHHHH
Confidence 3577888888888888999876654322 46788888888877764 46788888764 344567
Q ss_pred HHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 237 MEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 237 ~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
+++|++.++= +..-.++.+..+++.|+.
T Consensus 190 l~~G~~~i~H---------------~~~~~~~~~~~l~~~g~~ 217 (342)
T cd01299 190 IRAGVDTIEH---------------GFLIDDETIELMKEKGIF 217 (342)
T ss_pred HHcCCCEEee---------------cCCCCHHHHHHHHHCCcE
Confidence 7888876531 112235666677776654
No 349
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=85.38 E-value=16 Score=33.50 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE-EEecCCC-CccCHHHHHHHHHHHHHhcCCC
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE-ISLGDTI-GVGTPGTMRLMLEDVLTVIPAD 216 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~-i~l~Dt~-G~~~P~~~~~~~~~~~~~~~~~ 216 (327)
+++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+... |.++... .......+..++..+.+... +
T Consensus 2 k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~-V 70 (276)
T cd00947 2 KELLKKAREGGYAVGA-----FN-----INNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERAS-V 70 (276)
T ss_pred HHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-C
Confidence 4577889999987742 21 256788888999999888764 4443322 22334567777777776653 5
Q ss_pred eEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 217 RLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 217 ~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
|+.+|. |-|........|+++|.+- +|+|-.
T Consensus 71 PV~lHL--DH~~~~~~i~~ai~~GftSVMiD~S~l 103 (276)
T cd00947 71 PVALHL--DHGSSFELIKRAIRAGFSSVMIDGSHL 103 (276)
T ss_pred CEEEEC--CCCCCHHHHHHHHHhCCCEEEeCCCCC
Confidence 777755 5566678889999999864 577665
No 350
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=85.24 E-value=16 Score=33.50 Aligned_cols=45 Identities=4% Similarity=-0.009 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHcCcCEEEec-CCCCccCHHHHHHHHHHHHHhc
Q psy12516 169 PPHNVTRVATALYKMGCYEISLG-DTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
+.++..++++.+.+.|+|.+.+. -.....+++++.+.++.+.+..
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~ 123 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV 123 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC
Confidence 44555555555555565543332 2222234455555555555443
No 351
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=85.14 E-value=21 Score=34.28 Aligned_cols=162 Identities=13% Similarity=0.020 Sum_probs=86.1
Q ss_pred cCcCEEEecCCc-cccCHHHHHHHHHHHHhh-cCCCeeE--EEecCccchHHHHHHHHHHcCCc-EEEecccCCCCCCCC
Q psy12516 10 MGCYEISLGDTI-GVGTPGTMRLMLEDVLTV-IPADRLA--VHCHDTYGQALANILTAMEFGIS-VFDSSIAGLGGCPYA 84 (327)
Q Consensus 10 ~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~-~~~~~~~--~H~h~~~g~~~~~~~~a~~aG~~-~id~~~~glg~~p~~ 84 (327)
.++..|.+.-+. -.+.+..+.+.++.+++. .. ..++ --..++.|+- ..+..-.++|.+ .+-.|+.+....-+.
T Consensus 172 ~~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~-~~is~r~ItisT~Gl~-~~i~~L~~~gl~~~LaiSL~a~~~e~r~ 249 (368)
T PRK14456 172 RGITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYR-FSISQRKITISTVGIT-PEIDRLATSGLKTKLAVSLHSADQEKRE 249 (368)
T ss_pred CCccEEEEeCcCccccCHHHHHHHHHHHhccccc-cCcCcCeeEEECCCCh-HHHHHHHHcCCCceEEEEecCCCHHHHH
Confidence 456777776654 344455677777777653 21 1121 2234555643 344444478886 688888876653332
Q ss_pred CCcc---CCCcHHHHHHHhhhhhcccCcch-hhh--hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEee
Q psy12516 85 RGAS---GNVATEDLVYMLEGKSMQCGVKE-IAV--FASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISC 158 (327)
Q Consensus 85 ~~~~---gn~~~e~v~~~l~~~~~~~Gid~-i~l--~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~ 158 (327)
.... ...+.++++..+.....+.|... +++ ... +|-+ .+.+.++++++++...+|+..--.
T Consensus 250 ~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~G---------vNDs----~eda~~L~~~l~~~~~~VnlIpyn 316 (368)
T PRK14456 250 RLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEG---------INDS----PEDARKLIRFASRFFCKINLIDYN 316 (368)
T ss_pred HhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcC---------CCCC----HHHHHHHHHHHhcCCCeeEEeeec
Confidence 2211 13467787777766555555331 111 111 1212 345666777777766666543212
Q ss_pred ecc-CCCCCCCChHHHHHHHHHHHHcCcCE
Q psy12516 159 VVG-CPYEGAVPPHNVTRVATALYKMGCYE 187 (327)
Q Consensus 159 ~~g-~~~~~r~~~e~l~~~~~~~~~~g~~~ 187 (327)
.++ .++ .+.+.+.+.++.+.+.+.|...
T Consensus 317 ~~~~~~~-~~ps~e~i~~F~~~L~~~Gi~v 345 (368)
T PRK14456 317 SIVNIKF-EPVCSSTRERFRDRLLDAGLQV 345 (368)
T ss_pred cCCCCCC-CCCCHHHHHHHHHHHHHCCCcE
Confidence 221 122 2456677777777777777654
No 352
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=85.12 E-value=6.5 Score=37.07 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC--EEEe-cCCCCccCHHHHHH--HHHHHHHhc
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY--EISL-GDTIGVGTPGTMRL--MLEDVLTVI 213 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~--~i~l-~Dt~G~~~P~~~~~--~~~~~~~~~ 213 (327)
.++++++.+.|..+- ++. +-.+.+++...++.+.+.|.. .|.| --+++.-+|..-.+ .+..+++.+
T Consensus 123 ~pLL~~~A~~gkPvi--lSt-------Gmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f 193 (329)
T TIGR03569 123 APLLKKIARFGKPVI--LST-------GMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF 193 (329)
T ss_pred HHHHHHHHhcCCcEE--EEC-------CCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh
Confidence 456777778898864 222 236889999999999999875 2333 33455555554444 377888888
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+ .++++--|-. | ...+++|+..||+.|+-
T Consensus 194 ~-~pVG~SdHt~-G--~~~~~aAvalGA~iIEk 222 (329)
T TIGR03569 194 D-LPVGYSDHTL-G--IEAPIAAVALGATVIEK 222 (329)
T ss_pred C-CCEEECCCCc-c--HHHHHHHHHcCCCEEEe
Confidence 6 6899855543 4 57789999999998754
No 353
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=85.03 E-value=14 Score=33.71 Aligned_cols=88 Identities=16% Similarity=0.233 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe---cCCCCcc--CHHHHHHHHHHHHHh
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL---GDTIGVG--TPGTMRLMLEDVLTV 212 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l---~Dt~G~~--~P~~~~~~~~~~~~~ 212 (327)
..++.+.+++.|+.....+ +| .++++.+.++++... .-||+ .-++|.- .|.++.++++.+|+.
T Consensus 129 ~~~~~~~~~~~gl~~I~lv-----~p---~t~~~Ri~~i~~~a~----gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~ 196 (259)
T PF00290_consen 129 SEELREAAKKHGLDLIPLV-----AP---TTPEERIKKIAKQAS----GFIYLVSRMGVTGSRTELPDELKEFIKRIKKH 196 (259)
T ss_dssp HHHHHHHHHHTT-EEEEEE-----ET---TS-HHHHHHHHHH-S----SEEEEESSSSSSSTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEEE-----CC---CCCHHHHHHHHHhCC----cEEEeeccCCCCCCcccchHHHHHHHHHHHhh
Confidence 3455566777888753211 12 245555555554332 33444 4555543 478999999999988
Q ss_pred cCCCeEEEeecCCcCcHHHH--HHHHHHhcCcee
Q psy12516 213 IPADRLAVHCHDTYGQALAN--ILTAMEFGISVF 244 (327)
Q Consensus 213 ~~~~~l~~H~Hn~~g~a~an--~l~a~~~G~~~v 244 (327)
. +.|+-+ |.++.+ -...+..|+|.|
T Consensus 197 ~-~~Pv~v------GFGI~~~e~~~~~~~~aDGv 223 (259)
T PF00290_consen 197 T-DLPVAV------GFGISTPEQAKKLAAGADGV 223 (259)
T ss_dssp T-SS-EEE------ESSS-SHHHHHHHHTTSSEE
T ss_pred c-CcceEE------ecCCCCHHHHHHHHccCCEE
Confidence 7 456665 555444 444455666543
No 354
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=84.98 E-value=10 Score=33.99 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI 188 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i 188 (327)
+...++|+.+++.|++|-.-+..-+..+ ....+++.+++.+++..++|++.|
T Consensus 100 ~~~~rlI~~~~~~g~~v~~EvG~K~~~~-~~~~~~~~~i~~~~~~LeAGA~~V 151 (237)
T TIGR03849 100 EERCNLIERAKDNGFMVLSEVGKKSPEK-DSELTPDDRIKLINKDLEAGADYV 151 (237)
T ss_pred HHHHHHHHHHHhCCCeEeccccccCCcc-cccCCHHHHHHHHHHHHHCCCcEE
Confidence 3455667777777777643222211111 124667777777777778887744
No 355
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=84.89 E-value=24 Score=30.23 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=91.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.+.|++.|.+..+.. . ..+.++.+++.+|+..+|....-+. ...-.++++|++.+.+ +.
T Consensus 20 ~~~~~l~~~G~~~vev~~~~~----~-~~~~i~~l~~~~~~~~iGag~v~~~----~~~~~a~~~Ga~~i~~-----p~- 84 (190)
T cd00452 20 ALAEALIEGGIRAIEITLRTP----G-ALEAIRALRKEFPEALIGAGTVLTP----EQADAAIAAGAQFIVS-----PG- 84 (190)
T ss_pred HHHHHHHHCCCCEEEEeCCCh----h-HHHHHHHHHHHCCCCEEEEEeCCCH----HHHHHHHHcCCCEEEc-----CC-
Confidence 567888999999888876533 2 3346778888887777776443322 2345666777777741 11
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVG 161 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g 161 (327)
.. .++++++++.|..+. .|
T Consensus 85 ---------~~----------------------------------------------~~~~~~~~~~~~~~i------~g 103 (190)
T cd00452 85 ---------LD----------------------------------------------PEVVKAANRAGIPLL------PG 103 (190)
T ss_pred ---------CC----------------------------------------------HHHHHHHHHcCCcEE------CC
Confidence 00 123555666666542 11
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 162 CPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 162 ~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
..+++++. ++.++|+|.|.+ +... |. -.++++.+++.+|.+|+..= -|.-..|....+++|+
T Consensus 104 -----v~t~~e~~----~A~~~Gad~i~~-~p~~---~~-g~~~~~~l~~~~~~~p~~a~----GGI~~~n~~~~~~~G~ 165 (190)
T cd00452 104 -----VATPTEIM----QALELGADIVKL-FPAE---AV-GPAYIKALKGPFPQVRFMPT----GGVSLDNAAEWLAAGV 165 (190)
T ss_pred -----cCCHHHHH----HHHHCCCCEEEE-cCCc---cc-CHHHHHHHHhhCCCCeEEEe----CCCCHHHHHHHHHCCC
Confidence 23454433 345689998887 3222 22 34567777776665565542 3666688888899998
Q ss_pred ceeee
Q psy12516 242 SVFDS 246 (327)
Q Consensus 242 ~~vd~ 246 (327)
+.|-+
T Consensus 166 ~~v~v 170 (190)
T cd00452 166 VAVGG 170 (190)
T ss_pred EEEEE
Confidence 76643
No 356
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=84.84 E-value=24 Score=33.14 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=9.7
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe
Q psy12516 169 PPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l 190 (327)
+.+++..+++++.+.|+..|.+
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~ 67 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRL 67 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE
Confidence 3344444444444444444444
No 357
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=84.84 E-value=16 Score=33.69 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC-EEEecCCCCc-cCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY-EISLGDTIGV-GTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~-~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~ 214 (327)
.++++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+.. +|.+....-. ..-..+..++..+.++.+
T Consensus 5 ~~k~iL~~A~~~~yaV~A-----fN-----v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK12857 5 TVAELLKKAEKGGYAVGA-----FN-----CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS 74 (284)
T ss_pred cHHHHHHHHHHcCCeEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC
Confidence 367788899999987642 21 25778899999999998876 4444443221 223445566666666654
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+|+.+|. |-|........|+++|.+- +|+|-.
T Consensus 75 -VPValHL--DH~~~~e~i~~ai~~GftSVM~DgS~l 108 (284)
T PRK12857 75 -VPVALHL--DHGTDFEQVMKCIRNGFTSVMIDGSKL 108 (284)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHcCCCeEEEeCCCC
Confidence 5777654 6667778899999999874 687765
No 358
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=84.82 E-value=34 Score=31.95 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=48.4
Q ss_pred HHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCC
Q psy12516 3 VASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGC 81 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~ 81 (327)
+++.+.+.|+..|.|..---.+.| ++.++++.+++..+..++.+ .+.|.-+...+..+ ++|.+.+..++.++...
T Consensus 57 ~i~~~~~~gi~~I~~tGGEPll~~-~l~~li~~i~~~~~~~~i~i---tTNG~ll~~~~~~L~~agl~~i~ISlds~~~e 132 (331)
T PRK00164 57 LVRAFVALGVRKVRLTGGEPLLRK-DLEDIIAALAALPGIRDLAL---TTNGYLLARRAAALKDAGLDRVNVSLDSLDPE 132 (331)
T ss_pred HHHHHHHCCCCEEEEECCCCcCcc-CHHHHHHHHHhcCCCceEEE---EcCchhHHHHHHHHHHcCCCEEEEEeccCCHH
Confidence 445566778888888542222222 35566666655422233433 33354444444444 67888888888766542
Q ss_pred CCCCCccCCCcHHHHHHHhh
Q psy12516 82 PYARGASGNVATEDLVYMLE 101 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~ 101 (327)
-|... .+....+.++..++
T Consensus 133 ~~~~i-~~~~~~~~vl~~i~ 151 (331)
T PRK00164 133 RFKAI-TGRDRLDQVLAGID 151 (331)
T ss_pred HhccC-CCCCCHHHHHHHHH
Confidence 22221 22234555555443
No 359
>PLN02591 tryptophan synthase
Probab=84.59 E-value=31 Score=31.23 Aligned_cols=164 Identities=12% Similarity=0.109 Sum_probs=86.3
Q ss_pred cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHH------H-----HHHhhcCChHHHHHHHHHHHHHHHH-cCCeEEEE
Q psy12516 88 SGNVATEDLVYMLEGKSMQCGVKEIAVFASASEM------F-----SKRNINCTIEESLERFSEVVSTALT-NGIRVRGY 155 (327)
Q Consensus 88 ~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~------~-----~~~~l~~s~ee~i~~~~~~v~~a~~-~Gi~v~~~ 155 (327)
.|-++.|..+..++ ...+.|+|.+.+=.+.||. . .-.+-+.+.++.++.+ +..++ ..+.+ .
T Consensus 10 aG~P~~e~~~~~~~-~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~----~~~r~~~~~p~--i 82 (250)
T PLN02591 10 AGDPDLDTTAEALR-LLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISML----KEVAPQLSCPI--V 82 (250)
T ss_pred CCCCCHHHHHHHHH-HHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHH----HHHhcCCCCCE--E
Confidence 46677777665443 3356788877775555552 1 1122244544544443 33332 22222 2
Q ss_pred EeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHH
Q psy12516 156 ISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 235 (327)
Q Consensus 156 l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~ 235 (327)
++. +..+.. ++ =+.++++.+.++|++.+.++| +.+++..++...+++. ++.+.+-.--+..-.-...++
T Consensus 83 lm~-Y~N~i~-~~---G~~~F~~~~~~aGv~GviipD----LP~ee~~~~~~~~~~~--gl~~I~lv~Ptt~~~ri~~ia 151 (250)
T PLN02591 83 LFT-YYNPIL-KR---GIDKFMATIKEAGVHGLVVPD----LPLEETEALRAEAAKN--GIELVLLTTPTTPTERMKAIA 151 (250)
T ss_pred EEe-cccHHH-Hh---HHHHHHHHHHHcCCCEEEeCC----CCHHHHHHHHHHHHHc--CCeEEEEeCCCCCHHHHHHHH
Confidence 222 111110 11 245678889999999999999 4678888888877764 233333332333333344444
Q ss_pred HHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHHHh
Q psy12516 236 AMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYMLEG 275 (327)
Q Consensus 236 a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l~~ 275 (327)
+...|.=+. .|..|..+ .+++ ...+++.+..+++
T Consensus 152 ~~~~gFIY~-Vs~~GvTG-----~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 152 EASEGFVYL-VSSTGVTG-----ARASVSGRVESLLQELKE 186 (250)
T ss_pred HhCCCcEEE-eeCCCCcC-----CCcCCchhHHHHHHHHHh
Confidence 444444332 24444443 0334 4567787888876
No 360
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=84.53 E-value=34 Score=31.75 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=62.7
Q ss_pred hcCChHHHHHHHHHHHHHH-HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHH
Q psy12516 127 INCTIEESLERFSEVVSTA-LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTM 202 (327)
Q Consensus 127 l~~s~ee~i~~~~~~v~~a-~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~ 202 (327)
-+.+.++.++.+.+.+..+ ++.|+.+...++.. ...+++...+..+.+.+++.+.+.=.|..| ..+++.+
T Consensus 102 ~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~ 175 (325)
T cd01320 102 RGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGL------RHLSPESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKF 175 (325)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEec------CCCCHHHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHH
Confidence 3566777777766666654 55688876544421 113456666666666665544222223322 3466777
Q ss_pred HHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHH-hcCce
Q psy12516 203 RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISV 243 (327)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~-~G~~~ 243 (327)
..++...++. +.++.+|+..+.+ ..+...+++ .|+++
T Consensus 176 ~~~~~~A~~~--g~~v~~H~~E~~~--~~~~~~a~~~~g~~~ 213 (325)
T cd01320 176 VRAFQRAREA--GLRLTAHAGEAGG--PESVRDALDLLGAER 213 (325)
T ss_pred HHHHHHHHHC--CCceEEeCCCCCC--HHHHHHHHHHcCCcc
Confidence 7777777754 4678888876533 233455665 67764
No 361
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=84.52 E-value=33 Score=33.29 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHH--cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEE
Q psy12516 135 LERFSEVVSTALT--NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 135 i~~~~~~v~~a~~--~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~ 189 (327)
.+.+.+.++.+++ .|+.+...++ +|.|.+ +.+.+.+..+.+.+.+.+.+.
T Consensus 272 ~~~~~~~v~~l~~~~~gi~i~~~~I--vG~PgE---T~ed~~~tl~~i~~~~~~~~~ 323 (414)
T TIGR01579 272 RDDFLKLVNKLRSVRPDYAFGTDII--VGFPGE---SEEDFQETLRMVKEIEFSHLH 323 (414)
T ss_pred HHHHHHHHHHHHHhCCCCeeeeeEE--EECCCC---CHHHHHHHHHHHHhCCCCEEE
Confidence 4557778888888 7888776655 455654 677888888888888887655
No 362
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=84.52 E-value=21 Score=32.92 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE-EEecCCC-CccCHHHHHHHHHHHHHhcCC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE-ISLGDTI-GVGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~-i~l~Dt~-G~~~P~~~~~~~~~~~~~~~~ 215 (327)
++++++.|++.|+-|-+ |. -++.+.+..+.+.+.+.+... |.++... ..+....+..++..+.+...
T Consensus 4 ~k~ll~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~- 72 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPA-----FN-----IHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYN- 72 (282)
T ss_pred HHHHHHHHHHcCCeEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCC-
Confidence 56778899999997742 32 257789999999999998774 4443322 12334556677777776664
Q ss_pred CeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 216 DRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+|+.+|. |-|........|+++|.+- +|+|-.
T Consensus 73 VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~l 106 (282)
T TIGR01858 73 MPLALHL--DHHESLDDIRQKVHAGVRSAMIDGSHF 106 (282)
T ss_pred CCEEEEC--CCCCCHHHHHHHHHcCCCEEeecCCCC
Confidence 5777654 5566678889999999864 566644
No 363
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=84.45 E-value=36 Score=31.88 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=36.4
Q ss_pred CCCCChHHHHHHHHHHHHcC-cCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHH
Q psy12516 165 EGAVPPHNVTRVATALYKMG-CYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTA 236 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g-~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a 236 (327)
++-.++..+.+ +.+.+ +|.+.+ |-.-+....+..++..... .. ++++.+|+|...|++++.++..
T Consensus 230 Es~~~~~~~~~----~~~~~~~dvi~~-d~~~~GGit~~~~~~~~A~-~~-gi~~~~~~~~es~i~~aa~~hl 295 (324)
T TIGR01928 230 ESITSLDDARN----LIELGNVKVINI-KPGRLGGLTEVQKAIETCR-EH-GAKVWIGGMLETGISRAFNVAL 295 (324)
T ss_pred CCcCCHHHHHH----HHHcCCCCEEEe-CcchhcCHHHHHHHHHHHH-Hc-CCeEEEcceEcccHHHHHHHHH
Confidence 44455555443 44444 566654 4433333344445444433 33 4689999998888887666543
No 364
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=84.42 E-value=14 Score=34.68 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=49.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++.+.+.|++.|.+-=+.| .+....++++.+++..|++++....- .....+..++++|++.|.++++
T Consensus 97 ~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~p~v~Vi~G~v----~t~~~A~~l~~aGaD~I~vg~g 165 (325)
T cd00381 97 ERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKYPNVDVIAGNV----VTAEAARDLIDAGADGVKVGIG 165 (325)
T ss_pred HHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHCCCceEEECCC----CCHHHHHHHHhcCCCEEEECCC
Confidence 567888999999877633334 33567788999999888677766222 3356678888999999997653
No 365
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=84.31 E-value=16 Score=33.67 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
|..+.+.+...+ +..++.|++.+-+.....+
T Consensus 17 g~iD~~~l~~~i-~~l~~~Gv~gi~~~Gs~GE 47 (292)
T PRK03170 17 GSVDFAALRKLV-DYLIANGTDGLVVVGTTGE 47 (292)
T ss_pred CCcCHHHHHHHH-HHHHHcCCCEEEECCcCCc
Confidence 455554443322 2334456665554444433
No 366
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=84.30 E-value=21 Score=32.99 Aligned_cols=100 Identities=12% Similarity=0.088 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE-EEecCCC-CccCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE-ISLGDTI-GVGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~-i~l~Dt~-G~~~P~~~~~~~~~~~~~~~ 214 (327)
..+++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+... |.++... .......+..++..+.+...
T Consensus 5 ~~k~il~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK09195 5 STKQMLNNAQRGGYAVPA-----FN-----IHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYH 74 (284)
T ss_pred cHHHHHHHHHHcCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCC
Confidence 366788899999987642 21 257789999999999998764 4444322 22333456667777776654
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+|+.+| =|-|........|+++|.+- +|+|-.
T Consensus 75 -VPV~lH--LDHg~~~e~i~~Ai~~GftSVM~DgS~l 108 (284)
T PRK09195 75 -HPLALH--LDHHEKFDDIAQKVRSGVRSVMIDGSHL 108 (284)
T ss_pred -CCEEEE--CCCCCCHHHHHHHHHcCCCEEEeCCCCC
Confidence 577765 46666789999999999864 577755
No 367
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=84.23 E-value=8.9 Score=30.70 Aligned_cols=82 Identities=20% Similarity=0.113 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCc
Q psy12516 30 RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109 (327)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gi 109 (327)
.++....+..+|.----+...+.......-++.|++.|++-|=+.-..-|+|.| ..||...+.-+..+++..-+.|+
T Consensus 15 ad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~---~~Gn~~a~~Rv~~~k~~L~~~Gi 91 (124)
T PF02662_consen 15 ADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCHPGDCHY---REGNYRAEKRVERLKKLLEELGI 91 (124)
T ss_pred HHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCc---chhhHHHHHHHHHHHHHHHHcCC
Confidence 344555555566433345667777778889999999999999887788889999 67898888888888888788888
Q ss_pred chhhh
Q psy12516 110 KEIAV 114 (327)
Q Consensus 110 d~i~l 114 (327)
+.-++
T Consensus 92 ~~eRv 96 (124)
T PF02662_consen 92 EPERV 96 (124)
T ss_pred ChhHe
Confidence 75444
No 368
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=84.18 E-value=22 Score=30.48 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE-eecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV-HCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~-H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.+++...++++.+.+.|++.|.+..+.. . ..+.++.+++.+|++.++. ..|++ ...-.++.+|++++.+
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~----~-~~~~i~~l~~~~~~~~iGag~v~~~-----~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTP----G-ALEAIRALRKEFPEALIGAGTVLTP-----EQADAAIAAGAQFIVS 82 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh----h-HHHHHHHHHHHCCCCEEEEEeCCCH-----HHHHHHHHcCCCEEEc
Confidence 4688999999999999999998876633 2 4447889999988777776 33433 3557788999999853
No 369
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=84.07 E-value=31 Score=30.91 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=94.8
Q ss_pred HHHHHHcCcCEEEe-----------cCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHH---HHHHHHH-HcCC
Q psy12516 4 ASALYKMGCYEISL-----------GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQAL---ANILTAM-EFGI 68 (327)
Q Consensus 4 ~~~~~~~g~~~i~~-----------~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~---~~~~~a~-~aG~ 68 (327)
++.+.++|.+.+.. +|. |.++..++...++.+.+.. .+|+..-.=+-+|... ...+..+ ++|+
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~-~~lt~~e~~~~~~~I~~~~-~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~ 99 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDG-GLLTLTEMLAAVRRIARAV-SIPVIVDADTGYGNDPENVARTVRELERAGA 99 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SS-S-S-HHHHHHHHHHHHHHS-SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCC-CCCCHHHHHHHHHHHHhhh-cCcEEEEcccccCchhHHHHHHHHHHHHcCC
Confidence 35566778777665 365 8999999999999998887 4888888888888733 3333333 5777
Q ss_pred cEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 69 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 69 ~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
.-+..-=. .|.. . ...-.+ .++..++++.+.+..++.
T Consensus 100 agi~IEDq---~~~~-~-~~~l~~--------------------------------------~ee~~~kI~Aa~~a~~~~ 136 (238)
T PF13714_consen 100 AGINIEDQ---RCGH-G-GKQLVS--------------------------------------PEEMVAKIRAAVDARRDP 136 (238)
T ss_dssp SEEEEESB---STTT-S-TT-B----------------------------------------HHHHHHHHHHHHHHHSST
T ss_pred cEEEeecc---ccCC-C-CCceeC--------------------------------------HHHHHHHHHHHHHhccCC
Confidence 76553222 1110 0 000112 233456666666666666
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ 228 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~ 228 (327)
++-+.+= .+++.. .....++.++-++...++|+|.|.+. |..+++++.++.+.+ + .|+-+..+ .+.
T Consensus 137 ~~~I~AR-TDa~~~---~~~~~deaI~R~~aY~eAGAD~ifi~---~~~~~~~i~~~~~~~----~-~Pl~v~~~--~~~ 202 (238)
T PF13714_consen 137 DFVIIAR-TDAFLR---AEEGLDEAIERAKAYAEAGADMIFIP---GLQSEEEIERIVKAV----D-GPLNVNPG--PGT 202 (238)
T ss_dssp TSEEEEE-ECHHCH---HHHHHHHHHHHHHHHHHTT-SEEEET---TSSSHHHHHHHHHHH----S-SEEEEETT--SSS
T ss_pred eEEEEEe-cccccc---CCCCHHHHHHHHHHHHHcCCCEEEeC---CCCCHHHHHHHHHhc----C-CCEEEEcC--CCC
Confidence 6433211 011100 01233555555666667888887753 345566655555544 2 46666553 222
Q ss_pred HHHHHHHHHHhcCceee
Q psy12516 229 ALANILTAMEFGISVFD 245 (327)
Q Consensus 229 a~an~l~a~~~G~~~vd 245 (327)
-+.-.-.+.|+++|-
T Consensus 203 --~~~~eL~~lGv~~v~ 217 (238)
T PF13714_consen 203 --LSAEELAELGVKRVS 217 (238)
T ss_dssp --S-HHHHHHTTESEEE
T ss_pred --CCHHHHHHCCCcEEE
Confidence 334444567777665
No 370
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=84.07 E-value=3 Score=38.30 Aligned_cols=63 Identities=17% Similarity=0.066 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
..-++.+.++|+|.| |-+..++| ..+++..+|+++ ++++-.=+- | +..++.+++.|++.|-++
T Consensus 86 ~~Ea~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f-~~~fmad~~-~----l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 86 FVEAQILEALGVDYI---DESEVLTP--ADEEYHIDKWDF-TVPFVCGAR-N----LGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HHHHHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHc-CCCEEccCC-C----HHHHHHHHHCCCCeeecc
Confidence 344678889999998 88888999 558889999888 455555222 1 578899999999999887
No 371
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.05 E-value=11 Score=37.52 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 171 HNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
+...+.++.+.+.|++.|.+=-+.|. -..+.++++.+|+.+|+++|-.=-=.+ ...+..++++|+|.|-+.+.
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~--~~~~~~~i~~ik~~~p~~~v~agnv~t----~~~a~~l~~aGad~v~vgig 298 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH--QEKMLEALRAVRALDPGVPIVAGNVVT----AEGTRDLVEAGADIVKVGVG 298 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc--cHHHHHHHHHHHHHCCCCeEEeeccCC----HHHHHHHHHcCCCEEEECcc
Confidence 45678888999999999887555565 567888999999999986655410011 35678888999998875333
No 372
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=84.03 E-value=31 Score=30.83 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCcCEEEecCCC--CccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHH-hcCceeeec
Q psy12516 171 HNVTRVATALYKMGCYEISLGDTI--GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSS 247 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt~--G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~-~G~~~vd~s 247 (327)
..+.++++++.+.|++.+.+-|.. |.....+ .++++.+++..+ +|+-.-. |.....-+..+. .-...+|+.
T Consensus 146 ~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d-~~~i~~i~~~~~-ipviasG----Gi~s~~D~~~l~~~~~~GvdgV 219 (241)
T PRK14024 146 GDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPN-LELLREVCARTD-APVVASG----GVSSLDDLRALAELVPLGVEGA 219 (241)
T ss_pred ccHHHHHHHHHhcCCCEEEEEeecCCCCccCCC-HHHHHHHHhhCC-CCEEEeC----CCCCHHHHHHHhhhccCCccEE
Confidence 466788888999999987776653 3444432 556677776643 4666522 222222222221 111224444
Q ss_pred cccCCCCCCCCCCCCCccHHHHHHHH
Q psy12516 248 IAGLGGCPYARGASGNVATEDLVYML 273 (327)
Q Consensus 248 ~~G~G~~p~~~g~~Gn~~~e~~~~~l 273 (327)
+.|-+- -.|..++++.+...
T Consensus 220 ~igra~------~~g~~~~~~~~~~~ 239 (241)
T PRK14024 220 IVGKAL------YAGAFTLPEALAVV 239 (241)
T ss_pred EEeHHH------HcCCCCHHHHHHHh
Confidence 444332 35677787766543
No 373
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.94 E-value=32 Score=32.03 Aligned_cols=137 Identities=10% Similarity=0.063 Sum_probs=75.7
Q ss_pred hhcccCcchhhhhhhh--------hHH--HHHHhhcCChHHHHHHHHHHHHHHHHc---CCeEEEEEeeeccCCCCCCCC
Q psy12516 103 KSMQCGVKEIAVFASA--------SEM--FSKRNINCTIEESLERFSEVVSTALTN---GIRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~--------sd~--~~~~~l~~s~ee~i~~~~~~v~~a~~~---Gi~v~~~l~~~~g~~~~~r~~ 169 (327)
.+.+.|+|.+.+-... |+. +..-..+-+.+...+.+.++++..++. ++.+.+-++... ...+..+
T Consensus 149 ~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~--~~~~g~~ 226 (327)
T cd02803 149 RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD--FVPGGLT 226 (327)
T ss_pred HHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhc--cCCCCCC
Confidence 4566888877664332 111 122234556666666677777776664 333332222110 0112357
Q ss_pred hHHHHHHHHHHHHcCcCEEEecCCCCccC----------HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHh
Q psy12516 170 PHNVTRVATALYKMGCYEISLGDTIGVGT----------PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF 239 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~----------P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~ 239 (327)
.++..++++.+.+.|+|.|.+......-. +..-.+.++.+++.++ +||..-.--+ ....+..+++.
T Consensus 227 ~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~Ggi~---t~~~a~~~l~~ 302 (327)
T cd02803 227 LEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVK-IPVIAVGGIR---DPEVAEEILAE 302 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCC-CCEEEeCCCC---CHHHHHHHHHC
Confidence 88999999999999999998765432211 1223356677777664 4555422111 14556666776
Q ss_pred -cCceee
Q psy12516 240 -GISVFD 245 (327)
Q Consensus 240 -G~~~vd 245 (327)
|+|.|-
T Consensus 303 g~aD~V~ 309 (327)
T cd02803 303 GKADLVA 309 (327)
T ss_pred CCCCeee
Confidence 566543
No 374
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=83.90 E-value=29 Score=30.47 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCcCEEEecCC--CCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHH-HHHHHHhcCcee
Q psy12516 171 HNVTRVATALYKMGCYEISLGDT--IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALAN-ILTAMEFGISVF 244 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt--~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an-~l~a~~~G~~~v 244 (327)
....++++.+.+.|++.+.+-|. .|...... .++++.+++..+ +|+..-. |....+ ...+.+.|++.+
T Consensus 146 ~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~-~~~i~~i~~~~~-ipvi~~G----Gi~~~~di~~~~~~Ga~gv 216 (234)
T cd04732 146 VSLEELAKRFEELGVKAIIYTDISRDGTLSGPN-FELYKELAAATG-IPVIASG----GVSSLDDIKALKELGVAGV 216 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecCCCccCCCC-HHHHHHHHHhcC-CCEEEec----CCCCHHHHHHHHHCCCCEE
Confidence 35567888889999998877664 45444322 456777776654 4555533 233222 344555677654
No 375
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=83.82 E-value=43 Score=32.99 Aligned_cols=85 Identities=12% Similarity=0.176 Sum_probs=47.0
Q ss_pred HHHHHHHhhhhhcccCcchhhh-hhhhhHH-HHHHhhcCChHHHHHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCC
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAV-FASASEM-FSKRNINCTIEESLERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l-~~~~sd~-~~~~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~ 168 (327)
.++++.++.+.+. .+..+++ +.+.|+. +...+-+.+ .+.+.++++.+++. ++.+... .++|.|.+
T Consensus 247 ~~ell~~m~~~~~--~~~~l~lgvQSgsd~vLk~m~R~~t----~~~~~~~i~~lr~~~p~i~i~td--~IvGfPgE--- 315 (449)
T PRK14332 247 PDHLLSLMAKNPR--FCPNIHLPLQAGNTRVLEEMKRSYS----KEEFLDVVKEIRNIVPDVGITTD--IIVGFPNE--- 315 (449)
T ss_pred CHHHHHHHHhCCC--ccceEEECCCcCCHHHHHhhCCCCC----HHHHHHHHHHHHHhCCCCEEEEE--EEeeCCCC---
Confidence 3556666544321 2344444 2333443 223332334 34466677777776 4554443 34566654
Q ss_pred ChHHHHHHHHHHHHcCcCEE
Q psy12516 169 PPHNVTRVATALYKMGCYEI 188 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i 188 (327)
+.+.+.+..+.+.+.+.+.+
T Consensus 316 T~edf~~tl~~v~~l~~~~~ 335 (449)
T PRK14332 316 TEEEFEDTLAVVREVQFDMA 335 (449)
T ss_pred CHHHHHHHHHHHHhCCCCEE
Confidence 56788888888888888754
No 376
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=83.79 E-value=21 Score=32.93 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCC-----------ccCHHHHHHHHHHHHHhcCCCeEEEeecCC------cCcHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIG-----------VGTPGTMRLMLEDVLTVIPADRLAVHCHDT------YGQAL 230 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G-----------~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~------~g~a~ 230 (327)
-++..+.+.++.+.++|+..|.|-|.++ +..+++....++..++...+.++.+=.--| +--|+
T Consensus 85 G~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI 164 (285)
T TIGR02317 85 GEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAI 164 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHH
Confidence 4588889999999999999999999873 345677777777777765443444333222 23456
Q ss_pred HHHHHHHHhcCceee
Q psy12516 231 ANILTAMEFGISVFD 245 (327)
Q Consensus 231 an~l~a~~~G~~~vd 245 (327)
.-+.+..++|||.|=
T Consensus 165 ~Ra~ay~~AGAD~vf 179 (285)
T TIGR02317 165 ERAKAYVEAGADMIF 179 (285)
T ss_pred HHHHHHHHcCCCEEE
Confidence 677778899998653
No 377
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=83.78 E-value=40 Score=32.32 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=60.3
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCC-CeEEEeecCCcCcH-HHHHHHHHHhcCce
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQA-LANILTAMEFGISV 243 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~-~~l~~H~Hn~~g~a-~an~l~a~~~G~~~ 243 (327)
+-..++.-.+.++.+.+.+.+.+.|.--.......++.+++..++..+|. .|..+ +|.+ ..+.+.++..|+|.
T Consensus 190 Gg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~kPryl-----~Gvg~P~~i~~~v~~GvD~ 264 (366)
T PRK00112 190 GGVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPEDKPRYL-----MGVGTPEDLVEGVARGVDM 264 (366)
T ss_pred CCccHHHHHHHHHHHHhCCCceeEeccccCCCCHHHHHHHHHHHHhhCCCcCCeEe-----cCCCCHHHHHHHHHcCCCE
Confidence 34566666777888889999999998854445788899999999988864 44433 3555 47889999999999
Q ss_pred eeecccc
Q psy12516 244 FDSSIAG 250 (327)
Q Consensus 244 vd~s~~G 250 (327)
+|++.-=
T Consensus 265 FD~~~p~ 271 (366)
T PRK00112 265 FDCVMPT 271 (366)
T ss_pred EeeCCcc
Confidence 9987753
No 378
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=83.77 E-value=26 Score=31.31 Aligned_cols=101 Identities=12% Similarity=0.022 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~ 214 (327)
.+.+.++++.+++.+..|.+-+.- + .+.....++++.+.+.|++.|.+-.... ..|.--.+.++.+++.++
T Consensus 120 p~~l~~iv~av~~~~~PVsvKiR~--~------~~~~~~~~~a~~l~~aGad~i~Vd~~~~-g~~~a~~~~I~~i~~~~~ 190 (231)
T TIGR00736 120 KELLKEFLTKMKELNKPIFVKIRG--N------CIPLDELIDALNLVDDGFDGIHVDAMYP-GKPYADMDLLKILSEEFN 190 (231)
T ss_pred HHHHHHHHHHHHcCCCcEEEEeCC--C------CCcchHHHHHHHHHHcCCCEEEEeeCCC-CCchhhHHHHHHHHHhcC
Confidence 455677777777777776543331 1 2345678999999999999998832211 122234667888888775
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.+||-- |.-=.....+++.++.||+-|-.+
T Consensus 191 ~ipIIg---NGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 191 DKIIIG---NNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred CCcEEE---ECCcCCHHHHHHHHHhCCCeEEEc
Confidence 445433 111112355677777888877653
No 379
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=83.73 E-value=20 Score=32.27 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=36.9
Q ss_pred CCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeec
Q psy12516 163 PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223 (327)
Q Consensus 163 ~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~H 223 (327)
|+.+--+++.+.+.++++.+.|++.|.|-|.. ++.+.++.+++.- ++|-.|+-
T Consensus 81 ~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~--i~ViaRtd 133 (240)
T cd06556 81 PFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE------WHIETLQMLTAAA--VPVIAHTG 133 (240)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH------HHHHHHHHHHHcC--CeEEEEeC
Confidence 33333366899999999999999999999963 4455667776542 45555543
No 380
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=83.69 E-value=46 Score=32.60 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=49.2
Q ss_pred HHHHHHHhhhhhcccCcchhhh-hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCC
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAV-FASASEMFSKRNINCTIEESLERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~ 169 (327)
.++++..+.+.+ .++..+.+ +.+.|+...+. .++. ...+.+.++++.+++. |+.+...++ +|.|.+ +
T Consensus 245 ~~ell~~l~~~~--~~~~~l~igiqSgs~~vLk~-m~R~--~~~~~~~~~i~~lr~~~~gi~v~~~~I--vG~PgE---T 314 (444)
T PRK14325 245 TDDLIEAYADLP--KLVPFLHLPVQSGSDRILKA-MNRG--HTALEYKSIIRKLRAARPDIAISSDFI--VGFPGE---T 314 (444)
T ss_pred CHHHHHHHHcCC--cccCceeccCCcCCHHHHHh-CCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE--EECCCC---C
Confidence 355666554432 12444444 23444433321 1221 1245677788888887 666665544 566654 5
Q ss_pred hHHHHHHHHHHHHcCcCEEE
Q psy12516 170 PHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~ 189 (327)
.+.+.+..+.+.+.+.+.+.
T Consensus 315 ~ed~~~tl~~i~~~~~~~~~ 334 (444)
T PRK14325 315 DEDFEATMKLIEDVGFDQSF 334 (444)
T ss_pred HHHHHHHHHHHHhcCCCeee
Confidence 77788888888888877654
No 381
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=83.62 E-value=11 Score=33.04 Aligned_cols=71 Identities=15% Similarity=0.003 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCcc--CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVG--TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~--~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.+.+...++++.+.+.|++.|.+.|--+.. .++ .++.+++.. ++||.+. ++..-..-.-.+.++|++.|.
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~----~~~~i~~~v-~iPi~~~---~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLE----DLRAVREAV-SLPVLRK---DFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHH----HHHHHHHhc-CCCEEEC---CeecCHHHHHHHHHcCCCEEE
Confidence 455678999999999999999998876654 453 455555543 4677753 233334456778899999986
Q ss_pred e
Q psy12516 246 S 246 (327)
Q Consensus 246 ~ 246 (327)
.
T Consensus 100 l 100 (217)
T cd00331 100 L 100 (217)
T ss_pred E
Confidence 4
No 382
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=83.60 E-value=32 Score=30.96 Aligned_cols=91 Identities=24% Similarity=0.287 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHc---CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe-cCCCCccCHHHHHHHHHHHH
Q psy12516 135 LERFSEVVSTALTN---GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVL 210 (327)
Q Consensus 135 i~~~~~~v~~a~~~---Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l-~Dt~G~~~P~~~~~~~~~~~ 210 (327)
+....+.++.+++. |+.|..+ |.+ | ...++++.++|++.|.- +...|....-.-.++++.++
T Consensus 106 lpd~~~tv~aa~~L~~~Gf~vlpy------c~d----d----~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~ 171 (248)
T cd04728 106 LPDPIETLKAAEILVKEGFTVLPY------CTD----D----PVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIII 171 (248)
T ss_pred ccCHHHHHHHHHHHHHCCCEEEEE------eCC----C----HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHH
Confidence 34455566666665 9988532 111 1 35678888999998722 13334322222244555666
Q ss_pred HhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCcee
Q psy12516 211 TVIPADRLAVHCHDTYGQA-LANILTAMEFGISVF 244 (327)
Q Consensus 211 ~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~v 244 (327)
+. +++++-.- -|.. ..-+..|++.|++.|
T Consensus 172 e~-~~vpVI~e----gGI~tpeda~~AmelGAdgV 201 (248)
T cd04728 172 ER-ADVPVIVD----AGIGTPSDAAQAMELGADAV 201 (248)
T ss_pred Hh-CCCcEEEe----CCCCCHHHHHHHHHcCCCEE
Confidence 65 33555442 2333 355678889999864
No 383
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=83.59 E-value=33 Score=30.85 Aligned_cols=138 Identities=16% Similarity=0.244 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCC-hHHHHH---HHHHHHH--cCcCEEEecCCCC-----ccCHHH
Q psy12516 133 ESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVP-PHNVTR---VATALYK--MGCYEISLGDTIG-----VGTPGT 201 (327)
Q Consensus 133 e~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~-~e~l~~---~~~~~~~--~g~~~i~l~Dt~G-----~~~P~~ 201 (327)
..++.+++.++.|++.|....+.- .|. + ...+ .+.+.. ..+.+.+ .|+ .+.+--+.+ ..+|.+
T Consensus 81 ~~~~~l~~~i~~A~~lGa~~vv~h---~g~-~-~~~~~e~~~~~~~~~l~~l~~~~~gv-~l~lEn~~~~~~~~~~~~~~ 154 (273)
T smart00518 81 KSIERLIDEIKRCEELGIKALVFH---PGS-Y-LKQSKEEALNRIIESLNEVIDETKGV-VILLETTAGKGSQIGSTFED 154 (273)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEc---ccc-c-cCCCHHHHHHHHHHHHHHHHhccCCc-EEEEeccCCCCCccCCCHHH
Confidence 446778888888888888753321 111 1 1122 222333 3333332 233 344433322 136777
Q ss_pred HHHHHHHHHHhcCCCeEEE---eecCCcCc------HHHHHHHHHH--hc---Cceeeecccc-----CCCCCCCCCCCC
Q psy12516 202 MRLMLEDVLTVIPADRLAV---HCHDTYGQ------ALANILTAME--FG---ISVFDSSIAG-----LGGCPYARGASG 262 (327)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~---H~Hn~~g~------a~an~l~a~~--~G---~~~vd~s~~G-----~G~~p~~~g~~G 262 (327)
+.+++..+... |.+.+-+ |.|.. |. .....+..+. .| +.+|+..-+. -+.+-.+.| .|
T Consensus 155 ~~~ll~~v~~~-~~~g~~lD~gH~~~~-g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~~~g~~~d~H~~~G-~G 231 (273)
T smart00518 155 LKEIIDLIKEL-DRIGVCIDTCHIFAA-GYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKIELGSGKDRHENLG-EG 231 (273)
T ss_pred HHHHHHhcCCC-CCeEEEEEccchhhc-cCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCCccCCCCccccCCC-CC
Confidence 77777766431 2222222 54432 22 1233333221 23 4445444321 111233344 68
Q ss_pred CccHHHHHHHHHhCCCC
Q psy12516 263 NVATEDLVYMLEGMGIE 279 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~ 279 (327)
..+.+.+...|+..+++
T Consensus 232 ~id~~~~~~~l~~~~~~ 248 (273)
T smart00518 232 YIGFEPFRLLMADKRFD 248 (273)
T ss_pred CCChHHHHHHhhChhhc
Confidence 99999999988875554
No 384
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=83.57 E-value=25 Score=29.49 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcC-CeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCC
Q psy12516 135 LERFSEVVSTALTNG-IRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDT 193 (327)
Q Consensus 135 i~~~~~~v~~a~~~G-i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt 193 (327)
.++..+.++.+++.| +.+...+.. +-+ ..+.+.+.++++.+.+.|++.|.+..-
T Consensus 135 ~~~~~~~i~~~~~~g~~~v~~~~~~--g~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~ 189 (216)
T smart00729 135 VEDVLEAVEKLREAGPIKVSTDLIV--GLP---GETEEDFEETLKLLKELGPDRVSIFPL 189 (216)
T ss_pred HHHHHHHHHHHHHhCCcceEEeEEe--cCC---CCCHHHHHHHHHHHHHcCCCeEEeeee
Confidence 466777888888999 776655443 222 247789999999999999997765443
No 385
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=83.44 E-value=28 Score=33.36 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=15.7
Q ss_pred HHHHHHHHHHc-CcCEEEecCCCCccCHHH
Q psy12516 173 VTRVATALYKM-GCYEISLGDTIGVGTPGT 201 (327)
Q Consensus 173 l~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~ 201 (327)
+.++++.+.+. |...+.+ .|.|.+.++.
T Consensus 123 l~eli~~l~~~~gi~~i~i-tTNG~lL~~~ 151 (373)
T PLN02951 123 IEDICLQLSSLKGLKTLAM-TTNGITLSRK 151 (373)
T ss_pred HHHHHHHHHhcCCCceEEE-eeCcchHHHH
Confidence 55566666554 5544444 4667665544
No 386
>PRK00208 thiG thiazole synthase; Reviewed
Probab=83.44 E-value=29 Score=31.28 Aligned_cols=90 Identities=23% Similarity=0.283 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHc---CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec--CCCCccCHHHHHHHHHHH
Q psy12516 135 LERFSEVVSTALTN---GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG--DTIGVGTPGTMRLMLEDV 209 (327)
Q Consensus 135 i~~~~~~v~~a~~~---Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~--Dt~G~~~P~~~~~~~~~~ 209 (327)
+....+.++.+++. |+.|..+ |.+ + ...++++.++|++.| .+ ...|...+-.-.++++.+
T Consensus 106 lpd~~~tv~aa~~L~~~Gf~vlpy------c~~----d----~~~ak~l~~~G~~~v-mPlg~pIGsg~gi~~~~~i~~i 170 (250)
T PRK00208 106 LPDPIETLKAAEILVKEGFVVLPY------CTD----D----PVLAKRLEEAGCAAV-MPLGAPIGSGLGLLNPYNLRII 170 (250)
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEE------eCC----C----HHHHHHHHHcCCCEe-CCCCcCCCCCCCCCCHHHHHHH
Confidence 33455556666665 9988532 111 1 356788889999987 33 334433222224446666
Q ss_pred HHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCcee
Q psy12516 210 LTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVF 244 (327)
Q Consensus 210 ~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~v 244 (327)
++. +++++-.-. |.. -.-+..|++.|++.|
T Consensus 171 ~e~-~~vpVIvea----GI~tpeda~~AmelGAdgV 201 (250)
T PRK00208 171 IEQ-ADVPVIVDA----GIGTPSDAAQAMELGADAV 201 (250)
T ss_pred HHh-cCCeEEEeC----CCCCHHHHHHHHHcCCCEE
Confidence 665 345555432 332 345677888998864
No 387
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=83.24 E-value=10 Score=34.83 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=60.6
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCCCeEEEee-cCCcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPADRLAVHC-HDTYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~~~l~~H~-Hn~~g~a~an~l~a~~~G~ 241 (327)
+..+.+.+.++++.+.+.|++.|.++-|+| .++.++-.++++.+.+.... +-++. +++.--++.-+..|.++|+
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~--vi~gvg~~~~~~ai~~a~~a~~~Ga 92 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDK--VIFQVGSLNLEESIELARAAKSFGI 92 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCC--EEEEeCcCCHHHHHHHHHHHHHcCC
Confidence 568888999999999999999999999988 47788888888877776543 44443 4556666777788888898
Q ss_pred ceeee
Q psy12516 242 SVFDS 246 (327)
Q Consensus 242 ~~vd~ 246 (327)
+.+=.
T Consensus 93 d~v~v 97 (279)
T cd00953 93 YAIAS 97 (279)
T ss_pred CEEEE
Confidence 87654
No 388
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=83.22 E-value=17 Score=33.28 Aligned_cols=44 Identities=5% Similarity=-0.027 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHcCcCEEEec-CCCCccCHHHHHHHHHHHHHh
Q psy12516 169 PPHNVTRVATALYKMGCYEISLG-DTIGVGTPGTMRLMLEDVLTV 212 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~~~~~~~~~~~~ 212 (327)
+.++..++++.+.+.|+|.+.+. =.....+++++.+.++.+.+.
T Consensus 80 ~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~ 124 (284)
T cd00950 80 NTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA 124 (284)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc
Confidence 34445555555555555533322 222223444444444444443
No 389
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=83.15 E-value=38 Score=31.25 Aligned_cols=197 Identities=15% Similarity=0.120 Sum_probs=105.1
Q ss_pred EecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHH---HHH-HHcCCcEEEecccCCCCCCCCCCccCCC
Q psy12516 16 SLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI---LTA-MEFGISVFDSSIAGLGGCPYARGASGNV 91 (327)
Q Consensus 16 ~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~---~~a-~~aG~~~id~~~~glg~~p~~~~~~gn~ 91 (327)
.++|. |.++..++.+.++.+.+..+ +|+..-.=+-+|. ..|+ +.. .++|+.-|..-=.-... +.|+.
T Consensus 49 G~pD~-g~lt~~e~~~~~~~I~~~~~-iPviaD~d~GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~pK------~cgh~ 119 (285)
T TIGR02317 49 GLPDL-GITTLDEVAEDARRITRVTD-LPLLVDADTGFGE-AFNVARTVREMEDAGAAAVHIEDQVLPK------RCGHL 119 (285)
T ss_pred CCCCC-CCCCHHHHHHHHHHHHhccC-CCEEEECCCCCCC-HHHHHHHHHHHHHcCCeEEEEecCCCcc------ccCCC
Confidence 35665 57888888888888887764 7888888787777 5554 222 26777665422111000 11221
Q ss_pred cHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC-CCCCh
Q psy12516 92 ATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE-GAVPP 170 (327)
Q Consensus 92 ~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~-~r~~~ 170 (327)
....+ .+.++..++++.+.+... +..+. +..- .|. .....
T Consensus 120 ~g~~l--------------------------------v~~ee~~~kI~Aa~~a~~--~~d~~--IiAR---TDa~~~~g~ 160 (285)
T TIGR02317 120 PGKEL--------------------------------VSREEMVDKIAAAVDAKR--DEDFV--IIAR---TDARAVEGL 160 (285)
T ss_pred CCccc--------------------------------cCHHHHHHHHHHHHHhcc--CCCEE--EEEE---cCcccccCH
Confidence 10000 012222444443333222 22222 1111 111 12345
Q ss_pred HHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE--eecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 171 HNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV--HCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~--H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
++.++-++...++|+|.|.+. |.-+++++.++.+. ++ .|+-+ -.....+ .-+.-..-+.|+++|-...
T Consensus 161 deAI~Ra~ay~~AGAD~vfi~---g~~~~e~i~~~~~~----i~-~Pl~~n~~~~~~~p--~~s~~eL~~lGv~~v~~~~ 230 (285)
T TIGR02317 161 DAAIERAKAYVEAGADMIFPE---ALTSLEEFRQFAKA----VK-VPLLANMTEFGKTP--LFTADELREAGYKMVIYPV 230 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEeC---CCCCHHHHHHHHHh----cC-CCEEEEeccCCCCC--CCCHHHHHHcCCcEEEEch
Confidence 677777888889999999874 45667776655554 44 35532 2222111 1123455577999887654
Q ss_pred ccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q psy12516 249 AGLGGCPYARGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 249 ~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
..+ ++-...+++.+..++..|.
T Consensus 231 ~~~--------~aa~~a~~~~~~~l~~~g~ 252 (285)
T TIGR02317 231 TAF--------RAMNKAAEAVYNEIKEHGT 252 (285)
T ss_pred HHH--------HHHHHHHHHHHHHHHHcCC
Confidence 433 3456667777777776554
No 390
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.11 E-value=5.3 Score=35.21 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=94.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.+.|++.|.+. +.+|. -.+.++.+++.+|+..+|..+--+. .....|+++|++.+=+ .++.
T Consensus 31 ~i~~al~~~Gi~~iEit----l~~~~-~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~Fivs--P~~~-- 97 (212)
T PRK05718 31 PLAKALVAGGLPVLEVT----LRTPA-ALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFIVS--PGLT-- 97 (212)
T ss_pred HHHHHHHHcCCCEEEEe----cCCcc-HHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEEEC--CCCC--
Confidence 57788899999998887 55664 4455788888889888998888776 6678888999988751 1111
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVG 161 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g 161 (327)
. +++++|++.++...
T Consensus 98 -----------~----------------------------------------------~vi~~a~~~~i~~i-------- 112 (212)
T PRK05718 98 -----------P----------------------------------------------PLLKAAQEGPIPLI-------- 112 (212)
T ss_pred -----------H----------------------------------------------HHHHHHHHcCCCEe--------
Confidence 1 23555666666542
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc-CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhc
Q psy12516 162 CPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG-TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFG 240 (327)
Q Consensus 162 ~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~-~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G 240 (327)
| +-.+|.+ +.++.++|++.+.+-+. +.. .| ..++.++.-+|.+++-. +-|....|.-.-+.+|
T Consensus 113 -P--G~~TptE----i~~a~~~Ga~~vKlFPa-~~~gg~----~~lk~l~~p~p~~~~~p----tGGV~~~ni~~~l~ag 176 (212)
T PRK05718 113 -P--GVSTPSE----LMLGMELGLRTFKFFPA-EASGGV----KMLKALAGPFPDVRFCP----TGGISPANYRDYLALP 176 (212)
T ss_pred -C--CCCCHHH----HHHHHHCCCCEEEEccc-hhccCH----HHHHHHhccCCCCeEEE----eCCCCHHHHHHHHhCC
Confidence 1 2245544 34577788888887542 111 22 35666676667655543 4577777888888887
No 391
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=83.10 E-value=9 Score=35.10 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=78.2
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEe--c-CCCC--ccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHh-c
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISL--G-DTIG--VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF-G 240 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l--~-Dt~G--~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~-G 240 (327)
+.+++++.+-+.+..++|+..+-+ = |..| ...|+.+.+.+..+|+..|++.+..=+-.-.++....=++.++. .
T Consensus 22 P~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~ 101 (272)
T PF05853_consen 22 PITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWK 101 (272)
T ss_dssp --SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcC
Confidence 578899999999999999885433 2 4445 58899999999999999888777765555445555544455544 3
Q ss_pred Cce--eeeccccCC--CCCCCCCCCCCccHHHHHHHHHhCCCCCC---CChhhHHHHHHHHHH
Q psy12516 241 ISV--FDSSIAGLG--GCPYARGASGNVATEDLVYMLEGMGIETG---ADLTSLLRTGHYICG 296 (327)
Q Consensus 241 ~~~--vd~s~~G~G--~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~---~d~~~l~~~~~~~~~ 296 (327)
-+. +|..-..++ ...| ......+++++..+++.|+.+. +|...+..+..++++
T Consensus 102 pd~asl~~gs~n~~~~~~~~---~n~~~~~~~~~~~~~e~Gi~pe~ev~d~~~l~~~~~l~~~ 161 (272)
T PF05853_consen 102 PDMASLNPGSMNFGTRDRVY---INTPADARELARRMRERGIKPEIEVFDPGHLRNARRLIEK 161 (272)
T ss_dssp -SEEEEE-S-EEESGGCSEE------HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHT
T ss_pred CCeEEecccccccccCCcee---cCCHHHHHHHHHHHHHcCCeEEEEEEcHHHHHHHHHHHHC
Confidence 333 232222222 1000 1224556777888888888765 688888888777665
No 392
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.09 E-value=6.1 Score=36.26 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=52.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~g 77 (327)
|-++.+.++|+|.|.+ |. ++|..+++.++.++...|.+.+..-. |....|+.+..+.|++.|-++..-
T Consensus 193 eea~~A~~~GaDiI~L-Dn---~~~e~l~~~v~~~~~~~~~~~ieAsG----gIt~~ni~~ya~~GvD~IsvG~l~ 260 (273)
T PRK05848 193 EEAKNAMNAGADIVMC-DN---MSVEEIKEVVAYRNANYPHVLLEASG----NITLENINAYAKSGVDAISSGSLI 260 (273)
T ss_pred HHHHHHHHcCCCEEEE-CC---CCHHHHHHHHHHhhccCCCeEEEEEC----CCCHHHHHHHHHcCCCEEEeChhh
Confidence 5678889999998886 65 59999999999876656655555543 345678888999999999977543
No 393
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=83.05 E-value=24 Score=32.13 Aligned_cols=167 Identities=16% Similarity=0.268 Sum_probs=93.0
Q ss_pred HHHHHHHHcCcCEEEe----cCCc---------------cccCHHHHHHHHHHHHhhcCCCeeEEEe-cCc-cchHHHHH
Q psy12516 2 KVASALYKMGCYEISL----GDTI---------------GVGTPGTMRLMLEDVLTVIPADRLAVHC-HDT-YGQALANI 60 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~----~Dt~---------------G~~~p~~~~~~~~~~~~~~~~~~~~~H~-h~~-~g~~~~~~ 60 (327)
++++.+.+.|+|.|.| .|.. .-.+...+-++++.+++..+..|+.+=+ -|. +..++.+.
T Consensus 28 ~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F 107 (259)
T PF00290_consen 28 EILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERF 107 (259)
T ss_dssp HHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHH
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHH
Confidence 6788899999996554 3443 2345666677778888556667765522 222 44556666
Q ss_pred HHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHH
Q psy12516 61 LTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFS 139 (327)
Q Consensus 61 ~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~ 139 (327)
++.+ ++|++-+= +..| +.|+- .-+.....+.|++.+.+..+.+. -++++
T Consensus 108 ~~~~~~aGvdGlI--ipDL-------------P~ee~-~~~~~~~~~~gl~~I~lv~p~t~--------------~~Ri~ 157 (259)
T PF00290_consen 108 FKEAKEAGVDGLI--IPDL-------------PPEES-EELREAAKKHGLDLIPLVAPTTP--------------EERIK 157 (259)
T ss_dssp HHHHHHHTEEEEE--ETTS-------------BGGGH-HHHHHHHHHTT-EEEEEEETTS---------------HHHHH
T ss_pred HHHHHHcCCCEEE--EcCC-------------ChHHH-HHHHHHHHHcCCeEEEEECCCCC--------------HHHHH
Confidence 5555 67876433 2222 22222 12334556688888888777544 34455
Q ss_pred HHHHHHHHcCCeEEEEEeeeccCCCCCCC-ChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHH
Q psy12516 140 EVVSTALTNGIRVRGYISCVVGCPYEGAV-PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLML 206 (327)
Q Consensus 140 ~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~-~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~ 206 (327)
.+.+.+ .|+ +|+....|.. ..+. -+..+.+..+.+.+.. .+-++--+|..+|+++..+.
T Consensus 158 ~i~~~a--~gF---iY~vs~~GvT-G~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~ 217 (259)
T PF00290_consen 158 KIAKQA--SGF---IYLVSRMGVT-GSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA 217 (259)
T ss_dssp HHHHH---SSE---EEEESSSSSS-STTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH
T ss_pred HHHHhC--CcE---EEeeccCCCC-CCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH
Confidence 555443 343 2332222221 1232 3567888888888776 33455578999999987765
No 394
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=83.04 E-value=54 Score=32.85 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=48.0
Q ss_pred HHHHHHHhhhhhcccCcchhhh-hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCC
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAV-FASASEMFSKRNINCTIEESLERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~ 169 (327)
.++++.++.+.+. ++..+++ +.+.|+...+. .++. ...+.+.++++.+++. |+.+...++ +|.|.+ +
T Consensus 253 ~~ell~~m~~~g~--~~~~l~lglQSgsd~iLk~-m~R~--~t~~~~~~~v~~lr~~~~~i~i~~~~I--vGfPgE---T 322 (502)
T PRK14326 253 TDDVIEAMAETPN--VCPQLHMPLQSGSDRVLRA-MRRS--YRSERFLGILEKVRAAMPDAAITTDII--VGFPGE---T 322 (502)
T ss_pred CHHHHHHHHhcCC--cCCcEEeccCCCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeEEEEEE--EECCCC---C
Confidence 4567766654321 1344444 33445543332 2221 1234566777777775 666665444 566765 5
Q ss_pred hHHHHHHHHHHHHcCcCEE
Q psy12516 170 PHNVTRVATALYKMGCYEI 188 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i 188 (327)
.+.+.+..+.+.+.+.+.+
T Consensus 323 ~edf~~Tl~~i~~~~~~~~ 341 (502)
T PRK14326 323 EEDFQATLDVVREARFSSA 341 (502)
T ss_pred HHHHHHHHHHHHHcCCCEE
Confidence 6777788888888877643
No 395
>PRK05926 hypothetical protein; Provisional
Probab=83.00 E-value=12 Score=35.96 Aligned_cols=75 Identities=9% Similarity=0.118 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCCCeEEEeec---------CCcCcHHHHHH
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRLAVHCH---------DTYGQALANIL 234 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~~~l~~H~H---------n~~g~a~an~l 234 (327)
..++|++.+.++.. +.|++++.|.. |.- ..+.+.++++.+++.+|+ +.+|.- +..|+...-.+
T Consensus 98 ~ls~eeI~~~a~~a-~~G~~ei~iv~--G~~p~~~~e~~~e~i~~Ik~~~p~--i~i~a~s~~Ei~~~~~~~~~~~~e~l 172 (370)
T PRK05926 98 FYTPDQLVQSIKEN-PSPITETHIVA--GCFPSCNLAYYEELFSKIKQNFPD--LHIKALTAIEYAYLSKLDNLPVKEVL 172 (370)
T ss_pred cCCHHHHHHHHHHH-hcCCCEEEEEe--CcCCCCCHHHHHHHHHHHHHhCCC--eeEEECCHHHHHHHHhhcCCCHHHHH
Confidence 45789999999888 79999999994 543 346778889999998885 444432 34466666766
Q ss_pred HHH-HhcCceeee
Q psy12516 235 TAM-EFGISVFDS 246 (327)
Q Consensus 235 ~a~-~~G~~~vd~ 246 (327)
..+ ++|.+.+..
T Consensus 173 ~~LkeAGl~~~~g 185 (370)
T PRK05926 173 QTLKIAGLDSIPG 185 (370)
T ss_pred HHHHHcCcCccCC
Confidence 666 669887654
No 396
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=82.98 E-value=29 Score=29.78 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhcC
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~~ 214 (327)
...++.+++.|+++...++ + ..+.+.+.++ ..++|.+.+ +-+.|...+....+.++.+++..+
T Consensus 94 ~~~~~~~~~~g~~~~~~~~-----~---~t~~e~~~~~-----~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~ 160 (210)
T TIGR01163 94 HRLLQLIKDLGAKAGIVLN-----P---ATPLEFLEYV-----LPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMID 160 (210)
T ss_pred HHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHH-----HhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHH
Confidence 4455777778887643221 1 1233333322 124676655 333443223333345566655432
Q ss_pred ----CCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 215 ----ADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 215 ----~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
..++.+ ..|....|.-..++.|++.+=+
T Consensus 161 ~~~~~~~i~v----~GGI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 161 ENGLSILIEV----DGGVNDDNARELAEAGADILVA 192 (210)
T ss_pred hcCCCceEEE----ECCcCHHHHHHHHHcCCCEEEE
Confidence 234433 3377788888888999987543
No 397
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=82.58 E-value=19 Score=33.42 Aligned_cols=77 Identities=9% Similarity=0.213 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCc-cCHHHHHHHHHHHHHhcCCCeEEEeec---------CCcCcHHHHHHHH
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGV-GTPGTMRLMLEDVLTVIPADRLAVHCH---------DTYGQALANILTA 236 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~~~~l~~H~H---------n~~g~a~an~l~a 236 (327)
..++|++.+.++.+.+.|+++|.|.+-... ..++.+.++++.+++..|. +.+|+= ...|+.....+..
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~--i~~~~~s~~e~~~~~~~~g~~~~e~l~~ 112 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPD--VHIHAFSPMEVYFLAKNEGLSIEEVLKR 112 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 578899999999999999999999843222 4567788999999988764 333321 2346555565655
Q ss_pred H-HhcCceee
Q psy12516 237 M-EFGISVFD 245 (327)
Q Consensus 237 ~-~~G~~~vd 245 (327)
+ ++|++.+.
T Consensus 113 LkeAGl~~i~ 122 (309)
T TIGR00423 113 LKKAGLDSMP 122 (309)
T ss_pred HHHcCCCcCC
Confidence 5 67998774
No 398
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.32 E-value=34 Score=30.09 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe--cCCCCccCHHHHHHHHHHHHHhcCCC
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL--GDTIGVGTPGTMRLMLEDVLTVIPAD 216 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~~~~~~~~~~~~ 216 (327)
.++++++++.|+.+- | +-.+++++.+ +.++|+|.|.+ ++..| |. .++.++..+|++
T Consensus 99 ~~v~~~~~~~~i~~i---------P--G~~T~~E~~~----A~~~Gad~vklFPa~~~G---~~----~ik~l~~~~p~i 156 (213)
T PRK06552 99 RETAKICNLYQIPYL---------P--GCMTVTEIVT----ALEAGSEIVKLFPGSTLG---PS----FIKAIKGPLPQV 156 (213)
T ss_pred HHHHHHHHHcCCCEE---------C--CcCCHHHHHH----HHHcCCCEEEECCcccCC---HH----HHHHHhhhCCCC
Confidence 456888999999753 1 2356666543 45699999888 34333 44 366667777766
Q ss_pred eEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 217 RLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 217 ~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
++.. .-|....|.-.-+++|++.+-
T Consensus 157 p~~a----tGGI~~~N~~~~l~aGa~~va 181 (213)
T PRK06552 157 NVMV----TGGVNLDNVKDWFAAGADAVG 181 (213)
T ss_pred EEEE----ECCCCHHHHHHHHHCCCcEEE
Confidence 6553 457788999999999988653
No 399
>PLN02433 uroporphyrinogen decarboxylase
Probab=82.31 E-value=5.3 Score=37.84 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCcCEEEecCCCC-ccCHHHHHHHH--------HHHHHhcCCCeEEEeecCCc
Q psy12516 173 VTRVATALYKMGCYEISLGDTIG-VGTPGTMRLML--------EDVLTVIPADRLAVHCHDTY 226 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~~~~~~--------~~~~~~~~~~~l~~H~Hn~~ 226 (327)
+.++++...++|++.+.+.|+.+ .++|++..+++ ..+++..+..++.+|.+.+.
T Consensus 181 ~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~ 243 (345)
T PLN02433 181 VIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG 243 (345)
T ss_pred HHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH
Confidence 34455555678999999999555 67887776554 23333334567888988763
No 400
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=82.21 E-value=9.3 Score=35.91 Aligned_cols=98 Identities=20% Similarity=0.203 Sum_probs=68.6
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.|.+...+.++++.++|++.++++= -+ .+-.+-+..+++..+ +||..-.|-|+-+| +.|+++|++.+---
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvav----p~-~~~A~al~~I~~~~~-iPlVADIHFd~~lA----l~a~~~g~dkiRIN 100 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTV----PD-RESAAAFEAIKEGTN-VPLVADIHFDYRLA----ALAMAKGVAKVRIN 100 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcC----CC-HHHHHhHHHHHhCCC-CCEEEeeCCCcHHH----HHHHHhccCeEEEC
Confidence 5677788888889999999776632 11 355667888998877 68998888887665 78899999876531
Q ss_pred cccCCCCCCCCCCCCCc----cHHHHHHHHHhCCC--CCCCChhhHH
Q psy12516 248 IAGLGGCPYARGASGNV----ATEDLVYMLEGMGI--ETGADLTSLL 288 (327)
Q Consensus 248 ~~G~G~~p~~~g~~Gn~----~~e~~~~~l~~~g~--~~~~d~~~l~ 288 (327)
.||. -+++++...++.|+ +.|+|--.|.
T Consensus 101 -------------PGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~ 134 (346)
T TIGR00612 101 -------------PGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLE 134 (346)
T ss_pred -------------CCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCc
Confidence 3343 45566777776554 4566765554
No 401
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=82.17 E-value=8.2 Score=36.35 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=48.4
Q ss_pred HHHHHHHHcCc--CEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGC--YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~--~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.+.++.++|+ |.|.+ |++- ..-..+.++++.+++.+|++++-.---. ....+..++++|++.+.++..
T Consensus 100 ~~~~~Lv~ag~~~d~i~i-D~a~-gh~~~~~e~I~~ir~~~p~~~vi~g~V~----t~e~a~~l~~aGad~i~vg~~ 170 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITI-DIAH-GHSDSVINMIQHIKKHLPETFVIAGNVG----TPEAVRELENAGADATKVGIG 170 (326)
T ss_pred HHHHHHHhcCCCCCEEEE-ECCC-CchHHHHHHHHHHHhhCCCCeEEEEecC----CHHHHHHHHHcCcCEEEECCC
Confidence 56788999965 97776 4442 3345677889999999987665443222 245668888999999886654
No 402
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.13 E-value=39 Score=30.66 Aligned_cols=90 Identities=18% Similarity=0.140 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCC
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 253 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~ 253 (327)
.++.+.+.++|++.+.++| +.+++..+++..+++. . +.+.+-+-.+.--.....+++...|.=++ .++.|..+
T Consensus 107 e~f~~~~~~aGvdGviipD----Lp~ee~~~~~~~~~~~-g-l~~I~lvap~t~~eri~~i~~~s~gfIY~-vs~~GvTG 179 (258)
T PRK13111 107 ERFAADAAEAGVDGLIIPD----LPPEEAEELRAAAKKH-G-LDLIFLVAPTTTDERLKKIASHASGFVYY-VSRAGVTG 179 (258)
T ss_pred HHHHHHHHHcCCcEEEECC----CCHHHHHHHHHHHHHc-C-CcEEEEeCCCCCHHHHHHHHHhCCCcEEE-EeCCCCCC
Confidence 4667788889999999988 4677888888877764 2 22333233333333445555554443332 36666443
Q ss_pred CCCCCCCC-CCccHHHHHHHHHh
Q psy12516 254 CPYARGAS-GNVATEDLVYMLEG 275 (327)
Q Consensus 254 ~p~~~g~~-Gn~~~e~~~~~l~~ 275 (327)
. ++ -...+++.+..+++
T Consensus 180 ----~-~~~~~~~~~~~i~~vk~ 197 (258)
T PRK13111 180 ----A-RSADAADLAELVARLKA 197 (258)
T ss_pred ----c-ccCCCccHHHHHHHHHh
Confidence 0 11 23457778887776
No 403
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=81.90 E-value=9.7 Score=36.52 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=57.0
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecC--CCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCcee
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGD--TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVF 244 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~D--t~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v 244 (327)
..+++++.+.++.+.+.|+++|.|.. +.-...++.+.++++.+++.+|.+ .++. ..+.......-.++|++++
T Consensus 103 ~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i--~i~~---g~lt~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 103 TLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSV--SIEV---QPLSEEEYAELVELGLDGV 177 (371)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCc--eecc---CCCCHHHHHHHHHcCCCEE
Confidence 35889999999999999999998864 222245688889999999888753 3322 3444455555568999997
Q ss_pred eeccccC
Q psy12516 245 DSSIAGL 251 (327)
Q Consensus 245 d~s~~G~ 251 (327)
...+--.
T Consensus 178 ~i~lET~ 184 (371)
T PRK09240 178 TVYQETY 184 (371)
T ss_pred EEEEecC
Confidence 7666643
No 404
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=81.89 E-value=11 Score=35.74 Aligned_cols=108 Identities=8% Similarity=0.045 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHH-------cCcCEEEecC-CCCccCHHHHHHHHHHHHHhc-CCCeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 171 HNVTRVATALYK-------MGCYEISLGD-TIGVGTPGTMRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 171 e~l~~~~~~~~~-------~g~~~i~l~D-t~G~~~P~~~~~~~~~~~~~~-~~~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
+++..+.+.+.. .+++.|++.+ |--.+.|.++.+++..+++.+ ++.++.+-++-+ .+.........++|+
T Consensus 31 ~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~-~~~~e~l~~l~~~Gv 109 (350)
T PRK08446 31 EYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPN-SATKAWLKGMKNLGV 109 (350)
T ss_pred HHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCCHHHHHHHHHcCC
Confidence 355555555442 1567888887 666788888888888888764 334444444322 122233333346788
Q ss_pred ceeeeccccCCCCCC-CCCCC-CCccHHHHHHHHHhCCCC
Q psy12516 242 SVFDSSIAGLGGCPY-ARGAS-GNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 242 ~~vd~s~~G~G~~p~-~~g~~-Gn~~~e~~~~~l~~~g~~ 279 (327)
++|...+-++-..-+ ..||. ......+.+..+++.|++
T Consensus 110 nRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 110 NRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred CEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 888776665542111 11231 222333444555666664
No 405
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=81.85 E-value=44 Score=31.00 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.+.+.+.++.+++.|+.+.+.++ +|-|.+ +.+.+.+.++.+.+++++.|.+
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI--~GlPge---t~e~~~~t~~~l~~l~~d~i~i 212 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI--LGLPGE---DREEMMETAKIVSLLDVDGIKI 212 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE--ECCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 34567788889999999876655 465654 5688889999999999986653
No 406
>PRK02227 hypothetical protein; Provisional
Probab=81.84 E-value=20 Score=32.10 Aligned_cols=99 Identities=19% Similarity=0.199 Sum_probs=67.7
Q ss_pred HHHHHHcCcCEEEecCC----CCccCHHHHHHHHHHHHHhcCCCeEEEeecC---CcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 177 ATALYKMGCYEISLGDT----IGVGTPGTMRLMLEDVLTVIPADRLAVHCHD---TYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 177 ~~~~~~~g~~~i~l~Dt----~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn---~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
+..+.+.|+|.|-++|- .|-..|.-+++++..+... .+++.-.=| +.|.....++.+...|+|+|-..+.
T Consensus 13 A~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~---~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~ 89 (238)
T PRK02227 13 ALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGR---KPVSATIGDVPYKPGTISLAALGAAATGADYVKVGLY 89 (238)
T ss_pred HHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCC---CCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEcCC
Confidence 34566789999999984 5678899888888777643 344432222 3366777778888899999999887
Q ss_pred cCCCCC--------------------------CC-CCCCCCccHHHHHHHHHhCCC
Q psy12516 250 GLGGCP--------------------------YA-RGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 250 G~G~~p--------------------------~~-~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
|...-+ |+ .+|.|.++.+++.....+.|+
T Consensus 90 ~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf 145 (238)
T PRK02227 90 GGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGF 145 (238)
T ss_pred CCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCC
Confidence 654210 22 236677778888877766543
No 407
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=81.80 E-value=31 Score=31.88 Aligned_cols=143 Identities=16% Similarity=0.171 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE-EecCCCC-ccC-HHHHHHHHHHHHHhc
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI-SLGDTIG-VGT-PGTMRLMLEDVLTVI 213 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i-~l~Dt~G-~~~-P~~~~~~~~~~~~~~ 213 (327)
.++++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+...| .+....- .+. ...+..++..+.++.
T Consensus 5 ~~k~lL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~ 74 (286)
T PRK08610 5 SMKEMLIDAKENGYAVGQ-----YN-----LNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDL 74 (286)
T ss_pred cHHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHc
Confidence 367788899999987642 32 2578899999999999987754 4433322 122 344677777777666
Q ss_pred C-CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeecccc----------------------------CCCCCCCCCC--
Q psy12516 214 P-ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIAG----------------------------LGGCPYARGA-- 260 (327)
Q Consensus 214 ~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~G----------------------------~G~~p~~~g~-- 260 (327)
. .+|+.+|. |.|........|+++|.+- +|+|-.. +|+ ..+.
T Consensus 75 ~~~vPV~lHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg---~ed~~~ 149 (286)
T PRK08610 75 NITIPVAIHL--DHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGG---QEDDVV 149 (286)
T ss_pred CCCCCEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCC---ccCCCC
Confidence 4 25777654 5666788888999999864 5776542 221 0000
Q ss_pred ---CCCccHHHHHHHHHhCCCC----------------CCCChhhHHHHHHHH
Q psy12516 261 ---SGNVATEDLVYMLEGMGIE----------------TGADLTSLLRTGHYI 294 (327)
Q Consensus 261 ---~Gn~~~e~~~~~l~~~g~~----------------~~~d~~~l~~~~~~~ 294 (327)
.--++.|+...+.++.|+| +.+|++.|.++.+.+
T Consensus 150 ~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~ 202 (286)
T PRK08610 150 ADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST 202 (286)
T ss_pred CcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH
Confidence 0136788888888765543 457899888887643
No 408
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=81.56 E-value=9.4 Score=35.86 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHH----HHHHHhcCCCeEEEeecCCcCcHHHHHHHH-HHhcCcee
Q psy12516 173 VTRVATALYKMGCYEISLGDTIG---VGTPGTMRLML----EDVLTVIPADRLAVHCHDTYGQALANILTA-MEFGISVF 244 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~----~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a-~~~G~~~v 244 (327)
+.++++...++|++.|.+.|+.+ .++|+...+++ +++.+.+...+..+|++-+.. ..+.. .+.|++.+
T Consensus 182 ~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~cG~~~----~~l~~~~~~g~d~~ 257 (339)
T PRK06252 182 CIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHICGDLT----SILEEMADCGFDGI 257 (339)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEECCCch----HHHHHHHhcCCCee
Confidence 34555666678999999999875 58898887765 344444432146678775542 22333 34577654
No 409
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=81.54 E-value=47 Score=31.15 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc-----CcCEEEe------cCC----CCccCH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM-----GCYEISL------GDT----IGVGTP 199 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~-----g~~~i~l------~Dt----~G~~~P 199 (327)
.+...+.++.+++.|+.+...+..-++ + +.+...+....+.+. |++.+.+ ..| ....++
T Consensus 152 ~~~~l~~i~~a~~~Gi~~~~~~i~G~g---E---t~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~ 225 (336)
T PRK06245 152 PELRLETIENAGKLKIPFTTGILIGIG---E---TWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSL 225 (336)
T ss_pred HHHHHHHHHHHHHcCCceeeeeeeECC---C---CHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCH
Confidence 344577889999999988755553221 1 344444433333333 2443331 122 123567
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 200 GTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
.+..++++..|..+|. .+.+-.--.+|. .-...++.+|++-+++++..-|+ -..+... ..++++++.++++.|+.
T Consensus 226 ~e~l~~ia~~Rl~l~~-~i~i~~~~~~~~--~~~~~~L~~Gand~~g~~~~~~~-~~~~~~~-~~~~~~~~~~i~~~g~~ 300 (336)
T PRK06245 226 EEMLRVVALARLILPP-DISIQVPPNLNR--DTGLLLLDAGADDLGGISPVTKD-YVNPEYP-WPDIEELREILEEAGWP 300 (336)
T ss_pred HHHHHHHHHHHHHCCC-CceEecCCccch--HHHHHHHhcCCccccCCccCCCc-eeCCCCC-CCCHHHHHHHHHHcCCC
Confidence 8888888888888764 232221123333 33456699999999888876554 1111112 35889999999988865
Q ss_pred C
Q psy12516 280 T 280 (327)
Q Consensus 280 ~ 280 (327)
.
T Consensus 301 ~ 301 (336)
T PRK06245 301 L 301 (336)
T ss_pred c
Confidence 4
No 410
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=81.45 E-value=44 Score=30.76 Aligned_cols=78 Identities=14% Similarity=-0.005 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHHHcC--cCEEEec--C--CC--C---ccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHH
Q psy12516 168 VPPHNVTRVATALYKMG--CYEISLG--D--TI--G---VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTA 236 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g--~~~i~l~--D--t~--G---~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a 236 (327)
.+++.+.+.++.+.+.+ +|.|.|- - +. | ...|+.+.++++.+|+... .||.+-.-.+.--...-+..+
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~-~pv~vKi~~~~~~~~~~a~~l 178 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTD-VPVFAKLSPNVTDITEIAKAA 178 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC-CCEEEECCCChhhHHHHHHHH
Confidence 46788899999998763 7766552 1 11 2 2478899999999998764 577766543332334445566
Q ss_pred HHhcCceeee
Q psy12516 237 MEFGISVFDS 246 (327)
Q Consensus 237 ~~~G~~~vd~ 246 (327)
.++|++.|..
T Consensus 179 ~~~G~d~i~v 188 (300)
T TIGR01037 179 EEAGADGLTL 188 (300)
T ss_pred HHcCCCEEEE
Confidence 7899998854
No 411
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=81.37 E-value=67 Score=32.79 Aligned_cols=72 Identities=13% Similarity=-0.008 Sum_probs=44.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+.++++.++|++.+++.=. +.-....++.+.+.+++.--.+|+..-.|-++-.| +.|+++ ++-|-..=+.+|
T Consensus 45 ~Qi~~l~~aGceiVRvtv~-~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A----~~a~~~-v~kiRINPGN~~ 116 (611)
T PRK02048 45 AQAKRIIDAGGEYVRLTTQ-GVREAENLMNINIGLRSQGYMVPLVADVHFNPKVA----DVAAQY-AEKVRINPGNYV 116 (611)
T ss_pred HHHHHHHHcCCCEEEEcCC-CHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHH----HHHHHh-hCCEEECCCcCC
Confidence 5678999999998887521 22223334444444433322388888888888664 566666 776664444554
No 412
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=81.37 E-value=45 Score=30.78 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=44.6
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~i 71 (327)
+.++.+.+.|++.|.+.=|+| .+|.++-.++++.+.+...+ +++-.|.=.+..-++..+..|.++|++.+
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav 103 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGADGY 103 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCCCEE
Confidence 457788899999999998886 56677777777766666543 45544432223333444444455666655
No 413
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=81.35 E-value=21 Score=31.99 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecCC-CC-----ccCHHHHHHHHHHHHHhcCCCeEEEeecCCc--------CcHHHHHH
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGDT-IG-----VGTPGTMRLMLEDVLTVIPADRLAVHCHDTY--------GQALANIL 234 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~Dt-~G-----~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~--------g~a~an~l 234 (327)
++..+.+.++.+.++|+-.|.|-|. .| +..+++..+.++..++...+..+-+=.--|- --++.-..
T Consensus 83 ~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~ 162 (238)
T PF13714_consen 83 DPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAK 162 (238)
T ss_dssp SHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHH
Confidence 4889999999999999999999999 33 4577888888888887654322333222221 23455666
Q ss_pred HHHHhcCceee
Q psy12516 235 TAMEFGISVFD 245 (327)
Q Consensus 235 ~a~~~G~~~vd 245 (327)
+-.++|||.|=
T Consensus 163 aY~eAGAD~if 173 (238)
T PF13714_consen 163 AYAEAGADMIF 173 (238)
T ss_dssp HHHHTT-SEEE
T ss_pred HHHHcCCCEEE
Confidence 77899999654
No 414
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=81.32 E-value=52 Score=31.54 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=35.0
Q ss_pred HHHHHHHcCcCEEEecCCccccCHH---HHHHHHHHHHhhcCCCe-eEEEecCccchHHHHHHHHH-HcCCcEEEecccC
Q psy12516 3 VASALYKMGCYEISLGDTIGVGTPG---TMRLMLEDVLTVIPADR-LAVHCHDTYGQALANILTAM-EFGISVFDSSIAG 77 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~~~p~---~~~~~~~~~~~~~~~~~-~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~g 77 (327)
+++.+.+.|+..|.+. .| .|. ++.++++.+++. ++.. + ...+.|.-+......+ ++|++.|.+++.+
T Consensus 98 ~i~~~~~~Gv~~I~~t--GG--EPllr~dl~eli~~l~~~-~gi~~i---~itTNG~lL~~~~~~L~~aGld~VnISLDs 169 (373)
T PLN02951 98 LAGLFVAAGVDKIRLT--GG--EPTLRKDIEDICLQLSSL-KGLKTL---AMTTNGITLSRKLPRLKEAGLTSLNISLDT 169 (373)
T ss_pred HHHHHHHCCCCEEEEE--CC--CCcchhhHHHHHHHHHhc-CCCceE---EEeeCcchHHHHHHHHHhCCCCeEEEeecc
Confidence 3444556677777663 22 332 244444444432 2221 2 1245555555444444 6777777777776
Q ss_pred CC
Q psy12516 78 LG 79 (327)
Q Consensus 78 lg 79 (327)
+.
T Consensus 170 l~ 171 (373)
T PLN02951 170 LV 171 (373)
T ss_pred CC
Confidence 54
No 415
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=81.27 E-value=41 Score=30.24 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=26.6
Q ss_pred HHHHHHcCcCEEEecCCc----------cccCHHHHHHHHHHHHhhcC
Q psy12516 4 ASALYKMGCYEISLGDTI----------GVGTPGTMRLMLEDVLTVIP 41 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt~----------G~~~p~~~~~~~~~~~~~~~ 41 (327)
++.+.++|+|.|.+.|.. +..+..++...++.+.+..+
T Consensus 25 A~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~ 72 (240)
T cd06556 25 AKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP 72 (240)
T ss_pred HHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC
Confidence 566778899999998876 34455566666666666554
No 416
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=81.15 E-value=8.3 Score=38.62 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=48.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 75 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~ 75 (327)
+.++.+.++|+|.|.+ |++- .....+-+.++++++.+|+.++-.=-..+ ...+..++++|++.|-+++
T Consensus 251 ~r~~~l~~ag~d~i~i-D~~~-g~~~~~~~~i~~ik~~~p~~~vi~g~v~t----~e~a~~a~~aGaD~i~vg~ 318 (505)
T PLN02274 251 ERLEHLVKAGVDVVVL-DSSQ-GDSIYQLEMIKYIKKTYPELDVIGGNVVT----MYQAQNLIQAGVDGLRVGM 318 (505)
T ss_pred HHHHHHHHcCCCEEEE-eCCC-CCcHHHHHHHHHHHHhCCCCcEEEecCCC----HHHHHHHHHcCcCEEEECC
Confidence 6788999999999887 7652 23334456799999999876654332222 3457888899999998754
No 417
>PRK05927 hypothetical protein; Provisional
Probab=80.95 E-value=15 Score=35.06 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=57.5
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCCCe------EEE-eecCCcCcHHHHHHH
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADR------LAV-HCHDTYGQALANILT 235 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~~~------l~~-H~Hn~~g~a~an~l~ 235 (327)
+..+++++.+.++.+.+.|+..+.+ +.|.- ..+.+.++++.+|+.+|++. +++ |.-...|+.....+.
T Consensus 74 y~ls~eei~~~a~~~~~~G~~~i~i--~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~ 151 (350)
T PRK05927 74 YLLSFDEFRSLMQRYVSAGVKTVLL--QGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALE 151 (350)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEE--eCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHH
Confidence 3678999999999999999999998 45543 34577788999998887541 111 334456898888888
Q ss_pred HH-HhcCceee
Q psy12516 236 AM-EFGISVFD 245 (327)
Q Consensus 236 a~-~~G~~~vd 245 (327)
.+ ++|++.+.
T Consensus 152 ~Lk~aGl~~l~ 162 (350)
T PRK05927 152 RLWDAGQRTIP 162 (350)
T ss_pred HHHHcCcccCC
Confidence 77 58886443
No 418
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=80.95 E-value=59 Score=31.94 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHHHHHhhhhhcccCcchhhh-hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCCh
Q psy12516 94 EDLVYMLEGKSMQCGVKEIAV-FASASEMFSKRNINCTIEESLERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVPP 170 (327)
Q Consensus 94 e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~~ 170 (327)
++++..+... ..++..+++ +.+.|+...+. .++. ...+.+.+.++.+++. |+.+...++ +|.|.+ +.
T Consensus 246 ~ell~~l~~~--~~~~~~l~iglQSgsd~vLk~-M~R~--~t~e~~~~~v~~lr~~~~~i~i~~d~I--vG~PgE---T~ 315 (446)
T PRK14337 246 PEVIEAFGEL--PNLCPRLHLPLQSGSDRILKA-MGRK--YDMARYLDIVTDLRAARPDIALTTDLI--VGFPGE---TE 315 (446)
T ss_pred HHHHHHHHhC--CcccCeEEECCCCCCHHHHHh-CCCC--CCHHHHHHHHHHHHHhCCCCeEEEeEE--EECCCC---CH
Confidence 5566655432 223444444 23445443332 2221 1134566677777776 565555444 566654 57
Q ss_pred HHHHHHHHHHHHcCcCEEEe
Q psy12516 171 HNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l 190 (327)
+.+.+..+.+.+.+.+.+.+
T Consensus 316 ed~~~tl~~l~~~~~~~~~~ 335 (446)
T PRK14337 316 EDFEQTLEAMRTVGFASSFS 335 (446)
T ss_pred HHHHHHHHHHHhcCCCeeEE
Confidence 78888888888888875544
No 419
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=80.93 E-value=22 Score=28.66 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=58.3
Q ss_pred HHHHHH--HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHH
Q psy12516 59 NILTAM--EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLE 136 (327)
Q Consensus 59 ~~~~a~--~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~ 136 (327)
|+++.+ .+|..++|.++ +.++|+++... .+.+.|.+.+..-... ...
T Consensus 17 niv~~~L~~~GfeVidLG~--------------~v~~e~~v~aa----~~~~adiVglS~L~t~-------------~~~ 65 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGV--------------LSPQEEFIDAA----IETDADAILVSSLYGH-------------GEI 65 (128)
T ss_pred HHHHHHHHHCCCEEEECCC--------------CCCHHHHHHHH----HHcCCCEEEEeccccC-------------CHH
Confidence 444444 58888888322 35778877643 4556666544311111 145
Q ss_pred HHHHHHHHHHHcCC-eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCC
Q psy12516 137 RFSEVVSTALTNGI-RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDT 193 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi-~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt 193 (327)
.++++++..++.|+ .+-+.+... + ..+++...+..+.+.++|++++.=+.|
T Consensus 66 ~~~~~~~~l~~~gl~~v~vivGG~---~---~i~~~d~~~~~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 66 DCKGLREKCDEAGLKDILLYVGGN---L---VVGKQDFEDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred HHHHHHHHHHHCCCCCCeEEEECC---C---CCChhhhHHHHHHHHHcCCCEEECcCC
Confidence 56777888888887 433322221 1 135566666677889999999886665
No 420
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=80.86 E-value=37 Score=29.53 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCe
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADR 217 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~ 217 (327)
+.++++.+++.|..+.+.+... .+.....-.+++..+.....+.|.+...+.- ...+.++.+++..+. +
T Consensus 95 l~~~i~~~~~~g~~~~v~~~~~--~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~--------~~~~~i~~l~~~~~~-~ 163 (215)
T PRK13813 95 LKAVVEAAAESGGKVFVVVEMS--HPGALEFIQPHADKLAKLAQEAGAFGVVAPA--------TRPERVRYIRSRLGD-E 163 (215)
T ss_pred HHHHHHHHHhcCCeEEEEEeCC--CCCCCCCHHHHHHHHHHHHHHhCCCeEEECC--------CcchhHHHHHHhcCC-C
Confidence 4556788888898876544321 1111111234566667777788877554221 112334556655543 1
Q ss_pred EEEeecCCcCcHHH--HHHHHHHhcCceeee
Q psy12516 218 LAVHCHDTYGQALA--NILTAMEFGISVFDS 246 (327)
Q Consensus 218 l~~H~Hn~~g~a~a--n~l~a~~~G~~~vd~ 246 (327)
+.+ =|.|.... |.-.++++|++.+-.
T Consensus 164 ~~i---vdgGI~~~g~~~~~~~~aGad~iV~ 191 (215)
T PRK13813 164 LKI---ISPGIGAQGGKAADAIKAGADYVIV 191 (215)
T ss_pred cEE---EeCCcCCCCCCHHHHHHcCCCEEEE
Confidence 111 22343333 477888999997643
No 421
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=80.86 E-value=46 Score=30.66 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHc-CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHH
Q psy12516 133 ESLERFSEVVSTALTN-GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 133 e~i~~~~~~v~~a~~~-Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~ 211 (327)
|-++++.++++..++. ++.+.+ |. +. .++++.+.+.|++.|+ |..|...| ++.+. ++
T Consensus 73 eE~~Rv~pvI~~l~~~~~~~ISI---------DT--~~----~~va~~AL~~GadiIN--DI~g~~d~-~~~~~---~a- 130 (282)
T PRK11613 73 EELDRVIPVVEAIAQRFEVWISV---------DT--SK----PEVIRESAKAGAHIIN--DIRSLSEP-GALEA---AA- 130 (282)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEE---------EC--CC----HHHHHHHHHcCCCEEE--ECCCCCCH-HHHHH---HH-
Confidence 3477788888777643 544321 11 22 3566777788999754 66676555 33333 33
Q ss_pred hcCCCeEEEeecCCcC-----------------cHHHHHHHHHHhcCc----eeeeccccCCC
Q psy12516 212 VIPADRLAVHCHDTYG-----------------QALANILTAMEFGIS----VFDSSIAGLGG 253 (327)
Q Consensus 212 ~~~~~~l~~H~Hn~~g-----------------~a~an~l~a~~~G~~----~vd~s~~G~G~ 253 (327)
++...-+-.|.+.+.. ......-.|..+|++ .+|-.+ |+|.
T Consensus 131 ~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGi-GF~k 192 (282)
T PRK11613 131 ETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGF-GFGK 192 (282)
T ss_pred HcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCC-CcCC
Confidence 3332235556532111 112344457889996 579853 5554
No 422
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=80.85 E-value=45 Score=31.12 Aligned_cols=123 Identities=17% Similarity=0.253 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc-CcCEEEecCCCCccCHHHHHHHHHHHHHh-cC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM-GCYEISLGDTIGVGTPGTMRLMLEDVLTV-IP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~-~~ 214 (327)
.+.+.++.+.+.|+.. +.++ -|-|. .. ..+.++++.+.+. |...+.+ .|.|.+.+. .+..+++. +.
T Consensus 53 ei~~~i~~~~~~gi~~-I~~t--GGEPl---l~-~~l~~li~~i~~~~~~~~i~i-tTNG~ll~~----~~~~L~~agl~ 120 (331)
T PRK00164 53 EIERLVRAFVALGVRK-VRLT--GGEPL---LR-KDLEDIIAALAALPGIRDLAL-TTNGYLLAR----RAAALKDAGLD 120 (331)
T ss_pred HHHHHHHHHHHCCCCE-EEEE--CCCCc---Cc-cCHHHHHHHHHhcCCCceEEE-EcCchhHHH----HHHHHHHcCCC
Confidence 3455566666667653 1222 13332 12 3456777777665 4455665 577876543 34445443 22
Q ss_pred CCeEEEeecCC-------cCcHHHHHHH----HHHhcCceeeeccccC-CCCCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 215 ADRLAVHCHDT-------YGQALANILT----AMEFGISVFDSSIAGL-GGCPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 215 ~~~l~~H~Hn~-------~g~a~an~l~----a~~~G~~~vd~s~~G~-G~~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
.+.|++|.-++ .+......+. +.++|...+......+ |. -.-.+++++..+++.|++
T Consensus 121 ~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~--------n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 121 RVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGV--------NDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred EEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCC--------CHHHHHHHHHHHHhCCCe
Confidence 34566665332 1223334444 4455653232222112 21 113667777777777764
No 423
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=80.84 E-value=15 Score=33.81 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=48.2
Q ss_pred HHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 175 ~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
+-++.+.++|+|.|.+ .-++|+++.+.++.+++..+.+.+++- -|.-..|..+=...|+|.|-++-
T Consensus 200 eqa~ea~~agaDiI~L----Dn~~~e~l~~av~~~~~~~~~~~leaS----GGI~~~ni~~yA~tGvD~Is~ga 265 (284)
T PRK06096 200 KEAIAALRAQPDVLQL----DKFSPQQATEIAQIAPSLAPHCTLSLA----GGINLNTLKNYADCGIRLFITSA 265 (284)
T ss_pred HHHHHHHHcCCCEEEE----CCCCHHHHHHHHHHhhccCCCeEEEEE----CCCCHHHHHHHHhcCCCEEEECc
Confidence 3344566899999987 368999999999988755555555553 36667788888889999985543
No 424
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=80.84 E-value=18 Score=28.58 Aligned_cols=104 Identities=13% Similarity=-0.004 Sum_probs=61.9
Q ss_pred HHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH-cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEE
Q psy12516 141 VVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK-MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLA 219 (327)
Q Consensus 141 ~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~ 219 (327)
+..+.++.|..+.. .+.....+..+.+.+ ..+|.|.+.=+.... ..+.++++.+|+..|++++.
T Consensus 8 ~aa~l~~~g~~v~~-------------~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~--~~~~~~~~~ik~~~p~~~iv 72 (127)
T cd02068 8 LAAVLEDAGFIVAE-------------HDVLSADDIVEDIKELLKPDVVGISLMTSAI--YEALELAKIAKEVLPNVIVV 72 (127)
T ss_pred HHHHHHHCCCeeee-------------cCCCCHHHHHHHHHHhcCCCEEEEeeccccH--HHHHHHHHHHHHHCCCCEEE
Confidence 34567778876652 111122444555655 678999887554433 36888999999999887776
Q ss_pred EeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 220 VHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 220 ~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
+=.+. ++.+...... ...+|.-+.|-|| .++.+++..+.+
T Consensus 73 ~GG~~----~t~~p~~~~~--~~~~D~vv~GEgE----------~~~~~l~~~l~~ 112 (127)
T cd02068 73 VGGPH----ATFFPEEILE--EPGVDFVVIGEGE----------ETFLKLLEELEE 112 (127)
T ss_pred ECCcc----hhhCHHHHhc--CCCCCEEEECCcH----------HHHHHHHHHHHc
Confidence 62221 1112222111 2457777776666 677777777653
No 425
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=80.81 E-value=7.4 Score=35.71 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=9.3
Q ss_pred HHHhcCceeeeccccCCC
Q psy12516 236 AMEFGISVFDSSIAGLGG 253 (327)
Q Consensus 236 a~~~G~~~vd~s~~G~G~ 253 (327)
+.++|.+..-.-+.|+|+
T Consensus 167 l~~~Gi~v~~~~i~Gl~e 184 (296)
T TIGR00433 167 AKKAGLKVCSGGIFGLGE 184 (296)
T ss_pred HHHcCCEEEEeEEEeCCC
Confidence 345566543334566655
No 426
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=80.72 E-value=37 Score=30.60 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=82.5
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+++.|++.+.+...... .+..+.++.+..+.+.+++.|..+.+.+ ...|- ..+..+.+.+.+.++...+
T Consensus 98 ~al~~Ga~~v~~~~~~g~--------~~~~~~~~~~~~i~~~~~~~g~~liv~~-~~~Gv-h~~~~~~~~~~~~~~~a~~ 167 (258)
T TIGR01949 98 DAIRMGADAVSIHVNVGS--------DTEWEQIRDLGMIAEICDDWGVPLLAMM-YPRGP-HIDDRDPELVAHAARLGAE 167 (258)
T ss_pred HHHHCCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCCEEEEE-eccCc-ccccccHHHHHHHHHHHHH
Confidence 345677776654332111 1123346778888888999998865422 22221 1122455666666788889
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEee-cC--CcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHC-HD--TYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 259 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~-Hn--~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g 259 (327)
.|+|.|... .. ..++. ++.+.+..+ +|+..=. -+ +...+..|.-.++++|++.+-.+-.=+
T Consensus 168 ~GADyikt~-~~--~~~~~----l~~~~~~~~-iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~-------- 231 (258)
T TIGR01949 168 LGADIVKTP-YT--GDIDS----FRDVVKGCP-APVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIF-------- 231 (258)
T ss_pred HCCCEEecc-CC--CCHHH----HHHHHHhCC-CcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhh--------
Confidence 999999865 21 22333 444444333 3444322 22 466678899999999999665433212
Q ss_pred CCCCccHHHHHHHHHh
Q psy12516 260 ASGNVATEDLVYMLEG 275 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~ 275 (327)
...+..+.+..|++
T Consensus 232 --~~~dp~~~~~~l~~ 245 (258)
T TIGR01949 232 --QHDDPVGITKAVCK 245 (258)
T ss_pred --cCCCHHHHHHHHHH
Confidence 23445566655554
No 427
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=80.67 E-value=53 Score=31.16 Aligned_cols=58 Identities=19% Similarity=0.100 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHc-CCeEEEEEeeeccCCC--CCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 131 IEESLERFSEVVSTALTN-GIRVRGYISCVVGCPY--EGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~-Gi~v~~~l~~~~g~~~--~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.+...+...++++..++. |..+.+.+.. +..+ .+..+.++..++++.+.++|+|.|.+
T Consensus 183 lenR~r~~~eiv~aIR~~vG~d~~v~iRi--~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 183 FENRMRFPVEIVRAVRAAVGEDFIIIYRL--SMLDLVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCceEEEEe--cccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 333345555566655553 4443322222 1111 12368888999999999999999887
No 428
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=80.66 E-value=47 Score=31.53 Aligned_cols=108 Identities=11% Similarity=-0.004 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEE-EeeeccCCCCC-----CCChHHHHHHHHHHHH--cCcCEEEecCCCC---------
Q psy12516 133 ESLERFSEVVSTALTNGIRVRGY-ISCVVGCPYEG-----AVPPHNVTRVATALYK--MGCYEISLGDTIG--------- 195 (327)
Q Consensus 133 e~i~~~~~~v~~a~~~Gi~v~~~-l~~~~g~~~~~-----r~~~e~l~~~~~~~~~--~g~~~i~l~Dt~G--------- 195 (327)
+.++.+.++.+.|++.|+.+..- +.+..+..... ..+|+.+...++.+.+ +|+|.+-+.=+..
T Consensus 140 ~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~ 219 (340)
T PRK12858 140 RKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDG 219 (340)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCccccccccc
Confidence 34677889999999999987543 24433222111 2578899999999995 9999877744421
Q ss_pred ---ccCHHHHHHHHHHHHHhcCCCeEEE-eecCCcCcHHHHHHHHHHhcC
Q psy12516 196 ---VGTPGTMRLMLEDVLTVIPADRLAV-HCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 196 ---~~~P~~~~~~~~~~~~~~~~~~l~~-H~Hn~~g~a~an~l~a~~~G~ 241 (327)
..+-.+..+.++.+.+..+- |+.+ =.--+...-......|+++|+
T Consensus 220 ~~~~~~~~~~~~~f~~~~~a~~~-P~vvlsgG~~~~~f~~~l~~A~~aGa 268 (340)
T PRK12858 220 FEEAYTQEEAFKLFREQSDATDL-PFIFLSAGVSPELFRRTLEFACEAGA 268 (340)
T ss_pred ccccccHHHHHHHHHHHHhhCCC-CEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 11445556777777776553 4443 222233445666677889998
No 429
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=80.57 E-value=18 Score=33.90 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=47.9
Q ss_pred cccCcchhhhhhhh-hHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 105 MQCGVKEIAVFASA-SEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 105 ~~~Gid~i~l~~~~-sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
.+.|+|++.+.... .+-..+.-.|. ....++.+.++++++.+.|+.|-..---.+ -+++++..++.+-+.+.
T Consensus 211 eeAGLdRiNlSv~aLDpk~Ak~L~G~-~dYdv~kvle~aE~i~~a~idvlIaPv~lP------G~ND~E~~~iIe~A~~i 283 (414)
T COG2100 211 EEAGLDRINLSVDALDPKLAKMLAGR-KDYDVKKVLEVAEYIANAGIDVLIAPVWLP------GVNDDEMPKIIEWAREI 283 (414)
T ss_pred HHhCCceEEeecccCCHHHHHHhcCc-cccCHHHHHHHHHHHHhCCCCEEEeeeecC------CcChHHHHHHHHHHHHh
Confidence 45678888775433 33333333332 223477888899999999998764322222 36778888888888887
Q ss_pred CcC
Q psy12516 184 GCY 186 (327)
Q Consensus 184 g~~ 186 (327)
|+-
T Consensus 284 GaG 286 (414)
T COG2100 284 GAG 286 (414)
T ss_pred CCC
Confidence 753
No 430
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=80.54 E-value=37 Score=32.21 Aligned_cols=138 Identities=12% Similarity=0.002 Sum_probs=72.4
Q ss_pred hhcccCcchhhhhhh--------hhHHH--HHHhhcCChHHHHHHHHHHHHHHHHc-C----CeEEEEEeeeccCCC-CC
Q psy12516 103 KSMQCGVKEIAVFAS--------ASEMF--SKRNINCTIEESLERFSEVVSTALTN-G----IRVRGYISCVVGCPY-EG 166 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~--------~sd~~--~~~~l~~s~ee~i~~~~~~v~~a~~~-G----i~v~~~l~~~~g~~~-~~ 166 (327)
.+.++|.|.+.+-.. +|+.. +.-+++-+.+...+-+.++++..++. | ..+.+.+.... .++ .+
T Consensus 152 ~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~-~~~~~~ 230 (353)
T cd04735 152 RAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSP-EEPEEP 230 (353)
T ss_pred HHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECc-ccccCC
Confidence 456688888765432 23322 22234556676677777777766653 4 22222222111 111 22
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCC----ccCHHHHHHHHHHHHHhc-CCCeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIG----VGTPGTMRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G----~~~P~~~~~~~~~~~~~~-~~~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
-.+.++..++++.+.+.|+|.|.+.-..- ...+..-......+++.+ +.+||....--+ ....+..+++.|+
T Consensus 231 g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~---t~e~ae~~l~~ga 307 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSIN---TPDDALEALETGA 307 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCC---CHHHHHHHHHcCC
Confidence 35678899999999999999988843110 011111233455566555 245555533211 2344556666665
Q ss_pred cee
Q psy12516 242 SVF 244 (327)
Q Consensus 242 ~~v 244 (327)
|.|
T Consensus 308 D~V 310 (353)
T cd04735 308 DLV 310 (353)
T ss_pred ChH
Confidence 543
No 431
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=80.53 E-value=49 Score=30.71 Aligned_cols=209 Identities=12% Similarity=0.135 Sum_probs=109.5
Q ss_pred HHHHHcCcCEEEe------------cCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHH--HHHHH-HcCCc
Q psy12516 5 SALYKMGCYEISL------------GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALAN--ILTAM-EFGIS 69 (327)
Q Consensus 5 ~~~~~~g~~~i~~------------~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~--~~~a~-~aG~~ 69 (327)
+.+.++|.+.+.+ +|. |.++..++...++.+.+..+ +|+..-.=+-+|..... .+..+ ++|+.
T Consensus 30 rl~e~aGf~ai~~sg~~~~as~lG~pD~-g~l~~~e~~~~~~~I~~~~~-lPv~aD~dtGyG~~~~v~r~V~~~~~aGaa 107 (294)
T TIGR02319 30 KVIQQAGFPAVHMTGSGTSASMLGLPDL-GFTSVSEQAINAKNIVLAVD-VPVIMDADAGYGNAMSVWRATREFERVGIV 107 (294)
T ss_pred HHHHHcCCCEEEecHHHHHHHHcCCCCc-CCCCHHHHHHHHHHHHhccC-CCEEEECCCCCCCcHHHHHHHHHHHHcCCe
Confidence 4455666665554 343 57777777777777777764 77777777777664442 13333 57776
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG 149 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G 149 (327)
-|..-=.-.-. +.|......+ .+.++..++++.+.+...+..
T Consensus 108 gi~IEDq~~pK------~cg~~~~k~l--------------------------------v~~ee~~~kI~Aa~~A~~~~d 149 (294)
T TIGR02319 108 GYHLEDQVNPK------RCGHLEGKRL--------------------------------ISTEEMTGKIEAAVEAREDED 149 (294)
T ss_pred EEEEECCCCcc------ccCCCCCccc--------------------------------cCHHHHHHHHHHHHHhccCCC
Confidence 54422110000 1111110000 112233444444433332222
Q ss_pred CeEEEEEeeeccCCCC-CCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeE--EEeecCCc
Q psy12516 150 IRVRGYISCVVGCPYE-GAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRL--AVHCHDTY 226 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~-~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l--~~H~Hn~~ 226 (327)
+-+ +-. .|. .....++.++-++...++|+|.|.+. |.-+++++.++.+.+ +. |+ -+......
T Consensus 150 ~~I--~AR-----TDa~~~~g~deaI~Ra~aY~eAGAD~ifi~---~~~~~~ei~~~~~~~----~~-P~~~nv~~~~~~ 214 (294)
T TIGR02319 150 FTI--IAR-----TDARESFGLDEAIRRSREYVAAGADCIFLE---AMLDVEEMKRVRDEI----DA-PLLANMVEGGKT 214 (294)
T ss_pred eEE--EEE-----ecccccCCHHHHHHHHHHHHHhCCCEEEec---CCCCHHHHHHHHHhc----CC-CeeEEEEecCCC
Confidence 222 111 111 12345677777888889999999884 577888877666654 32 33 23222221
Q ss_pred CcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q psy12516 227 GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 227 g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
. .-+.-..-+.|+++|-.....+ ++-...+.+.+..|++.|-
T Consensus 215 p--~~s~~eL~~lG~~~v~~~~~~~--------~aa~~a~~~~~~~l~~~G~ 256 (294)
T TIGR02319 215 P--WLTTKELESIGYNLAIYPLSGW--------MAAASVLRKLFTELREAGT 256 (294)
T ss_pred C--CCCHHHHHHcCCcEEEEcHHHH--------HHHHHHHHHHHHHHHHcCC
Confidence 1 1134455577999886655433 3456677777777776554
No 432
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=80.36 E-value=34 Score=31.72 Aligned_cols=78 Identities=13% Similarity=0.212 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCC-----C------ccCHHHHHHHHHHHHHhcCCCeEEEeecC------CcCcHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTI-----G------VGTPGTMRLMLEDVLTVIPADRLAVHCHD------TYGQAL 230 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~-----G------~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn------~~g~a~ 230 (327)
-++..+.+.++++.++|+-.|.|-|.+ | +..+++....++..++...+.++.+=.-- .+--|+
T Consensus 90 G~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI 169 (292)
T PRK11320 90 GGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAI 169 (292)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHH
Confidence 488899999999999999999999987 2 34667777777777765433344433221 223456
Q ss_pred HHHHHHHHhcCceee
Q psy12516 231 ANILTAMEFGISVFD 245 (327)
Q Consensus 231 an~l~a~~~G~~~vd 245 (327)
.-+.+-.++|||.|=
T Consensus 170 ~Ra~aY~eAGAD~if 184 (292)
T PRK11320 170 ERAQAYVEAGADMIF 184 (292)
T ss_pred HHHHHHHHcCCCEEE
Confidence 777778899998753
No 433
>PTZ00413 lipoate synthase; Provisional
Probab=80.22 E-value=58 Score=31.41 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHc---CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTN---GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~---Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.++..++++.+++. |+.+...++.-.| =+.+++.++++.+.+.|+|.+.|
T Consensus 277 Ye~sLe~Lr~AKe~f~~gi~tcSGiIVGLG------ET~eEvie~m~dLrelGVDivtI 329 (398)
T PTZ00413 277 YRQSLKVLEHVKEFTNGAMLTKSSIMLGLG------ETEEEVRQTLRDLRTAGVSAVTL 329 (398)
T ss_pred HHHHHHHHHHHHHHhcCCceEeeeeEecCC------CCHHHHHHHHHHHHHcCCcEEee
Confidence 44556667777765 7776544443233 25678999999999999999866
No 434
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=80.22 E-value=48 Score=30.45 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=104.0
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccC
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~g 77 (327)
+.++.+.+.|++.|.+.=|+| .+|.++-.++++.+.+..++ +++-.|.-.+..-++..+..|-++|++.+=+.-..
T Consensus 25 ~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~ 104 (289)
T cd00951 25 AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPY 104 (289)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 356788899999999999885 55677777777766666543 55555443344444555555666777666432211
Q ss_pred CCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy12516 78 LGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYIS 157 (327)
Q Consensus 78 lg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~ 157 (327)
.- ..+.+.++ +-++.+.+ ..++.+..|-
T Consensus 105 y~----------~~~~~~i~--------------------------------------~~f~~v~~---~~~~pi~lYn- 132 (289)
T cd00951 105 LT----------EAPQEGLY--------------------------------------AHVEAVCK---STDLGVIVYN- 132 (289)
T ss_pred CC----------CCCHHHHH--------------------------------------HHHHHHHh---cCCCCEEEEe-
Confidence 10 11223222 22222222 2356665442
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
.+ ....+++.+.+++ +.-...+.++|+.| ...++.+++ +..++ .+.+-.-.+ ..-...+.++
T Consensus 133 ----~~-g~~l~~~~l~~L~----~~~pnivgiKds~~--d~~~~~~~~----~~~~~-~~~v~~G~~--~~d~~~~~~l 194 (289)
T cd00951 133 ----RA-NAVLTADSLARLA----ERCPNLVGFKDGVG--DIELMRRIV----AKLGD-RLLYLGGLP--TAEVFALAYL 194 (289)
T ss_pred ----CC-CCCCCHHHHHHHH----hcCCCEEEEEeCCC--CHHHHHHHH----HhcCC-CeEEEeCCC--cchHhHHHHH
Confidence 11 1246776666554 32357889999987 345544443 33343 344322210 0122346778
Q ss_pred HhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 238 EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 238 ~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
.+|++.. +. ..+|.-.|.++...+.
T Consensus 195 ~~Ga~G~---is----------~~~n~~P~~~~~l~~~ 219 (289)
T cd00951 195 AMGVPTY---SS----------AVFNFVPEIALAFYAA 219 (289)
T ss_pred HCCCCEE---Ee----------chhhhhHHHHHHHHHH
Confidence 8887643 22 3567777787777665
No 435
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=80.10 E-value=13 Score=29.10 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=41.9
Q ss_pred HHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEe
Q psy12516 142 VSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVH 221 (327)
Q Consensus 142 v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H 221 (327)
++..++.|++..+++. |+.-.-..-...+..+.+.++|..-+.++=+.+..+++++..+...+.+ .|. |+-+|
T Consensus 20 ~~~la~~GfktVInlR-----pd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~-Pvl~h 92 (110)
T PF04273_consen 20 LAQLAAQGFKTVINLR-----PDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPK-PVLAH 92 (110)
T ss_dssp HHHHHHCT--EEEE-S------TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTT-SEEEE
T ss_pred HHHHHHCCCcEEEECC-----CCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCC-CEEEE
Confidence 4566778998765544 2211111113344567788999999999999999999999887666554 565 78777
Q ss_pred ecCC
Q psy12516 222 CHDT 225 (327)
Q Consensus 222 ~Hn~ 225 (327)
|...
T Consensus 93 C~sG 96 (110)
T PF04273_consen 93 CRSG 96 (110)
T ss_dssp -SCS
T ss_pred CCCC
Confidence 7653
No 436
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=80.08 E-value=11 Score=35.39 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCcCEEEecCCCCc---cCHHHHHHHH----HHHHHhcCCCeEEEeecCCcCcHHHHHHHHH-HhcCcee
Q psy12516 173 VTRVATALYKMGCYEISLGDTIGV---GTPGTMRLML----EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 244 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~~~~~~----~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~-~~G~~~v 244 (327)
+.++++...++|+|.|.+.|+.+. ++|+...+++ +++.+.+...++.+|.+.+. .+.+..+ +.|++.+
T Consensus 173 ~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~cG~~----~~~l~~~~~~g~d~~ 248 (326)
T cd03307 173 CIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHICGNT----TPILEYIAQCGFDGI 248 (326)
T ss_pred HHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCC----hhHHHHHHHcCCCee
Confidence 445556566789999999998763 3888888765 33333343246778876553 2234443 4577653
No 437
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.03 E-value=7.8 Score=35.84 Aligned_cols=69 Identities=12% Similarity=-0.005 Sum_probs=52.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
+-+.++.++|+|.|-+= .++|+++++.++.++...|.+.++.- -|....|+.+..+.|++.|.++.-..
T Consensus 210 ~ea~eal~~gaDiI~LD----nm~~e~vk~av~~~~~~~~~v~ieaS----GGI~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 210 EQLDEVLAEGAELVLLD----NFPVWQTQEAVQRRDARAPTVLLESS----GGLTLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred HHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHhccCCCEEEEEE----CCCCHHHHHHHHhcCCCEEEeChhhc
Confidence 45777889999988776 46799999999988776665554443 35667788888899999999775433
No 438
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=79.98 E-value=26 Score=28.85 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=65.0
Q ss_pred CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHH
Q psy12516 43 DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMF 122 (327)
Q Consensus 43 ~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~ 122 (327)
.++|+-.||..-.-+++.++ .+|.+.+..++ +.++|+++.. +++...+.+.+. +.+..|
T Consensus 18 ak~GlDgHd~gakvia~~l~--d~GfeVi~~g~--------------~~tp~e~v~a----A~~~dv~vIgvS-sl~g~h 76 (143)
T COG2185 18 AKLGLDGHDRGAKVIARALA--DAGFEVINLGL--------------FQTPEEAVRA----AVEEDVDVIGVS-SLDGGH 76 (143)
T ss_pred eccCccccccchHHHHHHHH--hCCceEEecCC--------------cCCHHHHHHH----HHhcCCCEEEEE-eccchH
Confidence 46788999987543333322 47777776322 3456776653 356666666543 222222
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCC
Q psy12516 123 SKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDT 193 (327)
Q Consensus 123 ~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt 193 (327)
...+..+++.+++.|..-...+. .+..+++. .+.+.++|+++|.-+.|
T Consensus 77 ------------~~l~~~lve~lre~G~~~i~v~~-------GGvip~~d----~~~l~~~G~~~if~pgt 124 (143)
T COG2185 77 ------------LTLVPGLVEALREAGVEDILVVV-------GGVIPPGD----YQELKEMGVDRIFGPGT 124 (143)
T ss_pred ------------HHHHHHHHHHHHHhCCcceEEee-------cCccCchh----HHHHHHhCcceeeCCCC
Confidence 45577888999999986432111 23456655 55677899999997765
No 439
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=79.79 E-value=23 Score=35.74 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=59.7
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCCccC---HHHHHHHHHHHHHhcCC-CeEEEeecCCcCcH-HHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIGVGT---PGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQA-LANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~---P~~~~~~~~~~~~~~~~-~~l~~H~Hn~~g~a-~an~l~a~~~G 240 (327)
+-..++.-.+.++.+.+.|.+.+.|.-.+..+. +.++.+++..++..+|. .|+.+. |.+ ..+...++..|
T Consensus 62 GG~~~DLR~~Sa~~l~~~~f~gyaIGG~v~~~e~y~~~~l~~iv~~~~~~LP~dkPryL~-----GvG~P~~i~~~V~lG 136 (540)
T TIGR00432 62 GSTHPDLRRFAAGEAAKLGGDIYPIGAVVPLMEAYRYRDLARVILESRSALPPVEPIHLF-----GCGHPMLFALAVALG 136 (540)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCcChHhhhccHHHHHHHHHHHHhhCCCCcceeec-----CCCCHHHHHHHHHhC
Confidence 346677778888999999999998887664433 55677888888888853 566553 555 57888899999
Q ss_pred Cceeeeccc
Q psy12516 241 ISVFDSSIA 249 (327)
Q Consensus 241 ~~~vd~s~~ 249 (327)
+|.+|++..
T Consensus 137 vDlFD~v~p 145 (540)
T TIGR00432 137 CDLFDSAAY 145 (540)
T ss_pred CCcccccHH
Confidence 999998743
No 440
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=79.73 E-value=11 Score=35.32 Aligned_cols=90 Identities=20% Similarity=0.287 Sum_probs=55.5
Q ss_pred HHHHHHhhhhhcccCcc-hhhh-hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCC-CCh
Q psy12516 94 EDLVYMLEGKSMQCGVK-EIAV-FASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA-VPP 170 (327)
Q Consensus 94 e~v~~~l~~~~~~~Gid-~i~l-~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r-~~~ 170 (327)
++.+..+++ .|++ .+.+ +.+.++...+..+|+.. ..+.+.++++.+++.|+.+.++++ +|.|..+. -+.
T Consensus 117 ~e~L~~l~~----aG~~~~v~iG~ES~~d~~L~~~inKg~--t~~~~~~ai~~~~~~Gi~v~~~~i--~G~P~~se~ea~ 188 (313)
T TIGR01210 117 EEKLEELRK----IGVNVEVAVGLETANDRIREKSINKGS--TFEDFIRAAELARKYGAGVKAYLL--FKPPFLSEKEAI 188 (313)
T ss_pred HHHHHHHHH----cCCCEEEEEecCcCCHHHHHHhhCCCC--CHHHHHHHHHHHHHcCCcEEEEEE--ecCCCCChhhhH
Confidence 445555554 3555 3444 44556665543444432 145677889999999999887766 45565432 345
Q ss_pred HHHHHHHHHHHHcCcCEEEecC
Q psy12516 171 HNVTRVATALYKMGCYEISLGD 192 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~D 192 (327)
+.+.+.++.+.+.+ +.+.+--
T Consensus 189 ed~~~ti~~~~~l~-~~vs~~~ 209 (313)
T TIGR01210 189 ADMISSIRKCIPVT-DTVSINP 209 (313)
T ss_pred HHHHHHHHHHHhcC-CcEEEEC
Confidence 66777788888887 7666533
No 441
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=79.68 E-value=56 Score=32.08 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEE
Q psy12516 135 LERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 135 i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~ 189 (327)
.+...+.++.+++. |+.+..+ .++|.|.+ +.+.+.+..+.+.+.+.+.+.
T Consensus 280 ~~~~~~~i~~lr~~~~~i~i~t~--~IvGfPgE---T~edf~~tl~fi~e~~~d~~~ 331 (440)
T PRK14862 280 VEKTLERIKKWREICPDLTIRST--FIVGFPGE---TEEDFQMLLDFLKEAQLDRVG 331 (440)
T ss_pred HHHHHHHHHHHHHHCCCceeccc--EEEECCCC---CHHHHHHHHHHHHHcCCCeee
Confidence 34455666666664 5555443 34566654 567777777777887777543
No 442
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=79.60 E-value=63 Score=31.53 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE
Q psy12516 135 LERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI 188 (327)
Q Consensus 135 i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i 188 (327)
.+.+.+.++.+++. ++.+...+ ++|.|.+ +.+.+.+..+.+.+.+++.+
T Consensus 269 ~~~~~~~i~~l~~~~~~i~i~~~~--I~G~PgE---T~e~~~~t~~fl~~~~~~~~ 319 (430)
T TIGR01125 269 GEQQLDFIERLREKCPDAVLRTTF--IVGFPGE---TEEDFQELLDFVEEGQFDRL 319 (430)
T ss_pred HHHHHHHHHHHHHhCCCCeEeEEE--EEECCCC---CHHHHHHHHHHHHhcCCCEE
Confidence 34566777777777 44454443 4565654 67778888888888887744
No 443
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=79.53 E-value=8.5 Score=30.57 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=44.6
Q ss_pred EecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcch
Q psy12516 48 HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKE 111 (327)
Q Consensus 48 H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~ 111 (327)
...+.-.....-++.|++.|+|-|=++=.-+|+|-| ..||-..+.=+.++++..-+.|++.
T Consensus 34 rv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~geCHy---~~GN~ka~rR~~~lke~l~elgie~ 94 (132)
T COG1908 34 RVMCSGRVNPEFVLKALRKGADGVLVAGCKIGECHY---ISGNYKAKRRMELLKELLKELGIEP 94 (132)
T ss_pred EeeccCccCHHHHHHHHHcCCCeEEEecccccceee---eccchHHHHHHHHHHHHHHHhCCCc
Confidence 344444445667899999999999888889999999 6678766666666666666666653
No 444
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=79.51 E-value=38 Score=31.83 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCC--C----------CccCHHH
Q psy12516 134 SLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDT--I----------GVGTPGT 201 (327)
Q Consensus 134 ~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt--~----------G~~~P~~ 201 (327)
.++++.+.++.+++.|..+...+...-| .+.++..++++.+.+.+++.|.+.-- . -..++++
T Consensus 206 ~~~~vl~~L~~l~~~~~~~~ir~tlv~g------~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~ee 279 (322)
T PRK13762 206 AWERILETLELLPSKKTRTVIRITLVKG------YNMHDPEGFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEE 279 (322)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEEECC------cCccHHHHHHHHHHHcCCCEEEEECCeECCCccccccccCCcCHHH
Confidence 4677888888888888876544333211 33334447777777889988765111 1 1366789
Q ss_pred HHHHHHHHHHhcC
Q psy12516 202 MRLMLEDVLTVIP 214 (327)
Q Consensus 202 ~~~~~~~~~~~~~ 214 (327)
+.++.+.+++...
T Consensus 280 v~~~~~~l~~~~~ 292 (322)
T PRK13762 280 VREFAKELAEYTG 292 (322)
T ss_pred HHHHHHHHHHhcC
Confidence 9999888887653
No 445
>PLN02389 biotin synthase
Probab=79.45 E-value=19 Score=34.70 Aligned_cols=81 Identities=25% Similarity=0.277 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEE--------EeecCCcCcHHHHHHHHHHhc
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLA--------VHCHDTYGQALANILTAMEFG 240 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~--------~H~Hn~~g~a~an~l~a~~~G 240 (327)
..+++.++++.+.+.+.. ++=+.|.++++.+..+-..=...++. .++ ++...++---+.+...|-++|
T Consensus 151 ~~e~i~eiir~ik~~~l~---i~~s~G~l~~E~l~~LkeAGld~~~~-~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~G 226 (379)
T PLN02389 151 NFNQILEYVKEIRGMGME---VCCTLGMLEKEQAAQLKEAGLTAYNH-NLDTSREYYPNVITTRSYDDRLETLEAVREAG 226 (379)
T ss_pred HHHHHHHHHHHHhcCCcE---EEECCCCCCHHHHHHHHHcCCCEEEe-eecCChHHhCCcCCCCCHHHHHHHHHHHHHcC
Confidence 346777777777655532 34477777776655543320111110 111 111223334456666677888
Q ss_pred CceeeeccccCCC
Q psy12516 241 ISVFDSSIAGLGG 253 (327)
Q Consensus 241 ~~~vd~s~~G~G~ 253 (327)
.+..-+-+.|+||
T Consensus 227 i~v~sg~IiGlgE 239 (379)
T PLN02389 227 ISVCSGGIIGLGE 239 (379)
T ss_pred CeEeEEEEECCCC
Confidence 8777777888887
No 446
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.39 E-value=9.2 Score=35.36 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=53.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
+-+.++.++|+|.|.+- .++|.++++.++.+++..|.+++..= -|....|+-+..+.|++.|-++-.-.
T Consensus 207 eea~eA~~~GaD~I~LD----n~~~e~l~~av~~~~~~~~~i~leAs----GGIt~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 207 EQVQEALEYGADIIMLD----NMPVDLMQQAVQLIRQQNPRVKIEAS----GNITLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred HHHHHHHHcCCCEEEEC----CCCHHHHHHHHHHHHhcCCCeEEEEE----CCCCHHHHHHHHHcCCCEEEEchhhh
Confidence 56778889999999875 88999999999988766665555442 35567788888899999999775433
No 447
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.36 E-value=48 Score=29.89 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=18.5
Q ss_pred CCCccHHHHHHHHHhCCCCCCC
Q psy12516 261 SGNVATEDLVYMLEGMGIETGA 282 (327)
Q Consensus 261 ~Gn~~~e~~~~~l~~~g~~~~~ 282 (327)
.|+.+..+++..|+..||+..+
T Consensus 230 ~G~id~~~~~~~L~~~gy~G~~ 251 (284)
T PRK13210 230 EGCVDFVGIFKTLKELNYRGPF 251 (284)
T ss_pred CcccCHHHHHHHHHHcCCCceE
Confidence 6899999999999998877433
No 448
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=78.98 E-value=55 Score=31.63 Aligned_cols=84 Identities=6% Similarity=0.016 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHHcCcCEEEe--c--CC-----CC---ccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISL--G--DT-----IG---VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 235 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l--~--Dt-----~G---~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~ 235 (327)
.+++.+.++++++.+.|+|.|.| . .+ .| .-.|+.+++++..+++... +||.+-.--+..-=..-+.+
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~-iPv~vKLsPn~t~i~~ia~a 202 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKAT-VPVWAKMTPNITDITQPARV 202 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhc-CceEEEeCCChhhHHHHHHH
Confidence 57899999999999999996554 2 12 12 1468999999999987653 57777666554433344555
Q ss_pred HHHhcCcee---eeccccCC
Q psy12516 236 AMEFGISVF---DSSIAGLG 252 (327)
Q Consensus 236 a~~~G~~~v---d~s~~G~G 252 (327)
+.++|++.| ++...+++
T Consensus 203 a~~~Gadgi~liNT~~~~~~ 222 (385)
T PLN02495 203 ALKSGCEGVAAINTIMSVMG 222 (385)
T ss_pred HHHhCCCEEEEecccCcccc
Confidence 778888864 44443443
No 449
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=78.92 E-value=9.4 Score=35.23 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=51.9
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
++.++++.++|+|.|-+ ..++|+++++.++.+++..|...++. .-|....|+.+..+.|+++|-++.-
T Consensus 199 leqa~ea~~agaDiI~L----Dn~~~e~l~~av~~~~~~~~~~~lea----SGGI~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 199 PKEAIAALRAQPDVLQL----DKFSPQQATEIAQIAPSLAPHCTLSL----AGGINLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred HHHHHHHHHcCCCEEEE----CCCCHHHHHHHHHHhhccCCCeEEEE----ECCCCHHHHHHHHhcCCCEEEECcc
Confidence 36688899999999988 47899999999998765555444443 3466678888888999999965543
No 450
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=78.85 E-value=55 Score=30.26 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHcCcCEEEe---c-CC---C--C---ccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISL---G-DT---I--G---VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 235 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l---~-Dt---~--G---~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~ 235 (327)
.+++++.+.++.+.+.|+|.|.| | .+ - | .-.|+.+.++++.+++... +||.+-..-+..--..-+..
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~Pv~vKl~~~~~~~~~~a~~ 188 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVK-IPVIAKLTPNITDIREIARA 188 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcC-CCeEEECCCCchhHHHHHHH
Confidence 47899999999999889997666 2 22 1 2 1469999999999998764 57777665444323344455
Q ss_pred HHHhcCceee
Q psy12516 236 AMEFGISVFD 245 (327)
Q Consensus 236 a~~~G~~~vd 245 (327)
+.++|++.|-
T Consensus 189 ~~~~Gadgi~ 198 (299)
T cd02940 189 AKEGGADGVS 198 (299)
T ss_pred HHHcCCCEEE
Confidence 6788999764
No 451
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=78.73 E-value=8.2 Score=36.31 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCcCEEEecC-CCCccCHHHHHHHHH--------HHHHhcCCCeEEEeecCCcCcHHHHHHHHH-HhcCc
Q psy12516 173 VTRVATALYKMGCYEISLGD-TIGVGTPGTMRLMLE--------DVLTVIPADRLAVHCHDTYGQALANILTAM-EFGIS 242 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~D-t~G~~~P~~~~~~~~--------~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~-~~G~~ 242 (327)
+.++++...+.|++.+.+.| +.+.++|++..+++. .+++..+..++ +|.|.+.. +.+..+ +.|++
T Consensus 182 ~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~i-lh~cg~~~----~~~~~~~~~~~~ 256 (338)
T TIGR01464 182 TIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPV-ILFAKGAG----HLLEELAETGAD 256 (338)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEeCCcH----HHHHHHHhcCCC
Confidence 44555656678999999999 566889987776552 33332234444 55544332 334444 34766
Q ss_pred ee
Q psy12516 243 VF 244 (327)
Q Consensus 243 ~v 244 (327)
.+
T Consensus 257 ~~ 258 (338)
T TIGR01464 257 VV 258 (338)
T ss_pred EE
Confidence 54
No 452
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=78.72 E-value=9.3 Score=34.11 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=46.8
Q ss_pred HHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecc
Q psy12516 3 VASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSI 75 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~ 75 (327)
-++.+.+.+.+.+.|.-...........++++.+.+.+|. .+..+ +... ...+++.+++.|+|.||++.
T Consensus 73 s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~~pr~l--~G~~--~P~~i~~~v~~GvD~fDs~~ 142 (238)
T PF01702_consen 73 SAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPPDKPRYL--LGVG--TPEEILEAVYLGVDLFDSSY 142 (238)
T ss_dssp HHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TTS-EEE--TTB---SHHHHHHHHHTT--EEEESH
T ss_pred HHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCcccceec--cCCC--CHHHHHHHHHcCCcEEcchH
Confidence 4566777568888888766555778899999999888874 55444 2222 46789999999999999996
No 453
>PRK06852 aldolase; Validated
Probab=78.67 E-value=24 Score=32.94 Aligned_cols=109 Identities=12% Similarity=0.097 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCC--CccCHHHHHHHHHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTI--GVGTPGTMRLMLEDV 209 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~--G~~~P~~~~~~~~~~ 209 (327)
.++++++.++++.|++.|+.+-+ .++.-|.......+++.+...++...++|+|.|-..=|. |-..|+.+.+.+.
T Consensus 150 ~~ml~~l~~v~~ea~~~GlPll~-~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~-- 226 (304)
T PRK06852 150 SEMLSEAAQIIYEAHKHGLIAVL-WIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVL-- 226 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEE-EeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHH--
Confidence 34688899999999999999754 455555333334677899999999999999998876552 2234666555443
Q ss_pred HHhcCCCeEEEeecCCcC--cHHHHHHHHHH-hcCceee
Q psy12516 210 LTVIPADRLAVHCHDTYG--QALANILTAME-FGISVFD 245 (327)
Q Consensus 210 ~~~~~~~~l~~H~Hn~~g--~a~an~l~a~~-~G~~~vd 245 (327)
....+|+-+=.=-..+ -.+..+..+++ +|+..+.
T Consensus 227 --~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~ 263 (304)
T PRK06852 227 --AAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNA 263 (304)
T ss_pred --hCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceee
Confidence 3422455542211111 13555566767 7776554
No 454
>PRK15108 biotin synthase; Provisional
Probab=78.54 E-value=20 Score=33.99 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=39.7
Q ss_pred HHHHHHHHcCcCEEEecCCccccCH-----HHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTP-----GTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSI 75 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p-----~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~ 75 (327)
+.++.+.+.|+++|++. ++|. .| ..+.++++.+++. + +.+. .. .|.-....+..+ ++|++.+...+
T Consensus 83 ~~a~~~~~~G~~~i~i~-~~g~-~p~~~~~e~i~~~i~~ik~~-~-i~v~--~s--~G~ls~e~l~~LkeAGld~~n~~l 154 (345)
T PRK15108 83 ESARKAKAAGSTRFCMG-AAWK-NPHERDMPYLEQMVQGVKAM-G-LETC--MT--LGTLSESQAQRLANAGLDYYNHNL 154 (345)
T ss_pred HHHHHHHHcCCCEEEEE-ecCC-CCCcchHHHHHHHHHHHHhC-C-CEEE--Ee--CCcCCHHHHHHHHHcCCCEEeecc
Confidence 45667778899998774 2222 22 3456666666642 2 3332 11 233235566666 79999888766
Q ss_pred cC
Q psy12516 76 AG 77 (327)
Q Consensus 76 ~g 77 (327)
..
T Consensus 155 eT 156 (345)
T PRK15108 155 DT 156 (345)
T ss_pred cc
Confidence 54
No 455
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=78.49 E-value=24 Score=32.70 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=48.2
Q ss_pred cHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc-CCeEEEEEeeeccCCCCCCCCh
Q psy12516 92 ATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN-GIRVRGYISCVVGCPYEGAVPP 170 (327)
Q Consensus 92 ~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~-Gi~v~~~l~~~~g~~~~~r~~~ 170 (327)
+.+++....+.. .+.|+|.+.+-...-....+...+....+..+.+.++++..++. .+.+.+-+. | +.
T Consensus 111 ~~~~~~~~a~~~-~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~-----~-----~~ 179 (299)
T cd02940 111 NKEDWTELAKLV-EEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT-----P-----NI 179 (299)
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC-----C-----Cc
Confidence 446666655433 33456655442221111111122222212234556666666543 455443221 2 22
Q ss_pred HHHHHHHHHHHHcCcCEEEecCCCC
Q psy12516 171 HNVTRVATALYKMGCYEISLGDTIG 195 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt~G 195 (327)
+.+.++++.+.+.|+|.|.+.+|..
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~Nt~~ 204 (299)
T cd02940 180 TDIREIARAAKEGGADGVSAINTVN 204 (299)
T ss_pred hhHHHHHHHHHHcCCCEEEEecccc
Confidence 4678899999999999999877664
No 456
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=78.48 E-value=23 Score=31.04 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHHHcCcCEEEec----------CCCCc---cCHHHHHHHHHHHHHhcCCCeEEEeec--CCcC-cHHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLG----------DTIGV---GTPGTMRLMLEDVLTVIPADRLAVHCH--DTYG-QALA 231 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~----------Dt~G~---~~P~~~~~~~~~~~~~~~~~~l~~H~H--n~~g-~a~a 231 (327)
.+++.+.+.++.+.++|+|.|.|- |..|. -.|+.+.++++.+++..+ .++.+-.- .+.. -...
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~ 142 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLE 142 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHH
Confidence 467889999999999999988874 33332 378889999999998876 35554332 1221 1222
Q ss_pred HHHHHHHhcCceeeec
Q psy12516 232 NILTAMEFGISVFDSS 247 (327)
Q Consensus 232 n~l~a~~~G~~~vd~s 247 (327)
-+....++|++.+..+
T Consensus 143 ~~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 143 LAKALEDAGASALTVH 158 (231)
T ss_pred HHHHHHHhCCCEEEEC
Confidence 2233446799998654
No 457
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=78.39 E-value=8.5 Score=33.99 Aligned_cols=134 Identities=15% Similarity=0.138 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh-cC
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV-IP 214 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~-~~ 214 (327)
+.+++-+.+++++++.|. .=|..++-++..+.+.++.+.+.+.|.+.|.|+|-+=-++-++-.+++.+..+. +-
T Consensus 60 d~V~ekid~y~e~~i~v~-----pGGtlfe~a~~~~kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~ 134 (258)
T COG1809 60 DQVKEKIDMYKENDIYVF-----PGGTLFEIAYSQDKVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFM 134 (258)
T ss_pred HHHHHHHHHHHHcCceec-----CCceEEEeehhcccHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccE
Confidence 346777899999999874 122334457888899999999999999999999988788889999999888875 21
Q ss_pred -CCeEEEeecCCcCcH------HHHHHHHHHhcCcee--eeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 215 -ADRLAVHCHDTYGQA------LANILTAMEFGISVF--DSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 215 -~~~l~~H~Hn~~g~a------~an~l~a~~~G~~~v--d~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
-.+++-.-- +.+-+ +--.-..+++|++.| ++...|.++.++. ..|+....++-...+..|
T Consensus 135 vlsEvGkk~~-e~~~~l~~~d~~k~i~~dvdaGa~~vi~eAresg~~~Gi~~--~~g~~r~~~~~~ii~~l~ 203 (258)
T COG1809 135 VLSEVGKKDP-ESDSALSPDDRVKLINDDVDAGAEYVIAEARESGKEIGITD--NEGEVREGELDSIIKGLG 203 (258)
T ss_pred EehhhcccCc-chhhhcChHHHHHHHHHHHHcchHHhhhhhhhhccccCccc--cccchhhhHHHHHHhcCC
Confidence 012222111 12211 223445688999886 5566666443433 345666555555444433
No 458
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=78.38 E-value=49 Score=30.12 Aligned_cols=105 Identities=20% Similarity=0.154 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC--CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG--AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDV 209 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~--r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~ 209 (327)
.|.++++.++++.|++.|+.+. ..++.-|.-+.. ..+++.+....+...++|+|.|-..=| | .| +.|+.+
T Consensus 126 ~~~i~~~~~v~~~a~~~Gmp~v-~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~yt-g--~~----e~F~~v 197 (265)
T COG1830 126 REMIENISQVVEDAHELGMPLV-AWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYT-G--DP----ESFRRV 197 (265)
T ss_pred HHHHHHHHHHHHHHHHcCCceE-EEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCC-C--Ch----HHHHHH
Confidence 4568899999999999999864 234433322212 467888888899999999998864332 2 23 345555
Q ss_pred HHhcCCCeEEEeec---CCcCcHHHHHHHHHHhcCceee
Q psy12516 210 LTVIPADRLAVHCH---DTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 210 ~~~~~~~~l~~H~H---n~~g~a~an~l~a~~~G~~~vd 245 (327)
.+..| +|+.+-.= ++.--.+.-.-.++++|+..+.
T Consensus 198 v~~~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~ 235 (265)
T COG1830 198 VAACG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVA 235 (265)
T ss_pred HHhCC-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchh
Confidence 55556 56665322 2333456666677777766544
No 459
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=78.35 E-value=54 Score=29.92 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=29.1
Q ss_pred HHHHHHcCcCEEEecCCc-----cc-----cCHHHHHHHHHHHHhhcC
Q psy12516 4 ASALYKMGCYEISLGDTI-----GV-----GTPGTMRLMLEDVLTVIP 41 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt~-----G~-----~~p~~~~~~~~~~~~~~~ 41 (327)
|+.+.++|+|.|...|+. |. .|.+++-..++.+.+..|
T Consensus 28 A~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~ 75 (263)
T TIGR00222 28 AKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAP 75 (263)
T ss_pred HHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCC
Confidence 566778999999999988 44 666777777777777654
No 460
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.35 E-value=48 Score=29.33 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCcCEEEecCC--CCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCceeeecc
Q psy12516 172 NVTRVATALYKMGCYEISLGDT--IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVFDSSI 248 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt--~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~vd~s~ 248 (327)
...++++.+.+.|++.|.+-|+ .|...+.. .++++.+++..+ +|+..-. |.. ..+.....+.|++.|=.+-
T Consensus 150 ~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~-~~~i~~i~~~~~-iPvia~G----GI~~~~di~~~~~~Ga~gv~vgs 223 (241)
T PRK13585 150 TPVEAAKRFEELGAGSILFTNVDVEGLLEGVN-TEPVKELVDSVD-IPVIASG----GVTTLDDLRALKEAGAAGVVVGS 223 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecCCCCcCCCC-HHHHHHHHHhCC-CCEEEeC----CCCCHHHHHHHHHcCCCEEEEEH
Confidence 5567788888999999888765 55555432 345677776654 4666543 233 3455556778888754322
Q ss_pred ccCCCCCCCCCCCCCccHHHHHHHH
Q psy12516 249 AGLGGCPYARGASGNVATEDLVYML 273 (327)
Q Consensus 249 ~G~G~~p~~~g~~Gn~~~e~~~~~l 273 (327)
.-+ .+.-++++.+..+
T Consensus 224 a~~---------~~~~~~~~~~~~~ 239 (241)
T PRK13585 224 ALY---------KGKFTLEEAIEAV 239 (241)
T ss_pred HHh---------cCCcCHHHHHHHh
Confidence 222 2344566666554
No 461
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=78.26 E-value=53 Score=29.78 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecC-CCCccCHHHHHHHHHHHHHhcC
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGD-TIGVGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~D-t~G~~~P~~~~~~~~~~~~~~~ 214 (327)
+.+.++++++++.|+.+.+-+ ++.+++ +++.+.|++.|.+-. +.....|. .+.+..+.+.+|
T Consensus 147 ~~l~~li~~a~~lGl~~lvev-----------h~~~E~----~~A~~~gadiIgin~rdl~~~~~d--~~~~~~l~~~~p 209 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEV-----------HDEEEL----ERALKLGAPLIGINNRNLKTFEVD--LETTERLAPLIP 209 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEe-----------CCHHHH----HHHHHcCCCEEEECCCCcccccCC--HHHHHHHHHhCC
Confidence 356777888888998864321 344444 446678999888753 00112221 223444444455
Q ss_pred C-CeEEEeecCCcCc-HHHHHHHHHHhcCcee
Q psy12516 215 A-DRLAVHCHDTYGQ-ALANILTAMEFGISVF 244 (327)
Q Consensus 215 ~-~~l~~H~Hn~~g~-a~an~l~a~~~G~~~v 244 (327)
. .++..-. |. ...+...+.++|++.|
T Consensus 210 ~~~~vIaeg----GI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 210 SDRLVVSES----GIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred CCCEEEEEe----CCCCHHHHHHHHHcCCCEE
Confidence 3 1222211 22 3566677788898765
No 462
>KOG1577|consensus
Probab=78.20 E-value=36 Score=31.64 Aligned_cols=147 Identities=15% Similarity=0.109 Sum_probs=83.1
Q ss_pred CccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCC
Q psy12516 51 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCT 130 (327)
Q Consensus 51 ~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s 130 (327)
...+.....+..|+++|.+.||++...-.| +++-.++++.--+.++.+-.+|... ++-.+
T Consensus 25 ~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE-------------~evG~aik~~i~~~~v~RediFiTS-------Klw~~ 84 (300)
T KOG1577|consen 25 SPPGQVAEAVKAAIKAGYRHIDTAHVYGNE-------------KEVGEAIKELLAEGGVKREDIFITS-------KLWPT 84 (300)
T ss_pred cChhhHHHHHHHHHHhCcceeechhhhCCh-------------HHHHHHHHHHhhhCCcchhhheeee-------ccCcc
Confidence 556777778899999999999988765444 4555556655545666665554321 22111
Q ss_pred hHHHHHHHHHHHHH-HHHcCCe-EEEEEeeeccCCCCC---------------CCChHHHHHHHHHHHHcC-cCEEEecC
Q psy12516 131 IEESLERFSEVVST-ALTNGIR-VRGYISCVVGCPYEG---------------AVPPHNVTRVATALYKMG-CYEISLGD 192 (327)
Q Consensus 131 ~ee~i~~~~~~v~~-a~~~Gi~-v~~~l~~~~g~~~~~---------------r~~~e~l~~~~~~~~~~g-~~~i~l~D 192 (327)
. ...+...+.++. .++.|.. +..++..+ |... ..+.....+..+.+.+.| +..|.++.
T Consensus 85 ~-~~~~~v~~al~~sLk~L~ldYvDLyLiH~---P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSN 160 (300)
T KOG1577|consen 85 D-HAPELVEKALEKSLKKLQLDYVDLYLIHW---PVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSN 160 (300)
T ss_pred c-cChhhHHHHHHHHHHHhChhhhheeeEec---ccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeec
Confidence 0 002233333432 3444553 55665542 2211 124455667777888888 45565443
Q ss_pred CCCccCHHHHHHHHHHHHHhcCCC-eEEEeecCCc
Q psy12516 193 TIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTY 226 (327)
Q Consensus 193 t~G~~~P~~~~~~~~~~~~~~~~~-~l~~H~Hn~~ 226 (327)
....++.++++.- +.-|.+ .+++|.+-+.
T Consensus 161 ----F~~~~le~ll~~~-ki~P~vnQvE~HP~~~Q 190 (300)
T KOG1577|consen 161 ----FNIKQLEELLNLA-KIKPAVNQVECHPYLQQ 190 (300)
T ss_pred ----CCHHHHHHHHhcC-CCCCccceeeccCCcCh
Confidence 5567777776654 222432 5888886654
No 463
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=78.17 E-value=12 Score=32.61 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.+.+...++++.+.+.|.+.+.+.=+. | ...+.++.+++++|++-++..+=-| ...+..|+++|++++=+
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t----~-~a~~~I~~l~~~~p~~~vGAGTV~~----~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT----P-NALEAIEALRKEFPDLLVGAGTVLT----AEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS----T-THHHHHHHHHHHHTTSEEEEES--S----HHHHHHHHHHT-SEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC----c-cHHHHHHHHHHHCCCCeeEEEeccC----HHHHHHHHHcCCCEEEC
Confidence 577899999999999999988886553 4 4567788899999998888755433 35678899999998644
No 464
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=78.09 E-value=8.7 Score=36.19 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCC-ccCHHHHHHHHHHHHHhcCCCeEEEee---------cCCcCcHHHHHHHH
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIG-VGTPGTMRLMLEDVLTVIPADRLAVHC---------HDTYGQALANILTA 236 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~~~~~~~~~~~~~~~~~l~~H~---------Hn~~g~a~an~l~a 236 (327)
..+++++.+.++.+.+.|+++|+|.+-.. ...++.+.++++.+++..|.+ .+|+ -...|+.....+..
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i--~~~~~s~~ei~~~~~~~g~~~~e~l~~ 148 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHI--HIHSFSPVEIVYIAKKEGLSLREVLER 148 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCc--CCCCCCHHHHHHHhccCCCCHHHHHHH
Confidence 47889999999999999999999953222 234556778899998876543 3332 11335554444454
Q ss_pred H-HhcCceee
Q psy12516 237 M-EFGISVFD 245 (327)
Q Consensus 237 ~-~~G~~~vd 245 (327)
+ ++|++.++
T Consensus 149 Lk~aG~~~~~ 158 (340)
T TIGR03699 149 LKEAGLDSIP 158 (340)
T ss_pred HHHcCCCcCC
Confidence 4 78998776
No 465
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=77.84 E-value=16 Score=33.54 Aligned_cols=67 Identities=22% Similarity=0.163 Sum_probs=49.6
Q ss_pred HHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 175 ~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
+-++.+.++|+|.|.+= -++|+++.+.++.+++..+.+.+++= -|.-..|..+=...|+|.|-++-.
T Consensus 199 eea~ea~~~GaDiI~lD----n~~~e~l~~~v~~l~~~~~~~~leas----GGI~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 199 EQALTVLQASPDILQLD----KFTPQQLHHLHERLKFFDHIPTLAAA----GGINPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred HHHHHHHHcCcCEEEEC----CCCHHHHHHHHHHHhccCCCEEEEEE----CCCCHHHHHHHHhcCCCEEEeCcc
Confidence 33445668999998764 58999999999998765565555553 366677888888999999866544
No 466
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=77.74 E-value=8.7 Score=36.07 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCcCEEEecC-CCCccCHHHHHHHH
Q psy12516 172 NVTRVATALYKMGCYEISLGD-TIGVGTPGTMRLML 206 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~D-t~G~~~P~~~~~~~ 206 (327)
.+.++++...++|++.|.+.| +.+.++|++..+++
T Consensus 178 ~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~ 213 (335)
T cd00717 178 ATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFV 213 (335)
T ss_pred HHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHH
Confidence 345556666678999999999 55678888877665
No 467
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=77.70 E-value=37 Score=27.63 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=58.3
Q ss_pred HHHHHH--HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHH
Q psy12516 59 NILTAM--EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLE 136 (327)
Q Consensus 59 ~~~~a~--~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~ 136 (327)
|++..+ .+|...+|.+. ..++|+++... .+.+.|.+.+..-.. .+ ..
T Consensus 19 ~iv~~~l~~~GfeVi~LG~--------------~v~~e~~v~aa----~~~~adiVglS~l~~---------~~----~~ 67 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGV--------------LSPQEEFIKAA----IETKADAILVSSLYG---------HG----EI 67 (134)
T ss_pred HHHHHHHHHCCCEEEECCC--------------CCCHHHHHHHH----HHcCCCEEEEecccc---------cC----HH
Confidence 444444 58999888322 35678887654 455566554421110 01 44
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDT 193 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt 193 (327)
.++++++..++.|+.-.. + ..|-. -..+++...+..+.+.++|++.+.=+.|
T Consensus 68 ~~~~~~~~l~~~gl~~~~-v--ivGG~--~vi~~~d~~~~~~~l~~~Gv~~vF~pgt 119 (134)
T TIGR01501 68 DCKGLRQKCDEAGLEGIL-L--YVGGN--LVVGKQDFPDVEKRFKEMGFDRVFAPGT 119 (134)
T ss_pred HHHHHHHHHHHCCCCCCE-E--EecCC--cCcChhhhHHHHHHHHHcCCCEEECcCC
Confidence 567788888888874221 1 12210 0245666666777889999999886666
No 468
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=77.64 E-value=15 Score=34.29 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=80.2
Q ss_pred cHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcC-ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCh
Q psy12516 92 ATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINC-TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPP 170 (327)
Q Consensus 92 ~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~-s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~ 170 (327)
..-+++..+.+.++.+ -++.+..|...+.+++- -+++.+++++++++.++++|+.+...|+=-....+.+..+.
T Consensus 16 ~R~~l~~f~~~~kmN~-----YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~ 90 (306)
T PF07555_consen 16 DRLDLIRFLGRYKMNT-----YIYAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISPGLDICYSSEEDF 90 (306)
T ss_dssp HHHHHHHHHHHTT--E-----EEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHH
T ss_pred HHHHHHHHHHHcCCce-----EEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECcccccccCcHHHH
Confidence 3444555554444433 34667777655556654 34555899999999999999997655442000001111233
Q ss_pred HHHHHHHHHHHHcCcCEE--EecCCCC----------ccCHHHHHHHHHHHHHhcCCC-----eEEEeecCCcCc-HHHH
Q psy12516 171 HNVTRVATALYKMGCYEI--SLGDTIG----------VGTPGTMRLMLEDVLTVIPAD-----RLAVHCHDTYGQ-ALAN 232 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i--~l~Dt~G----------~~~P~~~~~~~~~~~~~~~~~-----~l~~H~Hn~~g~-a~an 232 (327)
+.+.+-.+++.++|++.+ .+=|..+ ......-.++++.+.+.+... ++.+..-.=.+- +...
T Consensus 91 ~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v~~~l~~~~~~~~~l~~cPt~Y~~~~~~~~ 170 (306)
T PF07555_consen 91 EALKAKFDQLYDLGVRSFAILFDDIDGDLWHCDKDDFNSLAQAQARLLNRVNKELIKKKGDVKPLIFCPTEYCGDWASPE 170 (306)
T ss_dssp HHHHHHHHHHHCTT--EEEEE-TS-SSC--TTTTTT-SCHHHHHHHHHHHHHHHTTTCSSSS--EEEE-SS-SCHHHCCH
T ss_pred HHHHHHHHHHHhcCCCEEEEeecCCCCccccccccccchHHHHHHHHHHHHHHHHhccCCCCCCceEEChhhcCCCCChH
Confidence 445555678888999854 4445444 244455666788887766422 355433322222 2225
Q ss_pred HHHHHHhcC-ceeeeccccCCC
Q psy12516 233 ILTAMEFGI-SVFDSSIAGLGG 253 (327)
Q Consensus 233 ~l~a~~~G~-~~vd~s~~G~G~ 253 (327)
.+..+..+. ..|+.-..|-+-
T Consensus 171 Yl~~l~~~L~~~i~i~WTG~~V 192 (306)
T PF07555_consen 171 YLRTLGEQLDPDIQIFWTGPKV 192 (306)
T ss_dssp HHHHHHHHS-TTSEEEE-CSSS
T ss_pred HHHHHHhhCCCCCEEEEcCCce
Confidence 788877664 446666666655
No 469
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=77.60 E-value=8.6 Score=36.37 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCcCEEEecCC-CCccCHHHHHHHH
Q psy12516 173 VTRVATALYKMGCYEISLGDT-IGVGTPGTMRLML 206 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~~~~~~ 206 (327)
+.++++...+.|++.|.+.|+ .+.++|+...+++
T Consensus 188 ~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~ 222 (346)
T PRK00115 188 TIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFV 222 (346)
T ss_pred HHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHH
Confidence 445556566789999999995 5578887777654
No 470
>PLN02417 dihydrodipicolinate synthase
Probab=77.57 E-value=55 Score=29.92 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC--EEEecCCCCc-cCHHH
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY--EISLGDTIGV-GTPGT 201 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~--~i~l~Dt~G~-~~P~~ 201 (327)
+...+..+.|++.|..... ...|+-.+.+.+.+.+.++.+.+.. . ...++...|. ++|+.
T Consensus 83 ~~~i~~a~~a~~~Gadav~-----~~~P~y~~~~~~~i~~~f~~va~~~-pi~lYn~P~~tg~~l~~~~ 145 (280)
T PLN02417 83 REAIHATEQGFAVGMHAAL-----HINPYYGKTSQEGLIKHFETVLDMG-PTIIYNVPGRTGQDIPPEV 145 (280)
T ss_pred HHHHHHHHHHHHcCCCEEE-----EcCCccCCCCHHHHHHHHHHHHhhC-CEEEEEChhHhCcCCCHHH
Confidence 3445555666777765321 1134444556677777777666654 3 2233444554 44443
No 471
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=77.55 E-value=18 Score=33.32 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=45.7
Q ss_pred HHHHHHHHcCcCEEEe--c--------CCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEE
Q psy12516 2 KVASALYKMGCYEISL--G--------DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~--~--------Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~i 71 (327)
+.++++.+.|+|.|.| . +.. ..+|..+.++++.+++.. +.++.+-.--+..-...-+..+.++|++.|
T Consensus 106 ~~a~~~~~~G~d~iElN~~cP~~~~~g~~~-~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i 183 (296)
T cd04740 106 EVAEKLADAGADAIELNISCPNVKGGGMAF-GTDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGL 183 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCcccc-cCCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEE
Confidence 4678888999997766 2 111 267889999999999876 366666543332212222334557999988
Q ss_pred Ee
Q psy12516 72 DS 73 (327)
Q Consensus 72 d~ 73 (327)
..
T Consensus 184 ~~ 185 (296)
T cd04740 184 TL 185 (296)
T ss_pred EE
Confidence 65
No 472
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=77.36 E-value=18 Score=32.85 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCC-CChHHHHHHHHHHHHcCcCEEEecCC-C-Cc-cCHHHHHH--HHHHHHHh
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGA-VPPHNVTRVATALYKMGCYEISLGDT-I-GV-GTPGTMRL--MLEDVLTV 212 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r-~~~e~l~~~~~~~~~~g~~~i~l~Dt-~-G~-~~P~~~~~--~~~~~~~~ 212 (327)
.++++.+.+.|..|. ++. +. .+++++...++.+.+.|.+.|.|+.. + .. -.|....+ .+..+++.
T Consensus 122 ~~LL~~~a~~gkPVi--lk~-------G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~ 192 (260)
T TIGR01361 122 FELLKEVGKQGKPVL--LKR-------GMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKE 192 (260)
T ss_pred HHHHHHHhcCCCcEE--EeC-------CCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHh
Confidence 346677777888875 232 22 38999999999999999988888774 2 22 22222222 35667766
Q ss_pred cCCCeEEE-eecC--CcCcHHHHHHHHHHhcCc--eeeecc
Q psy12516 213 IPADRLAV-HCHD--TYGQALANILTAMEFGIS--VFDSSI 248 (327)
Q Consensus 213 ~~~~~l~~-H~Hn--~~g~a~an~l~a~~~G~~--~vd~s~ 248 (327)
++ .||++ -.|- +.-+....+++|+..|++ .|+.-+
T Consensus 193 ~~-~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 193 TH-LPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred hC-CCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 64 68888 5664 234557778899999999 566533
No 473
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=77.36 E-value=48 Score=31.32 Aligned_cols=134 Identities=14% Similarity=0.097 Sum_probs=75.3
Q ss_pred hhcccCcchhhhhhhh--------hHH--HHHHhhcCChHHHHHHHHHHHHHHHHc-CCeEEEEEeeeccCCCC----CC
Q psy12516 103 KSMQCGVKEIAVFASA--------SEM--FSKRNINCTIEESLERFSEVVSTALTN-GIRVRGYISCVVGCPYE----GA 167 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~--------sd~--~~~~~l~~s~ee~i~~~~~~v~~a~~~-Gi~v~~~l~~~~g~~~~----~r 167 (327)
.+.++|+|.+.+-..- |+. ++.-.++-+.+...+-+.++++..|+. |... +.+.... .++. .-
T Consensus 160 ~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~-v~vRis~-~~~~~~~~~~ 237 (338)
T cd02933 160 NAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADR-VGIRLSP-FGTFNDMGDS 237 (338)
T ss_pred HHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCc-eEEEECc-cccCCCCCCC
Confidence 5667898877664222 221 122224455666667777777776664 4422 2222210 1111 12
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecC--CCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhc-Ccee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGD--TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFG-ISVF 244 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~D--t~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G-~~~v 244 (327)
.+.++..++++.+.+.|+|.|.+.. +... .+....++.+.+|+.++ +||..=.--+ ...+..+++.| +|.|
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~~~~ik~~~~-ipvi~~G~i~----~~~a~~~l~~g~~D~V 311 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPDFLDFLRKAFK-GPLIAAGGYD----AESAEAALADGKADLV 311 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchHHHHHHHHHcC-CCEEEECCCC----HHHHHHHHHcCCCCEE
Confidence 4678899999999999999988832 2111 12234456777887765 3544422222 56677888876 6654
No 474
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=77.32 E-value=14 Score=31.25 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=49.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 75 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~ 75 (327)
+.++++.++|+|.|.|=- ++|.++++.++.++...|.+.+.+-. |....|+.+..+.|++.|.++-
T Consensus 91 ee~~ea~~~g~d~I~lD~----~~~~~~~~~v~~l~~~~~~v~ie~SG----GI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDN----MSPEDLKEAVEELRELNPRVKIEASG----GITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHHHHHTT-SEEEEES-----CHHHHHHHHHHHHHHTTTSEEEEES----SSSTTTHHHHHHTT-SEEEECH
T ss_pred HHHHHHHHhCCCEEEecC----cCHHHHHHHHHHHhhcCCcEEEEEEC----CCCHHHHHHHHhcCCCEEEcCh
Confidence 567888999999987743 38999999999998877777777654 3445677777799999998753
No 475
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=77.22 E-value=17 Score=34.16 Aligned_cols=97 Identities=22% Similarity=0.262 Sum_probs=66.4
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
+|.+...+..+++.++|+|.++++= - -.+-.+-++.++++.+ +||..-+|-|+-+| +.+++.|++.+--
T Consensus 33 ~Dv~aTv~QI~~L~~aG~dIVRvtv----~-~~e~A~A~~~Ik~~~~-vPLVaDiHf~~rla----~~~~~~g~~k~RI- 101 (361)
T COG0821 33 ADVEATVAQIKALERAGCDIVRVTV----P-DMEAAEALKEIKQRLN-VPLVADIHFDYRLA----LEAAECGVDKVRI- 101 (361)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEec----C-CHHHHHHHHHHHHhCC-CCEEEEeeccHHHH----HHhhhcCcceEEE-
Confidence 5778888888899999999766531 1 1356677999999885 68887777777666 6777888775432
Q ss_pred cccCCCCCCCCCCCCCcc----HHHHHHHHHhCCCC--CCCChhhH
Q psy12516 248 IAGLGGCPYARGASGNVA----TEDLVYMLEGMGIE--TGADLTSL 287 (327)
Q Consensus 248 ~~G~G~~p~~~g~~Gn~~----~e~~~~~l~~~g~~--~~~d~~~l 287 (327)
+ .||.- ..+++...+++|+. .|+|.-.|
T Consensus 102 -N-----------PGNig~~~~v~~vVe~Ak~~g~piRIGVN~GSL 135 (361)
T COG0821 102 -N-----------PGNIGFKDRVREVVEAAKDKGIPIRIGVNAGSL 135 (361)
T ss_pred -C-----------CcccCcHHHHHHHHHHHHHcCCCEEEecccCch
Confidence 1 23433 56677777776654 45665443
No 476
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=77.19 E-value=68 Score=30.44 Aligned_cols=214 Identities=12% Similarity=0.052 Sum_probs=114.0
Q ss_pred HHHhhcCCCe-eEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhh---hhhcccCcc
Q psy12516 35 DVLTVIPADR-LAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE---GKSMQCGVK 110 (327)
Q Consensus 35 ~~~~~~~~~~-~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~---~~~~~~Gid 110 (327)
.+.+.+| + +..|.|-+..+....+++-.+. ..++. +.-+. .--...+++..... +...+.|+.
T Consensus 19 ~~~~~lP--K~~eLH~Hl~Gsi~~~tl~~la~~--~fl~~-f~~~~--------~~l~~~~~~~~~~~~~~~d~~~dgV~ 85 (345)
T cd01321 19 KIIQKMP--KGALLHVHDTAMVSSDWLIKNATY--RFEQI-FDIID--------GLLTYLPIFRDYYRRLLEELYEDNVQ 85 (345)
T ss_pred HHHHhCC--ChHhhccCccccCCHHHHHHHHHH--HHHHH-HHHHH--------HHhcCHHHHHHHHHHHHHHHHHcCCE
Confidence 3445667 5 5788888877666555533322 11100 00000 00112233332222 234555666
Q ss_pred hhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHH-c--CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc---C
Q psy12516 111 EIAVFASASEMFSKRNINCTIEESLERFSEVVSTALT-N--GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM---G 184 (327)
Q Consensus 111 ~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~-~--Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~---g 184 (327)
.+.+...-...+...+-+.+.+++++.+.+.++.+++ . |+.+...++.. - ..+++...+.++.+.++ .
T Consensus 86 Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~~-----R-~~~~e~~~e~~~~a~~~~~~~ 159 (345)
T cd01321 86 YVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKTHPDFIGLKIIYATL-----R-NFNDSEIKESMEQCLNLKKKF 159 (345)
T ss_pred EEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEEEec-----C-CCCHHHHHHHHHHHHHHHHhC
Confidence 5554332221222223467888888888877776533 3 56666544431 1 24566666666665553 2
Q ss_pred cCEEEecCCCCc----cCHHHHHHHHHHHHHhcCCCeEEEeecCCc--CcH-HHHHHHHHHhcCceeeeccccCCCCCCC
Q psy12516 185 CYEISLGDTIGV----GTPGTMRLMLEDVLTVIPADRLAVHCHDTY--GQA-LANILTAMEFGISVFDSSIAGLGGCPYA 257 (327)
Q Consensus 185 ~~~i~l~Dt~G~----~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~--g~a-~an~l~a~~~G~~~vd~s~~G~G~~p~~ 257 (327)
.+.|.=-|-.|- ..|....+.+...++.-+++++.+|+=... |.. ..|...|+..|+++|.=.+.-
T Consensus 160 ~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~RIGHG~~~------- 232 (345)
T cd01321 160 PDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLLNTKRIGHGFAL------- 232 (345)
T ss_pred CCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHhCCCcCcccccc-------
Confidence 222222244442 236777788888887644478899987554 322 347777888999998754441
Q ss_pred CCCCCCccHHHHHHHHHhCCCCC
Q psy12516 258 RGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 258 ~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
..-++++..|++.++-.
T Consensus 233 ------~~dp~ll~~l~~~~I~l 249 (345)
T cd01321 233 ------PKHPLLMDLVKKKNIAI 249 (345)
T ss_pred ------CcCHHHHHHHHHcCCeE
Confidence 11256777777665543
No 477
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=77.15 E-value=63 Score=32.22 Aligned_cols=154 Identities=13% Similarity=0.075 Sum_probs=86.4
Q ss_pred ccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC---CeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 106 QCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG---IRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 106 ~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G---i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
+.|+..+.+.......+.......+.++.++.+.+.++.+++.. +.+.. ..+ ..- ..+++...+.++.+.+
T Consensus 208 ~DgV~Y~ElR~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~fi~~rl--I~~---~~R-~~~~~~~~~~~~~a~~ 281 (479)
T TIGR01431 208 ADNVQYLELRSTLFILYELEGTSHDEEDSVRIYKEVTEKFMAEHPDFIGSKL--IYS---PLR-NKDKEELDNYIKVAME 281 (479)
T ss_pred HcCCEEEEEEecCchHhhcCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEE--EEE---ccC-CCCHHHHHHHHHHHHH
Confidence 34554444332222223333334577788888888888776644 44443 221 221 2467777777776665
Q ss_pred c---CcCEEEecCCCCcc----CHHHHHHHHHHHHHhcCCCeEEEeecCCc--Cc-HHHHHHHHHHhcCceeeeccccCC
Q psy12516 183 M---GCYEISLGDTIGVG----TPGTMRLMLEDVLTVIPADRLAVHCHDTY--GQ-ALANILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 183 ~---g~~~i~l~Dt~G~~----~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~--g~-a~an~l~a~~~G~~~vd~s~~G~G 252 (327)
+ -.+.|.=-|-+|.- .|....+.+..+++. .++++.+|+=.+. |. .-.|...|+..|+++|.=.+.
T Consensus 282 ~k~~~p~~vvGfDL~G~E~~g~pl~~f~~~~~~~~~~-~gl~~t~HAGE~~~~g~~~d~nl~dAIlLg~~RIGHG~~--- 357 (479)
T TIGR01431 282 LKEKYPDFVAGFDLVGQEDKGRSLLDFIDALLGPSDK-EKLPYFFHAGETNWQGTTVDENLIDALLLNTTRIGHGFA--- 357 (479)
T ss_pred HHhhCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEecCCcCCCCCCchhHHHHHHHcCCccccCccc---
Confidence 4 23334434666643 244444444444432 3578999987665 43 347888899999999864333
Q ss_pred CCCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 253 GCPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 253 ~~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
...-.+++..+++.++-
T Consensus 358 ----------l~~~P~l~~~vke~~I~ 374 (479)
T TIGR01431 358 ----------LVKHPLVLQMLKERNIA 374 (479)
T ss_pred ----------ccCCHHHHHHHHHhCCe
Confidence 22224677777766554
No 478
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=77.12 E-value=56 Score=29.98 Aligned_cols=124 Identities=13% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHH-HhcCceee
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFD 245 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~-~~G~~~vd 245 (327)
..+.+.+.++.+.+.+.|++.|.+.. ---+...++.++++.+++. +...+.+ .+.|.-+...+..+ ++|.++|.
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tG-GEPll~~~l~~iv~~l~~~-g~~~v~i---~TNG~ll~~~~~~l~~~g~~~v~ 113 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITG-GEPLLRKDLIEIIRRIKDY-GIKDVSM---TTNGILLEKLAKKLKEAGLDRVN 113 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEC-cccccccCHHHHHHHHHhC-CCceEEE---EcCchHHHHHHHHHHHCCCCEEE
Q ss_pred eccccCCCCCCCCCCCCCccHHHHHHHHHh---CCCC---------CCCChhhHHHHHHHHHH
Q psy12516 246 SSIAGLGGCPYARGASGNVATEDLVYMLEG---MGIE---------TGADLTSLLRTGHYICG 296 (327)
Q Consensus 246 ~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~---~g~~---------~~~d~~~l~~~~~~~~~ 296 (327)
.|+-|+-.--+..- +|..+.+.++..++. .|+. .+.|.+.+.++.+++.+
T Consensus 114 iSld~~~~~~~~~i-~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~ 175 (302)
T TIGR02668 114 VSLDTLDPEKYKKI-TGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAE 175 (302)
T ss_pred EEecCCCHHHhhhc-cCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHh
No 479
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.02 E-value=28 Score=33.42 Aligned_cols=92 Identities=13% Similarity=0.160 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec----CC-C-Ccc-CHHHHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG----DT-I-GVG-TPGTMRLMLE 207 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~----Dt-~-G~~-~P~~~~~~~~ 207 (327)
.+.+.+.++..++.+..+.. +.++....++++.+.+.|+|.|.+- |+ . +.. .|..+.++++
T Consensus 117 p~l~~~iv~~~~~~~V~v~v------------r~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik 184 (368)
T PRK08649 117 PELITERIAEIRDAGVIVAV------------SLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIY 184 (368)
T ss_pred HHHHHHHHHHHHhCeEEEEE------------ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHH
Confidence 34566677777776543321 2345567899999999999999983 21 1 222 5666444433
Q ss_pred HHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 208 DVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 208 ~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
. . +++|.. .+ -.....+..++++|||.|-..
T Consensus 185 ~----~-~ipVIa---G~-V~t~e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 185 E----L-DVPVIV---GG-CVTYTTALHLMRTGAAGVLVG 215 (368)
T ss_pred H----C-CCCEEE---eC-CCCHHHHHHHHHcCCCEEEEC
Confidence 3 3 355532 22 222456677888999999553
No 480
>PRK04326 methionine synthase; Provisional
Probab=76.88 E-value=13 Score=34.79 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=50.7
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSI 75 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~ 75 (327)
+.++.+.+.|++.|.+-|.+-...|.......+.+++.+.......+.|..+|-. ..+...+ +.|++.+..-.
T Consensus 165 ~~i~~l~~~G~~~iqidEP~l~~~~~~~~~~~~~l~~~~~~~~~~v~lH~C~G~~-~~~~~~l~~~~vd~i~~d~ 238 (330)
T PRK04326 165 EEIKNLVEAGAKYIQIDEPALATHPEDVEIAVEALNRIVKGINAKLGLHVCYGDY-SRIAPYILEFPVDQFDLEF 238 (330)
T ss_pred HHHHHHHHCCCCEEEecCchhhcCHHHHHHHHHHHHHHHhCCCCEEEEEEeCCCc-HHHHHHHHhCCCCEEEEEe
Confidence 4677889999999999999877788777555566666554444556778777753 3344444 78888766433
No 481
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=76.88 E-value=20 Score=31.40 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCcee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVF 244 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v 244 (327)
.+++...++++.+.+.|.+.+.+.=+ +| ...+.++.+++++|++.++..+=-| ...+..|+++|++++
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~----t~-~a~~~i~~l~~~~~~~~vGAGTVl~----~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLR----TP-VALDAIRLLRKEVPDALIGAGTVLN----PEQLRQAVDAGAQFI 84 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC----Cc-cHHHHHHHHHHHCCCCEEEEEeCCC----HHHHHHHHHcCCCEE
Confidence 47889999999999999998887543 23 4566788889889887787755444 356788999999987
No 482
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=76.85 E-value=15 Score=35.07 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=56.5
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCc----cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCce
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGV----GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISV 243 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~----~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~ 243 (327)
.+.+++.+.++.+.+.|+.+|.|. + |. ..++.+.++++.+++.+|.+.+++- -+.......-.++|+++
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lv-g-Ge~p~~~~~e~l~eii~~Ik~~~p~i~Iei~-----~lt~e~~~~Lk~aGv~r 175 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLV-T-GESEKAAGVEYIAEAIKLAREYFSSLAIEVQ-----PLNEEEYKKLVEAGLDG 175 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEe-e-CCCCCCCCHHHHHHHHHHHHHhCCccccccc-----cCCHHHHHHHHHcCCCE
Confidence 478999999999999999999987 3 42 4467799999999988875544331 24444445556899999
Q ss_pred eeeccccC
Q psy12516 244 FDSSIAGL 251 (327)
Q Consensus 244 vd~s~~G~ 251 (327)
+...+-..
T Consensus 176 ~~i~lET~ 183 (366)
T TIGR02351 176 VTVYQETY 183 (366)
T ss_pred EEEEeecC
Confidence 87666543
No 483
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.59 E-value=16 Score=31.93 Aligned_cols=69 Identities=14% Similarity=0.025 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.+++...++++.+.+.|.+.|.+.=+ +|. ..+.++.+++++|++.|+..+=-|. ..+..|+++|++++=
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~----tp~-a~~~I~~l~~~~~~~~vGAGTVl~~----e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLR----TPA-ALDAIRAVAAEVEEAIVGAGTILNA----KQFEDAAKAGSRFIV 81 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC----Ccc-HHHHHHHHHHHCCCCEEeeEeCcCH----HHHHHHHHcCCCEEE
Confidence 47889999999999999998887544 343 4567888888888877887655444 566889999999854
No 484
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=76.53 E-value=10 Score=34.47 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=45.5
Q ss_pred HHHHHHHHcCcCEEEecC-Cc--c--ccCHH-H---HHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYKMGCYEISLGD-TI--G--VGTPG-T---MRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~D-t~--G--~~~p~-~---~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
+.+++..+.|++.|-+.- ++ | ..++. + +..+++.+++.+ +.++.+|+++.. -+.+|+++|++.|.
T Consensus 27 ~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT~~~~-----vi~~al~~G~~iIN 100 (257)
T TIGR01496 27 AHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDTYRAE-----VARAALEAGADIIN 100 (257)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCCCHH-----HHHHHHHcCCCEEE
Confidence 567788899999999952 22 1 11333 3 455555555544 488999998875 35778888999988
Q ss_pred ec
Q psy12516 73 SS 74 (327)
Q Consensus 73 ~~ 74 (327)
..
T Consensus 101 si 102 (257)
T TIGR01496 101 DV 102 (257)
T ss_pred EC
Confidence 43
No 485
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=76.49 E-value=21 Score=33.72 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHcC-CeEEEEEeeeccCCCCCCCChHHHHHHHHHHH-HcCcCEEEecCCCCccCHHHHHHHHHHHHHhc
Q psy12516 136 ERFSEVVSTALTNG-IRVRGYISCVVGCPYEGAVPPHNVTRVATALY-KMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 136 ~~~~~~v~~a~~~G-i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
+.+.+..+.+++.| .+... ++.. .. ...+.+.+.+.++.+. +.| +.++=|.|.+++++..++-..=...+
T Consensus 87 eeIle~Ak~ak~~Ga~r~c~-~aag---r~-~~~~~~~i~~~v~~Vk~~~~---le~c~slG~l~~eq~~~L~~aGvd~y 158 (335)
T COG0502 87 EEILEAAKKAKAAGATRFCM-GAAG---RG-PGRDMEEVVEAIKAVKEELG---LEVCASLGMLTEEQAEKLADAGVDRY 158 (335)
T ss_pred HHHHHHHHHHHHcCCceEEE-EEec---cC-CCccHHHHHHHHHHHHHhcC---cHHhhccCCCCHHHHHHHHHcChhhe
Confidence 34555577788889 55432 2211 11 1267788888888888 666 56677999999999887754322211
Q ss_pred -----------CCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCC
Q psy12516 214 -----------PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 253 (327)
Q Consensus 214 -----------~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~ 253 (327)
+. -+.-|.+.|+ +-+...+-++|.+.-.+.+.||||
T Consensus 159 nhNLeTs~~~y~~-I~tt~t~edR---~~tl~~vk~~Gi~vcsGgI~GlGE 205 (335)
T COG0502 159 NHNLETSPEFYEN-IITTRTYEDR---LNTLENVREAGIEVCSGGIVGLGE 205 (335)
T ss_pred ecccccCHHHHcc-cCCCCCHHHH---HHHHHHHHHcCCccccceEecCCC
Confidence 11 2344555554 333344558999999999999999
No 486
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=76.31 E-value=53 Score=28.79 Aligned_cols=131 Identities=14% Similarity=0.105 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHHHc-CcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 168 VPPHNVTRVATALYKM-GCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.+.+.+.+.++.+.+. |--.|-++=|. +-.+.++.|++. + +.+.-+.=+....++.|.++|+++|.-
T Consensus 61 ~~~e~~i~~a~~l~~~~~~~~iKIP~T~------~gl~ai~~L~~~--g----i~v~~T~V~s~~Qa~~Aa~AGA~yvsP 128 (211)
T cd00956 61 TDAEGMVAEARKLASLGGNVVVKIPVTE------DGLKAIKKLSEE--G----IKTNVTAIFSAAQALLAAKAGATYVSP 128 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcCcH------hHHHHHHHHHHc--C----CceeeEEecCHHHHHHHHHcCCCEEEE
Confidence 4678888888888887 43345565553 333456666543 2 333334456678889999999999877
Q ss_pred ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH-hcCC---CCChhhhhcccccc
Q psy12516 247 SIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICG-KLKK---PSNSKVAKALPVKE 314 (327)
Q Consensus 247 s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~-~~~~---~~~~~~~~~~~~~~ 314 (327)
-++=+-. .|..|-.-++++...++++|+++.+=...+....+.++- .+|. .+|+.+-+..|.|.
T Consensus 129 ~vgR~~~----~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~ 196 (211)
T cd00956 129 FVGRIDD----LGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKHP 196 (211)
T ss_pred ecChHhh----cCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCc
Confidence 6664332 223455555566777777888866544444444444432 2454 36777777777775
No 487
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=76.23 E-value=21 Score=34.56 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=15.3
Q ss_pred cCEEEecC-CCCccCHHHHHHHHHHHHHhc
Q psy12516 185 CYEISLGD-TIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 185 ~~~i~l~D-t~G~~~P~~~~~~~~~~~~~~ 213 (327)
++.|++.+ |--.+.|.++.+++..+++.+
T Consensus 67 i~~iy~GGGTps~l~~~~l~~ll~~i~~~~ 96 (400)
T PRK07379 67 LQTVFFGGGTPSLLSVEQLERILTTLDQRF 96 (400)
T ss_pred eeEEEECCCccccCCHHHHHHHHHHHHHhC
Confidence 44555544 444455555555555555543
No 488
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=76.20 E-value=42 Score=31.64 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=74.9
Q ss_pred hhcccCcchhhhhhhh--------hHHH--HHHhhcCChHHHHHHHHHHHHHHHHc-C--CeEEEEEeeeccCCCCCCCC
Q psy12516 103 KSMQCGVKEIAVFASA--------SEMF--SKRNINCTIEESLERFSEVVSTALTN-G--IRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~--------sd~~--~~~~l~~s~ee~i~~~~~~v~~a~~~-G--i~v~~~l~~~~g~~~~~r~~ 169 (327)
.+.+.|.|.+.+-..- |+.. +.-.++-+.+...+-..++++..++. | +.+.+-++.... ...-.+
T Consensus 157 ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~--~~~g~~ 234 (338)
T cd04733 157 LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADF--QRGGFT 234 (338)
T ss_pred HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHc--CCCCCC
Confidence 5667899988764332 3332 22345567777777777888777764 4 333322221000 011357
Q ss_pred hHHHHHHHHHHHHcCcCEEEecCCCCcc-CHH--------------HHHHHHHHHHHhcCCCeEEEeecCCcCc-HHHHH
Q psy12516 170 PHNVTRVATALYKMGCYEISLGDTIGVG-TPG--------------TMRLMLEDVLTVIPADRLAVHCHDTYGQ-ALANI 233 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~l~Dt~G~~-~P~--------------~~~~~~~~~~~~~~~~~l~~H~Hn~~g~-a~an~ 233 (327)
.++..++++.+.+.|+|.|.+.. |.- .|. ...++.+.+|+.++ +||..=. +. ....+
T Consensus 235 ~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~-iPVi~~G----~i~t~~~a 307 (338)
T cd04733 235 EEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTK-TPLMVTG----GFRTRAAM 307 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHHHHHHHcC-CCEEEeC----CCCCHHHH
Confidence 88899999999999999888643 211 010 11345667777664 3544311 11 24566
Q ss_pred HHHHHhc-Ccee
Q psy12516 234 LTAMEFG-ISVF 244 (327)
Q Consensus 234 l~a~~~G-~~~v 244 (327)
..+++.| +|.|
T Consensus 308 ~~~l~~g~aD~V 319 (338)
T cd04733 308 EQALASGAVDGI 319 (338)
T ss_pred HHHHHcCCCCee
Confidence 6777766 4543
No 489
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.60 E-value=60 Score=30.57 Aligned_cols=121 Identities=16% Similarity=0.173 Sum_probs=74.7
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccC---------CC---------------C--CCCCh-------HHHH
Q psy12516 128 NCTIEESLERFSEVVSTALTNGIRVRGYISCVVGC---------PY---------------E--GAVPP-------HNVT 174 (327)
Q Consensus 128 ~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~---------~~---------------~--~r~~~-------e~l~ 174 (327)
+...++.++.++++++.+|+.|-.+.+.|... |. +. . ...+. +.+.
T Consensus 74 ~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~-G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~ 152 (338)
T cd04733 74 VLESGEDLEAFREWAAAAKANGALIWAQLNHP-GRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFA 152 (338)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEccCC-CcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHH
Confidence 34456678999999999999999876665541 10 00 0 01222 3344
Q ss_pred HHHHHHHHcCcCEEEec-------------------CCCCcc---CHHHHHHHHHHHHHhcC-CCeEEEeecC----CcC
Q psy12516 175 RVATALYKMGCYEISLG-------------------DTIGVG---TPGTMRLMLEDVLTVIP-ADRLAVHCHD----TYG 227 (327)
Q Consensus 175 ~~~~~~~~~g~~~i~l~-------------------Dt~G~~---~P~~~~~~~~~~~~~~~-~~~l~~H~Hn----~~g 227 (327)
+.++++.++|.|.|.|- |..|-. .+..+.++++.+|+.++ +.+|.+-.+- ..|
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g 232 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGG 232 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCC
Confidence 55667778899988762 233322 24567788999999984 5678876652 234
Q ss_pred cHHHHH----HHHHHhcCceeeeccc
Q psy12516 228 QALANI----LTAMEFGISVFDSSIA 249 (327)
Q Consensus 228 ~a~an~----l~a~~~G~~~vd~s~~ 249 (327)
+....+ -...++|+++|+++..
T Consensus 233 ~~~eea~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 233 FTEEDALEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 432222 2233679999998754
No 490
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=75.56 E-value=79 Score=30.41 Aligned_cols=122 Identities=12% Similarity=0.091 Sum_probs=75.2
Q ss_pred CChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccC--------------CCC-----------CCCChHHHHH-------H
Q psy12516 129 CTIEESLERFSEVVSTALTNGIRVRGYISCVVGC--------------PYE-----------GAVPPHNVTR-------V 176 (327)
Q Consensus 129 ~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~--------------~~~-----------~r~~~e~l~~-------~ 176 (327)
...++.++.++++++.+|+.|-.+.+.|....|. |-. ...+.+++.+ .
T Consensus 76 ~~~~~~i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~A 155 (382)
T cd02931 76 YNPTAFIRTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGES 155 (382)
T ss_pred cCCHHHhHHHHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 3345568899999999999999887776532110 000 0123334333 4
Q ss_pred HHHHHHcCcCEEEecCCC-Ccc----------------------CHHHHHHHHHHHHHhcC-CCeEEEeecC--------
Q psy12516 177 ATALYKMGCYEISLGDTI-GVG----------------------TPGTMRLMLEDVLTVIP-ADRLAVHCHD-------- 224 (327)
Q Consensus 177 ~~~~~~~g~~~i~l~Dt~-G~~----------------------~P~~~~~~~~~~~~~~~-~~~l~~H~Hn-------- 224 (327)
++++.++|.|.|.|--.. |.+ .++-+.++++.+|+.++ +.+|++..--
T Consensus 156 A~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~ 235 (382)
T cd02931 156 AVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLR 235 (382)
T ss_pred HHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccc
Confidence 455667899998886544 653 14567788999999885 4577776541
Q ss_pred ----------CcCcHHHHHH----HHHHhcCceeeecccc
Q psy12516 225 ----------TYGQALANIL----TAMEFGISVFDSSIAG 250 (327)
Q Consensus 225 ----------~~g~a~an~l----~a~~~G~~~vd~s~~G 250 (327)
+.|+...-++ ...++|+|+|++|...
T Consensus 236 ~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~ 275 (382)
T cd02931 236 QGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGS 275 (382)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 1133333332 2335799999988653
No 491
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=75.45 E-value=16 Score=33.73 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE-EEecC-CCCccCHHHHHHHHHHHHHhc
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE-ISLGD-TIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~-i~l~D-t~G~~~P~~~~~~~~~~~~~~ 213 (327)
.+++++++.|++.|+-|-+ |. -++.+.+..+.+.+.+.+... |.+.- +........+..++..+.+..
T Consensus 3 v~~~~ll~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~ 72 (287)
T PF01116_consen 3 VNMKELLKKAKEGGYAVPA-----FN-----VYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEA 72 (287)
T ss_dssp HHHHHHHHHHHHHT-BEEE-----EE------SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHCCCeEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHc
Confidence 4578889999999997752 32 257789999999999998774 33332 222233355666677777776
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
. +|+.+|. |-|........|+++|.+- +|+|-.
T Consensus 73 ~-vPValHL--DH~~~~e~i~~ai~~GftSVM~DgS~l 107 (287)
T PF01116_consen 73 S-VPVALHL--DHGKDFEDIKRAIDAGFTSVMIDGSAL 107 (287)
T ss_dssp T-SEEEEEE--EEE-SHHHHHHHHHHTSSEEEEE-TTS
T ss_pred C-CCEEeec--ccCCCHHHHHHHHHhCcccccccCCcC
Confidence 4 6887765 4455588889999999874 577754
No 492
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=75.39 E-value=12 Score=33.32 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHh
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTV 212 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~ 212 (327)
...+++++.|+.|+++...+. | .++.+.+..+...+ |.|.+ +.-.|...-..+.+.++.+|+.
T Consensus 96 ~~~~~i~~Ik~~G~kaGlaln-----P---~T~~~~l~~~l~~v-----D~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~ 162 (229)
T PRK09722 96 QAFRLIDEIRRAGMKVGLVLN-----P---ETPVESIKYYIHLL-----DKITVMTVDPGFAGQPFIPEMLDKIAELKAL 162 (229)
T ss_pred hHHHHHHHHHHcCCCEEEEeC-----C---CCCHHHHHHHHHhc-----CEEEEEEEcCCCcchhccHHHHHHHHHHHHH
Confidence 356688999999999875443 2 25667776666543 42221 3344554445566667777766
Q ss_pred cCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 213 IPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 213 ~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.+...+.+..--|-|.-..|.-...++||+.+=
T Consensus 163 ~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V 195 (229)
T PRK09722 163 RERNGLEYLIEVDGSCNQKTYEKLMEAGADVFI 195 (229)
T ss_pred HHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 543333444555889999999999999999864
No 493
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=75.14 E-value=77 Score=30.11 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC----CCChHHHHHHHHHHHHcCcCEEEecCC
Q psy12516 133 ESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG----AVPPHNVTRVATALYKMGCYEISLGDT 193 (327)
Q Consensus 133 e~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~----r~~~e~l~~~~~~~~~~g~~~i~l~Dt 193 (327)
+.++++.++++.|++.|+.+.+ .++.-|..... ..+++.+...++...++|+|.|-..=|
T Consensus 176 ~ml~~l~~i~~ea~~~GlPlv~-~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp 239 (348)
T PRK09250 176 RQIEEISEAFEEAHELGLATVL-WSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLP 239 (348)
T ss_pred HHHHHHHHHHHHHHHhCCCEEE-EecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCC
Confidence 4588889999999999999754 45554432211 234788888899999999998876654
No 494
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=74.98 E-value=62 Score=30.94 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCC-CChHHHHHHHHHHHHcCcCEEEecC--CCCccC--HH--HHHHHHHHHHH
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGA-VPPHNVTRVATALYKMGCYEISLGD--TIGVGT--PG--TMRLMLEDVLT 211 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r-~~~e~l~~~~~~~~~~g~~~i~l~D--t~G~~~--P~--~~~~~~~~~~~ 211 (327)
.++++.+.+.|..|. ++. +. .+++++...++.+.+.|.+.|.|+. +...-+ +. ++. .+..+++
T Consensus 215 ~~LL~~~a~~gkPVi--lk~-------G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~-~i~~lk~ 284 (360)
T PRK12595 215 FELLKAAGRVNKPVL--LKR-------GLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDIS-AVPILKQ 284 (360)
T ss_pred HHHHHHHHccCCcEE--EeC-------CCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHH-HHHHHHH
Confidence 366777778888875 332 22 5899999999999999998888886 221111 22 222 2566777
Q ss_pred hcCCCeEEE-eecCCcC---cHHHHHHHHHHhcCc--eeee
Q psy12516 212 VIPADRLAV-HCHDTYG---QALANILTAMEFGIS--VFDS 246 (327)
Q Consensus 212 ~~~~~~l~~-H~Hn~~g---~a~an~l~a~~~G~~--~vd~ 246 (327)
.+. .|+++ -.|- .| +....+++|+.+||+ .|+.
T Consensus 285 ~~~-~PV~~d~~Hs-~G~r~~~~~~a~aAva~GAdg~~iE~ 323 (360)
T PRK12595 285 ETH-LPVMVDVTHS-TGRRDLLLPTAKAALAIGADGVMAEV 323 (360)
T ss_pred HhC-CCEEEeCCCC-CcchhhHHHHHHHHHHcCCCeEEEEe
Confidence 665 57888 4554 44 667799999999996 5554
No 495
>PRK13753 dihydropteroate synthase; Provisional
Probab=74.76 E-value=70 Score=29.44 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred cCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcC
Q psy12516 50 HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINC 129 (327)
Q Consensus 50 h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~ 129 (327)
+.+...++..+..-++.|+++|| ++|-.. +.|-.+ .
T Consensus 21 ~~~~d~a~~~a~~m~~~GAdIID--IGgeST------rPga~~------------------------------------v 56 (279)
T PRK13753 21 RLDPAGAVTAAIEMLRVGSDVVD--VGPAAS------HPDARP------------------------------------V 56 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEE--ECCCCC------CCCCCc------------------------------------C
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHH
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDV 209 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~ 209 (327)
+.+|-++++.++++..++.+..+.+ ++..+ ++++.+.++|++.|. |..|.-.|. +..+
T Consensus 57 s~eeE~~Rv~pvI~~l~~~~~~ISI----------DT~~~-----~va~~al~aGadiIN--DVsg~~d~~-----~~~v 114 (279)
T PRK13753 57 SPADEIRRIAPLLDALSDQMHRVSI----------DSFQP-----ETQRYALKRGVGYLN--DIQGFPDPA-----LYPD 114 (279)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEE----------ECCCH-----HHHHHHHHcCCCEEE--eCCCCCchH-----HHHH
Q ss_pred HHhcCCCeEEEeecCCcC
Q psy12516 210 LTVIPADRLAVHCHDTYG 227 (327)
Q Consensus 210 ~~~~~~~~l~~H~Hn~~g 227 (327)
.+.....-+-.|.+.+.|
T Consensus 115 va~~~~~vVlmH~~~~~~ 132 (279)
T PRK13753 115 IAEADCRLVVMHSAQRDG 132 (279)
T ss_pred HHHcCCCEEEEecCCCCC
No 496
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=74.76 E-value=66 Score=29.12 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=90.8
Q ss_pred cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHH-----HHH------HhhcCChHHHHHHHHHHHHHHHHc--CCeEEE
Q psy12516 88 SGNVATEDLVYMLEGKSMQCGVKEIAVFASASEM-----FSK------RNINCTIEESLERFSEVVSTALTN--GIRVRG 154 (327)
Q Consensus 88 ~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~-----~~~------~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~ 154 (327)
.|-+++|.....++ ...+.|+|.+.+=.+.||. ..+ .+-|.+.++. .+.++..++. .+.+.
T Consensus 18 aG~P~~~~~~~~~~-~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~----~~~v~~ir~~~~~~plv- 91 (256)
T TIGR00262 18 AGDPTLETSLEIIK-TLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKC----FELLKKVRQKHPNIPIG- 91 (256)
T ss_pred CCCCCHHHHHHHHH-HHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHH----HHHHHHHHhcCCCCCEE-
Confidence 46677777665443 3355688877775555552 111 1224454443 3444544443 44433
Q ss_pred EEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHH
Q psy12516 155 YISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 234 (327)
Q Consensus 155 ~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l 234 (327)
.+++ + .|.- ++ =+.++++.+.++|++.+.+.|- .+++..+++..+++. ++...+=+-.+........+
T Consensus 92 ~m~Y-~-Npi~-~~---G~e~f~~~~~~aGvdgviipDl----p~ee~~~~~~~~~~~--gl~~i~lv~P~T~~eri~~i 159 (256)
T TIGR00262 92 LLTY-Y-NLIF-RK---GVEEFYAKCKEVGVDGVLVADL----PLEESGDLVEAAKKH--GVKPIFLVAPNADDERLKQI 159 (256)
T ss_pred EEEe-c-cHHh-hh---hHHHHHHHHHHcCCCEEEECCC----ChHHHHHHHHHHHHC--CCcEEEEECCCCCHHHHHHH
Confidence 3333 1 1210 11 1346678889999999999995 567788888888875 23444444444444444455
Q ss_pred HHHHhcCceeeeccccCCCCCCCCCCC--CCccHHHHHHHHHh
Q psy12516 235 TAMEFGISVFDSSIAGLGGCPYARGAS--GNVATEDLVYMLEG 275 (327)
Q Consensus 235 ~a~~~G~~~vd~s~~G~G~~p~~~g~~--Gn~~~e~~~~~l~~ 275 (327)
.+...|.-++= |+.|..+ .. =+.++.+.+..+++
T Consensus 160 ~~~~~gfiy~v-s~~G~TG------~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 160 AEKSQGFVYLV-SRAGVTG------ARNRAASALNELVKRLKA 195 (256)
T ss_pred HHhCCCCEEEE-ECCCCCC------CcccCChhHHHHHHHHHh
Confidence 55555555543 3456655 21 23557777777775
No 497
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=74.67 E-value=73 Score=29.58 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecCCCC-----------ccCHHHHHHHHHHHHHhcCCCeEEEeec------CCcCcHHH
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGDTIG-----------VGTPGTMRLMLEDVLTVIPADRLAVHCH------DTYGQALA 231 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~Dt~G-----------~~~P~~~~~~~~~~~~~~~~~~l~~H~H------n~~g~a~a 231 (327)
++..+.+.++++.++|+-.|.|-|.++ +..+++..+.++..++...+.++-+=.- ..+--++.
T Consensus 90 ~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~ 169 (294)
T TIGR02319 90 NAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIR 169 (294)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHH
Confidence 344478889999999999999999863 3466777777777776543322332211 12234566
Q ss_pred HHHHHHHhcCcee
Q psy12516 232 NILTAMEFGISVF 244 (327)
Q Consensus 232 n~l~a~~~G~~~v 244 (327)
-+.+-.++|||.|
T Consensus 170 Ra~aY~eAGAD~i 182 (294)
T TIGR02319 170 RSREYVAAGADCI 182 (294)
T ss_pred HHHHHHHhCCCEE
Confidence 7777788999864
No 498
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.66 E-value=13 Score=34.11 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=49.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+-++++.+.|+|.|-+ | .++|+.+++.++.++ +.+++..=. |....|+-+..+.|++.|-++.-...
T Consensus 200 eea~eA~~~gaD~I~L-D---~~~~e~l~~~v~~~~---~~i~leAsG----GIt~~ni~~~a~tGvD~Isvg~lt~s 266 (277)
T PRK05742 200 DELRQALAAGADIVML-D---ELSLDDMREAVRLTA---GRAKLEASG----GINESTLRVIAETGVDYISIGAMTKD 266 (277)
T ss_pred HHHHHHHHcCCCEEEE-C---CCCHHHHHHHHHHhC---CCCcEEEEC----CCCHHHHHHHHHcCCCEEEEChhhcC
Confidence 4577888999999977 5 678999888887663 234444432 66678888899999999997754433
No 499
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=74.51 E-value=66 Score=29.05 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=41.6
Q ss_pred CCChHHHHHH---HHHHHHcCcCEEEe--cCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHH-HHHhc
Q psy12516 167 AVPPHNVTRV---ATALYKMGCYEISL--GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT-AMEFG 240 (327)
Q Consensus 167 r~~~e~l~~~---~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~-a~~~G 240 (327)
.|+.+++..+ ++.+.++|+|-+.+ =+..|...-+.+.+++... .+.++.||-==|.=-..-.++. .++.|
T Consensus 66 ~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a----~~~~vTFHRAfD~~~d~~~al~~l~~lG 141 (248)
T PRK11572 66 CYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAA----GPLAVTFHRAFDMCANPLNALKQLADLG 141 (248)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh----cCCceEEechhhccCCHHHHHHHHHHcC
Confidence 3455544444 44555677775543 3444444445555554443 3457777765444322233343 55779
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
+++|=+|
T Consensus 142 ~~rILTS 148 (248)
T PRK11572 142 VARILTS 148 (248)
T ss_pred CCEEECC
Confidence 9988775
No 500
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=74.24 E-value=78 Score=29.76 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc-cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHH-Hhc
Q psy12516 163 PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV-GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFG 240 (327)
Q Consensus 163 ~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~-~~G 240 (327)
|-..-.++|++..+++.+.+.|++.|.| |.|- +.-.++.+++..+++. ....|.+ -|.|..++.....+ +||
T Consensus 38 ~~~~~Ls~eei~~~~~~~~~~Gv~kvRl--TGGEPllR~dl~eIi~~l~~~-~~~~isl---TTNG~~L~~~a~~Lk~AG 111 (322)
T COG2896 38 PKEELLSLEEIRRLVRAFAELGVEKVRL--TGGEPLLRKDLDEIIARLARL-GIRDLSL---TTNGVLLARRAADLKEAG 111 (322)
T ss_pred cccccCCHHHHHHHHHHHHHcCcceEEE--eCCCchhhcCHHHHHHHHhhc-ccceEEE---ecchhhHHHHHHHHHHcC
Q ss_pred CceeeeccccCCCCCCCCCC-----CCCccHHHHHHHHHh---CCCC---------CCCChhhHHHHHHHHHH
Q psy12516 241 ISVFDSSIAGLGGCPYARGA-----SGNVATEDLVYMLEG---MGIE---------TGADLTSLLRTGHYICG 296 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~-----~Gn~~~e~~~~~l~~---~g~~---------~~~d~~~l~~~~~~~~~ 296 (327)
.++|..|+--+=. . ++.-.+..|+..++. .|+. .++|...+.++.++...
T Consensus 112 l~rVNVSLDsld~------e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~ 178 (322)
T COG2896 112 LDRVNVSLDSLDP------EKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKE 178 (322)
T ss_pred CcEEEeecccCCH------HHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhh
Done!