RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12516
(327 letters)
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase,
ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB:
3mp3_A* 3mp4_A 3mp5_A*
Length = 298
Score = 362 bits (931), Expect = e-126
Identities = 124/207 (59%), Positives = 156/207 (75%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
+ G KE+ +F +ASE+F+K+NINC+IEES +RF ++ A + I VRGY+SC +GCPY
Sbjct: 90 VAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPY 149
Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD 224
EG + P V V Y MGCYEISLGDTIGVGTPG M+ ML V+ +P LAVHCHD
Sbjct: 150 EGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHD 209
Query: 225 TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADL 284
TYGQALAN L A++ G+SV DSS+AGLGGCPYA+GASGN+ATEDLVYMLEG+GI TG +L
Sbjct: 210 TYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNL 269
Query: 285 TSLLRTGHYICGKLKKPSNSKVAKALP 311
LL G++IC L + ++SKVA+A
Sbjct: 270 QKLLEAGNFICQALNRKTSSKVAQATC 296
Score = 199 bits (510), Expect = 1e-62
Identities = 75/109 (68%), Positives = 86/109 (78%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
+V Y MGCYEISLGDTIGVGTPG M+ ML V+ +P LAVHCHDTYGQALAN
Sbjct: 159 AEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANT 218
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
L A++ G+SV DSS+AGLGGCPYA+GASGN+ATEDLVYMLEG + GV
Sbjct: 219 LMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGV 267
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI,
protein struct initiative, northeast structural genomics
consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Length = 307
Score = 359 bits (925), Expect = e-125
Identities = 96/207 (46%), Positives = 131/207 (63%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
++ G+ E VF SASE +++NIN + ESL +V + A + R Y+S V GCPY
Sbjct: 91 LEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPY 150
Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD 224
E VP V R++ AL++ G E+SLGDTIG P + +LE +L PA+++A+H HD
Sbjct: 151 EKDVPIEQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHD 210
Query: 225 TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADL 284
T G ALAN++TA++ GI+VFD S GLGGCPYA G+SGN ATED+VYMLE M I+T L
Sbjct: 211 TRGTALANMVTALQMGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMDIKTNVKL 270
Query: 285 TSLLRTGHYICGKLKKPSNSKVAKALP 311
LL +I K+ KP S+ +
Sbjct: 271 EKLLSAAKWIEEKMGKPLPSRNLQVFK 297
Score = 198 bits (507), Expect = 4e-62
Identities = 57/109 (52%), Positives = 80/109 (73%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
++++ AL++ G E+SLGDTIG P + +LE +L PA+++A+H HDT G ALAN+
Sbjct: 160 IRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANM 219
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
+TA++ GI+VFD S GLGGCPYA G+SGN ATED+VYMLE ++ V
Sbjct: 220 VTALQMGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMDIKTNV 268
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein
structure initiativ midwest center for structural
genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Length = 302
Score = 357 bits (920), Expect = e-124
Identities = 124/209 (59%), Positives = 160/209 (76%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
++ GVKE+AVFA+ASE FS+RNINC+I++SLERF V+ A + +RVRGYISCV+GCPY
Sbjct: 93 LESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPY 152
Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD 224
+G V P V VA L +MGCYE+SLGDTIGVGT G R ++E V + +P +RLA H HD
Sbjct: 153 DGDVDPRQVAWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHD 212
Query: 225 TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADL 284
TYGQALANI ++ GI+VFDSS+AGLGGCPYA+GA+GNVA+ED++Y+L G+ I TG D+
Sbjct: 213 TYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIHTGVDM 272
Query: 285 TSLLRTGHYICGKLKKPSNSKVAKALPVK 313
+L+ G IC L K + S+ AKAL K
Sbjct: 273 HALVDAGQRICAVLGKSNGSRAAKALLAK 301
Score = 197 bits (504), Expect = 1e-61
Identities = 67/109 (61%), Positives = 85/109 (77%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
VA L +MGCYE+SLGDTIGVGT G R ++E V + +P +RLA H HDTYGQALANI
Sbjct: 162 AWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANI 221
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
++ GI+VFDSS+AGLGGCPYA+GA+GNVA+ED++Y+L G + GV
Sbjct: 222 YASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIHTGV 270
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural
genomics, PSI, protein struct initiative; 2.30A
{Brucella melitensis}
Length = 295
Score = 348 bits (895), Expect = e-121
Identities = 105/206 (50%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
EIAVF SASE FSK NINCTI ES+ER S V+ A+ +G+ +RGY+SCVV CPY
Sbjct: 89 AAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPY 148
Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD 224
+G V P V V L+ +GC+E+SLGDTIG GTP T+ ML+ VL + PA LA H HD
Sbjct: 149 DGPVTPQAVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHD 208
Query: 225 TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADL 284
T G+AL NI ++E G+ VFD+S+ GLGGCP+A GA GNV T +V ML MG ETG DL
Sbjct: 209 TGGRALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGFETGLDL 268
Query: 285 TSLLRTGHYICGKLKKPSNSKVAKAL 310
L G + L++ +
Sbjct: 269 DRLRSAGLFTQ-ALRQDKAALEHHHH 293
Score = 199 bits (509), Expect = 2e-62
Identities = 58/123 (47%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
V L+ +GC+E+SLGDTIG GTP T+ ML+ VL + PA LA H HDT G+AL NI
Sbjct: 158 ASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNI 217
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV-----KEIAVF 115
++E G+ VFD+S+ GLGGCP+A GA GNV T +V ML + G+ + +F
Sbjct: 218 RVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGFETGLDLDRLRSAGLF 277
Query: 116 ASA 118
A
Sbjct: 278 TQA 280
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
SCOP: a.5.7.1 c.1.10.5
Length = 345
Score = 73.1 bits (180), Expect = 8e-15
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 169 PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYG 227
P + + G I + D+ G + +R + V+ + ++ +H H
Sbjct: 147 PAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLS 206
Query: 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSL 287
+AN + A+E G D+S+AG+G GA GN E + + E +G G DL +L
Sbjct: 207 LGVANSIVAVEEGCDRVDASLAGMG-----AGA-GNAPLEVFIAVAERLGWNHGTDLYTL 260
Query: 288 LR 289
+
Sbjct: 261 MD 262
Score = 63.5 bits (155), Expect = 2e-11
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYGQALANI 60
+ + G I + D+ G + +R + V+ + ++ +H H +AN
Sbjct: 153 EQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANS 212
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120
+ A+E G D+S+AG+G GA GN E + + E G + +A +
Sbjct: 213 IVAVEEGCDRVDASLAGMG-----AGA-GNAPLEVFIAVAERLGWNHGTDLYTLMDAADD 266
Query: 121 MFSK 124
+
Sbjct: 267 IVRP 270
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Bacteroides vulgatus atcc 8482}
Length = 320
Score = 69.7 bits (171), Expect = 9e-14
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 9/124 (7%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
+ D+ G TP ++ +L++V + H HD L N
Sbjct: 146 FLSKLKAIDKIADLFCMVDSFGGITPKEVKNLLKEVRKYTHVP-VGFHGHDNLQLGLINS 204
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120
+TA++ GI D++I G+G RGA GN+ E L+ L K V V +
Sbjct: 205 ITAIDDGIDFIDATITGMG-----RGA-GNLKMELLLTYLN-KHHGLNVD-FNVLGNIIT 256
Query: 121 MFSK 124
F+
Sbjct: 257 TFTP 260
Score = 69.3 bits (170), Expect = 1e-13
Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 8/120 (6%)
Query: 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 234
+ D+ G TP ++ +L++V + H HD L N +
Sbjct: 147 LSKLKAIDKIADLFCMVDSFGGITPKEVKNLLKEVRKYTHVP-VGFHGHDNLQLGLINSI 205
Query: 235 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYI 294
TA++ GI D++I G+G RGA GN+ E L+ L D L
Sbjct: 206 TAIDDGIDFIDATITGMG-----RGA-GNLKMELLLTYLNKHH-GLNVDFNVLGNIITTF 258
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein,
transferase, claisen condensatio acid biosynthesis;
2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A*
3mi3_A*
Length = 423
Score = 68.0 bits (167), Expect = 6e-13
Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 20/190 (10%)
Query: 106 QCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE 165
+ GV + V S+ K + + ++ +EV++ + GI VR S E
Sbjct: 121 ETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVR--FSS------E 172
Query: 166 GAV--PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
+ ++ + A+ K+G + + DT+G TP + ++ + V+ D + H H
Sbjct: 173 DSFRSDLVDLLSLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCD-IECHFH 231
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV---YMLEGMGIET 280
+ G A+AN A+E G + D+SI G+G R +G L+ Y+ + I
Sbjct: 232 NDTGMAIANAYCALEAGATHIDTSILGIG----ER--NGITPLGALLARMYVTDREYITH 285
Query: 281 GADLTSLLRT 290
L L
Sbjct: 286 KYKLNQLREL 295
Score = 52.3 bits (126), Expect = 8e-08
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 61
+ A+ K+G + + DT+G TP + ++ + V+ D + H H+ G A+AN
Sbjct: 184 SLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGMAIANAY 242
Query: 62 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV 97
A+E G + D+SI G+G R +G L+
Sbjct: 243 CALEAGATHIDTSILGIG----ER--NGITPLGALL 272
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel,
licmsn, substrate specificity, acyltransferase,
amino-acid biosynthesis; 2.00A {Leptospira interrogans}
PDB: 3blf_A 3bli_A*
Length = 337
Score = 65.3 bits (160), Expect = 4e-12
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 20/190 (10%)
Query: 107 CGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG 166
G K + + S ++ + T +E S V+ A+ +G+++ + E
Sbjct: 108 SGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKIN--VYL------ED 159
Query: 167 AVP-----PHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVH 221
P V + L K I L DT+GV +P ++ ++ P H
Sbjct: 160 WSNGFRNSPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFH 219
Query: 222 CHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGM-GIET 280
H+ Y ++AN L A+ G+ +SI GLG R +GN E LV + +T
Sbjct: 220 GHNDYDLSVANSLQAIRAGVKGLHASINGLG----ER--AGNTPLEALVTTIHDKSNSKT 273
Query: 281 GADLTSLLRT 290
+ ++
Sbjct: 274 NINEIAITEA 283
Score = 50.6 bits (122), Expect = 2e-07
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 61
+ L K I L DT+GV +P ++ ++ P H H+ Y ++AN L
Sbjct: 173 SLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSL 232
Query: 62 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV 97
A+ G+ +SI GLG R +GN E LV
Sbjct: 233 QAIRAGVKGLHASINGLG----ER--AGNTPLEALV 262
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine,
transfera; HET: KCX; 1.90A {Propionibacterium
freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5
PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Length = 539
Score = 64.2 bits (157), Expect = 1e-11
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 27/144 (18%)
Query: 165 EGAV-----PPHNV---TRVATALYKMGCYEISLGDTIGVGTPGTMRLML----EDVLTV 212
+G + P H V ++A L MG I+L D + P ++ +
Sbjct: 161 QGTICYTISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQK 220
Query: 213 IPADRLAVHCHDTYGQALANILTAMEFGISVFD---SSIAGLGGCPYARGASGNVATEDL 269
+ +HCH T G +++ A+E G+ V D SS++ G TE +
Sbjct: 221 TQ---INLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMSLGPGHN---------PTESV 268
Query: 270 VYMLEGMGIETGADLTSLLRTGHY 293
MLEG G T D L + +
Sbjct: 269 AEMLEGTGYTTNLDYDRLHKIRDH 292
Score = 52.3 bits (126), Expect = 1e-07
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 19/116 (16%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLML----EDVLTVIPADRLAVHCHDTYGQA 56
+K+A L MG I+L D + P ++ + + +HCH T G
Sbjct: 178 VKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQ---INLHCHSTTGVT 234
Query: 57 LANILTAMEFGISVFD---SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
+++ A+E G+ V D SS++ G TE + MLEG +
Sbjct: 235 EVSLMKAIEAGVDVVDTAISSMSLGPGHN---------PTESVAEMLEGTGYTTNL 281
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex,
amino-acid BIOS lysine biosynthesis, transferase; HET:
AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A*
3a9i_A*
Length = 382
Score = 63.7 bits (156), Expect = 1e-11
Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 22/192 (11%)
Query: 106 QCGVKEIAVFASASE-MFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
+ GV+ I + S+ + + I +E EV++ V S
Sbjct: 85 ETGVQGIDLLFGTSKYLRAP--HGRDIPRIIEEAKEVIAYIREAAPHVEVRFSA------ 136
Query: 165 EGAV--PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVH 221
E ++ V A+ + L DT+GV TP + ++ +V V+ + H
Sbjct: 137 EDTFRSEEQDLLAVYEAV-APYVDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFH 195
Query: 222 CHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV---YMLEGMGI 278
H+ G A+AN A+E G + D++I G+G R +G + Y L+ +
Sbjct: 196 GHNDTGCAIANAYEAIEAGATHVDTTILGIG----ER--NGITPLGGFLARMYTLQPEYV 249
Query: 279 ETGADLTSLLRT 290
L L
Sbjct: 250 RRKYKLEMLPEL 261
Score = 48.7 bits (117), Expect = 1e-06
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 19 DTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77
DT+GV TP + ++ +V V+ + H H+ G A+AN A+E G + D++I G
Sbjct: 165 DTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILG 224
Query: 78 LGGCPYARGASGNVATEDLV 97
+G R +G +
Sbjct: 225 IG----ER--NGITPLGGFL 238
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 6e-11
Identities = 54/345 (15%), Positives = 105/345 (30%), Gaps = 119/345 (34%)
Query: 6 ALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT----VIPADRLAVHCHDTYGQALANIL 61
+ ++ Y ++ +G TPG +R L+ ++ A +A+ D++ ++
Sbjct: 242 GVIQLAHYVVTA-KLLGF-TPGELRSYLKGATGHSQGLVTA--VAIAETDSWESFFVSVR 297
Query: 62 TAME--FGISVFDSSIAGLGGCPYARG--ASGNVATEDLVYMLEGKSMQCGVKEIAVFAS 117
A+ F I G R A N + + S++
Sbjct: 298 KAITVLFFI-----------GV---RCYEAYPNTSLPPSILE---DSLENN------EGV 334
Query: 118 ASEMFSKRNIN-CTIEESLERF------SEVVSTALTNGIRVRGYISCVVGCPYEGAVPP 170
S M S N+ +++ + + + V +L NG + + VV G PP
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-----NLVVS----G--PP 383
Query: 171 HNVTRVATALYKMGC------YEISLGD---TIG-----VGTP-------GTMRLMLEDV 209
++ + L K I + V +P L+ +D+
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 210 LTV---IPADRLAVHCHDTY-GQAL----ANIL---------------TAMEFGIS---V 243
+ A + + +DT+ G L +I T +F +
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 244 FD-SSIAGLGGCPYARGASGNVATEDLVY-MLEGMGIET--GADL 284
F +GLG L + +G G+ L
Sbjct: 504 FGPGGASGLG---------------VLTHRNKDGTGVRVIVAGTL 533
Score = 51.2 bits (122), Expect = 3e-07
Identities = 58/350 (16%), Positives = 101/350 (28%), Gaps = 131/350 (37%)
Query: 22 GVGTPGTMRLMLEDVLTVIPA-----DRLAVHCHDTYGQALANILT------AMEFGISV 70
G G M D+ A +R H DTYG ++ +I+ + FG
Sbjct: 1625 GSQEQG----MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG--- 1677
Query: 71 FDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCT 130
G G E+ M+ + +K +F +E + T
Sbjct: 1678 ---------------GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS----YT 1718
Query: 131 IEESLERFSE---------VVSTALTNGIRVRGYI---SCVVGCPYEGAVPPHNVTRVAT 178
S ++ A ++ +G I + G H
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG---------H------- 1762
Query: 179 ALYKMGCYEISLGD------TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALAN 232
SLG+ V + +E ++ V+ R G +
Sbjct: 1763 ----------SLGEYAALASLADV-------MSIESLVEVV-FYR---------GMTMQV 1795
Query: 233 ILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLL---- 288
+ E G S + + + P AS + E L Y++E +G TG L+
Sbjct: 1796 AVPRDELGRS--NYGMIAIN--PGRVAASFS--QEALQYVVERVGKRTG----WLVEIVN 1845
Query: 289 ---RTGHYICG----------------KLKKPSNSKVAKALPVKETSKTL 319
Y+ KL+K ++ K+L ++E L
Sbjct: 1846 YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 42.7 bits (100), Expect = 1e-04
Identities = 43/295 (14%), Positives = 86/295 (29%), Gaps = 108/295 (36%)
Query: 56 ALANILTAMEFGI-SVFDSSIAGLGGCPYARGASGNVAT--EDL--VYMLEGKSMQCGVK 110
AL + + ++F GG GN E+L +Y ++ V
Sbjct: 144 ALFRAVGEGNAQLVAIF-------GG-------QGNTDDYFEELRDLY----QTYHVLVG 185
Query: 111 EIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPP 170
++ ++E L R + T G+ + ++ P
Sbjct: 186 DL--IKFSAETL----------SELIRTTLDAEKVFTQGLNILEWLE------NPSNTPD 227
Query: 171 HNVTRVATA--------LYKMGCYEISLGDTIGVGTPGTMRLML-------EDVLT-VIP 214
+ + + + ++ Y ++ +G TPG +R L + ++T V
Sbjct: 228 KDY--LLSIPISCPLIGVIQLAHYVVTA-KLLGF-TPGELRSYLKGATGHSQGLVTAVAI 283
Query: 215 A--------DRLA-----------VHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCP 255
A V C++ Y T++ S+ + S+ G P
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPN------TSLP--PSILEDSLENNEGVP 335
Query: 256 YARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKAL 310
S ML I + + + L P+ +V +L
Sbjct: 336 -----S---------PML---SI-SNLTQEQVQDYVNKTNSHL--PAGKQVEISL 370
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 61.2 bits (149), Expect = 2e-10
Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 169 PPHNV---TRVATALYKMGCYEISLGDTIGVGTPGTMRLM---LEDVLTVIPADRLAVHC 222
+++ +A L + G + + + D G+ P ++ L D +P L +H
Sbjct: 256 TKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLP---LHIHT 312
Query: 223 HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA 282
HDT G +A +L + G V D + + G + + LV G ++T
Sbjct: 313 HDTSGAGVAAMLACAQAGADVVDVAADSMSGM------TSQPSMGALVACTRGTPLDTEV 366
Query: 283 DLTSLLRTGHY 293
+ + Y
Sbjct: 367 PMERVFDYSEY 377
Score = 50.4 bits (121), Expect = 5e-07
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLM---LEDVLTVIPADRLAVHCHDTYGQAL 57
M +A L + G + + + D G+ P ++ L D +P L +H HDT G +
Sbjct: 264 MGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLP---LHIHTHDTSGAGV 320
Query: 58 ANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
A +L + G V D + + G + + LV G + V
Sbjct: 321 AAMLACAQAGADVVDVAADSMSGM------TSQPSMGALVACTRGTPLDTEV 366
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase
structure, B enzymes, Zn2+ binding site, TIM-barrel
fold, lyase; 1.70A {Vibrio cholerae}
Length = 464
Score = 59.9 bits (146), Expect = 3e-10
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 27/143 (18%)
Query: 165 EGAV-----PPHNV---TRVATALYKMGCYEISLGDTIGVGTPGTMRLM---LEDVLTVI 213
+G + P HN+ VA L ++G I+L D G+ TP + L+ + +
Sbjct: 144 QGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVD-V 202
Query: 214 PADRLAVHCHDTYGQALANILTAMEFGISVFD---SSIAGLGGCPYARGASGNVATEDLV 270
L +HCH T G A +L A+E G+ D SS++G G P ATE LV
Sbjct: 203 E---LHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSMSGTYGHP---------ATESLV 250
Query: 271 YMLEGMGIETGADLTSLLRTGHY 293
L+G G +TG D+ L + Y
Sbjct: 251 ATLQGTGYDTGLDIAKLEQIAAY 273
Score = 48.3 bits (116), Expect = 2e-06
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLM---LEDVLTVIPADRLAVHCHDTYGQAL 57
+ VA L ++G I+L D G+ TP + L+ + + L +HCH T G A
Sbjct: 161 VDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVD-VE---LHLHCHSTAGLAD 216
Query: 58 ANILTAMEFGISVFD---SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
+L A+E G+ D SS++G G P ATE LV L+G G+
Sbjct: 217 MTLLKAIEAGVDRVDTAISSMSGTYGHP---------ATESLVATLQGTGYDTGL 262
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM
barrel, catalytic domain, dimer, leucine biosynthesis,
ketoisovalerate; 1.95A {Neisseria meningitidis}
Length = 370
Score = 51.0 bits (123), Expect = 2e-07
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALA 231
+ A+ + G I++ DT+G P +++ P + + HCH+ G A+A
Sbjct: 161 EICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVA 220
Query: 232 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML----EGMGIETGADLTSL 287
N L A++ G + ++ GLG R +GN + E++V L + G+ETG D T +
Sbjct: 221 NSLAALKGGARQVECTVNGLG----ER--AGNASVEEIVMALKVRHDLFGLETGIDTTQI 274
Query: 288 LRT 290
+ +
Sbjct: 275 VPS 277
Score = 44.1 bits (105), Expect = 3e-05
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 15 ISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALANILTAMEFGISVF 71
I++ DT+G P +++ P + + HCH+ G A+AN L A++ G
Sbjct: 174 INIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQV 233
Query: 72 DSSIAGLGGCPYARGASGNVATEDLV 97
+ ++ GLG R +GN + E++V
Sbjct: 234 ECTVNGLG----ER--AGNASVEEIV 253
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural
genomics, protein structure initiative; 2.78A {Cytophaga
hutchinsonii atcc 33406}
Length = 325
Score = 50.6 bits (122), Expect = 2e-07
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 188 ISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALANILTAMEFGISVF 244
+++ DT G P ++ ++ + D+ L+ HCH+ G A AN L A++ G
Sbjct: 168 VNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQV 227
Query: 245 DSSIAGLGGCPYARGASGNVATEDLVYML----EGMGIETGADLTSLLRT 290
+ +I G+G R +GN A E++V + E +G+ETG + L+
Sbjct: 228 ECTINGIG----ER--AGNTALEEVVMAMECHKETLGLETGINHKKLVPI 271
Score = 43.6 bits (104), Expect = 4e-05
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 15 ISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALANILTAMEFGISVF 71
+++ DT G P ++ ++ + D+ L+ HCH+ G A AN L A++ G
Sbjct: 168 VNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQV 227
Query: 72 DSSIAGLGGCPYARGASGNVATEDLV 97
+ +I G+G R +GN A E++V
Sbjct: 228 ECTINGIG----ER--AGNTALEEVV 247
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown
function, amino-acid biosynthesis; 2.10A {Listeria
monocytogenes str}
Length = 293
Score = 50.2 bits (121), Expect = 3e-07
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 13/123 (10%)
Query: 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALA 231
G I++ DT+G P + +D+ I D A HCHD G A A
Sbjct: 154 EAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATA 213
Query: 232 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML----EGMGIETGADLTSL 287
N L A+E G + +I G+G R +GN A E++ L + ET L
Sbjct: 214 NALAAIENGARRVEGTINGIG----ER--AGNTALEEVAVALHIRKDFYQAETNIVLNQF 267
Query: 288 LRT 290
+
Sbjct: 268 KNS 270
Score = 43.2 bits (103), Expect = 6e-05
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALA 58
+ G I++ DT+G P + +D+ I D A HCHD G A A
Sbjct: 154 EAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATA 213
Query: 59 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV 97
N L A+E G + +I G+G R +GN A E++
Sbjct: 214 NALAAIENGARRVEGTINGIG----ER--AGNTALEEVA 246
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 48.9 bits (117), Expect = 1e-06
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 234
+A L K G + I++ D G+ P + +L L + H HDT G A A +L
Sbjct: 713 NLAVELEKAGAHIIAVKDMAGLLKPAAAK-VLFKALREATGLPIHFHTHDTSGIAAATVL 771
Query: 235 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHY 293
A+E G+ D+++ L G ++ G +V L G + G D + R Y
Sbjct: 772 AAVEAGVDAVDAAMDALSGN-TSQPCLG-----SIVEALSGSERDPGLDPAWIRRISFY 824
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 48.1 bits (115), Expect = 3e-06
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 234
++A L + G + +++ D G+ P ++ L + +H HDT G L
Sbjct: 696 KLAKELEREGFHILAIKDMAGLLKPKAAYELIG-ELKSAVDLPIHLHTHDTSGNGLLTYK 754
Query: 235 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHY 293
A++ G+ + D+++A + G ++ ++ + L Y L G D+ + HY
Sbjct: 755 QAIDAGVDIIDTAVASMSGL-TSQPSANS-----LYYALNGFPRHLRTDIEGMESLSHY 807
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 42.5 bits (100), Expect = 1e-04
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 188 ISLGDTIGVGTPGTMRLMLEDVLTVIPAD---RLAVHCHDTYGQALANILTAMEFGISVF 244
+L T+ + TP +E + + L++H H+ G A+A G
Sbjct: 249 FNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRI 308
Query: 245 DSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRT 290
+ + G G R GNV L L G++ D +++
Sbjct: 309 EGCLFGNG----ERT--GNVCLVTLGLNLFSRGVDPQIDFSNIDEI 348
Score = 31.7 bits (72), Expect = 0.36
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 15 ISLGDTIGVGTPGTMRLMLEDVLTVIPAD---RLAVHCHDTYGQALANILTAMEFGISVF 71
+L T+ + TP +E + + L++H H+ G A+A G
Sbjct: 249 FNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRI 308
Query: 72 DSSIAGLGGCPYARGASGNVATEDLV 97
+ + G G R GNV L
Sbjct: 309 EGCLFGNG----ERT--GNVCLVTLG 328
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.008
Identities = 52/406 (12%), Positives = 99/406 (24%), Gaps = 156/406 (38%)
Query: 27 GTMRLMLEDVLTV-IPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYAR 85
G + +D+L+V A C D +IL+ E I
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEI------DHIIMSK------ 58
Query: 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA 145
T L + L K + F +EE L + + +
Sbjct: 59 --DAVSGTLRLFWTLLSKQ-----------EEMVQKF--------VEEVLRINYKFLMSP 97
Query: 146 LTN-----GIRVRGYISCV-----VGCPYEGAVPPHNVTR------VATALYK------- 182
+ + R YI + +NV+R + AL +
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVF----AKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 183 ----M-GC-----------------------YEISLGDTIGVGTPGTMRLMLEDVLTVI- 213
+ G + ++L + +P T+ ML+ +L I
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETVLEMLQKLLYQID 210
Query: 214 --------PADRLAVHCHDT------------YGQAL--------ANILTAMEFG----- 240
+ + + H Y L A A
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 241 ----ISVFDSSIAGLGGCPYARGASGNVATEDLVYML---EGMGI------ETGADLTSL 287
V D L + +++ + L E + DL
Sbjct: 271 TTRFKQVTDF----LSA-----ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 288 LRTGH----YICGKLKK--PSNSKVAKALPVKETSKTLE-SYANFD 326
+ T + I + + + K + + + +E S +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 34.0 bits (78), Expect = 0.071
Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 21/151 (13%)
Query: 106 QCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE 165
Q +E+ + + R IN S+ RF + V+ + VR + +E
Sbjct: 572 QVDSRELDIILKQID----RKINTAYVSSMGRFFDAVAALI----GVRKEVL------FE 617
Query: 166 GAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT 225
G + + + YEI D + +R + ED + ++ H+T
Sbjct: 618 GQ-AAMELESLMAESEEYYEYEILKEDRYVIDPELILRQIYEDYMKGFEKSYISAKFHNT 676
Query: 226 YGQALANILT--AMEFGISVFDSSIAGLGGC 254
++ E GI+ + GG
Sbjct: 677 VVNFTYDLANLIRKETGINK----VVLSGGS 703
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.27
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 103 KSMQCGVKEIAVFA--SASEMFSKRNINCTIE 132
K +Q +K ++A SA + I T+E
Sbjct: 23 KKLQASLK---LYADDSAPAL----AIKATME 47
Score = 29.1 bits (64), Expect = 1.2
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 14/37 (37%)
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKALPVKETSKTLE 320
L + L KL +S A AL +K T+E
Sbjct: 25 LQASL--------KLYAD-DS--APALAIK---ATME 47
>3l09_A Putative transcriptional regulator; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
transcription regulator; 2.81A {Jannaschia SP}
Length = 266
Score = 28.1 bits (62), Expect = 3.4
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 256 YARGASGNVATEDLVYMLEGMGIETGADLTSLLR 289
+R V+ L +E MG++ A +L R
Sbjct: 35 VSRDGVIEVSGVALSSFVERMGLQPQAMRVALHR 68
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition,
immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo
sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H*
2qsc_H*
Length = 248
Score = 27.9 bits (63), Expect = 3.9
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 286 SLLRTGHYICGKLKKPSNSKVAKALPVKETSKTLE 320
S L T YIC KPSN+KV K + K K LE
Sbjct: 210 SSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLE 244
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing
antibody, immun anti-WEST NIle virus; 1.43A {Homo
sapiens} PDB: 3iyw_H 3qeh_A 3u0t_D 3c08_H 3lmj_H 3lqa_H*
3c09_H* 3pp4_H 3pp3_H 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H
3jwd_H* 3jwo_H* 3t2n_H 3qot_H 3ma9_H 3nfs_H 3nfp_A ...
Length = 230
Score = 27.0 bits (61), Expect = 7.4
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 286 SLLRTGHYICGKLKKPSNSKVAKALPVKETSKT 318
S L T YIC KPSN+KV K + K KT
Sbjct: 197 SSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.397
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,022,671
Number of extensions: 315789
Number of successful extensions: 871
Number of sequences better than 10.0: 1
Number of HSP's gapped: 849
Number of HSP's successfully gapped: 50
Length of query: 327
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 233
Effective length of database: 4,077,219
Effective search space: 949992027
Effective search space used: 949992027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)