RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12516
         (327 letters)



>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
           domain {Propionibacterium freudenreichii shermanii
           [TaxId: 1752]}
          Length = 303

 Score = 96.9 bits (240), Expect = 9e-24
 Identities = 38/198 (19%), Positives = 76/198 (38%), Gaps = 15/198 (7%)

Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
           M    + +  +   ++    R ++ + E  ++ F    +      +          G   
Sbjct: 87  MLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHA 146

Query: 165 EGAV--------PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVL-TVIPA 215
           +G +              ++A  L  MG   I+L D   +  P     +++ +  T    
Sbjct: 147 QGTICYTISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQK 206

Query: 216 DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275
            ++ +HCH T G    +++ A+E G+ V D++I+ +   P      G+  TE +  MLEG
Sbjct: 207 TQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMSLGP------GHNPTESVAEMLEG 260

Query: 276 MGIETGADLTSLLRTGHY 293
            G  T  D   L +   +
Sbjct: 261 TGYTTNLDYDRLHKIRDH 278



 Score = 71.5 bits (174), Expect = 1e-14
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 1   MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVL-TVIPADRLAVHCHDTYGQALAN 59
           +K+A  L  MG   I+L D   +  P     +++ +  T     ++ +HCH T G    +
Sbjct: 164 VKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVS 223

Query: 60  ILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASAS 119
           ++ A+E G+ V D++I+ +   P      G+  TE +  MLEG      +    +     
Sbjct: 224 LMKAIEAGVDVVDTAISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRLHK-IR 276

Query: 120 EMFSK 124
           + F  
Sbjct: 277 DHFKA 281


>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA,
           catalytic domain {Mycobacterium tuberculosis [TaxId:
           1773]}
          Length = 310

 Score = 91.2 bits (225), Expect = 1e-21
 Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 9/193 (4%)

Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
           +        +        ++  +     +   +  E  +       R         G   
Sbjct: 106 VHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTEL 165

Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLA---VH 221
           E A    +      A         +L  T+ + TP      +E +   +         +H
Sbjct: 166 EYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLH 225

Query: 222 CHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281
            H+  G A+A        G    +  + G G        +GNV    L   L   G++  
Sbjct: 226 PHNDRGTAVAAAELGFAAGADRIEGCLFGNGE------RTGNVCLVTLGLNLFSRGVDPQ 279

Query: 282 ADLTSLLRTGHYI 294
            D +++      +
Sbjct: 280 IDFSNIDEIRRTV 292



 Score = 58.8 bits (141), Expect = 2e-10
 Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 10/127 (7%)

Query: 1   MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLA---VHCHDTYGQAL 57
           +    A         +L  T+ + TP      +E +   +         +H H+  G A+
Sbjct: 175 VGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAV 234

Query: 58  ANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFAS 117
           A        G    +  + G G        +GNV    L   L  + +   +    +   
Sbjct: 235 AAAELGFAAGADRIEGCLFGNGE------RTGNVCLVTLGLNLFSRGVDPQIDFSNI-DE 287

Query: 118 ASEMFSK 124
                  
Sbjct: 288 IRRTVEY 294


>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG,
           catalytic domain {Pseudomonas sp. [TaxId: 306]}
          Length = 289

 Score = 73.9 bits (180), Expect = 1e-15
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 13/197 (6%)

Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
           +  G+  +    +A +  ++     T     +   + +  A   G+   G+         
Sbjct: 88  LLPGIGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGF------LMM 141

Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRL-AVHCH 223
              +P   +      +   G   I + D+ G  +   +R  +     V+  +    +H H
Sbjct: 142 SHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAH 201

Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
                 +AN + A+E G    D+S+AG+G         GN   E  + + E +G   G D
Sbjct: 202 HNLSLGVANSIVAVEEGCDRVDASLAGMGAGA------GNAPLEVFIAVAERLGWNHGTD 255

Query: 284 LTSLLRTGHYICGKLKK 300
           L +L+     I   L+ 
Sbjct: 256 LYTLMDAADDIVRPLQD 272



 Score = 53.1 bits (126), Expect = 1e-08
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 7/125 (5%)

Query: 1   MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRL-AVHCHDTYGQALAN 59
            +    +   G   I + D+ G  +   +R  +     V+  +    +H H      +AN
Sbjct: 151 AEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVAN 210

Query: 60  ILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASAS 119
            + A+E G    D+S+AG+G         GN   E  + + E      G     +  +A 
Sbjct: 211 SIVAVEEGCDRVDASLAGMGAGA------GNAPLEVFIAVAERLGWNHGTDLYTLMDAAD 264

Query: 120 EMFSK 124
           ++   
Sbjct: 265 DIVRP 269


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,180,208
Number of extensions: 52954
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 10
Length of query: 327
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 241
Effective length of database: 1,226,816
Effective search space: 295662656
Effective search space used: 295662656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)