BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12517
         (1286 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W4T|A Chain A, X-Ray Crystallographic Structure Of Pseudomonas Aeruginosa
           Arylamine N-Acetyltransferase
          Length = 299

 Score = 31.6 bits (70), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 350 KLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF--REDQADEYSSLKKEL 401
           +L  A+GL  +     E ++++LR +EE +D +Q  F  R D A E  +L + L
Sbjct: 240 RLTLADGLFGQRAGNGETLQRQLRDVEELLDILQTRFRLRLDPASEVPALARRL 293


>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
            Intermediate Complex
 pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
            Intermediate Complex
          Length = 240

 Score = 30.8 bits (68), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 1116 LDDSRNLKDRITGIFKK-SGSTSRANSVDDLKAVITSLEQQISCMEDELSESRLETSRLK 1174
            L+D + LKDR+   +K+ S     A +++ LK+    +   +S   DE+ ++ L+ S+L 
Sbjct: 87   LEDRKGLKDRLMSAYKELSAYPDAAETLEKLKSA-GYIVAILSNGNDEMLQAALKASKLD 145

Query: 1175 TELVSEKSAAEIKLSELTSKVNELEEDRL 1203
              L S  SA ++K+ +   ++ +   DRL
Sbjct: 146  RVLDSCLSADDLKIYKPDPRIYQFACDRL 174


>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
 pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
          Length = 240

 Score = 30.8 bits (68), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 1116 LDDSRNLKDRITGIFKK-SGSTSRANSVDDLKAVITSLEQQISCMEDELSESRLETSRLK 1174
            L+D + LKDR+   +K+ S     A +++ LK+    +   +S   DE+ ++ L+ S+L 
Sbjct: 87   LEDRKGLKDRLMSAYKELSAYPDAAETLEKLKSA-GYIVAILSNGNDEMLQAALKASKLD 145

Query: 1175 TELVSEKSAAEIKLSELTSKVNELEEDRL 1203
              L S  SA ++K+ +   ++ +   DRL
Sbjct: 146  RVLDSCLSADDLKIYKPDPRIYQFACDRL 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.124    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,234,399
Number of Sequences: 62578
Number of extensions: 946126
Number of successful extensions: 3193
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 3059
Number of HSP's gapped (non-prelim): 172
length of query: 1286
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1176
effective length of database: 8,089,757
effective search space: 9513554232
effective search space used: 9513554232
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)