Query psy12517
Match_columns 1286
No_of_seqs 246 out of 284
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 21:19:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161|consensus 100.0 5.1E-56 1.1E-60 564.0 57.4 478 290-835 1396-1918(1930)
2 PF01576 Myosin_tail_1: Myosin 100.0 1.8E-58 4E-63 565.5 0.7 520 246-834 288-859 (859)
3 KOG4787|consensus 100.0 1.9E-49 4.2E-54 451.2 27.0 469 1-588 1-598 (852)
4 TIGR02169 SMC_prok_A chromosom 99.9 2E-15 4.3E-20 188.9 75.5 91 893-987 950-1046(1164)
5 COG1196 Smc Chromosome segrega 99.9 7.6E-15 1.7E-19 187.3 74.8 222 725-988 802-1039(1163)
6 TIGR02168 SMC_prok_B chromosom 99.8 9E-14 2E-18 173.4 68.2 80 897-986 968-1060(1179)
7 KOG0161|consensus 99.8 4.5E-13 9.8E-18 174.3 75.3 473 297-830 1009-1519(1930)
8 KOG4787|consensus 99.7 2E-15 4.2E-20 175.0 21.8 481 292-831 6-544 (852)
9 PF01576 Myosin_tail_1: Myosin 99.7 5.7E-18 1.2E-22 209.9 0.0 190 611-811 438-643 (859)
10 TIGR02168 SMC_prok_B chromosom 99.6 4.2E-08 9.2E-13 123.3 75.0 38 899-938 963-1004(1179)
11 KOG4674|consensus 99.6 2.7E-08 5.8E-13 129.4 72.3 452 248-743 328-885 (1822)
12 PRK02224 chromosome segregatio 99.5 2.9E-08 6.3E-13 123.8 67.0 149 398-588 299-447 (880)
13 PRK02224 chromosome segregatio 99.5 1.4E-08 3E-13 126.6 57.9 264 398-721 362-643 (880)
14 TIGR02169 SMC_prok_A chromosom 99.5 1.6E-07 3.5E-12 118.8 66.8 29 246-274 180-208 (1164)
15 TIGR00606 rad50 rad50. This fa 99.5 5.8E-07 1.3E-11 117.4 72.1 166 246-439 196-366 (1311)
16 TIGR00606 rad50 rad50. This fa 99.5 9.1E-07 2E-11 115.7 73.1 108 701-811 802-915 (1311)
17 KOG0996|consensus 99.4 6.9E-08 1.5E-12 120.6 56.4 86 899-987 1076-1167(1293)
18 KOG4674|consensus 99.4 7.5E-06 1.6E-10 107.5 74.5 386 747-1252 1116-1521(1822)
19 KOG0933|consensus 99.4 8.6E-07 1.9E-11 109.8 61.0 90 895-987 959-1055(1174)
20 COG1196 Smc Chromosome segrega 99.4 5E-06 1.1E-10 107.8 69.9 139 921-1076 885-1040(1163)
21 PRK03918 chromosome segregatio 99.4 1.4E-06 3E-11 108.8 62.1 83 345-432 196-278 (880)
22 PF10174 Cast: RIM-binding pro 99.3 2.4E-05 5.3E-10 97.6 64.2 243 556-811 228-499 (775)
23 PRK03918 chromosome segregatio 99.2 4.8E-05 1.1E-09 95.2 67.2 81 244-332 156-238 (880)
24 KOG0964|consensus 99.2 5.7E-05 1.2E-09 94.1 63.3 115 873-990 922-1048(1200)
25 KOG0996|consensus 99.2 3.6E-05 7.8E-10 97.3 59.1 58 681-738 789-849 (1293)
26 PF12128 DUF3584: Protein of u 99.1 0.00028 6.1E-09 92.4 75.0 235 243-480 223-499 (1201)
27 KOG0018|consensus 99.1 6.2E-05 1.3E-09 94.7 56.6 260 680-981 714-1016(1141)
28 PF10174 Cast: RIM-binding pro 99.1 0.00023 5E-09 89.2 62.9 50 781-834 552-601 (775)
29 PRK04778 septation ring format 98.9 2E-06 4.4E-11 104.0 32.2 235 702-973 253-521 (569)
30 PF12128 DUF3584: Protein of u 98.8 0.0025 5.4E-08 83.8 66.7 86 722-811 770-857 (1201)
31 PRK01156 chromosome segregatio 98.6 0.0069 1.5E-07 77.0 63.8 24 246-269 162-185 (895)
32 PF07888 CALCOCO1: Calcium bin 98.6 0.0015 3.3E-08 79.0 43.2 19 678-696 379-397 (546)
33 PF05483 SCP-1: Synaptonemal c 98.4 0.018 3.9E-07 70.9 52.3 434 340-825 174-663 (786)
34 PRK01156 chromosome segregatio 98.3 0.03 6.5E-07 71.4 63.7 38 345-382 207-244 (895)
35 KOG0976|consensus 98.3 0.03 6.6E-07 69.6 52.2 75 235-332 82-158 (1265)
36 PF05557 MAD: Mitotic checkpoi 98.2 2.9E-06 6.3E-11 105.1 9.1 106 798-913 503-625 (722)
37 KOG0994|consensus 98.2 0.044 9.5E-07 70.4 43.6 83 729-811 1597-1681(1758)
38 KOG0964|consensus 98.2 0.066 1.4E-06 68.2 53.2 116 400-534 212-333 (1200)
39 KOG0612|consensus 98.1 0.012 2.7E-07 75.8 38.3 80 367-476 462-541 (1317)
40 KOG4643|consensus 98.1 0.045 9.8E-07 69.7 42.4 248 560-834 265-555 (1195)
41 PF00261 Tropomyosin: Tropomyo 98.1 0.00074 1.6E-08 73.9 24.6 221 555-811 4-231 (237)
42 PF07888 CALCOCO1: Calcium bin 98.1 0.065 1.4E-06 65.5 41.8 43 398-440 149-191 (546)
43 PF09726 Macoilin: Transmembra 98.1 0.026 5.6E-07 70.9 39.0 79 247-334 422-500 (697)
44 PF05701 WEMBL: Weak chloropla 98.0 0.082 1.8E-06 64.5 60.1 200 244-473 28-234 (522)
45 PRK04863 mukB cell division pr 98.0 0.18 3.9E-06 68.2 65.3 82 729-810 785-877 (1486)
46 PF00038 Filament: Intermediat 98.0 0.055 1.2E-06 60.8 37.8 35 553-588 104-138 (312)
47 PRK04863 mukB cell division pr 98.0 0.22 4.7E-06 67.4 65.9 99 728-830 892-999 (1486)
48 PF05557 MAD: Mitotic checkpoi 97.9 9.5E-05 2.1E-09 92.0 14.9 36 681-716 500-535 (722)
49 PF13514 AAA_27: AAA domain 97.9 0.21 4.6E-06 65.8 66.1 196 237-440 174-387 (1111)
50 PF00038 Filament: Intermediat 97.9 0.075 1.6E-06 59.7 35.5 83 388-482 53-135 (312)
51 PF00261 Tropomyosin: Tropomyo 97.9 0.018 4E-07 63.2 29.2 140 246-386 11-157 (237)
52 KOG0971|consensus 97.8 0.23 5E-06 63.1 48.2 124 246-382 227-358 (1243)
53 KOG0994|consensus 97.8 0.29 6.2E-06 63.5 42.5 52 779-834 1691-1742(1758)
54 KOG0976|consensus 97.8 0.26 5.5E-06 62.0 46.7 71 679-756 293-370 (1265)
55 KOG0978|consensus 97.7 0.3 6.5E-06 61.4 57.2 146 678-834 469-619 (698)
56 PF05701 WEMBL: Weak chloropla 97.7 0.27 5.9E-06 60.1 43.9 134 678-811 282-427 (522)
57 PF13514 AAA_27: AAA domain 97.6 0.56 1.2E-05 61.9 71.0 93 290-382 170-275 (1111)
58 PF09726 Macoilin: Transmembra 97.6 0.0018 3.8E-08 80.9 18.7 52 553-608 426-480 (697)
59 KOG4643|consensus 97.6 0.49 1.1E-05 60.9 47.3 76 237-328 162-239 (1195)
60 KOG0250|consensus 97.6 0.56 1.2E-05 61.0 56.3 63 676-738 660-725 (1074)
61 PF06160 EzrA: Septation ring 97.6 0.27 5.8E-06 60.6 35.9 110 921-1056 373-487 (560)
62 PF05622 HOOK: HOOK protein; 97.6 1.7E-05 3.7E-10 98.3 0.0 272 342-658 246-528 (713)
63 PF15070 GOLGA2L5: Putative go 97.6 0.25 5.4E-06 61.7 35.3 87 725-811 409-497 (617)
64 COG0419 SbcC ATPase involved i 97.5 0.66 1.4E-05 60.0 64.0 136 299-439 272-408 (908)
65 KOG0612|consensus 97.5 0.76 1.7E-05 60.4 61.8 83 678-769 729-811 (1317)
66 KOG0977|consensus 97.4 0.59 1.3E-05 57.6 37.9 125 349-483 92-216 (546)
67 KOG0978|consensus 97.4 0.69 1.5E-05 58.3 45.2 46 228-273 136-190 (698)
68 PF11365 DUF3166: Protein of u 97.4 0.00017 3.6E-09 70.0 5.1 42 567-609 2-43 (96)
69 KOG4673|consensus 97.4 0.68 1.5E-05 57.7 57.4 130 498-640 602-759 (961)
70 PRK04778 septation ring format 97.4 0.67 1.5E-05 57.2 46.4 64 264-329 29-103 (569)
71 KOG0977|consensus 97.4 0.19 4.2E-06 61.6 30.7 171 559-754 42-228 (546)
72 PRK11637 AmiB activator; Provi 97.4 0.11 2.3E-06 61.6 28.1 86 294-385 47-132 (428)
73 PRK11637 AmiB activator; Provi 97.3 0.11 2.3E-06 61.7 27.1 84 297-386 43-126 (428)
74 KOG0971|consensus 97.2 1.3 2.9E-05 56.7 48.0 153 299-468 229-386 (1243)
75 PF07111 HCR: Alpha helical co 97.2 1.3 2.8E-05 55.7 47.9 48 707-761 573-620 (739)
76 PF09755 DUF2046: Uncharacteri 97.0 0.59 1.3E-05 54.1 28.3 167 246-417 30-203 (310)
77 PHA02562 46 endonuclease subun 97.0 0.44 9.6E-06 57.5 28.4 158 294-465 213-394 (562)
78 PF05483 SCP-1: Synaptonemal c 96.9 2.3 5E-05 53.5 59.4 245 554-833 407-685 (786)
79 COG0419 SbcC ATPase involved i 96.8 3.2 6.9E-05 54.0 64.2 31 244-274 165-195 (908)
80 PF15070 GOLGA2L5: Putative go 96.8 2.7 5.9E-05 52.9 45.2 66 369-438 3-68 (617)
81 PF05622 HOOK: HOOK protein; 96.7 0.00084 1.8E-08 83.7 2.8 84 356-439 193-279 (713)
82 PHA02562 46 endonuclease subun 96.6 0.25 5.3E-06 59.6 22.7 54 398-460 350-403 (562)
83 PF09730 BicD: Microtubule-ass 96.6 3.6 7.7E-05 52.6 53.2 167 569-769 256-437 (717)
84 KOG0963|consensus 96.6 3.5 7.5E-05 51.5 41.5 372 405-890 65-441 (629)
85 PF14915 CCDC144C: CCDC144C pr 96.6 2.2 4.8E-05 49.3 30.2 162 247-438 3-176 (305)
86 KOG2991|consensus 96.5 0.28 6.1E-06 55.2 20.0 183 248-479 106-293 (330)
87 KOG1029|consensus 96.3 3.1 6.7E-05 52.9 28.7 46 1011-1056 568-614 (1118)
88 KOG0980|consensus 96.2 5 0.00011 51.8 30.7 177 244-459 327-503 (980)
89 KOG1029|consensus 96.2 5.9 0.00013 50.6 30.3 27 614-640 487-513 (1118)
90 PF12718 Tropomyosin_1: Tropom 96.1 0.46 9.9E-06 49.3 18.1 109 702-834 18-126 (143)
91 KOG0018|consensus 95.9 9.5 0.00021 50.4 48.8 68 349-417 220-287 (1141)
92 TIGR01843 type_I_hlyD type I s 95.8 0.92 2E-05 52.3 20.7 29 244-272 75-103 (423)
93 PF13851 GAS: Growth-arrest sp 95.7 1.7 3.7E-05 47.4 21.1 141 250-432 27-169 (201)
94 KOG4593|consensus 95.7 9.5 0.00021 48.4 56.9 93 294-386 101-195 (716)
95 PF06160 EzrA: Septation ring 95.6 8.7 0.00019 47.8 52.8 171 772-981 374-549 (560)
96 PF12718 Tropomyosin_1: Tropom 95.6 1.1 2.5E-05 46.5 18.5 43 398-440 93-135 (143)
97 PF09755 DUF2046: Uncharacteri 95.4 7.2 0.00016 45.6 28.2 64 366-436 109-172 (310)
98 PF09789 DUF2353: Uncharacteri 95.4 3 6.5E-05 48.8 22.6 191 296-521 11-216 (319)
99 PF05667 DUF812: Protein of un 95.3 3.7 8.1E-05 51.5 24.5 75 361-439 399-473 (594)
100 PF15254 CCDC14: Coiled-coil d 95.3 13 0.00029 47.7 31.2 151 303-476 389-555 (861)
101 TIGR03185 DNA_S_dndD DNA sulfu 95.1 7.6 0.00016 48.9 26.9 43 678-720 210-252 (650)
102 COG1579 Zn-ribbon protein, pos 95.1 5.3 0.00011 45.1 22.7 84 392-480 89-172 (239)
103 KOG1003|consensus 95.1 4.2 9.1E-05 44.8 21.1 132 679-810 62-198 (205)
104 PF04849 HAP1_N: HAP1 N-termin 95.0 3.7 8.1E-05 47.7 21.7 130 294-440 160-289 (306)
105 PF07111 HCR: Alpha helical co 95.0 15 0.00033 46.8 49.3 154 722-908 330-485 (739)
106 KOG0963|consensus 95.0 14 0.00031 46.4 37.0 256 553-834 67-335 (629)
107 KOG4673|consensus 94.9 15 0.00033 46.6 61.8 115 348-481 408-533 (961)
108 PF15619 Lebercilin: Ciliary p 94.7 8.3 0.00018 42.2 22.7 43 395-440 142-184 (194)
109 KOG0933|consensus 94.6 22 0.00049 46.9 65.6 41 246-286 254-294 (1174)
110 PRK09039 hypothetical protein; 94.2 11 0.00023 44.5 23.5 35 295-329 47-81 (343)
111 PRK09039 hypothetical protein; 94.1 6.8 0.00015 46.1 21.7 56 398-462 129-184 (343)
112 PF12325 TMF_TATA_bd: TATA ele 94.1 1.7 3.6E-05 44.4 14.6 101 286-386 8-112 (120)
113 TIGR01843 type_I_hlyD type I s 94.1 9.8 0.00021 44.1 22.9 24 252-275 76-99 (423)
114 PF05667 DUF812: Protein of un 94.1 22 0.00048 44.9 28.7 117 677-811 394-525 (594)
115 COG1579 Zn-ribbon protein, pos 93.9 14 0.00029 42.0 22.3 88 299-386 50-140 (239)
116 PF09730 BicD: Microtubule-ass 93.7 29 0.00064 44.8 43.6 198 450-692 265-462 (717)
117 KOG0995|consensus 93.6 26 0.00056 44.0 36.6 93 309-426 267-359 (581)
118 COG4942 Membrane-bound metallo 93.2 20 0.00044 43.5 23.6 38 603-640 207-244 (420)
119 KOG0946|consensus 93.0 15 0.00033 47.4 22.9 60 600-659 811-875 (970)
120 KOG0250|consensus 92.4 52 0.0011 44.1 55.5 137 247-386 225-367 (1074)
121 COG1340 Uncharacterized archae 92.3 27 0.00059 40.7 26.7 116 296-416 8-124 (294)
122 TIGR03007 pepcterm_ChnLen poly 92.0 28 0.00061 42.1 23.2 110 367-477 251-382 (498)
123 PF14915 CCDC144C: CCDC144C pr 91.9 31 0.00067 40.4 30.2 203 628-840 19-245 (305)
124 PF13870 DUF4201: Domain of un 91.7 21 0.00045 37.9 21.4 129 249-385 5-134 (177)
125 PF04849 HAP1_N: HAP1 N-termin 91.5 12 0.00025 43.9 18.3 110 248-386 172-285 (306)
126 TIGR01000 bacteriocin_acc bact 91.3 13 0.00028 44.8 19.4 33 244-276 91-123 (457)
127 TIGR03007 pepcterm_ChnLen poly 90.9 40 0.00086 40.9 22.9 74 248-322 159-232 (498)
128 KOG0982|consensus 90.8 47 0.001 40.6 26.8 112 337-464 306-417 (502)
129 PF14073 Cep57_CLD: Centrosome 90.8 29 0.00062 38.0 20.1 78 303-380 6-95 (178)
130 PRK10929 putative mechanosensi 90.8 78 0.0017 43.0 30.8 84 722-811 214-299 (1109)
131 PF10473 CENP-F_leu_zip: Leuci 90.5 26 0.00056 37.0 19.9 63 361-431 43-105 (140)
132 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.4 23 0.0005 36.2 18.0 38 294-331 10-47 (132)
133 KOG0962|consensus 90.3 88 0.0019 42.9 59.9 88 678-765 582-673 (1294)
134 PF08317 Spc7: Spc7 kinetochor 90.2 43 0.00093 39.1 27.1 102 338-439 152-256 (325)
135 PF04012 PspA_IM30: PspA/IM30 90.1 32 0.00069 37.5 19.7 105 696-811 21-132 (221)
136 KOG0980|consensus 90.1 77 0.0017 41.8 33.6 12 50-61 117-128 (980)
137 PF08614 ATG16: Autophagy prot 89.6 2.3 5E-05 45.7 10.2 98 289-386 62-160 (194)
138 PF04111 APG6: Autophagy prote 89.6 6 0.00013 46.0 14.0 122 304-440 12-133 (314)
139 COG2433 Uncharacterized conser 89.5 5.3 0.00011 50.0 14.0 86 343-433 423-508 (652)
140 PF15290 Syntaphilin: Golgi-lo 89.2 7.8 0.00017 44.7 14.1 97 313-419 66-169 (305)
141 PRK11281 hypothetical protein; 89.2 1E+02 0.0022 42.0 30.8 85 722-811 233-319 (1113)
142 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.8 30 0.00065 35.4 18.8 74 391-476 58-131 (132)
143 PF08614 ATG16: Autophagy prot 88.7 6.5 0.00014 42.4 12.7 111 247-379 71-181 (194)
144 PF15397 DUF4618: Domain of un 88.0 57 0.0012 37.6 21.8 114 616-740 9-137 (258)
145 PF00769 ERM: Ezrin/radixin/mo 87.9 17 0.00036 41.1 15.7 108 704-811 4-116 (246)
146 PF08317 Spc7: Spc7 kinetochor 87.8 62 0.0013 37.8 25.0 41 398-438 229-269 (325)
147 COG1340 Uncharacterized archae 87.5 66 0.0014 37.8 26.5 75 344-426 174-248 (294)
148 PRK10698 phage shock protein P 87.5 31 0.00067 38.4 17.2 148 680-832 34-217 (222)
149 KOG4360|consensus 87.3 84 0.0018 39.4 21.6 139 296-461 161-300 (596)
150 TIGR01005 eps_transp_fam exopo 87.3 1E+02 0.0022 39.7 25.3 62 412-479 344-405 (754)
151 PF10473 CENP-F_leu_zip: Leuci 87.2 43 0.00094 35.4 19.6 40 347-386 22-61 (140)
152 KOG1853|consensus 86.8 66 0.0014 37.1 23.1 80 349-432 52-131 (333)
153 COG2433 Uncharacterized conser 86.7 11 0.00023 47.4 14.2 88 343-438 416-506 (652)
154 COG4942 Membrane-bound metallo 86.6 89 0.0019 38.4 25.1 44 389-432 193-236 (420)
155 PF04111 APG6: Autophagy prote 86.5 11 0.00023 44.0 13.5 80 339-426 54-133 (314)
156 PF09728 Taxilin: Myosin-like 86.2 76 0.0016 37.2 30.3 91 678-768 58-152 (309)
157 TIGR03017 EpsF chain length de 86.2 82 0.0018 37.5 21.2 43 702-744 258-303 (444)
158 PF04156 IncA: IncA protein; 85.8 33 0.00072 36.4 15.8 29 295-323 82-110 (191)
159 PF12325 TMF_TATA_bd: TATA ele 85.8 22 0.00049 36.5 13.8 44 339-382 72-115 (120)
160 PF05384 DegS: Sensor protein 85.6 47 0.001 35.7 16.7 126 610-744 24-154 (159)
161 PF13851 GAS: Growth-arrest sp 85.1 65 0.0014 35.5 20.0 78 355-437 54-131 (201)
162 TIGR01005 eps_transp_fam exopo 85.1 48 0.001 42.5 19.5 46 780-829 355-403 (754)
163 PRK10361 DNA recombination pro 84.9 87 0.0019 39.0 20.6 108 723-834 74-197 (475)
164 PF00769 ERM: Ezrin/radixin/mo 84.1 58 0.0012 36.9 17.5 68 352-427 57-124 (246)
165 PF09304 Cortex-I_coil: Cortex 84.1 43 0.00093 34.1 14.5 64 347-418 42-105 (107)
166 COG4913 Uncharacterized protei 84.0 1.5E+02 0.0033 38.7 23.2 85 678-762 638-737 (1104)
167 PF06008 Laminin_I: Laminin Do 84.0 81 0.0018 35.6 24.9 13 336-348 128-140 (264)
168 KOG0999|consensus 83.9 1.3E+02 0.0029 38.0 42.0 90 297-386 46-144 (772)
169 PF05010 TACC: Transforming ac 83.4 82 0.0018 35.3 24.6 79 247-330 6-91 (207)
170 PF09787 Golgin_A5: Golgin sub 82.8 1.3E+02 0.0029 37.3 32.5 36 401-436 276-311 (511)
171 PF14073 Cep57_CLD: Centrosome 82.3 84 0.0018 34.6 17.5 146 259-433 6-154 (178)
172 KOG1003|consensus 82.0 92 0.002 34.8 25.3 114 345-479 84-201 (205)
173 KOG1853|consensus 81.8 25 0.00054 40.4 13.2 84 549-640 27-118 (333)
174 COG4026 Uncharacterized protei 81.6 8.2 0.00018 43.4 9.4 75 354-429 133-207 (290)
175 PF15619 Lebercilin: Ciliary p 81.6 91 0.002 34.4 25.8 92 295-386 13-105 (194)
176 KOG0946|consensus 81.0 2E+02 0.0044 38.0 22.2 129 290-426 733-861 (970)
177 PF10481 CENP-F_N: Cenp-F N-te 80.3 66 0.0014 37.5 16.0 76 388-472 56-131 (307)
178 PF03148 Tektin: Tektin family 79.8 1.5E+02 0.0032 35.7 36.8 107 398-521 63-173 (384)
179 TIGR02680 conserved hypothetic 79.3 2.8E+02 0.0061 38.7 60.0 40 292-331 274-313 (1353)
180 KOG0962|consensus 79.2 2.8E+02 0.006 38.6 64.9 33 1004-1036 932-964 (1294)
181 TIGR03185 DNA_S_dndD DNA sulfu 79.1 1.9E+02 0.0042 36.8 38.6 107 317-441 184-290 (650)
182 PF09728 Taxilin: Myosin-like 78.9 1.4E+02 0.0031 35.1 33.1 58 773-834 212-269 (309)
183 KOG0979|consensus 78.1 2.7E+02 0.0058 37.8 54.8 90 893-987 834-931 (1072)
184 PF14662 CCDC155: Coiled-coil 77.9 1.2E+02 0.0027 33.8 24.8 50 337-386 62-111 (193)
185 PF15066 CAGE1: Cancer-associa 77.0 1.6E+02 0.0035 36.7 18.6 57 681-738 321-377 (527)
186 TIGR03017 EpsF chain length de 76.8 1.7E+02 0.0037 34.9 22.7 25 251-275 172-196 (444)
187 PF04949 Transcrip_act: Transc 76.7 72 0.0016 34.3 13.9 58 375-440 82-139 (159)
188 KOG1899|consensus 76.6 1E+02 0.0022 39.4 17.2 147 274-438 88-235 (861)
189 PF06818 Fez1: Fez1; InterPro 76.5 1.4E+02 0.003 33.6 19.4 94 293-386 9-103 (202)
190 KOG0804|consensus 75.9 46 0.001 40.9 13.8 66 678-743 390-455 (493)
191 KOG0979|consensus 75.5 3.1E+02 0.0067 37.2 28.0 69 738-811 249-317 (1072)
192 TIGR00634 recN DNA repair prot 75.3 2.3E+02 0.005 35.6 22.8 11 709-719 305-315 (563)
193 KOG0249|consensus 75.1 22 0.00048 45.5 11.3 85 395-481 38-129 (916)
194 KOG0982|consensus 74.7 2.2E+02 0.0048 35.2 23.5 129 365-514 287-416 (502)
195 COG3883 Uncharacterized protei 73.8 1.8E+02 0.004 33.8 19.1 24 723-746 197-220 (265)
196 TIGR02338 gimC_beta prefoldin, 73.4 61 0.0013 32.2 12.1 86 679-764 5-108 (110)
197 PF08647 BRE1: BRE1 E3 ubiquit 72.9 36 0.00077 33.4 10.1 70 723-792 24-95 (96)
198 KOG4593|consensus 72.8 3E+02 0.0066 35.9 60.2 34 288-321 56-89 (716)
199 PF05278 PEARLI-4: Arabidopsis 72.7 1.1E+02 0.0023 35.7 15.2 100 310-417 161-260 (269)
200 COG4372 Uncharacterized protei 72.6 2.4E+02 0.0052 34.6 29.1 138 252-419 76-213 (499)
201 PF10186 Atg14: UV radiation r 72.5 1.7E+02 0.0036 32.7 18.0 84 303-386 22-107 (302)
202 PF15066 CAGE1: Cancer-associa 71.5 2.7E+02 0.0059 34.8 23.6 36 297-332 320-355 (527)
203 PF04012 PspA_IM30: PspA/IM30 71.4 1.6E+02 0.0035 32.2 17.7 30 398-427 111-140 (221)
204 PRK10884 SH3 domain-containing 70.8 58 0.0013 36.2 12.3 28 404-431 137-164 (206)
205 smart00787 Spc7 Spc7 kinetocho 70.5 2.3E+02 0.005 33.5 21.9 45 396-440 208-252 (312)
206 COG4026 Uncharacterized protei 70.3 46 0.00099 37.8 11.3 24 290-313 69-92 (290)
207 PRK09343 prefoldin subunit bet 70.2 84 0.0018 32.1 12.4 90 678-767 8-115 (121)
208 PF10212 TTKRSYEDQ: Predicted 70.2 1.6E+02 0.0035 37.1 16.9 29 250-278 302-330 (518)
209 TIGR01010 BexC_CtrB_KpsE polys 70.1 2.3E+02 0.0049 33.3 18.8 59 772-834 244-310 (362)
210 PF10186 Atg14: UV radiation r 69.7 1.9E+02 0.0041 32.2 20.2 37 344-380 72-108 (302)
211 PF07106 TBPIP: Tat binding pr 69.5 51 0.0011 34.8 11.2 40 291-330 69-108 (169)
212 KOG1937|consensus 68.7 3.1E+02 0.0067 34.3 28.9 183 246-439 244-429 (521)
213 PRK10884 SH3 domain-containing 68.1 74 0.0016 35.4 12.5 27 290-316 89-115 (206)
214 PRK03947 prefoldin subunit alp 67.8 1.4E+02 0.003 30.6 13.5 35 295-329 7-41 (140)
215 PF14992 TMCO5: TMCO5 family 67.8 1.4E+02 0.0031 35.0 14.9 104 693-806 72-182 (280)
216 PF07106 TBPIP: Tat binding pr 67.5 29 0.00063 36.6 8.9 66 349-420 72-137 (169)
217 TIGR02977 phageshock_pspA phag 66.8 2.1E+02 0.0046 31.7 17.1 53 774-830 96-148 (219)
218 PRK10929 putative mechanosensi 66.8 4.9E+02 0.011 35.9 35.5 84 247-331 55-139 (1109)
219 KOG0804|consensus 66.6 1.6E+02 0.0035 36.5 15.5 36 351-386 384-419 (493)
220 PF11932 DUF3450: Protein of u 66.4 86 0.0019 35.2 12.8 51 780-834 38-88 (251)
221 COG1382 GimC Prefoldin, chaper 66.4 1E+02 0.0022 32.0 12.1 44 678-721 7-50 (119)
222 cd00632 Prefoldin_beta Prefold 66.4 1.1E+02 0.0023 30.2 11.9 82 682-763 4-103 (105)
223 PF03915 AIP3: Actin interacti 66.0 1.5E+02 0.0032 36.6 15.3 115 307-440 150-273 (424)
224 PF13870 DUF4201: Domain of un 65.8 1.9E+02 0.0041 30.8 17.8 79 752-834 21-102 (177)
225 TIGR02231 conserved hypothetic 65.5 84 0.0018 38.8 13.6 40 292-331 69-108 (525)
226 PF15035 Rootletin: Ciliary ro 65.0 1.1E+02 0.0023 33.7 12.7 86 301-386 9-111 (182)
227 COG3074 Uncharacterized protei 64.5 63 0.0014 30.9 9.3 53 334-386 17-69 (79)
228 PF04871 Uso1_p115_C: Uso1 / p 64.1 1.9E+02 0.0042 30.3 14.6 36 800-841 79-114 (136)
229 KOG0239|consensus 63.5 3.6E+02 0.0078 35.1 18.8 81 341-433 181-261 (670)
230 COG4372 Uncharacterized protei 62.8 3.7E+02 0.008 33.1 26.2 30 682-711 149-178 (499)
231 PRK09841 cryptic autophosphory 62.8 2.2E+02 0.0047 37.0 16.9 29 451-479 371-399 (726)
232 PF09787 Golgin_A5: Golgin sub 62.7 3.9E+02 0.0085 33.4 30.8 36 351-386 276-311 (511)
233 PF15397 DUF4618: Domain of un 62.1 3.1E+02 0.0067 32.0 20.0 30 357-386 7-36 (258)
234 KOG2991|consensus 61.6 3.2E+02 0.0069 32.0 18.3 90 564-663 113-209 (330)
235 KOG4460|consensus 61.3 2.7E+02 0.0058 35.6 16.2 107 771-913 589-695 (741)
236 PF03962 Mnd1: Mnd1 family; I 60.6 1.6E+02 0.0035 32.2 13.2 37 293-329 61-97 (188)
237 PF06156 DUF972: Protein of un 59.9 42 0.00091 33.9 7.9 54 331-384 4-57 (107)
238 PF06785 UPF0242: Uncharacteri 59.8 2.2E+02 0.0047 34.4 14.5 59 874-936 257-317 (401)
239 PF10168 Nup88: Nuclear pore c 59.8 2.2E+02 0.0049 37.2 16.2 31 395-425 635-665 (717)
240 PF01920 Prefoldin_2: Prefoldi 59.4 1.4E+02 0.0029 28.6 11.1 77 688-764 9-103 (106)
241 TIGR02338 gimC_beta prefoldin, 59.0 2E+02 0.0043 28.7 12.9 39 343-381 68-106 (110)
242 KOG0995|consensus 58.4 5.1E+02 0.011 33.3 41.1 31 297-327 224-254 (581)
243 PRK11519 tyrosine kinase; Prov 58.0 2.8E+02 0.0061 35.9 16.7 27 451-477 371-397 (719)
244 PF10267 Tmemb_cc2: Predicted 57.9 4.4E+02 0.0095 32.4 18.3 100 247-355 216-318 (395)
245 KOG0992|consensus 57.5 5.1E+02 0.011 33.0 31.0 83 684-767 225-307 (613)
246 PF12329 TMF_DNA_bd: TATA elem 56.9 52 0.0011 31.1 7.6 53 678-737 13-68 (74)
247 PF11559 ADIP: Afadin- and alp 56.8 2.5E+02 0.0054 29.2 16.2 26 361-386 50-75 (151)
248 PF14662 CCDC155: Coiled-coil 56.0 3.4E+02 0.0073 30.5 26.6 28 305-332 5-32 (193)
249 KOG0577|consensus 55.4 6.1E+02 0.013 33.3 40.6 53 125-177 357-409 (948)
250 PF10168 Nup88: Nuclear pore c 54.4 6.4E+02 0.014 33.2 25.3 9 451-459 686-694 (717)
251 PF05546 She9_MDM33: She9 / Md 54.2 3.7E+02 0.0081 30.5 15.2 83 695-779 6-98 (207)
252 PF10267 Tmemb_cc2: Predicted 54.2 3.8E+02 0.0082 32.9 15.9 66 344-419 253-318 (395)
253 PF15294 Leu_zip: Leucine zipp 54.0 4E+02 0.0087 31.4 15.4 104 306-425 130-234 (278)
254 PF09738 DUF2051: Double stran 53.5 2E+02 0.0042 34.1 13.1 86 320-427 82-168 (302)
255 PRK10698 phage shock protein P 53.5 3.7E+02 0.008 30.2 17.2 117 696-827 22-145 (222)
256 PF10498 IFT57: Intra-flagella 53.3 3.4E+02 0.0073 32.8 15.2 154 242-421 190-350 (359)
257 TIGR01000 bacteriocin_acc bact 53.3 5E+02 0.011 31.7 20.5 25 415-439 238-262 (457)
258 COG1842 PspA Phage shock prote 53.0 3.9E+02 0.0085 30.4 18.4 35 398-432 112-146 (225)
259 TIGR02977 phageshock_pspA phag 52.2 3.7E+02 0.0081 29.8 19.8 26 302-327 39-64 (219)
260 TIGR02231 conserved hypothetic 51.9 1.3E+02 0.0029 37.1 12.1 35 398-432 137-171 (525)
261 PRK10869 recombination and rep 51.8 6.1E+02 0.013 32.2 21.9 29 453-481 327-358 (553)
262 PRK09841 cryptic autophosphory 51.6 4.5E+02 0.0098 34.2 17.0 22 365-386 341-362 (726)
263 PF13166 AAA_13: AAA domain 51.4 6.3E+02 0.014 32.2 25.2 31 299-332 320-350 (712)
264 PF03148 Tektin: Tektin family 51.0 5.2E+02 0.011 31.2 31.8 84 397-480 249-347 (384)
265 PRK11281 hypothetical protein; 50.8 8.7E+02 0.019 33.7 33.0 24 693-716 430-453 (1113)
266 PF06818 Fez1: Fez1; InterPro 50.4 4.2E+02 0.0091 29.9 19.3 14 251-264 11-24 (202)
267 cd00632 Prefoldin_beta Prefold 50.2 2.6E+02 0.0057 27.5 12.6 35 294-328 6-40 (105)
268 PF02841 GBP_C: Guanylate-bind 50.2 2.2E+02 0.0047 32.9 12.7 13 816-828 284-296 (297)
269 PF08826 DMPK_coil: DMPK coile 50.0 1.6E+02 0.0035 27.4 9.3 34 405-438 10-43 (61)
270 TIGR01010 BexC_CtrB_KpsE polys 49.6 3.6E+02 0.0078 31.7 14.6 16 366-381 245-260 (362)
271 PRK13169 DNA replication intia 49.6 81 0.0018 32.2 8.1 52 331-382 4-55 (110)
272 TIGR00634 recN DNA repair prot 49.3 6.4E+02 0.014 31.8 25.2 78 354-432 264-341 (563)
273 KOG0999|consensus 49.2 7E+02 0.015 32.2 61.2 82 983-1064 649-741 (772)
274 PF04912 Dynamitin: Dynamitin 48.8 3.9E+02 0.0084 32.1 14.9 120 294-418 246-387 (388)
275 PF08826 DMPK_coil: DMPK coile 48.3 1.5E+02 0.0032 27.6 8.7 49 390-438 9-57 (61)
276 PF10481 CENP-F_N: Cenp-F N-te 48.1 5.4E+02 0.012 30.5 19.2 80 301-386 18-97 (307)
277 PF09789 DUF2353: Uncharacteri 47.7 5.7E+02 0.012 30.7 29.8 125 351-479 11-155 (319)
278 KOG2751|consensus 47.6 6.6E+02 0.014 31.4 22.5 126 293-426 135-266 (447)
279 PF06120 Phage_HK97_TLTM: Tail 47.4 5.6E+02 0.012 30.5 23.4 114 702-815 52-172 (301)
280 KOG4360|consensus 46.9 7.3E+02 0.016 31.7 16.9 24 301-324 198-221 (596)
281 COG5185 HEC1 Protein involved 46.8 7.1E+02 0.015 31.6 26.4 252 246-519 267-569 (622)
282 PF14992 TMCO5: TMCO5 family 46.8 3.4E+02 0.0074 32.0 13.4 74 297-370 59-137 (280)
283 PLN03188 kinesin-12 family pro 46.8 1E+03 0.023 33.5 29.5 57 556-627 1201-1257(1320)
284 PRK15422 septal ring assembly 46.7 1.8E+02 0.0039 28.5 9.4 42 345-386 28-69 (79)
285 PF11932 DUF3450: Protein of u 46.4 4.8E+02 0.01 29.4 14.7 42 398-439 62-103 (251)
286 PF13949 ALIX_LYPXL_bnd: ALIX 46.2 4.8E+02 0.01 29.4 19.8 46 923-970 140-185 (296)
287 PF09325 Vps5: Vps5 C terminal 46.2 4.2E+02 0.0092 28.8 19.8 32 246-277 27-58 (236)
288 PF05384 DegS: Sensor protein 45.9 4.3E+02 0.0093 28.7 22.4 116 322-440 6-125 (159)
289 PF09304 Cortex-I_coil: Cortex 45.8 3.6E+02 0.0078 27.8 14.5 18 405-422 57-74 (107)
290 PF05546 She9_MDM33: She9 / Md 45.7 5E+02 0.011 29.5 16.5 89 339-431 43-131 (207)
291 PRK10246 exonuclease subunit S 45.5 9.7E+02 0.021 32.7 69.0 29 294-322 297-325 (1047)
292 PF06810 Phage_GP20: Phage min 44.3 74 0.0016 33.9 7.2 77 1020-1179 13-93 (155)
293 TIGR01069 mutS2 MutS2 family p 44.2 2.4E+02 0.0052 37.1 13.1 39 725-763 517-555 (771)
294 KOG1850|consensus 43.4 6.8E+02 0.015 30.3 28.3 66 777-846 208-273 (391)
295 KOG4302|consensus 42.9 9.2E+02 0.02 31.7 24.6 170 296-479 56-241 (660)
296 PF01486 K-box: K-box region; 42.7 3.3E+02 0.0072 26.6 10.9 33 288-320 6-38 (100)
297 smart00787 Spc7 Spc7 kinetocho 42.3 6.6E+02 0.014 29.9 27.3 18 247-264 74-91 (312)
298 TIGR03752 conj_TIGR03752 integ 42.2 61 0.0013 40.1 7.1 85 231-330 53-138 (472)
299 PTZ00464 SNF-7-like protein; P 41.2 5.7E+02 0.012 28.8 18.2 80 248-330 16-97 (211)
300 PF06120 Phage_HK97_TLTM: Tail 41.1 6.9E+02 0.015 29.8 15.5 103 284-386 64-171 (301)
301 KOG2077|consensus 40.9 8.5E+02 0.018 31.6 16.0 104 285-394 285-388 (832)
302 PF10498 IFT57: Intra-flagella 40.5 3.5E+02 0.0076 32.7 12.7 19 702-720 231-249 (359)
303 KOG4403|consensus 40.5 4.6E+02 0.0099 32.8 13.5 72 349-422 252-325 (575)
304 PF12777 MT: Microtubule-bindi 40.4 1.1E+02 0.0023 36.2 8.5 24 402-425 259-282 (344)
305 PF11559 ADIP: Afadin- and alp 40.3 4.4E+02 0.0096 27.3 17.7 43 344-386 61-103 (151)
306 PF12795 MscS_porin: Mechanose 40.2 5.7E+02 0.012 28.6 21.0 168 296-480 33-208 (240)
307 PF14197 Cep57_CLD_2: Centroso 39.8 3.2E+02 0.0069 25.9 9.8 21 361-381 45-65 (69)
308 PRK11519 tyrosine kinase; Prov 39.7 9.9E+02 0.021 31.2 17.5 9 3-11 8-16 (719)
309 PF05335 DUF745: Protein of un 39.6 5.8E+02 0.013 28.4 14.8 103 723-834 67-169 (188)
310 PRK12704 phosphodiesterase; Pr 39.4 9E+02 0.02 30.6 18.2 16 965-981 452-467 (520)
311 PF15290 Syntaphilin: Golgi-lo 39.3 2.7E+02 0.0058 32.9 11.0 66 703-768 66-134 (305)
312 PF06005 DUF904: Protein of un 39.2 3.5E+02 0.0076 25.8 10.4 24 363-386 39-62 (72)
313 PF15035 Rootletin: Ciliary ro 39.1 5.7E+02 0.012 28.2 13.7 91 293-386 15-125 (182)
314 PF05010 TACC: Transforming ac 38.6 6.3E+02 0.014 28.6 26.8 17 464-480 154-170 (207)
315 PF12329 TMF_DNA_bd: TATA elem 38.5 1.3E+02 0.0029 28.5 7.2 61 751-811 5-67 (74)
316 PF13166 AAA_13: AAA domain 37.6 9.9E+02 0.021 30.5 20.9 36 351-386 419-454 (712)
317 PF15456 Uds1: Up-regulated Du 37.0 4E+02 0.0087 27.8 11.0 90 240-330 8-110 (124)
318 PF15294 Leu_zip: Leucine zipp 37.0 6E+02 0.013 30.0 13.4 66 248-313 130-209 (278)
319 PF07058 Myosin_HC-like: Myosi 36.9 8.3E+02 0.018 29.5 17.7 144 353-521 11-163 (351)
320 PF12709 Kinetocho_Slk19: Cent 36.8 46 0.001 32.8 4.0 35 1004-1038 36-74 (87)
321 PF12761 End3: Actin cytoskele 36.6 2.4E+02 0.0052 31.6 9.8 70 251-330 97-182 (195)
322 PF13094 CENP-Q: CENP-Q, a CEN 36.1 2.2E+02 0.0047 30.0 9.2 25 398-422 61-85 (160)
323 KOG3091|consensus 35.8 9.3E+02 0.02 30.7 15.3 164 780-1008 337-504 (508)
324 PF07889 DUF1664: Protein of u 35.8 3E+02 0.0064 28.9 9.8 70 694-763 50-122 (126)
325 PF07989 Microtub_assoc: Micro 35.6 3.4E+02 0.0073 26.0 9.4 26 306-331 5-30 (75)
326 PF07218 RAP1: Rhoptry-associa 35.6 53 0.0011 41.3 5.1 117 73-225 25-141 (782)
327 COG3883 Uncharacterized protei 35.3 8E+02 0.017 28.8 21.0 41 784-831 158-198 (265)
328 KOG2129|consensus 35.2 1E+03 0.022 29.9 23.4 43 373-415 182-224 (552)
329 PRK15178 Vi polysaccharide exp 35.2 4.4E+02 0.0095 32.8 12.6 103 786-913 225-333 (434)
330 TIGR01069 mutS2 MutS2 family p 34.6 5.2E+02 0.011 34.2 13.9 17 284-300 408-424 (771)
331 PRK00409 recombination and DNA 34.6 4.7E+02 0.01 34.6 13.6 18 697-714 519-536 (782)
332 KOG2751|consensus 34.5 9.2E+02 0.02 30.2 14.8 45 396-440 180-224 (447)
333 PF06248 Zw10: Centromere/kine 34.2 1.1E+03 0.023 30.0 20.1 38 392-430 83-120 (593)
334 cd07623 BAR_SNX1_2 The Bin/Amp 33.9 7.1E+02 0.015 27.8 22.5 41 421-480 150-190 (224)
335 PF09738 DUF2051: Double stran 33.6 7.1E+02 0.015 29.6 13.5 86 295-386 78-163 (302)
336 TIGR02680 conserved hypothetic 33.5 1.6E+03 0.035 31.8 59.3 88 723-811 875-962 (1353)
337 PRK09343 prefoldin subunit bet 33.4 5.5E+02 0.012 26.4 13.8 43 341-383 70-112 (121)
338 PF12777 MT: Microtubule-bindi 33.2 2.2E+02 0.0047 33.7 9.5 43 398-440 241-283 (344)
339 KOG2391|consensus 33.1 2.5E+02 0.0055 33.9 9.8 21 398-418 259-279 (365)
340 PF05529 Bap31: B-cell recepto 32.8 2.6E+02 0.0055 30.2 9.3 34 775-808 159-192 (192)
341 KOG1962|consensus 32.6 4.1E+02 0.0088 30.3 10.9 23 785-807 187-209 (216)
342 PRK14127 cell division protein 32.6 2.1E+02 0.0046 29.3 8.0 9 451-459 93-101 (109)
343 PF09731 Mitofilin: Mitochondr 32.2 1.1E+03 0.024 29.6 22.2 22 892-913 464-485 (582)
344 KOG4005|consensus 32.1 3.6E+02 0.0078 31.3 10.3 54 333-386 88-141 (292)
345 PF13747 DUF4164: Domain of un 31.9 5.1E+02 0.011 25.5 11.7 17 461-477 68-84 (89)
346 PF08581 Tup_N: Tup N-terminal 31.5 3.4E+02 0.0075 26.4 8.8 56 779-834 20-75 (79)
347 PF12795 MscS_porin: Mechanose 31.3 7.9E+02 0.017 27.5 20.1 35 722-758 191-225 (240)
348 PF03962 Mnd1: Mnd1 family; I 30.9 7.6E+02 0.016 27.2 14.2 100 353-480 66-165 (188)
349 COG1258 Predicted pseudouridyl 30.9 19 0.00041 43.3 0.5 31 19-56 178-224 (398)
350 KOG4403|consensus 30.8 1.2E+03 0.026 29.4 17.1 33 293-325 258-290 (575)
351 PF14988 DUF4515: Domain of un 30.8 8.1E+02 0.017 27.5 20.5 40 727-766 82-129 (206)
352 PF07889 DUF1664: Protein of u 30.8 6.6E+02 0.014 26.5 11.9 63 313-381 59-121 (126)
353 KOG1962|consensus 30.7 2.5E+02 0.0054 31.9 8.9 38 349-386 172-209 (216)
354 PF10146 zf-C4H2: Zinc finger- 30.5 8.7E+02 0.019 27.8 15.5 30 398-427 38-67 (230)
355 KOG4603|consensus 30.2 3.4E+02 0.0074 30.2 9.4 70 349-424 79-148 (201)
356 PF01920 Prefoldin_2: Prefoldi 29.9 5E+02 0.011 24.8 11.4 32 296-327 7-38 (106)
357 cd09236 V_AnPalA_UmRIM20_like 29.9 1E+03 0.022 28.4 18.7 28 1030-1057 298-325 (353)
358 PF06428 Sec2p: GDP/GTP exchan 29.8 2.1E+02 0.0046 28.8 7.4 54 685-738 2-59 (100)
359 KOG4809|consensus 29.7 1.3E+03 0.029 29.8 29.5 145 349-521 243-393 (654)
360 PF08657 DASH_Spc34: DASH comp 29.7 2.1E+02 0.0045 33.2 8.3 41 346-386 177-217 (259)
361 PF02994 Transposase_22: L1 tr 29.7 1.5E+02 0.0032 35.6 7.5 27 398-424 164-190 (370)
362 KOG0241|consensus 29.5 2.2E+02 0.0049 38.3 9.2 72 662-740 346-421 (1714)
363 PF14282 FlxA: FlxA-like prote 29.4 1.9E+02 0.0041 29.0 7.1 48 701-748 22-76 (106)
364 PF10046 BLOC1_2: Biogenesis o 29.2 5.7E+02 0.012 25.3 11.8 72 356-439 14-85 (99)
365 KOG0288|consensus 29.1 1.2E+03 0.027 29.1 14.8 10 1086-1095 341-350 (459)
366 PF07200 Mod_r: Modifier of ru 28.7 6.7E+02 0.015 25.9 16.5 112 340-472 32-143 (150)
367 TIGR03319 YmdA_YtgF conserved 28.4 1.3E+03 0.028 29.2 18.4 116 338-476 25-141 (514)
368 PLN02939 transferase, transfer 28.3 1.7E+03 0.038 30.6 30.4 115 306-425 161-283 (977)
369 PF09486 HrpB7: Bacterial type 28.3 8.1E+02 0.018 26.7 16.6 99 339-440 19-120 (158)
370 PRK15422 septal ring assembly 28.3 5.9E+02 0.013 25.1 9.8 38 349-386 11-48 (79)
371 PF06428 Sec2p: GDP/GTP exchan 28.1 50 0.0011 33.1 2.8 61 359-426 4-64 (100)
372 COG1382 GimC Prefoldin, chaper 28.0 7.3E+02 0.016 26.1 13.6 39 294-332 6-44 (119)
373 PF05700 BCAS2: Breast carcino 27.8 9E+02 0.019 27.1 18.3 77 352-439 139-215 (221)
374 PF02403 Seryl_tRNA_N: Seryl-t 27.7 5E+02 0.011 25.4 9.5 35 351-385 31-65 (108)
375 PF03915 AIP3: Actin interacti 27.5 1.3E+03 0.028 28.8 17.5 22 450-471 299-320 (424)
376 TIGR03752 conj_TIGR03752 integ 27.1 5E+02 0.011 32.7 11.3 32 351-382 68-99 (472)
377 PF08172 CASP_C: CASP C termin 27.1 3.4E+02 0.0073 31.3 9.3 31 469-515 4-34 (248)
378 COG4913 Uncharacterized protei 26.7 1.7E+03 0.037 30.0 20.8 152 702-871 620-774 (1104)
379 PF09006 Surfac_D-trimer: Lung 26.5 59 0.0013 28.8 2.6 23 1012-1034 5-27 (46)
380 cd07627 BAR_Vps5p The Bin/Amph 26.3 9.2E+02 0.02 26.7 20.9 161 245-410 6-186 (216)
381 PRK00106 hypothetical protein; 26.0 1.5E+03 0.032 29.1 20.4 130 322-476 33-162 (535)
382 PF10234 Cluap1: Clusterin-ass 25.9 1.1E+03 0.025 27.6 14.5 75 299-386 167-241 (267)
383 PF06785 UPF0242: Uncharacteri 25.8 1.3E+03 0.028 28.3 19.0 27 451-477 202-229 (401)
384 PF02403 Seryl_tRNA_N: Seryl-t 25.7 6.2E+02 0.013 24.8 9.8 71 361-439 27-100 (108)
385 KOG4797|consensus 25.6 90 0.002 32.1 4.0 38 247-286 64-101 (123)
386 PLN02939 transferase, transfer 25.6 1.9E+03 0.042 30.2 26.6 68 678-745 241-315 (977)
387 PF03961 DUF342: Protein of un 25.0 4.3E+02 0.0092 32.3 10.3 123 200-327 267-408 (451)
388 COG5293 Predicted ATPase [Gene 25.0 1.4E+03 0.03 29.1 14.2 118 248-385 340-457 (591)
389 PF10805 DUF2730: Protein of u 24.7 6.1E+02 0.013 25.5 9.6 38 349-386 49-88 (106)
390 PF05911 DUF869: Plant protein 24.6 1.8E+03 0.04 29.6 58.0 102 349-459 190-309 (769)
391 PLN00016 RNA-binding protein; 24.4 44 0.00094 38.9 1.9 37 16-52 331-367 (378)
392 KOG4603|consensus 24.3 7.3E+02 0.016 27.7 10.6 48 359-409 119-169 (201)
393 smart00502 BBC B-Box C-termina 24.3 6.4E+02 0.014 24.2 12.1 87 678-764 1-92 (127)
394 KOG2129|consensus 24.0 1.5E+03 0.033 28.5 20.4 54 592-649 40-95 (552)
395 KOG1899|consensus 24.0 1.8E+03 0.039 29.3 17.1 19 1079-1097 486-504 (861)
396 PF08247 ENOD40: ENOD40 protei 23.9 21 0.00045 23.6 -0.4 7 1219-1225 1-7 (12)
397 PF14257 DUF4349: Domain of un 23.9 2.7E+02 0.0059 31.4 7.9 36 291-326 159-194 (262)
398 TIGR02894 DNA_bind_RsfA transc 23.9 7.6E+02 0.016 27.2 10.6 9 321-329 83-91 (161)
399 PRK06231 F0F1 ATP synthase sub 23.8 1E+03 0.022 26.4 13.2 48 722-769 71-118 (205)
400 PRK14161 heat shock protein Gr 23.8 2.3E+02 0.0051 31.0 7.1 32 409-440 15-46 (178)
401 KOG3647|consensus 23.8 1.3E+03 0.028 27.5 14.4 69 341-417 146-214 (338)
402 PF00170 bZIP_1: bZIP transcri 23.8 5.5E+02 0.012 23.2 9.4 26 355-380 32-57 (64)
403 PF05600 DUF773: Protein of un 23.7 1.3E+03 0.027 29.4 14.1 74 662-741 419-492 (507)
404 PF04912 Dynamitin: Dynamitin 23.1 1.4E+03 0.03 27.6 24.9 18 197-214 51-68 (388)
405 PF10211 Ax_dynein_light: Axon 23.0 1E+03 0.023 26.2 11.9 92 696-787 86-187 (189)
406 PF06810 Phage_GP20: Phage min 22.7 5E+02 0.011 27.8 9.1 45 689-733 18-68 (155)
407 KOG4196|consensus 22.4 1.5E+02 0.0034 31.3 5.1 34 1017-1050 85-118 (135)
408 KOG3453|consensus 22.2 39 0.00085 34.5 0.9 23 10-32 1-24 (110)
409 KOG3564|consensus 21.9 7.2E+02 0.016 31.6 11.1 38 725-762 65-102 (604)
410 PRK11677 hypothetical protein; 21.8 2.4E+02 0.0052 29.8 6.4 30 1036-1066 71-100 (134)
411 PF03904 DUF334: Domain of unk 21.4 1.3E+03 0.028 26.7 14.2 45 288-334 25-69 (230)
412 KOG4571|consensus 20.9 3.1E+02 0.0068 32.4 7.7 38 349-386 248-285 (294)
413 PF02994 Transposase_22: L1 tr 20.9 2.2E+02 0.0048 34.2 6.8 22 555-576 286-307 (370)
414 PF08647 BRE1: BRE1 E3 ubiquit 20.8 8.2E+02 0.018 24.1 13.7 73 294-379 3-75 (96)
415 PF11570 E2R135: Coiled-coil r 20.7 7.7E+02 0.017 26.4 9.5 43 398-440 14-56 (136)
416 cd07652 F-BAR_Rgd1 The F-BAR ( 20.5 1.3E+03 0.027 26.2 13.9 98 693-809 99-197 (234)
417 PF02183 HALZ: Homeobox associ 20.4 3.4E+02 0.0073 23.8 6.0 37 350-386 6-42 (45)
418 cd07623 BAR_SNX1_2 The Bin/Amp 20.3 1.2E+03 0.026 26.0 20.6 32 246-277 15-46 (224)
419 KOG3612|consensus 20.2 1.2E+03 0.027 30.0 12.7 62 17-110 298-359 (588)
420 PRK14474 F0F1 ATP synthase sub 20.2 1.3E+03 0.029 26.4 13.1 77 722-798 28-104 (250)
421 KOG4466|consensus 20.1 1.1E+03 0.024 28.1 11.6 99 620-738 20-131 (291)
422 KOG4677|consensus 20.0 1.9E+03 0.04 28.0 21.4 298 47-417 36-355 (554)
No 1
>KOG0161|consensus
Probab=100.00 E-value=5.1e-56 Score=563.96 Aligned_cols=478 Identities=25% Similarity=0.342 Sum_probs=455.8
Q ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHH---HHHHHH
Q psy12517 290 KTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK------------KSNAAEREAEALR---TKLAAA 354 (1286)
Q Consensus 290 ~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd------------k~eEld~sieELR---TKLlsL 354 (1286)
......+..+++.+++|+++++|+..++...++.+.+|+++++.|+ ...+++.++.++| ++++.+
T Consensus 1396 e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl 1475 (1930)
T KOG0161|consen 1396 EAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKL 1475 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3346677899999999999999999999999999999999999665 6788899999888 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 355 EGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEK 434 (1286)
Q Consensus 355 E~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~ 434 (1286)
.+.++++.+.++.+.++++.+..++.++..++ +++ ||.+|+++|..|.|+.++.+++.+++++|+++++.|+
T Consensus 1476 ~~~lee~~e~~e~l~renk~l~~ei~dl~~~~-----~e~---~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~ 1547 (1930)
T KOG0161|consen 1476 KNALEELLEQLEELRRENKNLSQEIEDLEEQK-----DEG---GKRVHELEKEKRRLEQEKEELQAALEELEAALEAEED 1547 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999 888 9999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCcccHHHHH-HHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHH
Q psy12517 435 KCREVCGGMEGVNKVERI-QALEKEL----KLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKD 509 (1286)
Q Consensus 435 k~lrle~~~~gv~~~~~I-~eLEreL----k~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~~~~a~~~kkKLE~d 509 (1286)
+.++++ +++ +++ .++|++| +.+++.++.|++.|+++++.++.+.++++ .+.+.++||++|
T Consensus 1548 ~~lr~~-----~~~-~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~---------e~~r~KKkle~d 1612 (1930)
T KOG0161|consen 1548 KKLRLQ-----LEL-QQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKS---------EALRSKKKLEGD 1612 (1930)
T ss_pred HHHHHH-----HHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---------HHHhhhhhhhcc
Confidence 999987 676 566 9999999 78889999999999999999999999998 889999999999
Q ss_pred HHHHHHHHHHhcCCCCccccCCCCCCccccchhhhhccCCCCcchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12517 510 LKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSV 589 (1286)
Q Consensus 510 L~ElE~kle~ank~k~ealkql~K~~~~~k~~~~sl~r~gsqe~~k~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~~ 589 (1286)
|++++++++++|+.+.+++++++++ |.+++++|++++++.....|+++|++.+++++ ..
T Consensus 1613 i~elE~~ld~ank~~~d~~K~lkk~----------------q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~----~~- 1671 (1930)
T KOG0161|consen 1613 INELEIQLDHANKANEDAQKQLKKL----------------QAQLKELQRELEDAQRAREELLEQLAEAERRL----AA- 1671 (1930)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-
Confidence 9999999999999999999999999 88999999999999999999999999999998 44
Q ss_pred hccCCCCchHHHHHHHHHHH----------hhhhhHHHHHHHHHhhhhhhhhHHHHHhhhchH--HHHHhHHHHhhhhhh
Q psy12517 590 ARDAFHPNLVQYLQIEKVRA----------ESSTEKTQITGELESLKSKLSALEAEKKKFETD--ILEKSSKITQLEASI 657 (1286)
Q Consensus 590 ~~~~~~~~~~L~~ElekLrs----------~ae~E~~EL~eELesL~sk~ssLe~eKRKLE~d--qLE~eLeE~q~E~e~ 657 (1286)
|++++++|+. +++.++.|+.++++.++++++++...|++|+++ +|++++++.+.++++
T Consensus 1672 ----------l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~ 1741 (1930)
T KOG0161|consen 1672 ----------LQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRA 1741 (1930)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566665544 688899999999999999999999999999999 999999999999999
Q ss_pred hhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh----hhhHHHHHHHHH
Q psy12517 658 REERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM----TKTISDLQTKCS 733 (1286)
Q Consensus 658 ~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a----Kk~I~kLEaRI~ 733 (1286)
+. ||+++|.. ++++++++|..||++++|++++++.||++||||+.+|+++|+.+ |++|++||+||+
T Consensus 1742 ~~--Er~kka~~--------~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir 1811 (1930)
T KOG0161|consen 1742 AE--ERAKKAQA--------DAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIR 1811 (1930)
T ss_pred hH--HHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 99 99999999 99999999999999999999999999999999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 734 TLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITELK-------TQYEQEIKKLEDTLVQERQEYEDLT 804 (1286)
Q Consensus 734 eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~-------KqyKRQlEEaEEea~~~~akyRKLQ 804 (1286)
+||.+|+.|.|++.+++|.+|++||+|+||.+|+++ +|.+++|+++ ++||||++++|+++++++++||++|
T Consensus 1812 ~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q 1891 (1930)
T KOG0161|consen 1812 ELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQ 1891 (1930)
T ss_pred HHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 9999999998 9999999999999999999999999
Q ss_pred hhHhhhhhhhhHHHHHHHHHHHHHHHhhhhh
Q psy12517 805 NRYDILEGEHVDIKASLVKEKENNHGRLQQT 835 (1286)
Q Consensus 805 rELEeae~~~vE~ad~lE~ev~kLrsklr~~ 835 (1286)
|++++++ +++++|++++++||+++|.+
T Consensus 1892 ~ele~a~----erad~~e~~~~~lr~k~r~~ 1918 (1930)
T KOG0161|consen 1892 RELEEAE----ERADTAESELNKLRSKLRST 1918 (1930)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 9999999 99999999999999999993
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=100.00 E-value=1.8e-58 Score=565.54 Aligned_cols=520 Identities=24% Similarity=0.350 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhH-------HHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDI-------LLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKK 318 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~e~eks~i-------llrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk 318 (1286)
.+++.+|..+..+|..++.+.+.---.+.+- |.++|..+.. .-...-+.+..+++.+.+|+++++|+..++.
T Consensus 288 ~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e-~le~~~~~~~~LeK~k~rL~~EleDl~~eLe 366 (859)
T PF01576_consen 288 SELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQE-QLEEANAKVSSLEKTKKRLQGELEDLTSELE 366 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888776533332222 3445544333 3344567789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 319 SLSLRVRELETEAAAFK------------KSNAAEREAEALR---TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQ 383 (1286)
Q Consensus 319 ~L~qrLreLEKKQKkfd------------k~eEld~sieELR---TKLlsLE~alEEL~EeLEELKrE~KELReEmEELr 383 (1286)
..+..+..|+++++.|+ ...+++.+..+++ ++++.+.+.|+++.+.++.++++++.|..++.++.
T Consensus 367 ~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~ 446 (859)
T PF01576_consen 367 KAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLT 446 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccch
Confidence 99999999999999887 3355566666666 99999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHH-HHHHHHH---
Q psy12517 384 DHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERI-QALEKEL--- 459 (1286)
Q Consensus 384 Ds~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I-~eLEreL--- 459 (1286)
+++ +++ |++||+++|.+|.|+.++.+++.+++++|++++..|++++|++ +++ +++ .+|+++|
T Consensus 447 ~q~-----~~~---~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~-----~el-~~~r~e~er~l~eK 512 (859)
T PF01576_consen 447 SQL-----DDA---GKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQ-----VEL-QQLRQEIERELQEK 512 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhh-----hhh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHhh
Confidence 999 999 9999999999999999999999999999999999999999998 777 666 9999999
Q ss_pred -HHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCccc
Q psy12517 460 -KLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVE 538 (1286)
Q Consensus 460 -k~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~~~~a~~~kkKLE~dL~ElE~kle~ank~k~ealkql~K~~~~~ 538 (1286)
+.+++++++++++|++|+..|+.+.++++ .+++.++||+++|++|+++++++|+.+.++.++++++
T Consensus 513 eeE~E~~Rr~~qr~l~~le~~LE~E~k~r~---------~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~---- 579 (859)
T PF01576_consen 513 EEEFEETRRNHQRQLESLEAELEEERKERA---------EALREKKKLESDLNELEIQLDHANRANEEAQKQLKKL---- 579 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHhhHHHHHHHHhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH----
Confidence 78899999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred cchhhhhccCCCCcchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHH---------
Q psy12517 539 KVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRA--------- 609 (1286)
Q Consensus 539 k~~~~sl~r~gsqe~~k~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs--------- 609 (1286)
+.++++++..++++....++++.++..+++++ +. |..+++.++.
T Consensus 580 ------------q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~----~~-----------l~~elee~~~~~~~a~r~r 632 (859)
T PF01576_consen 580 ------------QAQLKDLQRELEEAQRAREELREQLAVSERRL----RA-----------LQAELEELREALEQAERAR 632 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----HH-----------HHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999998 55 5555555543
Q ss_pred -hhhhhHHHHHHHHHhhhhhhhhHHHHHhhhchH--HHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHH
Q psy12517 610 -ESSTEKTQITGELESLKSKLSALEAEKKKFETD--ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREEL 686 (1286)
Q Consensus 610 -~ae~E~~EL~eELesL~sk~ssLe~eKRKLE~d--qLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL 686 (1286)
.++.++.++..+|+.++++++++...+++|+++ +|+.+|+++++++..+. +|+++|+. ++++|+++|
T Consensus 633 k~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~--ek~kka~~--------~~~~l~~eL 702 (859)
T PF01576_consen 633 KQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAE--EKAKKAQA--------QAAQLAEEL 702 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHh--------HHHHHHHHH
Confidence 688899999999999999999999999999999 99999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy12517 687 TQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM----TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINV 762 (1286)
Q Consensus 687 ~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a----Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKE 762 (1286)
..||++++++|++|+.||+|||+|+.||+++|+.+ |++|++||+||++||.+|+.|+|+|..++|.+|++||+|||
T Consensus 703 ~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kE 782 (859)
T PF01576_consen 703 RQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKE 782 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999988 68999999999999999999999999999999999999999
Q ss_pred hhhhccc--chHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhh
Q psy12517 763 LKNQSSD--NVTKQITELK-------TQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQ 833 (1286)
Q Consensus 763 L~~Q~ee--kn~~rlqEl~-------KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr 833 (1286)
|.||+++ +++.+|+|++ |+||||++|||+++++++++||++||+|++++ +++++|++++++||+++|
T Consensus 783 l~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~k~Rk~q~elee~~----e~~~~~e~~l~~lr~~~r 858 (859)
T PF01576_consen 783 LQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLAKYRKLQRELEEAE----ERAEAAERELNKLRAKSR 858 (859)
T ss_dssp ------------------------------------------------SSSSHHHHHT----CCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcC
Confidence 9999998 8899999988 99999999999999999999999999999999 999999999999999987
Q ss_pred h
Q psy12517 834 Q 834 (1286)
Q Consensus 834 ~ 834 (1286)
+
T Consensus 859 ~ 859 (859)
T PF01576_consen 859 S 859 (859)
T ss_dssp T
T ss_pred C
Confidence 4
No 3
>KOG4787|consensus
Probab=100.00 E-value=1.9e-49 Score=451.22 Aligned_cols=469 Identities=16% Similarity=0.150 Sum_probs=338.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhcCCCCCCCCCCCCccccCCCCCCcccccccccccccCCCCCC
Q psy12517 1 MHHIKPTLKGDPLCPLGFHPQVRWPTRCKRCFRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRDYKEHGNRNRD 80 (1286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~d~~~s~p~l~~~~~~~~~~~~~~~~~~~~~ 80 (1286)
|||.|||.+||.|||+|||||.+|||||+|||+||+|||++.- +.-.|+++|.++.+++..-+.||--.-+
T Consensus 1 ~~~~~~S~~~~~L~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~-----~~~~~s~~~~~~~~~ss~~~~~~~~E~~---- 71 (852)
T KOG4787|consen 1 NAEQSESSLINMLEDRLNQAENQIQDYRDENTVLKCELRELQE-----TTFATSDEKLREKIRTTEGLCDELMEEN---- 71 (852)
T ss_pred CcccchhhhhhhhhhcccCchhccchHHHHHHHHHHHHHHhhc-----ccccccCcchHHHhhhhhhHHHHHHHHh----
Confidence 8999999999999999999999999999999999999999993 5677899999999986655555432211
Q ss_pred CCccCCCcCCCCCCCCcccccccchhcccccCCcccccccCCccCCCCCCcCCCCCCCCCCCC------CCCc-c--ccc
Q psy12517 81 NDLRKDDFTVSSPSLSSWTSASTIRESEKKNEGRSWTSSTNLSSVSSSNDSQNSSRRPPPEDS------SNED-D--DYR 151 (1286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~wts~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~-~--~~~ 151 (1286)
.---+|.++||..--+. -.++||.+-+ +.+| | +.+
T Consensus 72 ------------------------------~~~~s~~~~~~~~~~~~------~~~~~~~~~~~~R~~~~~~~~~~~~~~ 115 (852)
T KOG4787|consen 72 ------------------------------EQLKAEVKDLQQEIEEM------QDQYREEEIEEFRELQRELELNAKNCR 115 (852)
T ss_pred ------------------------------hhhhhhccCccccchhh------hhhcChhhHHHHHHHHHHHhhcchhee
Confidence 11245777777654322 3345554321 1122 1 234
Q ss_pred cchheeecccC----------CCCCCCCCCCCCCCCC------------------------------CCCcccccCCCC-
Q psy12517 152 STKYVVRRRTS----------HLPATSTSSSNAEPST------------------------------SSNTTRTRSSAS- 190 (1286)
Q Consensus 152 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~- 190 (1286)
.+.++.|+-|. |.|.+-...+|+.|+. +-+.+|.++.+-
T Consensus 116 ~L~~~~Rr~~~s~D~~E~E~~~s~~~~~~~~~S~~~si~~~i~~~S~~~~~E~~~r~~~~~~~R~~N~~E~s~Er~~~~~ 195 (852)
T KOG4787|consen 116 VLQFKLRKTERSRDQAEAEKMHSEKKLDEYMNSCPEAVAASIKSDSAKVELEYEIRVAKEVSVRLHNELEQTEEKRCKLE 195 (852)
T ss_pred eeccCccccchhhhHHHHHhhcCCcchhccCCCCcchhhHHHhhcchHHHHHHHHHHHHHHHHHHhhhHhhhhhccCcch
Confidence 44444455442 3333322244444411 111222222221
Q ss_pred ---------CCCCCCCCC-----Cccchhh--h-----------------hhhhhh------------------------
Q psy12517 191 ---------PRLKTPDKP-----SKADVDF--I-----------------LQVKDA------------------------ 213 (1286)
Q Consensus 191 ---------~~~~~~~~~-----~~~dv~f--~-----------------~~v~~~------------------------ 213 (1286)
||.-.|+.| ..-|++. . ...+.+
T Consensus 196 ~E~~~~~~~~~~i~~~~~~R~~~~~s~~~~~~~~~~~AA~~P~~~~~~~s~~~~~s~~~~~~Lr~~~~~S~~~~~r~~~~ 275 (852)
T KOG4787|consen 196 DEVFYLKEKVREIQTQNKWREARNKTDIAVKRLSAEIAASVPNIPENEMSKELRDALEREIDLREQMRFSEEDLKRTQIR 275 (852)
T ss_pred hHHHhhhcCCccccCCChhhhhcCCcHHHHHHHHHHHhcCCCCcchhhhhhhhhhhhcccchhHhhhccchhhhhhheee
Confidence 333333322 1112111 0 000000
Q ss_pred ----------------ccccccCCCC-CCCc-cccCcccccccccccc---CChhhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12517 214 ----------------KKTRRKENLE-TDTE-SLAGTETTDTTETTLV---NDNEYSDQIDLLRHELDNMKAKCEKLERE 272 (1286)
Q Consensus 214 ----------------~~~~~~~~~~-~~~~-~~~~~~~t~~t~~t~v---~~~~~~~~i~~lr~el~~~k~rce~~e~e 272 (1286)
++...++++. ..+. +......|.+|-.|.. |.| ++.|+..++.+|..|++|+||||++
T Consensus 276 ~~~~~~~~~~~~rK~s~s~~~r~~~~~s~~~~s~~~~~~~S~~~~~~~~~~D~N-~~~Q~~~~~~~~~~~~Tr~Er~Er~ 354 (852)
T KOG4787|consen 276 LQDVENENEELLKKLSKASKLRPPMIRSARLVTACTCQKVSDITFLMFCRCDGN-AHLQLELAESQVQHLNTKIERLEKT 354 (852)
T ss_pred ccccccccHHHHHHHhhhhcccchhhhhhhhhhhhccccchhHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111122221 1111 1111222223333333 777 9999999999999999999999999
Q ss_pred hhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy12517 273 KSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLA 352 (1286)
Q Consensus 273 ks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLl 352 (1286)
| |||+||+++|||.+++|.++..- .+++++.-..+-...+.+.++.++..++++. +...++.+|.
T Consensus 355 ~-D~L~rri~~~~~~~~R~~~s~A~---~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~-----------~~s~~~r~L~ 419 (852)
T KOG4787|consen 355 N-DHLNKKIVELEADCKRGGVTSAH---SKAGEFKLTPEMEKDMSKMIVTISELERKNL-----------ELTTQVKQLE 419 (852)
T ss_pred h-HHHHHHHHHHhhhhcccchHHHH---HHhhhhhcChHhHhHHHHHHHHHHHHHHhcc-----------cHHHHHHHHh
Confidence 9 99999999999999999988765 6789999999999999999999998888853 4567788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 353 AAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEA 432 (1286)
Q Consensus 353 sLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~ 432 (1286)
+...-|++++........++.+++++|.+|+|.|+++|+..+++|++.|++++|+||||+|+|+|++|+.++.
T Consensus 420 ~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~------- 492 (852)
T KOG4787|consen 420 TKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQVRD------- 492 (852)
T ss_pred hccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHhh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999955442
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHH
Q psy12517 433 EKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKE 512 (1286)
Q Consensus 433 E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~~~~a~~~kkKLE~dL~E 512 (1286)
+..|.+++..|+.||+++++.++++++||.+|+.++-.+. +++
T Consensus 493 ---------~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~-----------------------~~e----- 535 (852)
T KOG4787|consen 493 ---------GEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTID-----------------------EIE----- 535 (852)
T ss_pred ---------hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHh-----------------------HHH-----
Confidence 3467888899999999999999999999999998863331 122
Q ss_pred HHHHHHHhcCCCCccccCCCCCCcc-ccchhhhhccCCCCcchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 513 ATDKLERANGGKPPKLGALPKTPSV-EKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYS 588 (1286)
Q Consensus 513 lE~kle~ank~k~ealkql~K~~~~-~k~~~~sl~r~gsqe~~k~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~ 588 (1286)
+.+..|.+..+. +++.+.+|++||+|.++..+++.+|+..++..+|+.|+.|++.+. .+|..
T Consensus 536 -------------~~~evL~~~~~~t~~l~Kq~L~~~~~q~de~r~s~~~Q~~~~~~~~L~~~~~~~~~E~-q~l~~ 598 (852)
T KOG4787|consen 536 -------------QCCEVLAAVETQTGRLCKQFLKIDHAQKDERRRSLSKQSGAAIIAELANVMQEMKNEH-QKLDK 598 (852)
T ss_pred -------------HHHHHHHHHhhhHHHHHHHHHHhcccCcchHHHHHHhccchhhhhhhhhhHHHHHhhh-hhhcc
Confidence 222223332222 578899999999999999999999999999999999999999998 77664
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.87 E-value=2e-15 Score=188.91 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=84.7
Q ss_pred CCCcHHHHHHHHHHHHHHHhh--cCCccccchhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhcCCcchhhhhhHh
Q psy12517 893 PPTTEESQNRIRRAAFAAKKS--VSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQS 970 (1286)
Q Consensus 893 ~Pd~eev~~rI~rLe~~m~~l--VNM~Ai~Eyd~V~~rl~el~s~r~~~Ls~Ere~IlErIeq~ek~kkd~~sfM~sfea 970 (1286)
.++..++...|..+..++..+ |||.|+.+|+.+..+|..+...++. |......|.+.|..+.+...+ .||.+|+.
T Consensus 950 ~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~d-l~~~~~~l~~~i~~l~~~~~~--~f~~~f~~ 1026 (1164)
T TIGR02169 950 ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK-LEEERKAILERIEEYEKKKRE--VFMEAFEA 1026 (1164)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 456789999999999999888 9999999999999999999999999 999999999999999999999 99999999
Q ss_pred HHH----HHHhhcCCCcccch
Q psy12517 971 IDD----AYENVKYTNYGRRE 987 (1286)
Q Consensus 971 Ink----If~~LS~G~~geLe 987 (1286)
|+. ||..|.+| .|.|.
T Consensus 1027 ~~~~f~~~~~~l~~~-~~~l~ 1046 (1164)
T TIGR02169 1027 INENFNEIFAELSGG-TGELI 1046 (1164)
T ss_pred HHHHHHHHHHHHhCC-eEEEE
Confidence 999 99999944 88774
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.86 E-value=7.6e-15 Score=187.31 Aligned_cols=222 Identities=21% Similarity=0.237 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy12517 725 ISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITELKT-------QYEQEIKKLEDTLVQ 795 (1286)
Q Consensus 725 I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~K-------qyKRQlEEaEEea~~ 795 (1286)
+..++.++..++.++.....+...+...+..++.++.++..++.. .+...++.... .+..++.+++..+..
T Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~ 881 (1163)
T COG1196 802 LEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE 881 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777766666666666666666666666666554 22333333333 333333344444444
Q ss_pred HHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccccCCchhhhhchhhhhHHHHHHH
Q psy12517 796 ERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQR 875 (1286)
Q Consensus 796 ~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~~kg~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 875 (1286)
+...+..+..++.++. .....+..++..++.+... .. .. +.-+.-.
T Consensus 882 ~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~-------l~--------------------~~---~~~~~~~ 927 (1163)
T COG1196 882 LEEEKEELEEELRELE----SELAELKEEIEKLRERLEE-------LE--------------------AK---LERLEVE 927 (1163)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-------HH--------------------HH---HHHHHHH
Confidence 4444444444444444 3333333333333332221 00 00 0001111
Q ss_pred HHHHHHHHHhhcCCCCCCCCcH-HHHHHHHHHHHHHHhh--cCCccccchhhhHHHHhhhhhhhhhhhhhhhhhhHHHHH
Q psy12517 876 LTEVAAELKRASQLPPTPPTTE-ESQNRIRRAAFAAKKS--VSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEE 952 (1286)
Q Consensus 876 l~~~~~~~~~~~~~~~~~Pd~e-ev~~rI~rLe~~m~~l--VNM~Ai~Eyd~V~~rl~el~s~r~~~Ls~Ere~IlErIe 952 (1286)
+.+....+. .+.++... ++..+|..++.++..+ |||.||++|+.+..+|+.+.+++.. |...+..|.+.|.
T Consensus 928 ~~~~~~~~~-----~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~d-l~~a~~~l~~~i~ 1001 (1163)
T COG1196 928 LPELEEELE-----EEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRED-LEEAKEKLLEVIE 1001 (1163)
T ss_pred HHHHHhhhc-----cccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 222221111 11122222 7899999999999888 9999999999999999999999999 9999999999999
Q ss_pred HHhhhcCCcchhhhhhHhHHH----HHHhhcCCCcccchh
Q psy12517 953 NIWKMTDDNDSSLTSFQSIDD----AYENVKYTNYGRRET 988 (1286)
Q Consensus 953 q~ek~kkd~~sfM~sfeaInk----If~~LS~G~~geLe~ 988 (1286)
.+.+...+ .||++|+.||. ||..|.+|++|+|.-
T Consensus 1002 ~~d~~~~~--~f~~~f~~In~~F~~if~~L~~GG~a~L~l 1039 (1163)
T COG1196 1002 ELDKEKRE--RFKETFDKINENFSEIFKELFGGGTAELEL 1039 (1163)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCCCeeEEEe
Confidence 99999999 99999999999 999999987998753
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.81 E-value=9e-14 Score=173.39 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhh--cCCccccchhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhcCCcchh---hhhhHhH
Q psy12517 897 EESQNRIRRAAFAAKKS--VSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSS---LTSFQSI 971 (1286)
Q Consensus 897 eev~~rI~rLe~~m~~l--VNM~Ai~Eyd~V~~rl~el~s~r~~~Ls~Ere~IlErIeq~ek~kkd~~sf---M~sfeaI 971 (1286)
..++.+|..|+.++..+ |||.|+..|+.+..++.+|...++. +...|..|.+.-+. .| +++|+.|
T Consensus 968 ~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~--------L~~~i~~i~~~~~~--~f~~~~~~F~~v 1037 (1179)
T TIGR02168 968 EEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKED--------LTEAKETLEEAIEE--IDREARERFKDT 1037 (1179)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 45555566666555544 5555555555555555555555554 54555555555444 45 5555555
Q ss_pred HH--------HHHhhcCCCcccc
Q psy12517 972 DD--------AYENVKYTNYGRR 986 (1286)
Q Consensus 972 nk--------If~~LS~G~~geL 986 (1286)
|. +|..|.+|+.+.|
T Consensus 1038 ~~~f~~~F~~lf~~~~~~~~~~~ 1060 (1179)
T TIGR02168 1038 FDQVNENFQRVFPKLFGGGEAEL 1060 (1179)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEE
Confidence 54 7777777645554
No 7
>KOG0161|consensus
Probab=99.81 E-value=4.5e-13 Score=174.34 Aligned_cols=473 Identities=17% Similarity=0.200 Sum_probs=252.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 297 LKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK---------------KSNAAEREAEALRTKLAAAEGLCEEL 361 (1286)
Q Consensus 297 ekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd---------------k~eEld~sieELRTKLlsLE~alEEL 361 (1286)
..+.+..+.|.+.+++++..+..-+....++++..+++. ...+++........++..+...+++.
T Consensus 1009 ~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e 1088 (1930)
T KOG0161|consen 1009 KSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDE 1088 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334444444444444444444444444444443333221 22233333333334444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12517 362 MDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCG 441 (1286)
Q Consensus 362 ~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~ 441 (1286)
...+..+.+.+++|...+.++.+.+ ..- +.....++|..+-|...+..+...+++..+...........-+
T Consensus 1089 ~~~~~~l~k~i~eL~~~i~el~e~l-----e~e---r~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e- 1159 (1930)
T KOG0161|consen 1089 QAEVAQLQKQIKELEARIKELEEEL-----EAE---RASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKRE- 1159 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-
Confidence 5555555555555555555555444 222 4444555555555555555555555554222222211111110
Q ss_pred CCCcccHHHHH-HHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q psy12517 442 GMEGVNKVERI-QALEKEL----KLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDK 516 (1286)
Q Consensus 442 ~~~gv~~~~~I-~eLEreL----k~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~~~~a~~~kkKLE~dL~ElE~k 516 (1286)
..++.+ +.||.+. ....++++.+...|.++.+.++...+.+. .....+..|+.++.++...
T Consensus 1160 -----~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~---------~lekek~~lq~e~~~l~~e 1225 (1930)
T KOG0161|consen 1160 -----AEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKA---------KLEKEKSDLQREIADLAAE 1225 (1930)
T ss_pred -----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 011222 3333333 44456778888888888887765544333 3445566677777777777
Q ss_pred HHHhcCCCCccccCCCCCCccccchhhhhccCCCCcchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC
Q psy12517 517 LERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHP 596 (1286)
Q Consensus 517 le~ank~k~ealkql~K~~~~~k~~~~sl~r~gsqe~~k~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~ 596 (1286)
+++....+....+..+.+ -.++.+++..+++......|+-.|..-.-.++ . ++...
T Consensus 1226 v~~~~~~k~~~e~~~k~~----------------E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~-~-------~l~~~ 1281 (1930)
T KOG0161|consen 1226 LEQLSSEKKDLEKKDKKL----------------EAQLSELQLKLDEQERLRNDLTAKRSRLQNEN-E-------ELSRQ 1281 (1930)
T ss_pred HHHHhhhhccHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-H-------HHhhH
Confidence 776665554443322111 23556666666655555555444443333333 1 11111
Q ss_pred chHHHHHHH---HHHHhhhhhHHHHHHHHHhhhhhhhhHHHHHhhhchH--HHHHhHHHHhhhhhhhhhhhhhhhhHhhh
Q psy12517 597 NLVQYLQIE---KVRAESSTEKTQITGELESLKSKLSALEAEKKKFETD--ILEKSSKITQLEASIREERERATDLSVKA 671 (1286)
Q Consensus 597 ~~~L~~Ele---kLrs~ae~E~~EL~eELesL~sk~ssLe~eKRKLE~d--qLE~eLeE~q~E~e~~~~~ER~kKa~~~~ 671 (1286)
.+..++.+. +..+....++.+++.++...+....+|....+.+..+ .|...+++.+....... ..++++..
T Consensus 1282 lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~--r~lsk~~~-- 1357 (1930)
T KOG0161|consen 1282 LEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELE--RKLSKANA-- 1357 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--
Confidence 122222222 2222455577888888888888999999999999877 88999999888888777 67777766
Q ss_pred cchhhhhHHHHHHHHHHHHHH-HHHhHHHHHhHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 672 GSAASRELNQLREELTQLKKE-AQRNAEKVTKLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKA 747 (1286)
Q Consensus 672 ~~~~e~q~~qL~eEL~~Eqe~-~QklE~~rk~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~ 747 (1286)
++.+-.......... ..-++..++.|...+-+++..+..+.+.+ .++...|...+..+-.+++.-..-.+
T Consensus 1358 ------e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~ 1431 (1930)
T KOG0161|consen 1358 ------ELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVA 1431 (1930)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333332222332 44567777788888888888877776665 34555555555555555554444445
Q ss_pred HHHHHHHhhhhHHHHhhhhccc--chHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHH
Q psy12517 748 LKEKELKTKESEINVLKNQSSD--NVTK-------QITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIK 818 (1286)
Q Consensus 748 ea~K~~RK~ERrIKEL~~Q~ee--kn~~-------rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~a 818 (1286)
...+..++.++-+.+.+...++ ...+ +...-+..++++++++-+.+.........++.++++++ ...
T Consensus 1432 ~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~----~~~ 1507 (1930)
T KOG0161|consen 1432 ALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLE----EQK 1507 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 5677777777777776665554 1111 11122244555555555555555555555556665555 555
Q ss_pred HHHHHHHHHHHH
Q psy12517 819 ASLVKEKENNHG 830 (1286)
Q Consensus 819 d~lE~ev~kLrs 830 (1286)
+.+.+.+..|..
T Consensus 1508 ~e~~k~v~elek 1519 (1930)
T KOG0161|consen 1508 DEGGKRVHELEK 1519 (1930)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 8
>KOG4787|consensus
Probab=99.68 E-value=2e-15 Score=174.97 Aligned_cols=481 Identities=28% Similarity=0.368 Sum_probs=310.2
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 292 TASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKE 371 (1286)
Q Consensus 292 ~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE 371 (1286)
.++.+..|.-.++..++.|-++..+--++-....++..-.. -.+-.-++......+..|.++++.++-++..
T Consensus 6 ~S~~~~~L~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~--------~~s~~~~~~~~~ss~~~~~~~~E~~~~~~s~ 77 (852)
T KOG4787|consen 6 ESSLINMLEDRLNQAENQIQDYRDENTVLKCELRELQETTF--------ATSDEKLREKIRTTEGLCDELMEENEQLKAE 77 (852)
T ss_pred hhhhhhhhhhcccCchhccchHHHHHHHHHHHHHHhhcccc--------cccCcchHHHhhhhhhHHHHHHHHhhhhhhh
Confidence 46777888888899999999999888888887777765321 1122345567778899999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-ccHH-
Q psy12517 372 LRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEG-VNKV- 449 (1286)
Q Consensus 372 ~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~g-v~~~- 449 (1286)
+..++.++.+|++.++++.|..++++++.+++-.+|||.|+|.+|+-++.+++.|+|..+.+.+.-.....++. |.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~L~~~~Rr~~~s~D~~E~E~~~s~~~~~~~~~S~~~si~~~i 157 (852)
T KOG4787|consen 78 VKDLQQEIEEMQDQYREEEIEEFRELQRELELNAKNCRVLQFKLRKTERSRDQAEAEKMHSEKKLDEYMNSCPEAVAASI 157 (852)
T ss_pred ccCccccchhhhhhcChhhHHHHHHHHHHHhhcchheeeeccCccccchhhhHHHHHhhcCCcchhccCCCCcchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998887776654432 2221
Q ss_pred ---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-CCcchHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy12517 450 ---ERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALP-KTPSVETAEKLQKDLKEATDKLERANGGKP 525 (1286)
Q Consensus 450 ---~~I~eLEreLk~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~-~~~a~~~kkKLE~dL~ElE~kle~ank~k~ 525 (1286)
..--.+|+.++++.++++|+|++++.-+++++ |+.+.+ +..+.-.....+..|.+...+.+.+
T Consensus 158 ~~~S~~~~~E~~~r~~~~~~~R~~N~~E~s~Er~~--------~~~~E~~~~~~~~~~i~~~~~~R~~~~~s~~~----- 224 (852)
T KOG4787|consen 158 KSDSAKVELEYEIRVAKEVSVRLHNELEQTEEKRC--------KLEDEVFYLKEKVREIQTQNKWREARNKTDIA----- 224 (852)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHhhhHhhhhhccC--------cchhHHHhhhcCCccccCCChhhhhcCCcHHH-----
Confidence 12267899999999999999999999987763 222222 2222222222333344433222222
Q ss_pred ccccCCCCCCccccchhhhhccCCCCcc--hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy12517 526 PKLGALPKTPSVEKVSRETLTRGGSQED--PTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQ 603 (1286)
Q Consensus 526 ealkql~K~~~~~k~~~~sl~r~gsqe~--~k~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~E 603 (1286)
+.+.+..|..+-.. ...+-..+-++.++..||++|.+|+++.. .++..+++++.++|..+..+
T Consensus 225 --------------~~~~~~~~AA~~P~~~~~~~s~~~~~s~~~~~~Lr~~~~~S~~~~-~r~~~~~~~~~~~~~~~~rK 289 (852)
T KOG4787|consen 225 --------------VKRLSAEIAASVPNIPENEMSKELRDALEREIDLREQMRFSEEDL-KRTQIRLQDVENENEELLKK 289 (852)
T ss_pred --------------HHHHHHHHhcCCCCcchhhhhhhhhhhhcccchhHhhhccchhhh-hhheeeccccccccHHHHHH
Confidence 22223333333111 13456778889999999999999999998 88999999999999999998
Q ss_pred HHHH--------HH-------------------------hhhhhHHHHHHHHHhhhhhhhhHHHHHhhhchH--HHHHhH
Q psy12517 604 IEKV--------RA-------------------------ESSTEKTQITGELESLKSKLSALEAEKKKFETD--ILEKSS 648 (1286)
Q Consensus 604 lekL--------rs-------------------------~ae~E~~EL~eELesL~sk~ssLe~eKRKLE~d--qLE~eL 648 (1286)
+-+. ++ .+.-.+.=+..++.+++++...++.+|..|-.+ .|+++|
T Consensus 290 ~s~s~~~r~~~~~s~~~~s~~~~~~~S~~~~~~~~~~D~N~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~ 369 (852)
T KOG4787|consen 290 LSKASKLRPPMIRSARLVTACTCQKVSDITFLMFCRCDGNAHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADC 369 (852)
T ss_pred HhhhhcccchhhhhhhhhhhhccccchhHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Confidence 8632 11 000122224588999999999999999999877 778888
Q ss_pred HHHhh-hhhh-----hhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhH-------HHhHHHHHHhhH
Q psy12517 649 KITQL-EASI-----REERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKL-------ERDKTSLEENLK 715 (1286)
Q Consensus 649 eE~q~-E~e~-----~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~L-------E~qvKELq~RL~ 715 (1286)
++.-. ++-. .++|+|.+++.-+|-++.+..-..+ ++...+.+.|..+-....| -..+..+++.+.
T Consensus 370 ~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~--~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~ 447 (852)
T KOG4787|consen 370 KRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNL--ELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMN 447 (852)
T ss_pred cccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhcc--cHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHH
Confidence 77521 1111 1278888888776665543321111 1111111111111111100 011223333333
Q ss_pred HHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 716 SKETQM-TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESE-INVLKNQSSDNVTKQITELKTQYEQEIKKLEDTL 793 (1286)
Q Consensus 716 E~Es~a-Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERr-IKEL~~Q~eekn~~rlqEl~KqyKRQlEEaEEea 793 (1286)
|+--.. +..|. .+.+|-.+|+.-.+-+..++--++|.+|+ +..-.++.++.+ .|.-+|.+.
T Consensus 448 E~~Dt~~~~dV~----~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~-------------kIK~LE~e~ 510 (852)
T KOG4787|consen 448 ELKDTVFKSDVQ----KVISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSDEL-------------KIKILELEK 510 (852)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccchHH-------------HHHHHHHHH
Confidence 332221 22222 23556666777667666777777777763 222222222211 133344444
Q ss_pred HHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHh
Q psy12517 794 VQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGR 831 (1286)
Q Consensus 794 ~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsk 831 (1286)
--...=-++|+.|||... --.+.++-.+.-|+..
T Consensus 511 R~S~~Ls~~L~~ElE~~~----~~~~~~e~~~evL~~~ 544 (852)
T KOG4787|consen 511 RLSEKLAIDLVSELEGKI----PTIDEIEQCCEVLAAV 544 (852)
T ss_pred HHHHHHHHHHHHHHHhhc----CcHhHHHHHHHHHHHH
Confidence 444444577888888876 5555555555555543
No 9
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.67 E-value=5.7e-18 Score=209.88 Aligned_cols=190 Identities=21% Similarity=0.335 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhhhhhhhhHHHHHhhhchH--HHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHH
Q psy12517 611 SSTEKTQITGELESLKSKLSALEAEKKKFETD--ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQ 688 (1286)
Q Consensus 611 ae~E~~EL~eELesL~sk~ssLe~eKRKLE~d--qLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~ 688 (1286)
...++.+|...+...+.-+..|...++.|+.. .|...|++.-..+...+ ....++.+ .+.++..++..
T Consensus 438 L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E--~~~lRl~~--------el~~~r~e~er 507 (859)
T PF01576_consen 438 LQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEE--QKKLRLQV--------ELQQLRQEIER 507 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--------HHHHHHHHHHH
Confidence 33456666666666566677788888888866 77777777777776666 44444444 34444444311
Q ss_pred -HHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q psy12517 689 -LKKEAQRNAEKVTKLERDKTSLEENLKSKETQM----TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVL 763 (1286)
Q Consensus 689 -Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a----Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL 763 (1286)
-.+.-.-+|..|+++.+++.+|+..| +.|.-. -..-.+||+.|.+|+.+|+...+-..++.|.++++...|++|
T Consensus 508 ~l~eKeeE~E~~Rr~~qr~l~~le~~L-E~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdl 586 (859)
T PF01576_consen 508 ELQEKEEEFEETRRNHQRQLESLEAEL-EEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDL 586 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhHHHHHHHhhHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 11222346788999999999999999 455443 244578999999999999999999999999999999999999
Q ss_pred hhhccc--chHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy12517 764 KNQSSD--NVTKQITELK-------TQYEQEIKKLEDTLVQERQEYEDLTNRYDILE 811 (1286)
Q Consensus 764 ~~Q~ee--kn~~rlqEl~-------KqyKRQlEEaEEea~~~~akyRKLQrELEeae 811 (1286)
..++++ .....+...+ +.+.-+++++..........++.+..+++++.
T Consensus 587 q~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~ 643 (859)
T PF01576_consen 587 QRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQ 643 (859)
T ss_dssp ---------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 2222222222 55666677777777777777777777777776
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.59 E-value=4.2e-08 Score=123.33 Aligned_cols=38 Identities=8% Similarity=-0.071 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhcCCccccchhhhH----HHHhhhhhhhhh
Q psy12517 899 SQNRIRRAAFAAKKSVSTESDHTGESSS----RALHRKGSLYRK 938 (1286)
Q Consensus 899 v~~rI~rLe~~m~~lVNM~Ai~Eyd~V~----~rl~el~s~r~~ 938 (1286)
+..+|..+...+..|.+ ||++|.+|. .+|+.+...+.-
T Consensus 963 ~~~~~~~l~~~i~~lg~--aiee~~~~~~~a~er~~~l~~q~~d 1004 (1179)
T TIGR02168 963 IEDDEEEARRRLKRLEN--KIKELGPVNLAAIEEYEELKERYDF 1004 (1179)
T ss_pred cccCHHHHHHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45678899999999965 999999998 777776665555
No 11
>KOG4674|consensus
Probab=99.58 E-value=2.7e-08 Score=129.43 Aligned_cols=452 Identities=22% Similarity=0.262 Sum_probs=238.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHH--HHh--hhcccc------ccCcCcHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy12517 248 YSDQIDLLRHELDNMKAKCEKLEREKSDIL--LRR--LASMET------TTSKTTASELLKLQQRVNELKTENEDLNDEK 317 (1286)
Q Consensus 248 ~~~~i~~lr~el~~~k~rce~~e~eks~il--lrr--l~~~~t------~~~~t~~sELekLQKklnELQqEIEDLe~Dk 317 (1286)
+.+-...|....+.+...|.+++.+..+-- ++- .++|-. ++.....+-+.++--.+-.++++++.+-.++
T Consensus 328 l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lel 407 (1822)
T KOG4674|consen 328 LKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLEL 407 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777778788888886544332 222 111111 1122233344444445555555555555555
Q ss_pred HHHHHHHHHHHHHHH-----------h----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 318 KSLSLRVRELETEAA-----------A----FKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEM 382 (1286)
Q Consensus 318 k~L~qrLreLEKKQK-----------k----fdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEEL 382 (1286)
+++.-.+...-+..+ . .....++......+..++..++..++.+...+..+.++++.+...+.++
T Consensus 408 e~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdl 487 (1822)
T KOG4674|consen 408 ERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDL 487 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444433 1 1144556666677778889999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHhHHHHHHHHHhhHH-----------------------------HHHHHHHHHHHHHHHHHHHHHH
Q psy12517 383 QDHFREDQADEYSSLKKELEQTAKNCRIL-----------------------------SFKLRKSERRSEQLEAEKLEAE 433 (1286)
Q Consensus 383 rDs~rEe~~de~~eL~KeLheleKncRiL-----------------------------q~kLrKaerk~EElE~E~~~~E 433 (1286)
..++ +- |-.+++.+...|-|. +.+=-++--.+-.|.+.+...|
T Consensus 488 srqv-----~~---Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E 559 (1822)
T KOG4674|consen 488 SRQV-----NV---LLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAE 559 (1822)
T ss_pred HHHH-----HH---HHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887 22 244555554444332 2222222222233333333333
Q ss_pred HHHHh-hhcCC-Ccc-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCCCCCcchHHHHHHHH
Q psy12517 434 KKCRE-VCGGM-EGV-NKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGG--KPPKLGALPKTPSVETAEKLQK 508 (1286)
Q Consensus 434 ~k~lr-le~~~-~gv-~~~~~I~eLEreLk~akEvs~rLq~eLeelEekle~e~~~--~~~~l~~~~~~~a~~~kkKLE~ 508 (1286)
....- +.... .-+ ..-.+|++|+..+...+..-.-|+++.+.+-..+...... ..|-.-.+..+++-+. .+.
T Consensus 560 ~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~---~e~ 636 (1822)
T KOG4674|consen 560 KTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRA---KEK 636 (1822)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchh---HHH
Confidence 22100 00000 000 0113556666666666655566666666664333222211 2211112222333222 567
Q ss_pred HHHHHHHHHHHhcCCCCccccCCCCCCccccchhhhhccCCCCcchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 509 DLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYS 588 (1286)
Q Consensus 509 dL~ElE~kle~ank~k~ealkql~K~~~~~k~~~~sl~r~gsqe~~k~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~ 588 (1286)
.|.+++..|+.+..-+. ..+.++ ++++..|+.++.+.+.....+..++.||.+++ ..|..
T Consensus 637 ~l~qLe~~le~~~~E~~---~~~~~l----------------~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekl-e~L~~ 696 (1822)
T KOG4674|consen 637 RLRQLENELESYKKEKR---ENLKKL----------------QEDFDSLQKEVTAIRSQLEKLKNELNLAKEKL-ENLEK 696 (1822)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHH----------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHH
Confidence 78888888876654333 222343 67889999999999999999999999999998 66665
Q ss_pred hhccCCCCchHHHHHHHHHHH----------hhhh--------------hHHHHHHHHHhhhhhhhhHHHHHhhh-----
Q psy12517 589 VARDAFHPNLVQYLQIEKVRA----------ESST--------------EKTQITGELESLKSKLSALEAEKKKF----- 639 (1286)
Q Consensus 589 ~~~~~~~~~~~L~~ElekLrs----------~ae~--------------E~~EL~eELesL~sk~ssLe~eKRKL----- 639 (1286)
.-+.+.+++..|++ ...+ .+.-+..++..|+..+..|.....+|
T Consensus 697 -------~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~ 769 (1822)
T KOG4674|consen 697 -------NLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELE 769 (1822)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334455554433 1111 12222233333333333333333333
Q ss_pred --chH--HHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHH----HHHhHHHHHhHHHhHHHHH
Q psy12517 640 --ETD--ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKE----AQRNAEKVTKLERDKTSLE 711 (1286)
Q Consensus 640 --E~d--qLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~----~QklE~~rk~LE~qvKELq 711 (1286)
-.+ .|...+..+|.-....+-.+-+.+-.. +.++..|..+|...+.. +.++......++.++++.+
T Consensus 770 ~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~------e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~ 843 (1822)
T KOG4674|consen 770 KLSAEQESLQLLLDNLQTQKNELEESEMATKDKC------ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQ 843 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 222 333333333222221110111112111 23556666666665555 3345566667778888888
Q ss_pred HhhHHHhhhh----------hhhHHHHHHHHHHHHHHHHHHH
Q psy12517 712 ENLKSKETQM----------TKTISDLQTKCSTLEKSLTAEQ 743 (1286)
Q Consensus 712 ~RL~E~Es~a----------Kk~I~kLEaRI~eLEeeLe~Eq 743 (1286)
..++++..-+ ...|+.|+.++.+|+..|....
T Consensus 844 ~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~ 885 (1822)
T KOG4674|consen 844 NLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAK 885 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8888777654 2446666666666665555433
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=99.54 E-value=2.9e-08 Score=123.80 Aligned_cols=149 Identities=21% Similarity=0.247 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEAT 477 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelE 477 (1286)
...++.+...+..|..+...+..+.++++..+......+..+.+.. ......+..++.++....+-...+..++..++
T Consensus 299 ~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~--e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~ 376 (880)
T PRK02224 299 LAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEA--ESLREDADDLEERAEELREEAAELESELEEAR 376 (880)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555555666666655555544444432100 00113456777777666655566666777776
Q ss_pred HHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCccccchhhhhccCCCCcchhHH
Q psy12517 478 DKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVL 557 (1286)
Q Consensus 478 ekle~e~~~~~~~l~~~~~~~a~~~kkKLE~dL~ElE~kle~ank~k~ealkql~K~~~~~k~~~~sl~r~gsqe~~k~l 557 (1286)
..+.... .....++.++.+++.++..+. ..+..+ ...+.++
T Consensus 377 ~~l~~~~----------------~~l~~l~~el~el~~~l~~~~-------~~~~~~----------------e~~l~~l 417 (880)
T PRK02224 377 EAVEDRR----------------EEIEELEEEIEELRERFGDAP-------VDLGNA----------------EDFLEEL 417 (880)
T ss_pred HHHHHHH----------------HHHHHHHHHHHHHHHHHhcch-------hhhhhh----------------HHHHHHH
Confidence 6664222 233456666666666554322 112222 2345667
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 558 MRDLQDSMEREADLREQLRFAEEERYQRLYS 588 (1286)
Q Consensus 558 qreLqds~Ere~DLkeQLrfaEEe~~~~~r~ 588 (1286)
+..++...+....+...+.|.+.-+ ..++.
T Consensus 418 ~~~~~~l~~~~~~~~~~~~~~~~~l-~~~~~ 447 (880)
T PRK02224 418 REERDELREREAELEATLRTARERV-EEAEA 447 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 7777777777788888888887776 55553
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=99.49 E-value=1.4e-08 Score=126.63 Aligned_cols=264 Identities=19% Similarity=0.221 Sum_probs=127.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccH-----HHHHHHHHHHHHHhHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNK-----VERIQALEKELKLANETAEKLQKD 472 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~-----~~~I~eLEreLk~akEvs~rLq~e 472 (1286)
+..+..+.+.+-.+.+.+..++..+..++.++...+.++..+......... ...+..+-.++...+.....+...
T Consensus 362 ~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~ 441 (880)
T PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443333221100000000 023333334444445555566667
Q ss_pred HHHHHHHHHHhcCCCCC----CCCCCC--CC--cchHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCccccchhhh
Q psy12517 473 LKEATDKLERANGGKPP----KLGALP--KT--PSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRET 544 (1286)
Q Consensus 473 LeelEekle~e~~~~~~----~l~~~~--~~--~a~~~kkKLE~dL~ElE~kle~ank~k~ealkql~K~~~~~k~~~~s 544 (1286)
|+.++..+. .+.-| ++...+ .+ .......++...+.+++..++.++... ..++.+.+.
T Consensus 442 l~~~~~~l~---~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~-e~l~~~~~~---------- 507 (880)
T PRK02224 442 VEEAEALLE---AGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL-ERAEDLVEA---------- 507 (880)
T ss_pred HHHHHHHHh---cccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------
Confidence 777764442 11110 011111 00 122445566677777887777766432 222222111
Q ss_pred hccCCCCcchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHH---hhhhhHHHHHHH
Q psy12517 545 LTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRA---ESSTEKTQITGE 621 (1286)
Q Consensus 545 l~r~gsqe~~k~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs---~ae~E~~EL~eE 621 (1286)
+.++..++..+++..+..++..+++...++++ ..++..+ ..|..++.++.. .++.+..++.++
T Consensus 508 ------~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~-~~l~~e~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~ 573 (880)
T PRK02224 508 ------EDRIERLEERREDLEELIAERRETIEEKRERA-EELRERA-------AELEAEAEEKREAAAEAEEEAEEAREE 573 (880)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33455666666666666666777777777776 4443322 112233322221 244566666677
Q ss_pred HHhhhhhhhhHHHHHhhhchH--HHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHH
Q psy12517 622 LESLKSKLSALEAEKKKFETD--ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEK 699 (1286)
Q Consensus 622 LesL~sk~ssLe~eKRKLE~d--qLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~ 699 (1286)
+..+..++..+..++.+|+ + .+..++. .+..++...+.....++..
T Consensus 574 ~~~~~~~~~~l~~~~~~le-~~~~~~~~i~-------------------------------~~~~~~~~~~~~~~~l~~~ 621 (880)
T PRK02224 574 VAELNSKLAELKERIESLE-RIRTLLAAIA-------------------------------DAEDEIERLREKREALAEL 621 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777776 2 2222222 2333333333334444444
Q ss_pred HHhHHHhHHHHHHhhHHHhhhh
Q psy12517 700 VTKLERDKTSLEENLKSKETQM 721 (1286)
Q Consensus 700 rk~LE~qvKELq~RL~E~Es~a 721 (1286)
+..+...+.+++.++++++...
T Consensus 622 ~~~~~~~l~~~r~~i~~l~~~~ 643 (880)
T PRK02224 622 NDERRERLAEKRERKRELEAEF 643 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666777777777776543
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.48 E-value=1.6e-07 Score=118.80 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKLEREKS 274 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~e~eks 274 (1286)
..+.+.+..|+..+..++.+++.|++.+.
T Consensus 180 ~~~~~~l~el~~~~~~L~~q~~~l~~~~e 208 (1164)
T TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRRERE 208 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666777777777766665
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=5.8e-07 Score=117.43 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVR 325 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLr 325 (1286)
.++..+|..++.+|..++...+++.+=+.. +..++..+..+..++.++..++..+..++.
T Consensus 196 k~~~~~~~~~~~~~~~~~~~~~~~~~ir~~--------------------l~~~q~kie~~~~~~~~le~ei~~l~~~~~ 255 (1311)
T TIGR00606 196 QTQGQKVQEHQMELKYLKQYKEKACEIRDQ--------------------ITSKEAQLESSREIVKSYENELDPLKNRLK 255 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666655555543332 234444455555555555555555555555
Q ss_pred HHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHH
Q psy12517 326 ELETEAAAFKK----SNAAEREAEALRTKLAAAEGLC-EELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKE 400 (1286)
Q Consensus 326 eLEKKQKkfdk----~eEld~sieELRTKLlsLE~al-EEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~Ke 400 (1286)
.+..-...|.. +..+.............+...+ +++.+..++|+..+.++...+.++...+ . ++...
T Consensus 256 ~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~~~-----~---~le~e 327 (1311)
T TIGR00606 256 EIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKEREL-----V---DCQRE 327 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHH-----H---HHHHH
Confidence 55544433321 1111111111111111111111 1223333444444444444444444333 2 22455
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 401 LEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREV 439 (1286)
Q Consensus 401 LheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrl 439 (1286)
++.+...+..|..+.....+....++++....+..+.+.
T Consensus 328 ~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~ 366 (1311)
T TIGR00606 328 LEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRAR 366 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555554444444433
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=9.1e-07 Score=115.66 Aligned_cols=108 Identities=16% Similarity=0.307 Sum_probs=70.0
Q ss_pred HhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc------chHHH
Q psy12517 701 TKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD------NVTKQ 774 (1286)
Q Consensus 701 k~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee------kn~~r 774 (1286)
..++.++++|...+....+. .++..++..|..++.+|+....+....+....++.++|+.|..++.+ +-..+
T Consensus 802 ~~l~~qie~l~~~l~~~~~~--~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~ 879 (1311)
T TIGR00606 802 KDVERKIAQQAAKLQGSDLD--RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTN 879 (1311)
T ss_pred HHHHHHHHHHHHHhcccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666544332 46777888888888888888777777777777777888877554443 11223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy12517 775 ITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILE 811 (1286)
Q Consensus 775 lqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae 811 (1286)
++ ...+++.+++++.+++.........+..+++.+.
T Consensus 880 l~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~ 915 (1311)
T TIGR00606 880 LQ-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLE 915 (1311)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33 3366666677777777666666666666666665
No 17
>KOG0996|consensus
Probab=99.43 E-value=6.9e-08 Score=120.62 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhh--cCCccccchhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhcCCcchhhhhhHhHHH---
Q psy12517 899 SQNRIRRAAFAAKKS--VSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSIDD--- 973 (1286)
Q Consensus 899 v~~rI~rLe~~m~~l--VNM~Ai~Eyd~V~~rl~el~s~r~~~Ls~Ere~IlErIeq~ek~kkd~~sfM~sfeaInk--- 973 (1286)
+-+.|.-|+.....+ ||...|-||...-.-|-.-...+.. ....|+...+..+.++++.-+ -||..|+-|..
T Consensus 1076 i~e~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~-~t~kr~~~re~l~~Lrk~Rld--EFm~gf~~Is~kLk 1152 (1293)
T KOG0996|consen 1076 INEKIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELEK-FTQKRDEHREKLEELRKRRLD--EFMAGFNIISMKLK 1152 (1293)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 334567788888777 9999999999888888777777777 888899999999999999888 99999999998
Q ss_pred -HHHhhcCCCcccch
Q psy12517 974 -AYENVKYTNYGRRE 987 (1286)
Q Consensus 974 -If~~LS~G~~geLe 987 (1286)
+|.-|+.|+.++|+
T Consensus 1153 emYQmIT~GGdAeLE 1167 (1293)
T KOG0996|consen 1153 EMYQMITLGGDAELE 1167 (1293)
T ss_pred HHHHHHhcCCcceeE
Confidence 99999998677653
No 18
>KOG4674|consensus
Probab=99.40 E-value=7.5e-06 Score=107.52 Aligned_cols=386 Identities=18% Similarity=0.226 Sum_probs=205.3
Q ss_pred HHHHHHHHhhhhHHHHhhhhccc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHH
Q psy12517 747 ALKEKELKTKESEINVLKNQSSD-------NVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKA 819 (1286)
Q Consensus 747 ~ea~K~~RK~ERrIKEL~~Q~ee-------kn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad 819 (1286)
..+.+..+-+.-.|-++..++.+ .+.-.++.+++-+.+..+-++.++.........|.+.++.+. -..+
T Consensus 1116 ~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~----k~i~ 1191 (1822)
T KOG4674|consen 1116 ESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLN----RTID 1191 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 33444444445555555555331 235567888899999999999999999998999999988887 6666
Q ss_pred HHHHHHHHHHHhhhhhccccccccCCcccccccccCCchhhhhchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCcHHH
Q psy12517 820 SLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRASQLPPTPPTTEES 899 (1286)
Q Consensus 820 ~lE~ev~kLrsklr~~~kg~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~Pd~eev 899 (1286)
.|...++-.|+..+.++.-++=+ +++-.+..+|..+.-=..-+++++.+. .-.+.++
T Consensus 1192 dL~~sL~~~r~~~q~~a~s~~e~-----------------~~i~~~v~~vNll~EsN~~LRee~~~~------~~k~qEl 1248 (1822)
T KOG4674|consen 1192 DLQRSLTAERASSQKSAVSDDEH-----------------KEILEKVEEVNLLRESNKVLREENEAN------LEKIQEL 1248 (1822)
T ss_pred HHHHHHHHHHHhhccchhhhhhh-----------------hHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHH
Confidence 66666666666554311111100 111122222322222222222222100 0013344
Q ss_pred HHHHHHHHHHHHhhcCCccccchhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhcCCcchhhhhhHhHHH-HHHhh
Q psy12517 900 QNRIRRAAFAAKKSVSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSIDD-AYENV 978 (1286)
Q Consensus 900 ~~rI~rLe~~m~~lVNM~Ai~Eyd~V~~rl~el~s~r~~~Ls~Ere~IlErIeq~ek~kkd~~sfM~sfeaInk-If~~L 978 (1286)
++.|..++..+..| ...+.++...... ...+..-+.+-.++ |+.-.+ ..+..|..++. =|.+
T Consensus 1249 ~~~i~kl~~el~pl------------q~~l~el~~e~~~-~~ael~~l~~e~~~-wK~R~q--~L~~k~k~~d~~~~~k- 1311 (1822)
T KOG4674|consen 1249 RDKIEKLNFELAPL------------QNELKELKAELQE-KVAELKKLEEENDR-WKQRNQ--DLLEKYKDSDKNDYEK- 1311 (1822)
T ss_pred HHHHHHHHhhHhhH------------HHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHH--HHHHHhhcCCHHHHHH-
Confidence 55555555443333 2333333333333 22222222222222 222222 23333332222 2333
Q ss_pred cCCCcccchhhhhhHHHHHHhhhhhHHHHHHhhh-------hhhhhhhHHHHHHHhHHHHhhhhhhhHHHHHHHhHHHHh
Q psy12517 979 KYTNYGRRETSMDRLEAEEKARKSDVAAVKMRYD-------KRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTIA 1051 (1286)
Q Consensus 979 S~G~~geLe~~~~~l~~~e~~~k~~~a~~~~ry~-------~~~~~~~~e~~~~~~~~~r~kr~rd~~k~~le~aq~~~~ 1051 (1286)
|-++|-+|...-.+...-.|.+++++. +++..+..+.+.+..++.+.+-=-..|.+|+.-.-+.+-
T Consensus 1312 -------L~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~ 1384 (1822)
T KOG4674|consen 1312 -------LKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQEL 1384 (1822)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555566666777776654 577888888888888888877777777777776666544
Q ss_pred hhhhcCCCCCccccCCCCccccccccchhhccccccchhhhhcccCccCCCCCCCcCCCCCCcccccccchhhhhhhccc
Q psy12517 1052 DLKASHNSPTTSRLSGGSTHSEVITTSDRKKKGLFGKLKQLTRSSHSVDRDSDTSQFDPGSDTSLDDSRNLKDRITGIFK 1131 (1286)
Q Consensus 1052 ~~k~~~~~~~~srls~gSt~s~~~~~~~~~~kg~~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~fk 1131 (1286)
++...- +.-+. +..+| ++- .--++.++.
T Consensus 1385 el~~~~-----------------------~~~~~---~~e~t-~rk---------------------~e~~~~k~~---- 1412 (1822)
T KOG4674|consen 1385 ELSDKK-----------------------KAHEL---MQEDT-SRK---------------------LEKLKEKLE---- 1412 (1822)
T ss_pred HHHHHH-----------------------HHHHH---HHHHH-HHH---------------------HHHHHHHHh----
Confidence 444331 00010 00011 000 001111111
Q ss_pred ccCCCCCCCChhhhhhHHHHHHHhhhhhhhhhhhhhhhhccchhhhcc-----ccccchhhhhhhhhhhhhhhhhhhhcC
Q psy12517 1132 KSGSTSRANSVDDLKAVITSLEQQISCMEDELSESRLETSRLKTELVS-----EKSAAEIKLSELTSKVNELEEDRLLSS 1206 (1286)
Q Consensus 1132 ~~~~~~~~~s~~~~~~~~~~leqqi~~~ed~l~e~rle~s~~~~elvs-----e~s~~~~k~se~~s~~ne~ee~~~~~s 1206 (1286)
+-..|..|=.+++...-....++=++..+.-|+|- ++|..++++.+..-..|.+.+.=+=--
T Consensus 1413 -------------~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~~~~e~~~~~i~~~~e~~~~~~~~~~ 1479 (1822)
T KOG4674|consen 1413 -------------LSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEKSTTERLLEEIKKLLETVRKKTVDAD 1479 (1822)
T ss_pred -------------HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444444333444444444444444432 126888899888888888877666566
Q ss_pred CCCCccCccchhhhhhchhhhHHHHHHHHHhhhHHHHHHHhhHHHH
Q psy12517 1207 GRTNKIPGLKTRMELAWHKEREEQQRLLQETSTLARDLRQTLFEVE 1252 (1286)
Q Consensus 1207 g~~~k~~g~~~r~el~w~kere~~qrllqet~tlardlrqtl~eve 1252 (1286)
|.++.|.|++- .|-++-++--+.+++-+.=.-++|.-|--.|
T Consensus 1480 ~~~~~le~~k~----e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~ee 1521 (1822)
T KOG4674|consen 1480 SKSENLEGTKK----ELESEKEELKQRLTELAAENLKLRSRLAKEE 1521 (1822)
T ss_pred HHHHhHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 66678999886 5777877777778888877778888775554
No 19
>KOG0933|consensus
Probab=99.38 E-value=8.6e-07 Score=109.85 Aligned_cols=90 Identities=7% Similarity=0.077 Sum_probs=81.5
Q ss_pred CcHHHHHHHHHHHHHHHhh---cCCccccchhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhcCCcchhhhhhHhH
Q psy12517 895 TTEESQNRIRRAAFAAKKS---VSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSI 971 (1286)
Q Consensus 895 d~eev~~rI~rLe~~m~~l---VNM~Ai~Eyd~V~~rl~el~s~r~~~Ls~Ere~IlErIeq~ek~kkd~~sfM~sfeaI 971 (1286)
+..+.++++..|+.....| |||.+..=.+.++..+.++..++++ +.....-|..-|..+...+.+ +...+|..|
T Consensus 959 ~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~-Ie~Dk~kI~ktI~~lDe~k~~--~L~kaw~~V 1035 (1174)
T KOG0933|consen 959 DPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEI-IEKDKSKIKKTIEKLDEKKRE--ELNKAWEKV 1035 (1174)
T ss_pred CHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 5667789999998866555 9999999999999999999999999 999999999999999999999 999999999
Q ss_pred HH----HHHhhcCCCcccch
Q psy12517 972 DD----AYENVKYTNYGRRE 987 (1286)
Q Consensus 972 nk----If~~LS~G~~geLe 987 (1286)
|. ||+.|=||+.+.|+
T Consensus 1036 N~dFG~IFs~LLPga~AkL~ 1055 (1174)
T KOG0933|consen 1036 NKDFGSIFSTLLPGAMAKLE 1055 (1174)
T ss_pred hhhHHHHHHHhCCCcccccc
Confidence 99 99999999665554
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.36 E-value=5e-06 Score=107.83 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=69.9
Q ss_pred chhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhcCCcchhhhhhHhHHH-HHHhhcCCCcc-----cchhhhhhHH
Q psy12517 921 TGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSIDD-AYENVKYTNYG-----RRETSMDRLE 994 (1286)
Q Consensus 921 Eyd~V~~rl~el~s~r~~~Ls~Ere~IlErIeq~ek~kkd~~sfM~sfeaInk-If~~LS~G~~g-----eLe~~~~~l~ 994 (1286)
++..+.+.+.++.+.... +..+...+..++..+. ..+..+..+.. ++..+.+. .. .++..+..|+
T Consensus 885 ~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~le 955 (1163)
T COG1196 885 EKEELEEELRELESELAE-LKEEIEKLRERLEELE-------AKLERLEVELPELEEELEEE-YEDTLETELEREIERLE 955 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhccc-cccchhHHHHHHHHHHH
Confidence 344444555555555444 4444444444444432 33333332222 44444442 11 3344444333
Q ss_pred HH-------HHhhhhhHHHHHHhhh---hhhhhhhHHHHHHHhHHHHhhhhh-hhHHHHHHHhHHHHhhhhhcCCCCCcc
Q psy12517 995 AE-------EKARKSDVAAVKMRYD---KRATALSDELKAIQGQVLRFKRER-DTFKHMLEGAQKTIADLKASHNSPTTS 1063 (1286)
Q Consensus 995 ~~-------e~~~k~~~a~~~~ry~---~~~~~~~~e~~~~~~~~~r~kr~r-d~~k~~le~aq~~~~~~k~~~~~~~~s 1063 (1286)
.. -...-.+...+.-||+ .+...|......++..+..|++++ ..|+.......+....+= .
T Consensus 956 ~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if--------~ 1027 (1163)
T COG1196 956 EEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIF--------K 1027 (1163)
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 33 2334566777777776 455666677777777777776653 455555555555444433 4
Q ss_pred ccCCCCccccccc
Q psy12517 1064 RLSGGSTHSEVIT 1076 (1286)
Q Consensus 1064 rls~gSt~s~~~~ 1076 (1286)
.|.||+++.=.+.
T Consensus 1028 ~L~~GG~a~L~l~ 1040 (1163)
T COG1196 1028 ELFGGGTAELELT 1040 (1163)
T ss_pred HhCCCCeeEEEeC
Confidence 4566655543333
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=99.35 E-value=1.4e-06 Score=108.75 Aligned_cols=83 Identities=31% Similarity=0.372 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12517 345 EALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQ 424 (1286)
Q Consensus 345 eELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EE 424 (1286)
..++..+..+...+..+..+++.++.++..+..++..+.... .++..|..+++.+......|+..+.+.+..+.+
T Consensus 196 ~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~-----~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~ 270 (880)
T PRK03918 196 KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK-----EEIEELEKELESLEGSKRKLEEKIRELEERIEE 270 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555554444444444444 444444444444444444444444444444444
Q ss_pred HHHHHHHH
Q psy12517 425 LEAEKLEA 432 (1286)
Q Consensus 425 lE~E~~~~ 432 (1286)
++.++..+
T Consensus 271 l~~~l~~l 278 (880)
T PRK03918 271 LKKEIEEL 278 (880)
T ss_pred HHHHHHHH
Confidence 44444333
No 22
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.25 E-value=2.4e-05 Score=97.59 Aligned_cols=243 Identities=19% Similarity=0.238 Sum_probs=133.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHh----------hhh-------hHHHH
Q psy12517 556 VLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAE----------SST-------EKTQI 618 (1286)
Q Consensus 556 ~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs~----------ae~-------E~~EL 618 (1286)
.++.-++.--.....+.-.++.++.++ ..|+.++..+..+++.+..+++-.++. +.. |+.-+
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei-~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~ 306 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEI-YRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEAL 306 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444345567777888899999 899999998889999987777744431 111 22222
Q ss_pred HHHHHhhhhhhhhHHHHHhhh-------chH--HHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHH
Q psy12517 619 TGELESLKSKLSALEAEKKKF-------ETD--ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQL 689 (1286)
Q Consensus 619 ~eELesL~sk~ssLe~eKRKL-------E~d--qLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~E 689 (1286)
..++.++..+...+-..+..| +.. .|+++++.....++... ..+.+... ++..+++|+.-.
T Consensus 307 qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~--~~l~kk~~--------~~~~~qeE~~~~ 376 (775)
T PF10174_consen 307 QTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKN--SQLEKKQA--------QIEKLQEEKSRL 376 (775)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHH--------HHHHHHHHHHHH
Confidence 233333333333332222222 122 66777777777777766 55556655 444445554444
Q ss_pred HHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh--h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhh
Q psy12517 690 KKEAQRNAEKVTKLERDKTSLEENLKSKETQM--T-KTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQ 766 (1286)
Q Consensus 690 qe~~QklE~~rk~LE~qvKELq~RL~E~Es~a--K-k~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q 766 (1286)
+..+-++-.+-..-++.|..|+.+|+.++... | +++..+..|+.. +.+--.+-.-.....+.+.-++|-+..|.-+
T Consensus 377 ~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~ 455 (775)
T PF10174_consen 377 QGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQ 455 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444556667777777777776665 1 345555555553 3332222222234555555666655555433
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy12517 767 SSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILE 811 (1286)
Q Consensus 767 ~eekn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae 811 (1286)
-. ..-...++-...|+.++.++...+....+.+-..+-.|+++.
T Consensus 456 r~-~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~k 499 (775)
T PF10174_consen 456 RE-RAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAK 499 (775)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 21 111222333356666666666666666666655555555555
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=99.23 E-value=4.8e-05 Score=95.23 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=39.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHH--HHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy12517 244 NDNEYSDQIDLLRHELDNMKAKCEKLEREKSDIL--LRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLS 321 (1286)
Q Consensus 244 ~~~~~~~~i~~lr~el~~~k~rce~~e~eks~il--lrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~ 321 (1286)
+.+.|..-...++.....++.+.+.++.....+- .+++.. .-..+..+.+.+..+..++..+...+..+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~--------l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~ 227 (880)
T PRK03918 156 GLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKE--------KEKELEEVLREINEISSELPELREELEKLE 227 (880)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544443221 333321 123355555555555555555555555555
Q ss_pred HHHHHHHHHHH
Q psy12517 322 LRVRELETEAA 332 (1286)
Q Consensus 322 qrLreLEKKQK 332 (1286)
..+..|+....
T Consensus 228 ~~l~~l~~~~~ 238 (880)
T PRK03918 228 KEVKELEELKE 238 (880)
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 24
>KOG0964|consensus
Probab=99.21 E-value=5.7e-05 Score=94.08 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhhcCCCCC----CC--CcHHHHHHHHHHHHHHHhh--cCCccccchhhhHHHHhhhhhhhhhhhhhhh
Q psy12517 873 LQRLTEVAAELKRASQLPPT----PP--TTEESQNRIRRAAFAAKKS--VSTESDHTGESSSRALHRKGSLYRKSLSLEQ 944 (1286)
Q Consensus 873 ~~~l~~~~~~~~~~~~~~~~----~P--d~eev~~rI~rLe~~m~~l--VNM~Ai~Eyd~V~~rl~el~s~r~~~Ls~Er 944 (1286)
+++..+.-+.||.+.-+|.. .| ...++..++.+...+++.+ ||-.|++.|.....+.++|..+..- |..-.
T Consensus 922 l~KreE~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eE-Ld~s~ 1000 (1200)
T KOG0964|consen 922 LKKREECCEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEE-LDRSK 1000 (1200)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH-hccch
Confidence 44555666777766655421 11 5677778888888888787 9999999999999999999999988 99999
Q ss_pred hhhHHHHHHHhhhcCCcchhhhhhHhHHH----HHHhhcCCCcccchhhh
Q psy12517 945 TSQLAQEENIWKMTDDNDSSLTSFQSIDD----AYENVKYTNYGRRETSM 990 (1286)
Q Consensus 945 e~IlErIeq~ek~kkd~~sfM~sfeaInk----If~~LS~G~~geLe~~~ 990 (1286)
+.|.+.|--+...|.+ +-=-+|-.|.+ +|.+|-||++|.++...
T Consensus 1001 ~sI~eLi~vLdqrK~e--ai~~TFkqV~knFsevF~~LVp~G~a~iim~k 1048 (1200)
T KOG0964|consen 1001 DSILELITVLDQRKYE--AIDLTFKQVKKNFSEVFSRLVPGGTALIIMRK 1048 (1200)
T ss_pred hHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHhCCCCceeehhhc
Confidence 9999999999999999 77778888877 99999997799777665
No 25
>KOG0996|consensus
Probab=99.16 E-value=3.6e-05 Score=97.28 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhh---hhHHHHHHHHHHHHHH
Q psy12517 681 QLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMT---KTISDLQTKCSTLEKS 738 (1286)
Q Consensus 681 qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aK---k~I~kLEaRI~eLEee 738 (1286)
.+...+++-+++...++.....|...+.+|+.+|..+++.++ ..|+.|+..|.++|..
T Consensus 789 ~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 789 KMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555556666666667777776666665552 2344444444444433
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.10 E-value=0.00028 Score=92.35 Aligned_cols=235 Identities=19% Similarity=0.310 Sum_probs=104.1
Q ss_pred cCChhhHHHHHHHHH--HHHHHHHHHHHhhhhhhhHH--HHhhhccccc---cCcCc--------------HHHHHHH--
Q psy12517 243 VNDNEYSDQIDLLRH--ELDNMKAKCEKLEREKSDIL--LRRLASMETT---TSKTT--------------ASELLKL-- 299 (1286)
Q Consensus 243 v~~~~~~~~i~~lr~--el~~~k~rce~~e~eks~il--lrrl~~~~t~---~~~t~--------------~sELekL-- 299 (1286)
++..++..-|..++. .+..++...+++...-.++. .++|+..-.. .-... -..+..+
T Consensus 223 ~~~~~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 302 (1201)
T PF12128_consen 223 LKKNDIDDWLRDIRASQGFEKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLED 302 (1201)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666653 55667777777776666655 3333321000 00001 1112222
Q ss_pred --HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 300 --QQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK------------KSNAAEREAEALRTKLAAAEGLCEELMDEN 365 (1286)
Q Consensus 300 --QKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd------------k~eEld~sieELRTKLlsLE~alEEL~EeL 365 (1286)
......+..++..+..++...+..+..++.+...|+ ...+.......++..+..+...+.++....
T Consensus 303 ~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky 382 (1201)
T PF12128_consen 303 EIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKY 382 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233445566666777777777777777777554 222233333333333333333333333332
Q ss_pred HHHHHHHHH----HHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 366 EEMKKELRY----LEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCR-ILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 366 EELKrE~KE----LReEmEELrDs~rEe~~de~~eL~KeLheleKncR-iLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
+.+...++. .......-.+.++++-..........++++...+| .++..+.++..+..++..++..+...+...
T Consensus 383 ~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~- 461 (1201)
T PF12128_consen 383 NKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNP- 461 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-
Confidence 222222111 11111111222222222223333444555555555 444444455555555555444443322211
Q ss_pred cCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12517 441 GGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKL 480 (1286)
Q Consensus 441 ~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekl 480 (1286)
..-....+.+..++.++..+.+.......++..++...
T Consensus 462 --~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 499 (1201)
T PF12128_consen 462 --QYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEE 499 (1201)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112223556777777666555555555555554443
No 27
>KOG0018|consensus
Probab=99.09 E-value=6.2e-05 Score=94.70 Aligned_cols=260 Identities=15% Similarity=0.236 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh------------------------hhhHHHHHHHHHHH
Q psy12517 680 NQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM------------------------TKTISDLQTKCSTL 735 (1286)
Q Consensus 680 ~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a------------------------Kk~I~kLEaRI~eL 735 (1286)
..+.+++...+-++-.+.+.-...|...++|+.+..+++... -+....++.-+..|
T Consensus 714 ~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l 793 (1141)
T KOG0018|consen 714 QRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKL 793 (1141)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333333344444466777777777777777543 01233445666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Q psy12517 736 EKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGE 813 (1286)
Q Consensus 736 EeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~ 813 (1286)
+.+|+=|.. .+.+..+.+.++.|..+..+.++ ++-+.+---+.. ++++|. ++.+++.+.+.++.+..
T Consensus 794 ~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e----~~~~e~---k~k~~~~~~~~e~~e~~-- 862 (1141)
T KOG0018|consen 794 ENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAE----IEELEK---KNKSKFEKKEDEINEVK-- 862 (1141)
T ss_pred hhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhh----HHHHHH---HHHHHHHHHHHHHHHHH--
Confidence 666766665 66777777777777776666665 221111111111 122222 45777888888888777
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccccCCchhhhhchhhhhHHHHHH--HHHHHHHHHHhhcCCC-
Q psy12517 814 HVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQ--RLTEVAAELKRASQLP- 890 (1286)
Q Consensus 814 ~vE~ad~lE~ev~kLrsklr~~~kg~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--~l~~~~~~~~~~~~~~- 890 (1286)
.-...|.+++++|...+-. .. .+|.. +-++..+++. +|.+..==|..- .+.
T Consensus 863 --k~~~~~~~~~tkl~~~i~~-------~e------s~ie~----------~~~er~~lL~~ckl~~I~vPl~~g-s~~d 916 (1141)
T KOG0018|consen 863 --KILRRLVKELTKLDKEITS-------IE------SKIER----------KESERHNLLSKCKLEDIEVPLSSG-SMDD 916 (1141)
T ss_pred --HHHHHHHHHHHHHhhhhhh-------hh------hHHHH----------HHHHHHHHHHHhhhccccccccCC-Cccc
Confidence 7777777777777655433 11 11111 0001111111 111000000000 000
Q ss_pred ---------CCCCCcHHHHHHHHHHHHHHHhh-cCCccccchhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhcCC
Q psy12517 891 ---------PTPPTTEESQNRIRRAAFAAKKS-VSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDD 960 (1286)
Q Consensus 891 ---------~~~Pd~eev~~rI~rLe~~m~~l-VNM~Ai~Eyd~V~~rl~el~s~r~~~Ls~Ere~IlErIeq~ek~kkd 960 (1286)
...|..=.++..|...+..+.++ =||.|.+-|+.|. +.+...+++. ...+...+.++-+.+.+...+
T Consensus 917 ~~~~ieidy~~L~~~y~L~~kl~e~~~~l~~~~Pn~kA~~~~d~v~--~~~~~~EfE~-ark~ak~ak~~F~~VK~~R~~ 993 (1141)
T KOG0018|consen 917 IVIGIEIDYSGLPREYKLQQKLEEKQSVLNRIAPNLKALERLDEVR--FQEINEEFEA-ARKEAKKAKNAFNKVKKKRYE 993 (1141)
T ss_pred cceecccccccccHHHHHHHHHHHHHHHHHHhCcchHHHhhhhhHH--HHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 00111112566777777777777 8999999999999 8899999999 999999999999999988888
Q ss_pred cchhhhhhHhHHH----HHHhhcCC
Q psy12517 961 NDSSLTSFQSIDD----AYENVKYT 981 (1286)
Q Consensus 961 ~~sfM~sfeaInk----If~~LS~G 981 (1286)
.||.+|+.|++ ||..|++.
T Consensus 994 --~F~~~F~~va~~Id~IYK~Ltnt 1016 (1141)
T KOG0018|consen 994 --RFMACFEHVADNIDRIYKELTNT 1016 (1141)
T ss_pred --HHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999988 99999973
No 28
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.07 E-value=0.00023 Score=89.21 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 781 QYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 781 qyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
.+...+...-+.+....+...+|-..|.+++ .-++..+.++.-|.+.|..
T Consensus 552 ~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E----~EK~~ke~ki~~LekeLek 601 (775)
T PF10174_consen 552 QLEQEVTRYREESEKAQAEVERLLDILREAE----NEKNDKEKKIGELEKELEK 601 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHH
Confidence 3444444444455555555566666666666 6666666666666666555
No 29
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.88 E-value=2e-06 Score=103.95 Aligned_cols=235 Identities=17% Similarity=0.217 Sum_probs=164.2
Q ss_pred hHHHhHHHHHHhhHHHhhhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--ch
Q psy12517 702 KLERDKTSLEENLKSKETQM--------TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NV 771 (1286)
Q Consensus 702 ~LE~qvKELq~RL~E~Es~a--------Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn 771 (1286)
.++.++..|+.+|.+..... ...+..++.+|..|-+.|+.|..-+....++..++...|..+.-+... ..
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777644332 466888899999999999999999999999999999998888877765 33
Q ss_pred HHHHHHH----------HHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 772 TKQITEL----------KTQYEQEIK-------KLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 772 ~~rlqEl----------~KqyKRQlE-------EaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
.++++.. ++++..+++ .+++.++.....|..++.+++++. ..-+.++.+...+...+..
T Consensus 333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~----e~leeie~eq~ei~e~l~~ 408 (569)
T PRK04778 333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEIL----KQLEEIEKEQEKLSEMLQG 408 (569)
T ss_pred HHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4444443 344444444 455555555555777777777776 5555555555555554443
Q ss_pred hccccccccCCcccccccccCCchhhhhchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCC-----CcHHHHHHHHHHHHH
Q psy12517 835 TQKGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRASQLPPTPP-----TTEESQNRIRRAAFA 909 (1286)
Q Consensus 835 ~~kg~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~P-----d~eev~~rI~rLe~~ 909 (1286)
.+ +.+..--..|..+...+.++.+.|+ -+.+| ..| ....+..+|..+...
T Consensus 409 -------Lr----------------k~E~eAr~kL~~~~~~L~~ikr~l~-k~~lp-gip~~y~~~~~~~~~~i~~l~~~ 463 (569)
T PRK04778 409 -------LR----------------KDELEAREKLERYRNKLHEIKRYLE-KSNLP-GLPEDYLEMFFEVSDEIEALAEE 463 (569)
T ss_pred -------HH----------------HHHHHHHHHHHHHHHHHHHHHHHHH-HcCCC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111112235555666666666555 33454 455 567788999999998
Q ss_pred HHhh-cCCcccc-chhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhcCCcchhhhhhHhHHH
Q psy12517 910 AKKS-VSTESDH-TGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSIDD 973 (1286)
Q Consensus 910 m~~l-VNM~Ai~-Eyd~V~~rl~el~s~r~~~Ls~Ere~IlErIeq~ek~kkd~~sfM~sfeaInk 973 (1286)
+... |||.||. +|+.+..+++.+.....- |......+..-|.. ...|..+|+.||.
T Consensus 464 L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~d-L~~~a~~lE~~Iqy-------~nRfr~~~~~V~~ 521 (569)
T PRK04778 464 LEEKPINMEAVNRLLEEATEDVETLEEETEE-LVENATLTEQLIQY-------ANRYRSDNEEVAE 521 (569)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HhccCCCCHHHHH
Confidence 8888 9999999 999999999999999988 88777776555555 3489999999999
No 30
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.82 E-value=0.0025 Score=83.80 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 722 TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQE 799 (1286)
Q Consensus 722 Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~ak 799 (1286)
-..|..|+.+|..|+.+|..-. ...-.+..|++=+++.-.+++. .....++..+..++.++.+++...+...+.
T Consensus 770 ~~~I~~l~~~i~~L~~~l~~ie----~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 845 (1201)
T PF12128_consen 770 PERIQQLKQEIEQLEKELKRIE----ERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKE 845 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888887776433 3444556677777776655554 334445555555556666666666665555
Q ss_pred HHHHHhhHhhhh
Q psy12517 800 YEDLTNRYDILE 811 (1286)
Q Consensus 800 yRKLQrELEeae 811 (1286)
|.....+|+..-
T Consensus 846 ~~~~~~~le~~~ 857 (1201)
T PF12128_consen 846 VKQRRKELEEEL 857 (1201)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 31
>PRK01156 chromosome segregation protein; Provisional
Probab=98.61 E-value=0.0069 Score=77.05 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKL 269 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~ 269 (1286)
..|..-...++..+..++..+..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~ei~~l 185 (895)
T PRK01156 162 NSLERNYDKLKDVIDMLRAEISNI 185 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544443
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.58 E-value=0.0015 Score=79.05 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q psy12517 678 ELNQLREELTQLKKEAQRN 696 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~Qkl 696 (1286)
++.++..-|.+++...|+|
T Consensus 379 el~~~e~~lqEer~E~qkL 397 (546)
T PF07888_consen 379 ELQMLEEHLQEERMERQKL 397 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544
No 33
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.38 E-value=0.018 Score=70.87 Aligned_cols=434 Identities=18% Similarity=0.234 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhHH-HHHhHHHHHHHHHhhHHHHHHHH
Q psy12517 340 AEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMD-EMQDHFREDQADEY-SSLKKELEQTAKNCRILSFKLRK 417 (1286)
Q Consensus 340 ld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmE-ELrDs~rEe~~de~-~eL~KeLheleKncRiLq~kLrK 417 (1286)
.+....+.+.-+..+-+-++.+...-++|.-.-.+-+.||. .++..+ +.+.++ ..+.+++..-+|.|-.|+.++.+
T Consensus 174 yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~--~k~~~leeey~~E~n~kEkqvs~L~~q~~e 251 (786)
T PF05483_consen 174 YEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDY--EKFEDLEEEYKKEVNDKEKQVSLLQTQLKE 251 (786)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444555543333334444444444444444444444443 333332 111111 11278888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12517 418 SERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKT 497 (1286)
Q Consensus 418 aerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~~~ 497 (1286)
-+-.+..+-..++..-+++..|+ +.......-|+.+.+-.-.|..+|+.+...+-
T Consensus 252 Ken~~kdl~~~l~es~~~~~qLe---------E~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq---------------- 306 (786)
T PF05483_consen 252 KENKIKDLLLLLQESQDKCNQLE---------EKTKEQHENLKESNEEQEHLLQELEDIKQSLQ---------------- 306 (786)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH----------------
Confidence 99999988888888888888776 33344445557777776777777766554442
Q ss_pred cchHHHHHHHHHHHH-----------HHHHHHHhcCCCCccccCCCCCCccccchhhhhccCCCCcchhHHhhhhhhHHH
Q psy12517 498 PSVETAEKLQKDLKE-----------ATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSME 566 (1286)
Q Consensus 498 ~a~~~kkKLE~dL~E-----------lE~kle~ank~k~ealkql~K~~~~~k~~~~sl~r~gsqe~~k~lqreLqds~E 566 (1286)
.++...+.|+.+|.- -+.+++..|+.+..--..+..+ +.-+..|+--|...+.
T Consensus 307 ~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~----------------qtti~~L~~lL~~Eqq 370 (786)
T PF05483_consen 307 ESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTEL----------------QTTICNLKELLTTEQQ 370 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
Confidence 112222333333332 3444444443332111111111 2223344444555556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCC-----CCchHHH-----HHHH---HH----------HH---hhhh-------
Q psy12517 567 READLREQLRFAEEERYQRLYSVARDAF-----HPNLVQY-----LQIE---KV----------RA---ESST------- 613 (1286)
Q Consensus 567 re~DLkeQLrfaEEe~~~~~r~~~~~~~-----~~~~~L~-----~Ele---kL----------rs---~ae~------- 613 (1286)
|-.++..||...=-++ ..+...++ ..+..++ ..|. +| .+ ..++
T Consensus 371 r~~~~ed~lk~l~~eL----qkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq 446 (786)
T PF05483_consen 371 RLKKNEDQLKILTMEL----QKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQ 446 (786)
T ss_pred HHHHhHHHHHHHHHHH----HHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777776665554 33222111 0111111 1111 00 00 0111
Q ss_pred ----hHHHHHHHHHhhhhhhhhHHHHHhhhchHHHHHhHHHH-hhhhhhhh---hhhhhhhhHhhhcchhhhhHHHHHHH
Q psy12517 614 ----EKTQITGELESLKSKLSALEAEKKKFETDILEKSSKIT-QLEASIRE---ERERATDLSVKAGSAASRELNQLREE 685 (1286)
Q Consensus 614 ----E~~EL~eELesL~sk~ssLe~eKRKLE~dqLE~eLeE~-q~E~e~~~---~~ER~kKa~~~~~~~~e~q~~qL~eE 685 (1286)
++-+|...+....+.......+.. .|..+|+.. -.+.+... .--..++.++.-++..-..+..++++
T Consensus 447 ~~ekev~dLe~~l~~~~~~eq~yskQVe-----eLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qed 521 (786)
T PF05483_consen 447 IREKEVHDLEIQLTTIKESEQHYSKQVE-----ELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQED 521 (786)
T ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 222232222222222222222222 222222221 11111111 00011111110000111133334444
Q ss_pred HHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhh
Q psy12517 686 LTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKN 765 (1286)
Q Consensus 686 L~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~ 765 (1286)
+..-+.+..++=..-..|+..+.-|+.-|..+--.++.....++.++..-|.--..-.-+.....|.+.-+|.++..|..
T Consensus 522 i~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrK 601 (786)
T PF05483_consen 522 INNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRK 601 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33333322222222223444444443333322222233344455555444444333334555677888888999999999
Q ss_pred hccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHH
Q psy12517 766 QSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEK 825 (1286)
Q Consensus 766 Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev 825 (1286)
|++. +....|+..-|.+|.|+----.+++...-+.-+|+-+++.+-.-|-+.-+.+.+++
T Consensus 602 qvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~kei 663 (786)
T PF05483_consen 602 QVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEI 663 (786)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9997 66777888888888888877778888888888888888877644444444444333
No 34
>PRK01156 chromosome segregation protein; Provisional
Probab=98.34 E-value=0.03 Score=71.44 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 345 EALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEM 382 (1286)
Q Consensus 345 eELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEEL 382 (1286)
.++...+..+...++.+..+++.++.++..+..++..+
T Consensus 207 ~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~~l 244 (895)
T PRK01156 207 ADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNEL 244 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444443333
No 35
>KOG0976|consensus
Probab=98.29 E-value=0.03 Score=69.61 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=56.0
Q ss_pred ccccccccc--CChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHH
Q psy12517 235 TDTTETTLV--NDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENED 312 (1286)
Q Consensus 235 t~~t~~t~v--~~~~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIED 312 (1286)
-.|-+|||. |.+.+.+++.++++++..+..+|-++|-|| ..||.++..++..+..
T Consensus 82 vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ek-----------------------q~lQ~ti~~~q~d~ke 138 (1265)
T KOG0976|consen 82 VSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEK-----------------------QKLQDTIQGAQDDKKE 138 (1265)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHH
Confidence 345567777 889999999999999999999999888665 3456666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12517 313 LNDEKKSLSLRVRELETEAA 332 (1286)
Q Consensus 313 Le~Dkk~L~qrLreLEKKQK 332 (1286)
...+++..+.++..+++...
T Consensus 139 ~etelE~~~srlh~le~eLs 158 (1265)
T KOG0976|consen 139 NEIEIENLNSRLHKLEDELS 158 (1265)
T ss_pred HHHHHHhhHHHHHHHHHHHh
Confidence 66666666666666666544
No 36
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.21 E-value=2.9e-06 Score=105.06 Aligned_cols=106 Identities=19% Similarity=0.274 Sum_probs=56.4
Q ss_pred HHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhhc-cccccccCCccccccccc---CCchhhhhchhhhhHHHHH
Q psy12517 798 QEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQ-KGMWISKRPWSKKRKITT---EPSVAKEEHSKSYQLQTTL 873 (1286)
Q Consensus 798 akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~~-kg~~i~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~ 873 (1286)
.++..|+.++..++ .-.+.+..++..|..++.... .|.. . ..+.+|.. .| .+..+..+..+|+...
T Consensus 503 e~~~~L~~~~~~Le----~e~~~L~~~~~~Le~~l~~~~L~g~~--~---~~~trVL~lr~NP-~~~~~~~k~~~l~~L~ 572 (722)
T PF05557_consen 503 EELNELQKEIEELE----RENERLRQELEELESELEKLTLQGEF--N---PSKTRVLHLRDNP-TSKAEQIKKSTLEALQ 572 (722)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCT----B---TTTEEEEEESS-H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhcccc--C---CCCceeeeeCCCc-HHHHHHHHHHHHHHHH
Confidence 34555666777776 556666666666666654300 1111 0 12234333 33 2344445677888888
Q ss_pred HHHHHHHHHHHhhcCCC----CCCC---------CcHHHHHHHHHHHHHHHhh
Q psy12517 874 QRLTEVAAELKRASQLP----PTPP---------TTEESQNRIRRAAFAAKKS 913 (1286)
Q Consensus 874 ~~l~~~~~~~~~~~~~~----~~~P---------d~eev~~rI~rLe~~m~~l 913 (1286)
+++..+..-|+.+..-. +.+| +...++..|+.++.+|.+|
T Consensus 573 ~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RL 625 (722)
T PF05557_consen 573 AENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRL 625 (722)
T ss_dssp HHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 89998888886544332 2233 2234556666666666555
No 37
>KOG0994|consensus
Probab=98.19 E-value=0.044 Score=70.38 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 729 QTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNR 806 (1286)
Q Consensus 729 EaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrE 806 (1286)
+..|...+++..+-.+--..+...++++|+++-+|+.+... ..++.....+-..+.+..+|+..+......|....+-
T Consensus 1597 ~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l 1676 (1758)
T KOG0994|consen 1597 QQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRL 1676 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554455556888899999999999988776 4577777777777888999999998777778877777
Q ss_pred Hhhhh
Q psy12517 807 YDILE 811 (1286)
Q Consensus 807 LEeae 811 (1286)
++.-.
T Consensus 1677 ~~~r~ 1681 (1758)
T KOG0994|consen 1677 LEKRM 1681 (1758)
T ss_pred HHHHh
Confidence 77655
No 38
>KOG0964|consensus
Probab=98.16 E-value=0.066 Score=68.20 Aligned_cols=116 Identities=20% Similarity=0.299 Sum_probs=64.3
Q ss_pred HHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHH-HHHHHHHHHHHhHHHHHHHHHHH
Q psy12517 400 ELEQTAKNCRILSF-----KLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVE-RIQALEKELKLANETAEKLQKDL 473 (1286)
Q Consensus 400 eLheleKncRiLq~-----kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~-~I~eLEreLk~akEvs~rLq~eL 473 (1286)
..+++.|+.|+|+| ++.++-..+++++..+..+=.+-...-+ .+++++ .+.+|..+|...+..-..|..+.
T Consensus 212 ~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~---~~~~~~d~~~~~~~~i~ele~~l~~l~~ek 288 (1200)
T KOG0964|consen 212 KYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYID---ALDKVEDESEDLKCEIKELENKLTNLREEK 288 (1200)
T ss_pred HHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34788999999998 5777778888887665543211111100 011111 23555555555555555555555
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCC
Q psy12517 474 KEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKT 534 (1286)
Q Consensus 474 eelEekle~e~~~~~~~l~~~~~~~a~~~kkKLE~dL~ElE~kle~ank~k~ealkql~K~ 534 (1286)
+.+++.. +.....+-+|+-+++.+..++..-..++..++..+.++
T Consensus 289 eq~~a~~----------------t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~ 333 (1200)
T KOG0964|consen 289 EQLKARE----------------TKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKV 333 (1200)
T ss_pred HHHHHHH----------------HHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHH
Confidence 5544332 24444556677777777777766655555555544444
No 39
>KOG0612|consensus
Probab=98.15 E-value=0.012 Score=75.82 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q psy12517 367 EMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGV 446 (1286)
Q Consensus 367 ELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv 446 (1286)
+++...++|.+.+..++... .++ ++ +-..++|.+....++++.+.++.+..++
T Consensus 462 ~~~~~~keL~e~i~~lk~~~-----~el---~~------~q~~l~q~~~ke~~ek~~~~~~~~~~l~------------- 514 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEE-----SEL---QR------EQKALLQHEQKEVEEKLSEEEAKKRKLE------------- 514 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHH-----HHH---HH------HHHHHHHHhhhHHHHHHHHHHHHHHHHH-------------
Confidence 55566667777777666665 444 43 4456788888888888888877666543
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy12517 447 NKVERIQALEKELKLANETAEKLQKDLKEA 476 (1286)
Q Consensus 447 ~~~~~I~eLEreLk~akEvs~rLq~eLeel 476 (1286)
..+++++.+|+.+..+..+++..++.+
T Consensus 515 ---~~~~~~~eele~~q~~~~~~~~~~~kv 541 (1317)
T KOG0612|consen 515 ---ALVRQLEEELEDAQKKNDNAADSLEKV 541 (1317)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 356788888888877776666655544
No 40
>KOG4643|consensus
Probab=98.14 E-value=0.045 Score=69.73 Aligned_cols=248 Identities=19% Similarity=0.241 Sum_probs=118.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhhhHHHHHhhh
Q psy12517 560 DLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKF 639 (1286)
Q Consensus 560 eLqds~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs~ae~E~~EL~eELesL~sk~ssLe~eKRKL 639 (1286)
.+++..+...-|.+--...|+.+ +.++.+. |.-.++.++.+|. +.++.|+.+.....+++.-|-.++-.|
T Consensus 265 RveelkedN~vLleekeMLeeQL-q~lrars-----e~~tleseiiqlk----qkl~dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 265 RVEELKEDNRVLLEEKEMLEEQL-QKLRARS-----EGATLESEIIQLK----QKLDDMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-HHHHhcc-----ccCChHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34444444455555555555555 5555522 2222445555444 344455555555555555555555555
Q ss_pred chH--HHHH---------hHHHHhhhhhhhh----hhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHH------HHHh--
Q psy12517 640 ETD--ILEK---------SSKITQLEASIRE----ERERATDLSVKAGSAASRELNQLREELTQLKKE------AQRN-- 696 (1286)
Q Consensus 640 E~d--qLE~---------eLeE~q~E~e~~~----~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~------~Qkl-- 696 (1286)
... +|.. +.++..++.-..+ |.+|+-|+.. +.-.+...|.+-|+. ++++
T Consensus 335 q~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllL--------Enrrlt~tleelqsss~Ee~~SK~lel 406 (1195)
T KOG4643|consen 335 QVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLL--------ENRRLTGTLEELQSSSYEELISKHLEL 406 (1195)
T ss_pred HHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHH--------HhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 422 3322 2222222221111 5677777755 555666666666655 4555
Q ss_pred HHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHH---HHHHhhhhH
Q psy12517 697 AEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKS--------------LTAEQKQKALKE---KELKTKESE 759 (1286)
Q Consensus 697 E~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEee--------------Le~EqRek~ea~---K~~RK~ERr 759 (1286)
+...+.|+..++.|+.++..+-.+ .+.|+..-.-|-.+ ++..++++.... -..+.++..
T Consensus 407 eke~KnLs~k~e~Leeri~ql~qq----~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~e 482 (1195)
T KOG4643|consen 407 EKEHKNLSKKHEILEERINQLLQQ----LAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAE 482 (1195)
T ss_pred HHHhHhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455588999999999998777443 33333322222222 222222222211 111222222
Q ss_pred HHHhhhhcccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 760 INVLKNQSSDNVTKQITELK---TQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 760 IKEL~~Q~eekn~~rlqEl~---KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
..+|..++.. -.+.+++-. --+--..+++.++.......|.++-..|++++ ...-.+++++.-|..+...
T Consensus 483 t~el~~~ikn-lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe----~~l~~lE~ENa~LlkqI~~ 555 (1195)
T KOG4643|consen 483 TEELLNQIKN-LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELE----ELLGNLEEENAHLLKQIQS 555 (1195)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHH
Confidence 2222222111 000111111 11222344555556666666777777777777 6666666666666665544
No 41
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.14 E-value=0.00074 Score=73.91 Aligned_cols=221 Identities=21% Similarity=0.313 Sum_probs=119.5
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhhhHHH
Q psy12517 555 TVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEA 634 (1286)
Q Consensus 555 k~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs~ae~E~~EL~eELesL~sk~ssLe~ 634 (1286)
..++.+++++.++..++..+|..++.++ . .+..++..+...+..|+.
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~----~-----------------------------~aE~e~~~l~rri~~lE~ 50 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRA----E-----------------------------KAEAEVASLQRRIQLLEE 50 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----------------------------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----------------------------HHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666665555554 1 222333344444444444
Q ss_pred HHhhhchH--HHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHH
Q psy12517 635 EKKKFETD--ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEE 712 (1286)
Q Consensus 635 eKRKLE~d--qLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~ 712 (1286)
...+.+.+ .....|.++...+.... |..+....-....+.-+..|...|......+...+.--....+.+..++.
T Consensus 51 ~le~~eerL~~~~~kL~~~e~~~de~e---r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~ 127 (237)
T PF00261_consen 51 ELERAEERLEEATEKLEEAEKRADESE---RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQ 127 (237)
T ss_dssp CCHHHHCCCCHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 44444444444444443 33333332111223345556666666555555555555555566666666
Q ss_pred hhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHHHHHHHHHHH
Q psy12517 713 NLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITELKTQYEQEIK 787 (1286)
Q Consensus 713 RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlE 787 (1286)
.|..++.-+ -..|..|+..|..+.+.|.+-.-.-..+......+|.+|+.|..++.+ .-+.-..-.++.|.++|+
T Consensus 128 ~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id 207 (237)
T PF00261_consen 128 ELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEID 207 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655543 223444444444444444443333344555556666677776666665 223444444577788888
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhh
Q psy12517 788 KLEDTLVQERQEYEDLTNRYDILE 811 (1286)
Q Consensus 788 EaEEea~~~~akyRKLQrELEeae 811 (1286)
.++..+.....+|..++.+|+..-
T Consensus 208 ~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 208 RLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887643
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.09 E-value=0.065 Score=65.54 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
.++.+++-+.+..|+-++..++.++++++.++.+.+..+..|.
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888889999999999999999999988877666664
No 43
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.07 E-value=0.026 Score=70.94 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy12517 247 EYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRE 326 (1286)
Q Consensus 247 ~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLre 326 (1286)
-|..+|..||.+|..++. .|.| ||--.++-+.+.++..++|..+++.-..|+..+-.+..-+..-.+.+..
T Consensus 422 rLE~dvkkLraeLq~~Rq----~E~E-----LRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~ 492 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQ----SEQE-----LRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQ 492 (697)
T ss_pred HHHHHHHHHHHHHHhhhh----hHHH-----HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888777 3333 4443333344778899999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy12517 327 LETEAAAF 334 (1286)
Q Consensus 327 LEKKQKkf 334 (1286)
||++....
T Consensus 493 LEkrL~eE 500 (697)
T PF09726_consen 493 LEKRLAEE 500 (697)
T ss_pred HHHHHHHH
Confidence 99998733
No 44
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.03 E-value=0.082 Score=64.46 Aligned_cols=200 Identities=27% Similarity=0.333 Sum_probs=129.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHH----
Q psy12517 244 NDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKS---- 319 (1286)
Q Consensus 244 ~~~~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~---- 319 (1286)
+..+.+.++..++.++..++.+..-+|.+|.++| ++|....+.+.+|...|+........
T Consensus 28 ~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l----------------~ELe~akr~veel~~kLe~~~~~~~~a~~~ 91 (522)
T PF05701_consen 28 RVKEKETELEKAQEELAKLKEQLEAAEREKAQAL----------------SELESAKRTVEELKLKLEKAQAEEKQAEED 91 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456888999999999999999999999999876 35555566666666666655544433
Q ss_pred ---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy12517 320 ---LSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSS 396 (1286)
Q Consensus 320 ---L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~e 396 (1286)
...++..++... .+......+.+|..+...|......|...+.++..++.++..+.+.. .-=+.+..+
T Consensus 92 ~e~~k~r~~e~e~~~--------~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k-~~A~~~aee 162 (522)
T PF05701_consen 92 SELAKFRAKELEQGI--------AEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAK-NAALKQAEE 162 (522)
T ss_pred hHHhHHHHHHHhhhh--------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 333333443321 11111226677888888888899999999999999999988887654 111133333
Q ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy12517 397 LKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDL 473 (1286)
Q Consensus 397 L~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eL 473 (1286)
..+......+..-+|..++..+..-++-+.......+.....+. ....+.+..++..|+.+++.-.+|..++
T Consensus 163 a~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~-----~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 163 AVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIA-----AEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777777777776555444444443332 1121334566666666666666666665
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.02 E-value=0.18 Score=68.15 Aligned_cols=82 Identities=11% Similarity=0.153 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhh----------hccc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 729 QTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKN----------QSSD-NVTKQITELKTQYEQEIKKLEDTLVQER 797 (1286)
Q Consensus 729 EaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~----------Q~ee-kn~~rlqEl~KqyKRQlEEaEEea~~~~ 797 (1286)
|.+|..|..+.+...-.++.+.-.+++++|=.-.+.. ..+. -....++....++.|++..+++...+..
T Consensus 785 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 864 (1486)
T PRK04863 785 EKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQR 864 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888877778887774443331 1121 2234444444556666666666666666
Q ss_pred HHHHHHHhhHhhh
Q psy12517 798 QEYEDLTNRYDIL 810 (1286)
Q Consensus 798 akyRKLQrELEea 810 (1286)
..+..+...+.-+
T Consensus 865 ~~~~~~~~~~~~l 877 (1486)
T PRK04863 865 SQLEQAKEGLSAL 877 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555555444
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.98 E-value=0.055 Score=60.77 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=26.0
Q ss_pred chhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 553 DPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYS 588 (1286)
Q Consensus 553 ~~k~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~ 588 (1286)
++..+.+++++..-...||..++...++++ ..++.
T Consensus 104 el~~lrk~ld~~~~~r~~le~~i~~L~eEl-~fl~~ 138 (312)
T PF00038_consen 104 ELESLRKDLDEETLARVDLENQIQSLKEEL-EFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHhhhhhhhhhhhhhHhHHHHHHHHHHHHH-HHHHh
Confidence 445555778888888888888888888887 55554
No 47
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.97 E-value=0.22 Score=67.43 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHhhhhccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy12517 728 LQTKCSTLEKSLTAEQKQK---ALKEKELKTKESEINVLKNQSSD-----NVTKQITELKTQYEQEIKKLEDTLVQER-Q 798 (1286)
Q Consensus 728 LEaRI~eLEeeLe~EqRek---~ea~K~~RK~ERrIKEL~~Q~ee-----kn~~rlqEl~KqyKRQlEEaEEea~~~~-a 798 (1286)
|-.||.++++++..-..-. ....+.+..+|..|..|.+--+. ....+.+...++++.|+--+.+-.++-. =
T Consensus 892 ~~~~~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 971 (1486)
T PRK04863 892 LADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHF 971 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777765322221 33666777777777777664222 1122222222556666666655544322 2
Q ss_pred HHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHH
Q psy12517 799 EYEDLTNRYDILEGEHVDIKASLVKEKENNHG 830 (1286)
Q Consensus 799 kyRKLQrELEeae~~~vE~ad~lE~ev~kLrs 830 (1286)
.|.+.+.-|.+-. +..+.++..+..+..
T Consensus 972 ~y~~~~~~l~~~~----~~~~~Le~~Le~iE~ 999 (1486)
T PRK04863 972 SYEDAAEMLAKNS----DLNEKLRQRLEQAEQ 999 (1486)
T ss_pred cHHHHHhHhhcch----hhhHHHHHHHHHHHH
Confidence 2666666665555 555555555544443
No 48
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.95 E-value=9.5e-05 Score=91.96 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHH
Q psy12517 681 QLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKS 716 (1286)
Q Consensus 681 qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E 716 (1286)
.+.+++...+..+..|+.....|+.++..|+.+|..
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666777777777777777777777765
No 49
>PF13514 AAA_27: AAA domain
Probab=97.93 E-value=0.21 Score=65.77 Aligned_cols=196 Identities=21% Similarity=0.261 Sum_probs=111.4
Q ss_pred ccccccc-CChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHH-HH-------hhhccccc--cCcCcHHHHHHHHHHHHH
Q psy12517 237 TTETTLV-NDNEYSDQIDLLRHELDNMKAKCEKLEREKSDIL-LR-------RLASMETT--TSKTTASELLKLQQRVNE 305 (1286)
Q Consensus 237 ~t~~t~v-~~~~~~~~i~~lr~el~~~k~rce~~e~eks~il-lr-------rl~~~~t~--~~~t~~sELekLQKklnE 305 (1286)
.++..+. .-...+.++..|+.++..+..+..++++-+.-|= ++ .|+.+... -.......+..+...+..
T Consensus 174 ~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~ 253 (1111)
T PF13514_consen 174 AEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAE 253 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHH
Confidence 3344444 2245666777777777777776666666544332 22 24433222 123445666666666666
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 306 LKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDH 385 (1286)
Q Consensus 306 LQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs 385 (1286)
++..+..+..++..+...+..+.-... +-.....|.. |......|......+..++.++..+..++..+...
T Consensus 254 ~~~~l~~~~~~~~~l~~~~~~l~~~~~----ll~~~~~I~~----L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~ 325 (1111)
T PF13514_consen 254 AQAQLERLQEELAQLEEELDALPVDEE----LLAHAAEIEA----LEEQRGEYRKARQDLPRLEAELAELEAELRALLAQ 325 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHH----HHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666555555433221 1112222333 34445556666777777777777777777777766
Q ss_pred hhhh----hh---hHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 386 FRED----QA---DEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 386 ~rEe----~~---de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
+..+ ++ +-....+..+..+......|...+..++..+.+++.++..+......+.
T Consensus 326 lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 387 (1111)
T PF13514_consen 326 LGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAELAALP 387 (1111)
T ss_pred cCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 6411 11 1111234566666667777777777777777777777777766665554
No 50
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.90 E-value=0.075 Score=59.74 Aligned_cols=83 Identities=17% Similarity=0.304 Sum_probs=62.7
Q ss_pred hhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHH
Q psy12517 388 EDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAE 467 (1286)
Q Consensus 388 Ee~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~ 467 (1286)
+.++.++ ++.|+.+.+....|+.++..+...++.+...+...-..+..++ ..|..|-.+|..+.-.+.
T Consensus 53 e~el~~l---r~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le---------~el~~lrk~ld~~~~~r~ 120 (312)
T PF00038_consen 53 EEELREL---RRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLE---------EELESLRKDLDEETLARV 120 (312)
T ss_dssp HHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHh---HHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhhhhhhhhhhhhHh
Confidence 4444444 8899999999999999999888888888776666655555554 356677777777777888
Q ss_pred HHHHHHHHHHHHHHH
Q psy12517 468 KLQKDLKEATDKLER 482 (1286)
Q Consensus 468 rLq~eLeelEekle~ 482 (1286)
.|+.++..+++.+.+
T Consensus 121 ~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 121 DLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999888753
No 51
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.87 E-value=0.018 Score=63.23 Aligned_cols=140 Identities=24% Similarity=0.360 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc----cc--CcCcHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMET----TT--SKTTASELLKLQQRVNELKTENEDLNDEKKS 319 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t----~~--~~t~~sELekLQKklnELQqEIEDLe~Dkk~ 319 (1286)
+++.+.+..+...|.....+.+.+|-+-. =|-||+..++. +. -.++...|..+++...+.......+++....
T Consensus 11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~-~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~ 89 (237)
T PF00261_consen 11 DEAEERLEEAEEKLKEAEKRAEKAEAEVA-SLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQS 89 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34555666666666666666666665544 34566555433 11 1122333444444444444444444444444
Q ss_pred HHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 320 LSLRVRELETEAA-AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 320 L~qrLreLEKKQK-kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
...++..|+...+ ....+.+++....++..++..++..++.+.+..+.++..+..|..++..+...+
T Consensus 90 ~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 90 DEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 4444444444433 222333344444444444445555555555555555555555555444444444
No 52
>KOG0971|consensus
Probab=97.83 E-value=0.23 Score=63.09 Aligned_cols=124 Identities=22% Similarity=0.322 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVR 325 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLr 325 (1286)
.+|..|+..|...|+.++-+ |.| .|.. |+.|--| .=++..++.=+..+.+.+-+++-++...+..++
T Consensus 227 ~eLr~QvrdLtEkLetlR~k--R~E-Dk~K--l~Elekm--------kiqleqlqEfkSkim~qqa~Lqrel~raR~e~k 293 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLK--RAE-DKAK--LKELEKM--------KIQLEQLQEFKSKIMEQQADLQRELKRARKEAK 293 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhh--hhh-hHHH--HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888753 111 2222 2222111 124556666666777777777777776666666
Q ss_pred HHHHHHH-hhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 326 ELETEAA-AFKKSNAAEREAEALR-------TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEM 382 (1286)
Q Consensus 326 eLEKKQK-kfdk~eEld~sieELR-------TKLlsLE~alEEL~EeLEELKrE~KELReEmEEL 382 (1286)
.+..-+. .......+..+++=+. ++..++...++-+.+.+++++-.++=|++||++.
T Consensus 294 eaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 294 EAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5544322 1122222222233222 3344455555555555555555555555555544
No 53
>KOG0994|consensus
Probab=97.80 E-value=0.29 Score=63.45 Aligned_cols=52 Identities=19% Similarity=0.141 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 779 KTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 779 ~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
.++++...+++=-+++..+.....|+.+|++-+ .+-+....++.-|.+++++
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~----~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNE----QALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHhhhHHHHHHH
Confidence 367777777777788888888888888888877 6666666777777777766
No 54
>KOG0976|consensus
Probab=97.77 E-value=0.26 Score=61.97 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHH----HhHHHHHhHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 679 LNQLREELTQLKKEAQ----RNAEKVTKLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKALKEK 751 (1286)
Q Consensus 679 ~~qL~eEL~~Eqe~~Q----klE~~rk~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K 751 (1286)
+..++++|..++.+.. ..+..++-|+..|+.|...+..+-... +..+-.+-.++.+|| +.|..+.-
T Consensus 293 Vk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLE-------Kkrd~al~ 365 (1265)
T KOG0976|consen 293 VKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELE-------KKRDMALM 365 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH-------HHHHHHHH
Confidence 5667777777777643 346777778877777777765554443 222333344445554 55666555
Q ss_pred HHHhh
Q psy12517 752 ELKTK 756 (1286)
Q Consensus 752 ~~RK~ 756 (1286)
.+|++
T Consensus 366 dvr~i 370 (1265)
T KOG0976|consen 366 DVRSI 370 (1265)
T ss_pred hHHHH
Confidence 55543
No 55
>KOG0978|consensus
Probab=97.73 E-value=0.3 Score=61.40 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKALKEKELK 754 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~R 754 (1286)
+..+|-.+|++--+..-++=..+-...+.++-|......++..+ +.++..+..+|..||+++..-+ ....
T Consensus 469 qn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt-------~~~~ 541 (698)
T KOG0978|consen 469 QNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLT-------SNES 541 (698)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------Hhhh
Confidence 45566666666555555665666777788899998888888766 7888999999999998877544 4445
Q ss_pred hhhhHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhh
Q psy12517 755 TKESEINVLKNQSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRL 832 (1286)
Q Consensus 755 K~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrskl 832 (1286)
++..+++-++..++. +++.-+......++-+++..+..+.+....|..+-.+++... --+-.++.++..|+.++
T Consensus 542 ~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~----~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 542 KLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK----FKRKRLEEELERLKRKL 617 (698)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 555555555554544 334444444455555566666666666666666666666655 45567788889999898
Q ss_pred hh
Q psy12517 833 QQ 834 (1286)
Q Consensus 833 r~ 834 (1286)
.+
T Consensus 618 e~ 619 (698)
T KOG0978|consen 618 ER 619 (698)
T ss_pred HH
Confidence 88
No 56
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.70 E-value=0.27 Score=60.07 Aligned_cols=134 Identities=14% Similarity=0.258 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKAL------ 748 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~e------ 748 (1286)
.+..+..||...+..++.....-..|...+.-|+..|...-... +.........|..|+.+|..-+.+-..
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 35667777777777777766666666666666666665554433 222333344444444444433333222
Q ss_pred -HHHHHHhhhhHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy12517 749 -KEKELKTKESEINVLKNQSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILE 811 (1286)
Q Consensus 749 -a~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae 811 (1286)
+...+-.+-..|..+...++. +...-++.-+..++.+++.+.-.+.....+++-++.+++.+-
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaK 427 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAK 427 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333344444444433 233334444456666677777777777777777777777665
No 57
>PF13514 AAA_27: AAA domain
Probab=97.63 E-value=0.56 Score=61.94 Aligned_cols=93 Identities=31% Similarity=0.343 Sum_probs=67.9
Q ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHH----------HHHHHHHHHH
Q psy12517 290 KTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAA---EREAEA----------LRTKLAAAEG 356 (1286)
Q Consensus 290 ~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEl---d~sieE----------LRTKLlsLE~ 356 (1286)
...++.+..+.+.+..++.++.++..++..++.....|+.-....+...+. ...+.. ...++..+..
T Consensus 170 ~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~ 249 (1111)
T PF13514_consen 170 EVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEE 249 (1111)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHH
Confidence 456889999999999999999999999999999999998877755533333 333331 1256666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 357 LCEELMDENEEMKKELRYLEEEMDEM 382 (1286)
Q Consensus 357 alEEL~EeLEELKrE~KELReEmEEL 382 (1286)
.+..+...++.+...+..+..+++.+
T Consensus 250 ~~~~~~~~l~~~~~~~~~l~~~~~~l 275 (1111)
T PF13514_consen 250 ELAEAQAQLERLQEELAQLEEELDAL 275 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66677777777777777777766655
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.63 E-value=0.0018 Score=80.93 Aligned_cols=52 Identities=23% Similarity=0.179 Sum_probs=34.1
Q ss_pred chhHHhhhhhhHHHHHHHHHHHHH---HHHHHHHHHhhhhhccCCCCchHHHHHHHHHH
Q psy12517 553 DPTVLMRDLQDSMEREADLREQLR---FAEEERYQRLYSVARDAFHPNLVQYLQIEKVR 608 (1286)
Q Consensus 553 ~~k~lqreLqds~Ere~DLkeQLr---faEEe~~~~~r~~~~~~~~~~~~L~~ElekLr 608 (1286)
+++.|+.+|+.++..+.||+-|+. -.|+.+ +.-+..+..+|+.|+.++-.|.
T Consensus 426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~l----k~eL~qlr~ene~Lq~Kl~~L~ 480 (697)
T PF09726_consen 426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSL----KSELSQLRQENEQLQNKLQNLV 480 (697)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhccccchHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999988999998844 334443 5544444455555555555553
No 59
>KOG4643|consensus
Probab=97.62 E-value=0.49 Score=60.92 Aligned_cols=76 Identities=25% Similarity=0.359 Sum_probs=49.6
Q ss_pred ccccccc--CChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHH
Q psy12517 237 TTETTLV--NDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLN 314 (1286)
Q Consensus 237 ~t~~t~v--~~~~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe 314 (1286)
+++.-|| +...|..+|.-|+.-+..+++..| ||++.|++ + -++|+.++..+..|.+++.+..
T Consensus 162 ~sp~~~~~~~~~hL~velAdle~kir~LrqElE----EK~enll~-l-----------r~eLddleae~~klrqe~~e~l 225 (1195)
T KOG4643|consen 162 KSPYDIVVKKNLHLEVELADLEKKIRTLRQELE----EKFENLLR-L-----------RNELDDLEAEISKLRQEIEEFL 225 (1195)
T ss_pred CCcchhhcchhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-H-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455 556888888888888887777443 67765544 3 2567777777777777777777
Q ss_pred HHHHHHHHHHHHHH
Q psy12517 315 DEKKSLSLRVRELE 328 (1286)
Q Consensus 315 ~Dkk~L~qrLreLE 328 (1286)
.+.++..-....+.
T Consensus 226 ~ea~ra~~yrdeld 239 (1195)
T KOG4643|consen 226 DEAHRADRYRDELD 239 (1195)
T ss_pred HHHHhhhhhhhHHH
Confidence 77666555444443
No 60
>KOG0250|consensus
Probab=97.60 E-value=0.56 Score=61.03 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHH
Q psy12517 676 SRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKS 738 (1286)
Q Consensus 676 e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEee 738 (1286)
+.....|..++..++.....++..+...+..+++++.++..+-..- ++.+.++..++.+|++.
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~ 725 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT 725 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4456667777766777666677777777777777777766655433 67788888888888873
No 61
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.58 E-value=0.27 Score=60.61 Aligned_cols=110 Identities=13% Similarity=0.148 Sum_probs=71.3
Q ss_pred chhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhcCCcchhhhhhHhH-HHHHHhhcC----CCcccchhhhhhHHH
Q psy12517 921 TGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSI-DDAYENVKY----TNYGRRETSMDRLEA 995 (1286)
Q Consensus 921 Eyd~V~~rl~el~s~r~~~Ls~Ere~IlErIeq~ek~kkd~~sfM~sfeaI-nkIf~~LS~----G~~geLe~~~~~l~~ 995 (1286)
-|..+...+.++...... +..+...+.+.+..+++.-...+..+..|... ..|.+.|.- |
T Consensus 373 ~yS~i~~~l~~~~~~l~~-ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPG-------------- 437 (560)
T PF06160_consen 373 PYSEIQEELEEIEEQLEE-IEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPG-------------- 437 (560)
T ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--------------
Confidence 466666666666666666 66666667777777776666666666666542 224444432 3
Q ss_pred HHHhhhhhHHHHHHhhhhhhhhhhHHHHHHHhHHHHhhhhhhhHHHHHHHhHHHHhhhhhc
Q psy12517 996 EEKARKSDVAAVKMRYDKRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTIADLKAS 1056 (1286)
Q Consensus 996 ~e~~~k~~~a~~~~ry~~~~~~~~~e~~~~~~~~~r~kr~rd~~k~~le~aq~~~~~~k~~ 1056 (1286)
.--.|...+...+++|..+..++.+..=+=|.-.+.|+.|+..|..|...
T Consensus 438 -----------lp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~ 487 (560)
T PF06160_consen 438 -----------LPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEK 487 (560)
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 12346667777777777777777777777777777777777777776654
No 62
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.56 E-value=1.7e-05 Score=98.28 Aligned_cols=272 Identities=24% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHH---HHhhHHHHHHHHH
Q psy12517 342 REAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTA---KNCRILSFKLRKS 418 (1286)
Q Consensus 342 ~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLhele---KncRiLq~kLrKa 418 (1286)
..++.++.+++.++...+++...++.++.++..|+.+.++|...- .+++.|+-+|+.+- --+-.|+..+.+.
T Consensus 246 ~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A-----~~a~~LrDElD~lR~~a~r~~klE~~ve~Y 320 (713)
T PF05622_consen 246 AQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEA-----REARALRDELDELREKADRADKLENEVEKY 320 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555666666666666655555433 23333333333321 1233466666666
Q ss_pred HHHHHHHHHHHH---HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHhcCCCCCCCC
Q psy12517 419 ERRSEQLEAEKL---EAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQ---KDLKEATDKLERANGGKPPKLG 492 (1286)
Q Consensus 419 erk~EElE~E~~---~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq---~eLeelEekle~e~~~~~~~l~ 492 (1286)
..+++++.+=+. .++..+..+. +.+..||.+|+.+...+..++ +++-+++.++..+.
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~---------e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~-------- 383 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLL---------ETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEES-------- 383 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 666666543222 2222222221 456788888866655544433 25555555554322
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCccccchhhhhccCCCCcchhHHhhhhhhHHHHHHHHH
Q psy12517 493 ALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLR 572 (1286)
Q Consensus 493 ~~~~~~a~~~kkKLE~dL~ElE~kle~ank~k~ealkql~K~~~~~k~~~~sl~r~gsqe~~k~lqreLqds~Ere~DLk 572 (1286)
....+++.++..++.+++.+.+.+.........+.+. +.. | + .++.+...+...-..+-.....|.
T Consensus 384 --------~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~--~ee--L-~-~~~~~~~~l~~~~~~~~~~~~~l~ 449 (713)
T PF05622_consen 384 --------RRADKLEFENKQLEEKLEALEEEKERLQEERDSLRET--NEE--L-E-CSQAQQEQLSQSGEESSSSGDNLS 449 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--h-h-hccccccccccccccccccccchh
Confidence 1223445555555555555444433332222222111 000 0 0 000000000000000001111111
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhhhHHHHHhhhchH--HHHHhHHH
Q psy12517 573 EQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETD--ILEKSSKI 650 (1286)
Q Consensus 573 eQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs~ae~E~~EL~eELesL~sk~ssLe~eKRKLE~d--qLE~eLeE 650 (1286)
..+.. ..++.++..+++||..|...++... ...+..|...++..+..+..|..+++....+ .|+..+++
T Consensus 450 ~El~~------~~l~erl~rLe~ENk~Lk~~~e~~~---~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~ 520 (713)
T PF05622_consen 450 AELNP------AELRERLLRLEHENKRLKEKQEESE---EEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEE 520 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccc------hHHHHHHHHHHHHHHHHHHHhccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1235556667778887766655442 1122345556666666666666666555433 55667776
Q ss_pred Hhhhhhhh
Q psy12517 651 TQLEASIR 658 (1286)
Q Consensus 651 ~q~E~e~~ 658 (1286)
.+..+...
T Consensus 521 lq~~l~~~ 528 (713)
T PF05622_consen 521 LQKSLQEQ 528 (713)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 66655443
No 63
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.55 E-value=0.25 Score=61.68 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 725 ISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQEYED 802 (1286)
Q Consensus 725 I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~akyRK 802 (1286)
-..|..-+..|+..+-.-.+++++..-.+.++|-.+--|..-++- ..+.-|+-+-..+|+.--+.++.+.+.......
T Consensus 409 h~aLq~amekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ly~~qr~~~k~r~~e~~~~i~~l~~~~e~ 488 (617)
T PF15070_consen 409 HQALQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEYITLYQSQRAVLKQRHQEKEEYISRLAQDREE 488 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhhhccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 445555666677777777789999988899998887766555543 334445555566777788888888888888888
Q ss_pred HHhhHhhhh
Q psy12517 803 LTNRYDILE 811 (1286)
Q Consensus 803 LQrELEeae 811 (1286)
+.-+|.++-
T Consensus 489 mk~kl~elq 497 (617)
T PF15070_consen 489 MKVKLLELQ 497 (617)
T ss_pred HHHHHHHHH
Confidence 888888876
No 64
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.66 Score=60.05 Aligned_cols=136 Identities=26% Similarity=0.303 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 299 LQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEE 378 (1286)
Q Consensus 299 LQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReE 378 (1286)
....+..+...+..++...+.+......+................+..+...+..+...+..+...++.+...+..+...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 351 (908)
T COG0419 272 REEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554443332333444445555555666666666666665555555555444
Q ss_pred HHHHHhhhhhhhhhHH-HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 379 MDEMQDHFREDQADEY-SSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREV 439 (1286)
Q Consensus 379 mEELrDs~rEe~~de~-~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrl 439 (1286)
..+...-. ... ..++..+.++.+-++.....+...+.++.++-+++.....++..+
T Consensus 352 ~~~~~~~~-----~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (908)
T COG0419 352 KNELAKLL-----EERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI 408 (908)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333 111 112444555555555444444455555555555554444444443
No 65
>KOG0612|consensus
Probab=97.51 E-value=0.76 Score=60.35 Aligned_cols=83 Identities=23% Similarity=0.281 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKE 757 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~E 757 (1286)
++..|...+...+....++.+..+.+...+..|+..|+ .|..++-. +..-++..+.+++. ..+.|.+.++.
T Consensus 729 e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LE-qe~~~r~~---~~~eLssq~~~~~t-----~~~Ekq~~~~~ 799 (1317)
T KOG0612|consen 729 ELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLE-QEISKRLS---LQRELKSQEQEVNT-----KMLEKQLKKLL 799 (1317)
T ss_pred HHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHH-HHHHHhhh---hHHHhhhHHHhhcc-----HHHHHHHHHHH
Confidence 67788888888888888888888888888999998884 44443211 12222333333333 34556666666
Q ss_pred hHHHHhhhhccc
Q psy12517 758 SEINVLKNQSSD 769 (1286)
Q Consensus 758 RrIKEL~~Q~ee 769 (1286)
..+.+++.|++.
T Consensus 800 ~~l~~~K~~~e~ 811 (1317)
T KOG0612|consen 800 DELAELKKQLEE 811 (1317)
T ss_pred HHHHHHHHHHHH
Confidence 677777666663
No 66
>KOG0977|consensus
Probab=97.45 E-value=0.59 Score=57.56 Aligned_cols=125 Identities=21% Similarity=0.271 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy12517 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAE 428 (1286)
Q Consensus 349 TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E 428 (1286)
.++..+...+++.......++.++..|+.++++++..+ ++-......-+..++......=-|+.++.=+.+.+.-+|++
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~-~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e 170 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKL-EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE 170 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 56667777888888888888888888888887777777 11111111112222222222223333333344444444444
Q ss_pred HHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy12517 429 KLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERA 483 (1286)
Q Consensus 429 ~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekle~e 483 (1286)
+..+-....+|. ..|..+=..|....-.++.+|+.+..|-++++.-
T Consensus 171 ~~~Lk~en~rl~---------~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~ 216 (546)
T KOG0977|consen 171 LKRLKAENSRLR---------EELARARKQLDDETLLRVDLQNRVQTLLEELAFL 216 (546)
T ss_pred HHHHHHHhhhhH---------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 443333333332 1222222222333345677777777776666543
No 67
>KOG0978|consensus
Probab=97.44 E-value=0.69 Score=58.32 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=31.5
Q ss_pred cccCccccccccccccCC--h-------hhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy12517 228 SLAGTETTDTTETTLVND--N-------EYSDQIDLLRHELDNMKAKCEKLEREK 273 (1286)
Q Consensus 228 ~~~~~~~t~~t~~t~v~~--~-------~~~~~i~~lr~el~~~k~rce~~e~ek 273 (1286)
+..++-|+.+|+.-.+++ + -...+|+.|+..+..+...|.+.+-+.
T Consensus 136 ~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l 190 (698)
T KOG0978|consen 136 SLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVEL 190 (698)
T ss_pred ccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777777633 2 345677888888888888888877666
No 68
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=97.44 E-value=0.00017 Score=70.02 Aligned_cols=42 Identities=29% Similarity=0.324 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHH
Q psy12517 567 READLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRA 609 (1286)
Q Consensus 567 re~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs 609 (1286)
+.+||+|||+|+|+++ ..||+++.+++.+|+.|..+|.++++
T Consensus 2 ~~aeLR~qLqFvEEEa-~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 2 DSAELRRQLQFVEEEA-ELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999 99999999999999999999999987
No 69
>KOG4673|consensus
Probab=97.42 E-value=0.68 Score=57.71 Aligned_cols=130 Identities=16% Similarity=0.203 Sum_probs=67.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCccccchhhhhccCCCCcchhHHhhhhhhHH-----------H
Q psy12517 498 PSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSM-----------E 566 (1286)
Q Consensus 498 ~a~~~kkKLE~dL~ElE~kle~ank~k~ealkql~K~~~~~k~~~~sl~r~gsqe~~k~lqreLqds~-----------E 566 (1286)
.+++..-.+++.+.+|...|..|-+...+...++.-++. +-| | ||-.||+.|.-.. +
T Consensus 602 ~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTr------PLl-R-----QIE~lQ~tl~~~~tawereE~~l~~ 669 (961)
T KOG4673|consen 602 QAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTR------PLL-R-----QIEALQETLSKAATAWEREERSLNE 669 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------HHH-H-----HHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 345667778888888888888777666666666665421 111 0 3333444333111 2
Q ss_pred HHHHHHHHHHHH-------HHHHHHHhhhhhccCCCCchHHHHHHHHHHHhhhh----------hHHHHHHHHHhhhhhh
Q psy12517 567 READLREQLRFA-------EEERYQRLYSVARDAFHPNLVQYLQIEKVRAESST----------EKTQITGELESLKSKL 629 (1286)
Q Consensus 567 re~DLkeQLrfa-------EEe~~~~~r~~~~~~~~~~~~L~~ElekLrs~ae~----------E~~EL~eELesL~sk~ 629 (1286)
+-.|-.-+|+.+ ..++ -.++-.+...+--+-+|+++-..|+.+.+. +..-+..++..+.--.
T Consensus 670 rL~dSQtllr~~v~~eqgekqEl-L~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~ 748 (961)
T KOG4673|consen 670 RLSDSQTLLRINVLEEQGEKQEL-LSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRA 748 (961)
T ss_pred hhhhHHHHHHHHHHHHhhhHHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 222323333322 2223 333333444444456677777666552222 3333446666666666
Q ss_pred hhHHHHHhhhc
Q psy12517 630 SALEAEKKKFE 640 (1286)
Q Consensus 630 ssLe~eKRKLE 640 (1286)
..|+.+.+++.
T Consensus 749 ~~le~e~r~~k 759 (961)
T KOG4673|consen 749 NQLEVEIRELK 759 (961)
T ss_pred HHHHHHHHHHH
Confidence 66766666664
No 70
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.40 E-value=0.67 Score=57.21 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=29.6
Q ss_pred HHHHHhhhhhhhHH-------HHhhhccccccCcCcHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHH
Q psy12517 264 AKCEKLEREKSDIL-------LRRLASMETTTSKTTASELLKLQQRVNELK----TENEDLNDEKKSLSLRVRELET 329 (1286)
Q Consensus 264 ~rce~~e~eks~il-------lrrl~~~~t~~~~t~~sELekLQKklnELQ----qEIEDLe~Dkk~L~qrLreLEK 329 (1286)
.+.+.+|..|-+|. |-++-.| .+ +.-|-..+....+.-.++. ..|+..-.+..-.....++..-
T Consensus 29 ~~i~~Le~~k~~l~~~pv~~el~kvk~l-~l-~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a 103 (569)
T PRK04778 29 KRIDELEERKQELENLPVNDELEKVKKL-NL-TGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKA 103 (569)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHH
Confidence 34445555666665 4444444 22 2334455666666655533 2333333444444444444433
No 71
>KOG0977|consensus
Probab=97.38 E-value=0.19 Score=61.57 Aligned_cols=171 Identities=22% Similarity=0.268 Sum_probs=97.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHh-----------hhhhHHHHHHHHHhhhh
Q psy12517 559 RDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAE-----------SSTEKTQITGELESLKS 627 (1286)
Q Consensus 559 reLqds~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs~-----------ae~E~~EL~eELesL~s 627 (1286)
++|++---|-++..+..+|.|-+. ..|+.+|.-|+.. -+.|+..++.-|..-..
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN---------------~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~ 106 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQN---------------RKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETAR 106 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHH
Confidence 344444455566666666666665 4488888887762 33366666666666666
Q ss_pred hhhhHHHHHhhhchH--HHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy12517 628 KLSALEAEKKKFETD--ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLER 705 (1286)
Q Consensus 628 k~ssLe~eKRKLE~d--qLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~ 705 (1286)
..+.+..++.+|..+ .|...+++.+..+...- +.+..... -+..+.+++..-+.....+|...+-|-.
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~r--e~~~~~~~--------~l~~leAe~~~~krr~~~le~e~~~Lk~ 176 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAR--EKLDDYLS--------RLSELEAEINTLKRRIKALEDELKRLKA 176 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH--HHHHHHhh--------hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777644 55555555555444443 55554444 3455566655555555555555544444
Q ss_pred hHHHHHHhhHHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 706 DKTSLEENLKSKETQMT---KTISDLQTKCSTLEKSLTAEQKQKALKEKELK 754 (1286)
Q Consensus 706 qvKELq~RL~E~Es~aK---k~I~kLEaRI~eLEeeLe~EqRek~ea~K~~R 754 (1286)
++--|..-|..+-...- -.-.+++.++.+|-++|+--.+.+.......+
T Consensus 177 en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~ 228 (546)
T KOG0977|consen 177 ENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEER 228 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44444444444432221 11245677888888888877777655444433
No 72
>PRK11637 AmiB activator; Provisional
Probab=97.38 E-value=0.11 Score=61.62 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELR 373 (1286)
Q Consensus 294 sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~K 373 (1286)
..+..+++.+..++++|.++...+..+...+..++.+ +..+...+..+..++..++..+..+..++..++..+.
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~q------i~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEA------ISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443 3334444444444445555555555555555555554
Q ss_pred HHHHHHHHHHhh
Q psy12517 374 YLEEEMDEMQDH 385 (1286)
Q Consensus 374 ELReEmEELrDs 385 (1286)
.++..+..+.-.
T Consensus 121 ~~~~~l~~rlra 132 (428)
T PRK11637 121 AQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 73
>PRK11637 AmiB activator; Provisional
Probab=97.31 E-value=0.11 Score=61.65 Aligned_cols=84 Identities=10% Similarity=0.146 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 297 LKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLE 376 (1286)
Q Consensus 297 ekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELR 376 (1286)
..+++.+..++++|.....++..+...+..++.. +..++..+..+..++..++..+..+..++..++.++..++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~------l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ------LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666655555555543 4556666666666777777777777777777777777777
Q ss_pred HHHHHHHhhh
Q psy12517 377 EEMDEMQDHF 386 (1286)
Q Consensus 377 eEmEELrDs~ 386 (1286)
.+++..++.+
T Consensus 117 ~~l~~~~~~l 126 (428)
T PRK11637 117 QQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHH
Confidence 7777666666
No 74
>KOG0971|consensus
Probab=97.21 E-value=1.3 Score=56.68 Aligned_cols=153 Identities=18% Similarity=0.272 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 299 LQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALR----TKLAAAEGLCEELMDENEEMKKELRY 374 (1286)
Q Consensus 299 LQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELR----TKLlsLE~alEEL~EeLEELKrE~KE 374 (1286)
|.-.+.+|..+++.+.....--..++.+|++=.--+.. ..+.| .+...++..+....-+.+++....+.
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiqleq-------lqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~ 301 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQ-------LQEFKSKIMEQQADLQRELKRARKEAKEAQEAKER 301 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555665555555555555555553222221 22223 33344455555555555555556666
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccH-HHHHH
Q psy12517 375 LEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNK-VERIQ 453 (1286)
Q Consensus 375 LReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~-~~~I~ 453 (1286)
...+|.|..|++ ++.-|-|++- +--.-.||.++.-+..++++++-+++-+-..... +|.+|.+. .-+++
T Consensus 302 ~k~emad~ad~i------EmaTldKEmA--EERaesLQ~eve~lkEr~deletdlEILKaEmee--kG~~~~~~ss~qfk 371 (1243)
T KOG0971|consen 302 YKEEMADTADAI------EMATLDKEMA--EERAESLQQEVEALKERVDELETDLEILKAEMEE--KGSDGQAASSYQFK 371 (1243)
T ss_pred HHHHHHHHHHHH------HHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCcccchHHHH
Confidence 667777777776 4444555553 3344578999999999999999888776333332 23344222 13558
Q ss_pred HHHHHHHHhHHHHHH
Q psy12517 454 ALEKELKLANETAEK 468 (1286)
Q Consensus 454 eLEreLk~akEvs~r 468 (1286)
+||+-=...++.=+|
T Consensus 372 qlEqqN~rLKdalVr 386 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVR 386 (1243)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888765444444443
No 75
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.17 E-value=1.3 Score=55.71 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=37.2
Q ss_pred HHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy12517 707 KTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEIN 761 (1286)
Q Consensus 707 vKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIK 761 (1286)
.+.|+.|+.++|+- +-.+++++|..|..-.|+|++|+..+|..+|...
T Consensus 573 ~~alqekvsevEsr-------l~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~ 620 (739)
T PF07111_consen 573 ERALQEKVSEVESR-------LREQLSEMEKRLNEARREHTKAVVSLRQIQRQAA 620 (739)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777666554 3345677888888888999999999999999865
No 76
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.05 E-value=0.59 Score=54.07 Aligned_cols=167 Identities=20% Similarity=0.291 Sum_probs=86.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhc-cccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLAS-METTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRV 324 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~-~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrL 324 (1286)
..|+.+-..||.+|...+.+|.-+..+...| |.-+- |.+.+..-..-....|=|++..|..+.+++......-...+
T Consensus 30 ~sL~qen~~Lk~El~~ek~~~~~L~~e~~~l--r~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~l 107 (310)
T PF09755_consen 30 ESLQQENRVLKRELETEKARCKHLQEENRAL--REASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFL 107 (310)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666777777777777776665443 22110 11111111112223444445555555555544333322222
Q ss_pred -HHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q psy12517 325 -RELETEAA-----AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLK 398 (1286)
Q Consensus 325 -reLEKKQK-----kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~ 398 (1286)
..|.++.. +-+.-..+..... ..+..+...|..+..+......++..|+.|.=++...+--||=.=+-.|+
T Consensus 108 tn~L~rkl~qLr~EK~~lE~~Le~EqE---~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~ 184 (310)
T PF09755_consen 108 TNDLSRKLNQLRQEKVELENQLEQEQE---YLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22333322 0111111111111 22445555555555555555555666666666666666555556678889
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q psy12517 399 KELEQTAKNCRILSFKLRK 417 (1286)
Q Consensus 399 KeLheleKncRiLq~kLrK 417 (1286)
|.+++++..+|.||.+|..
T Consensus 185 Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999873
No 77
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.98 E-value=0.44 Score=57.51 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHH-----------------
Q psy12517 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAF-KKSNAAEREAEALRTKLAAAE----------------- 355 (1286)
Q Consensus 294 sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkf-dk~eEld~sieELRTKLlsLE----------------- 355 (1286)
..+..+++.+..+..+...+..++..++..+..+....... ..+..+...+..++..+..++
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~ 292 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQ 292 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 34666666666666666666666666666665554321110 112222222233332222222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy12517 356 ------GLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEK 429 (1286)
Q Consensus 356 ------~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~ 429 (1286)
..+..+.+.+..++.+++.+...+.++.... .++.++...+.++....+.+...+..+..+...++.++
T Consensus 293 ~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~-----~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei 367 (562)
T PHA02562 293 QISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIM-----DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAI 367 (562)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233334444444444444444444444444 44444455555555555555555555555555555555
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHH
Q psy12517 430 LEAEKKCREVCGGMEGVNKVERIQALEKELKLANET 465 (1286)
Q Consensus 430 ~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEv 465 (1286)
..++.....+. ..+.+++.+|.....-
T Consensus 368 ~~l~~~~~~~~---------~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 368 EELQAEFVDNA---------EELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHhhhhchH---------HHHHHHHHHHHHHHHH
Confidence 55555544433 3445555555444433
No 78
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.86 E-value=2.3 Score=53.47 Aligned_cols=245 Identities=19% Similarity=0.236 Sum_probs=130.5
Q ss_pred hhHHhhhhhhHH------HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHH---hhhhhHHHHHHHHHh
Q psy12517 554 PTVLMRDLQDSM------EREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRA---ESSTEKTQITGELES 624 (1286)
Q Consensus 554 ~k~lqreLqds~------Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs---~ae~E~~EL~eELes 624 (1286)
+..|...|.+-. ..-.-+.+.|+..+.++...|.. .+.+--.|..+|.-... .....+.+|+.+++.
T Consensus 407 leeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~----~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~ 482 (786)
T PF05483_consen 407 LEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQI----REKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQ 482 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 445555555443 33345556666666666444444 11111112222221111 111244555555543
Q ss_pred -------hhhhhhhHHHHHhhhchH--HHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHH
Q psy12517 625 -------LKSKLSALEAEKKKFETD--ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQR 695 (1286)
Q Consensus 625 -------L~sk~ssLe~eKRKLE~d--qLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~Qk 695 (1286)
|+.....|.-+++.+..+ .+..+++..|.....+. ...-+++- ++..|.+.-++.+ -.
T Consensus 483 EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k--~qee~~~k--------qie~Lee~~~~Lr---ne 549 (786)
T PF05483_consen 483 EKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSK--KQEEKMLK--------QIENLEETNTQLR---NE 549 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HHHHHHHH--------HHHHHHHHHHHHH---HH
Confidence 344555556666666544 44555666555555554 33334433 3333333322222 23
Q ss_pred hHHHHHhHHHhHHHHHHhhHHHhhhh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhh
Q psy12517 696 NAEKVTKLERDKTSLEENLKSKETQM----------TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKN 765 (1286)
Q Consensus 696 lE~~rk~LE~qvKELq~RL~E~Es~a----------Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~ 765 (1286)
++..+..|..+.-++..+|+..|-.+ .++|.-|+.++..|..+++.- .|.+..+..+-|-|+.
T Consensus 550 les~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk-------~K~ieeLqqeNk~LKK 622 (786)
T PF05483_consen 550 LESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENK-------NKNIEELQQENKALKK 622 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHH
Confidence 46777788888889999998888765 367777777777777666633 3333334444454544
Q ss_pred hccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhh
Q psy12517 766 QSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQ----EYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQ 833 (1286)
Q Consensus 766 Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~a----kyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr 833 (1286)
|+.- +.. .+|.-+|..++.++..... .-..+|.++++=. -..+.|..+|.+++.-..
T Consensus 623 k~~aE~kq~-------~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~----~~e~~L~~EveK~k~~a~ 685 (786)
T PF05483_consen 623 KITAESKQS-------NVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKS----ISEEELLGEVEKAKLTAD 685 (786)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHH
Confidence 4432 222 3344444444444444433 4566778888766 677778888888875433
No 79
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.78 E-value=3.2 Score=54.00 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=17.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy12517 244 NDNEYSDQIDLLRHELDNMKAKCEKLEREKS 274 (1286)
Q Consensus 244 ~~~~~~~~i~~lr~el~~~k~rce~~e~eks 274 (1286)
+...|..-...|......++.+.+.++..-+
T Consensus 165 ~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 165 GLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666666665555554444
No 80
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.76 E-value=2.7 Score=52.89 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12517 369 KKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCRE 438 (1286)
Q Consensus 369 KrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lr 438 (1286)
..-+++|..|.+.+-..+..+ ...++..+.++.-.+++|--++...-.++.+||..+..+......
T Consensus 3 ~e~l~qlq~Erd~ya~~lk~e----~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 3 MESLKQLQAERDQYAQQLKEE----SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345667777777777666322 233466667777777788888888888888888777766554444
No 81
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.71 E-value=0.00084 Score=83.68 Aligned_cols=84 Identities=25% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 356 GLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQ---ADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEA 432 (1286)
Q Consensus 356 ~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~---~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~ 432 (1286)
..|.++..++..+..+...|..+...+...+-.-+ .+..+.+.+.+..+...++.|+.++.+++..++.++.+...+
T Consensus 193 q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~l 272 (713)
T PF05622_consen 193 QRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEEL 272 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443331100 112223455555666666667666666666666555555544
Q ss_pred HHHHHhh
Q psy12517 433 EKKCREV 439 (1286)
Q Consensus 433 E~k~lrl 439 (1286)
+..+..|
T Consensus 273 e~ei~~L 279 (713)
T PF05622_consen 273 EKEIDEL 279 (713)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444333
No 82
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.64 E-value=0.25 Score=59.63 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELK 460 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk 460 (1286)
...++.+.+....|+.++.+++....+++.++..++.++..+. ..+++++++..
T Consensus 350 ~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~---------~~~~~~~ke~~ 403 (562)
T PHA02562 350 KQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIV---------KTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 5556666666777777777777777777777777666666654 34555555553
No 83
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.64 E-value=3.6 Score=52.59 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHH---hhhhhHHHHHHHHHhhhhhhhhHHHHHhhhchHHHH
Q psy12517 569 ADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRA---ESSTEKTQITGELESLKSKLSALEAEKKKFETDILE 645 (1286)
Q Consensus 569 ~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs---~ae~E~~EL~eELesL~sk~ssLe~eKRKLE~dqLE 645 (1286)
.||+.-|.++|= .+|+..+.-+++|+-.|...|...+. .+.+++.+..+.+..|...+.+|-.-...-+.....
T Consensus 256 ~DLfSEl~~~Ei---qKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~ 332 (717)
T PF09730_consen 256 SDLFSELNLSEI---QKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAE 332 (717)
T ss_pred chhhhhcchHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhh
Confidence 466666666653 34566666666667778888887766 455567777777888877777765522211111110
Q ss_pred HhHHHH------------hhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHh
Q psy12517 646 KSSKIT------------QLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEEN 713 (1286)
Q Consensus 646 ~eLeE~------------q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~R 713 (1286)
...+.. .+..+... -+++.+.. ++..|..+ +|.|+.+
T Consensus 333 d~~~~~~s~~d~~~ye~Di~~~eiLe--~Ky~vav~--------Ev~~Lk~E---------------------Lk~Lk~k 381 (717)
T PF09730_consen 333 DSEKERDSHEDGDYYEVDINGLEILE--CKYKVAVS--------EVIQLKAE---------------------LKALKSK 381 (717)
T ss_pred hcccccccccccchhhhccccHHHHH--HHHHHHHH--------HHHHHHHH---------------------HHHHHHH
Confidence 000000 01112222 33443433 55555555 5666666
Q ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc
Q psy12517 714 LKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD 769 (1286)
Q Consensus 714 L~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee 769 (1286)
+...+...+.....+++.+..|..+|..-.+........+..++.+|+-+..-+.+
T Consensus 382 ~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E 437 (717)
T PF09730_consen 382 YNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGE 437 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 66666655555666677777777777766665555566777777777766665555
No 84
>KOG0963|consensus
Probab=96.56 E-value=3.5 Score=51.54 Aligned_cols=372 Identities=17% Similarity=0.201 Sum_probs=177.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q psy12517 405 AKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERAN 484 (1286)
Q Consensus 405 eKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekle~e~ 484 (1286)
+.-..+.|-+.--+=.+...+|+++-.. |..|-..++-+-...-...+-..++.+..-.++|+.+|++++.++....
T Consensus 65 ~~llK~yQ~EiD~LtkRsk~aE~afl~v---ye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k 141 (629)
T KOG0963|consen 65 NPLLKSYQSEIDNLTKRSKFAEAAFLDV---YEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLK 141 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 3344455555556666666776666554 3333222333333233355555555566667899999999999886554
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCccccchhhhhccCCCCcchhHHhhhhhhH
Q psy12517 485 GGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDS 564 (1286)
Q Consensus 485 ~~~~~~l~~~~~~~a~~~kkKLE~dL~ElE~kle~ank~k~ealkql~K~~~~~k~~~~sl~r~gsqe~~k~lqreLqds 564 (1286)
.+.. .-..|...+.+++..++...+....... .+. +.+..+-+..|.
T Consensus 142 ~qq~-------------~v~~l~e~l~k~~~~~~~~ie~~a~~~e--~~~----------------~q~~~e~e~~L~-- 188 (629)
T KOG0963|consen 142 TQQV-------------TVRNLKERLRKLEQLLEIFIENAANETE--EKL----------------EQEWAEREAGLK-- 188 (629)
T ss_pred hhHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHH----------------HHHHHHHHHHHH--
Confidence 3331 2233444555554444443322111111 000 112233444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhhhHHHHHhhhchHHH
Q psy12517 565 MEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDIL 644 (1286)
Q Consensus 565 ~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs~ae~E~~EL~eELesL~sk~ssLe~eKRKLE~dqL 644 (1286)
....-+.+|+..+|.+. ..|.+...+.++ ++..+++....+..=...+ .+--...|+..+-++. .|
T Consensus 189 -~~~~~~~~q~~~le~ki-~~lq~a~~~t~~-------el~~~~s~~dee~~~k~ae---v~lim~eLe~aq~ri~--~l 254 (629)
T KOG0963|consen 189 -DEEQNLQEQLEELEKKI-SSLQSAIEDTQN-------ELFDLKSKYDEEVAAKAAE---VSLIMTELEDAQQRIV--FL 254 (629)
T ss_pred -HHHHHHHHHHHHHHHHH-HHHHHHHHhhhh-------HHHHHHHhhhhhhHHHHHH---HHHHHHHHHHHHHHHH--HH
Confidence 44667788888888888 666552222222 2223332211111111111 1112222222222221 55
Q ss_pred HHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhh
Q psy12517 645 EKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKT 724 (1286)
Q Consensus 645 E~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~ 724 (1286)
+.+|+.....+...+ .-.+.+ .+. ++.++..-|.+ .|+.-..|-..++.+++-+.+.....+.+
T Consensus 255 E~e~e~L~~ql~~~N--~~~~~~--~~~-----~i~~~~~~L~~-------kd~~i~~L~~di~~~~~S~~~e~e~~~~q 318 (629)
T KOG0963|consen 255 EREVEQLREQLAKAN--SSKKLA--KID-----DIDALGSVLNQ-------KDSEIAQLSNDIERLEASLVEEREKHKAQ 318 (629)
T ss_pred HHHHHHHHHHHHhhh--hhhhhc--cCC-----chHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555554 222111 111 22233333222 45555566666666676666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 725 ISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESE---INVLKNQSS-DNVTKQITELKTQYEQEIKKLEDTLVQERQEY 800 (1286)
Q Consensus 725 I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERr---IKEL~~Q~e-ekn~~rlqEl~KqyKRQlEEaEEea~~~~aky 800 (1286)
|++|+..+...-..|+ +.+++....+..-..-++ +|.+.|-.. +.+..- +.++.+.. ..+.+-
T Consensus 319 I~~le~~l~~~~~~le-el~~kL~~~sDYeeIK~ELsiLk~ief~~se~a~~~~--~~~~~les----------lLl~kn 385 (629)
T KOG0963|consen 319 ISALEKELKAKISELE-ELKEKLNSRSDYEEIKKELSILKAIEFGDSEEANDED--ETAKTLES----------LLLEKN 385 (629)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhccHHHHHHHHHHHHHhhcCCcccccccc--cccchHHH----------HHHHHH
Confidence 7777665555544444 222333222222222222 333344422 211110 33344333 345667
Q ss_pred HHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccccCCchhhhhchhhhhHHHHHHHH-HHH
Q psy12517 801 EDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRL-TEV 879 (1286)
Q Consensus 801 RKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~~kg~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l-~~~ 879 (1286)
|+||+++-.+. ..++.+...++++..+... +.+-.+.++++ ..+
T Consensus 386 r~lq~e~a~Lr----~~n~~~~~~~~~~~~~~~e-------------------------------l~~~~~~~ke~i~kl 430 (629)
T KOG0963|consen 386 RKLQNENASLR----VANSGLSGRITELSKKGEE-------------------------------LEAKATEQKELIAKL 430 (629)
T ss_pred hhhhHHHHHHh----ccccccchhHHHHHhhhhh-------------------------------hHHHHHHHHHHHHHH
Confidence 77777777766 5666666555555543322 33455667776 777
Q ss_pred HHHHHhhcCCC
Q psy12517 880 AAELKRASQLP 890 (1286)
Q Consensus 880 ~~~~~~~~~~~ 890 (1286)
..+|..-+..|
T Consensus 431 E~dl~~~~~~~ 441 (629)
T KOG0963|consen 431 EQDLLKVQVSP 441 (629)
T ss_pred HhhHhhcccCC
Confidence 88887666544
No 85
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.56 E-value=2.2 Score=49.28 Aligned_cols=162 Identities=25% Similarity=0.340 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhh------------hhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHH
Q psy12517 247 EYSDQIDLLRHELDNMKAKCEKLEREK------------SDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLN 314 (1286)
Q Consensus 247 ~~~~~i~~lr~el~~~k~rce~~e~ek------------s~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe 314 (1286)
=|+++|.-||-+++++|.. -.|+|+ -+=|.+-+- =.=..+.+++..+.+++..+.
T Consensus 3 ~Lq~eia~LrlEidtik~q--~qekE~ky~ediei~Kekn~~Lqk~lK-----------LneE~ltkTi~qy~~QLn~L~ 69 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQ--NQEKEKKYLEDIEILKEKNDDLQKSLK-----------LNEETLTKTIFQYNGQLNVLK 69 (305)
T ss_pred hHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHhhhHHHHH
Confidence 3899999999999999873 333333 222222220 011346677777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q psy12517 315 DEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEY 394 (1286)
Q Consensus 315 ~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~ 394 (1286)
.+...++..+.. ... ..+-++..++.+|.+|.++-..++..+-.--.++.....-+.|.--+++.+
T Consensus 70 aENt~L~SkLe~---EKq---~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkm-------- 135 (305)
T PF14915_consen 70 AENTMLNSKLEK---EKQ---NKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKM-------- 135 (305)
T ss_pred HHHHHHhHHHHH---hHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHh--------
Confidence 888887776532 111 223467889999999999999999988888888888877777777777777
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12517 395 SSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCRE 438 (1286)
Q Consensus 395 ~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lr 438 (1286)
.-++-.+.-+.-+|..+|.+++.++--|+.++.+.-+.+.+
T Consensus 136 ---n~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrE 176 (305)
T PF14915_consen 136 ---NSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALRE 176 (305)
T ss_pred ---cchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777899999999999999999999988776665
No 86
>KOG2991|consensus
Probab=96.51 E-value=0.28 Score=55.20 Aligned_cols=183 Identities=22% Similarity=0.277 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 248 YSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVREL 327 (1286)
Q Consensus 248 ~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreL 327 (1286)
+.++|..||..-..||..|+-+-| +..||++||| | .++...++...|.+|-.-..-....++.+
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~R-rE~ilv~rlA---~------------kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~ 169 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAAR-RENILVMRLA---T------------KEQEMQECTSQIQYLKQQQQPSVAQLRST 169 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHH---H------------HHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 778999999999999999998876 6789999997 2 34555555555555433222111111110
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHH
Q psy12517 328 ETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKN 407 (1286)
Q Consensus 328 EKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKn 407 (1286)
-+|-++-. .+..+..+++.-+..+++++.++.-+.=.- |- .-||- +---
T Consensus 170 -----------llDPAinl----------~F~rlK~ele~tk~Klee~QnelsAwkFTP-----dS--~tGK~---LMAK 218 (330)
T KOG2991|consen 170 -----------LLDPAINL----------FFLRLKGELEQTKDKLEEAQNELSAWKFTP-----DS--KTGKM---LMAK 218 (330)
T ss_pred -----------hhChHHHH----------HHHHHHHHHHHHHHHHHHHHhhhheeeecC-----CC--cchHH---HHHH
Confidence 01112222 233445556666666666666666664222 10 01333 3456
Q ss_pred hhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 408 CRILSFKLRKSER-----RSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDK 479 (1286)
Q Consensus 408 cRiLq~kLrKaer-----k~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEek 479 (1286)
||.|+.+-.++=+ ++-+||.+++---....++-....|+.+ .|.+|..+++-...+-.=||.+|.+....
T Consensus 219 CR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~d--fm~eLdedVEgmqsTiliLQq~Lketr~~ 293 (330)
T KOG2991|consen 219 CRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYD--FMEELDEDVEGMQSTILILQQKLKETRKE 293 (330)
T ss_pred HHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHH--HHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 9999988877644 5667777777665666666555556666 67788888877777777777776665543
No 87
>KOG1029|consensus
Probab=96.28 E-value=3.1 Score=52.91 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=28.6
Q ss_pred hhhhhhhhhHHHHHHHhHHHH-hhhhhhhHHHHHHHhHHHHhhhhhc
Q psy12517 1011 YDKRATALSDELKAIQGQVLR-FKRERDTFKHMLEGAQKTIADLKAS 1056 (1286)
Q Consensus 1011 y~~~~~~~~~e~~~~~~~~~r-~kr~rd~~k~~le~aq~~~~~~k~~ 1056 (1286)
+.+|+..|..++.+.|-+|.. ||-+||-.||.--.+---|+.-++-
T Consensus 568 ~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ke~e 614 (1118)
T KOG1029|consen 568 FNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGEKEAE 614 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 445666666667677766664 5558888886555554455554444
No 88
>KOG0980|consensus
Probab=96.24 E-value=5 Score=51.79 Aligned_cols=177 Identities=19% Similarity=0.276 Sum_probs=83.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy12517 244 NDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLR 323 (1286)
Q Consensus 244 ~~~~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qr 323 (1286)
..+....+|.++..++..+++ ..+.++.+-...+.+ -.+.+..++=.+++.+-..+....+.+.++..
T Consensus 327 qkd~~~~~~~~~~~e~~~~~~-------~l~~~~~ear~~~~q-----~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~e 394 (980)
T KOG0980|consen 327 QKDPRELQIEQLSREVAQLKA-------QLENLKEEARRRIEQ-----YENQLLALEGELQEQQREAQENREEQEQLRNE 394 (980)
T ss_pred cCChhhHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 335677789999999999998 344333221111111 12233333333333333333333333333333
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHH
Q psy12517 324 VRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQ 403 (1286)
Q Consensus 324 LreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLhe 403 (1286)
+..|...+.. .+.++ -.+..+++..--+....+.++..+.+|+.+..+|-..+ ++. .+.++-
T Consensus 395 laql~a~r~q------~eka~----~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~-----~di---~kQle~ 456 (980)
T KOG0980|consen 395 LAQLLASRTQ------LEKAQ----VLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKY-----DDI---QKQLES 456 (980)
T ss_pred HHHHHHHHHH------HHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHH
Confidence 3333332211 11111 01233333333444555556666666666666666666 555 444444
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHH
Q psy12517 404 TAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKEL 459 (1286)
Q Consensus 404 leKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreL 459 (1286)
.+...=-++-++-.+..+++++..+...+|-|..... ..+.+|+++|
T Consensus 457 ~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~---------~~le~l~~El 503 (980)
T KOG0980|consen 457 AEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQA---------KALESLRQEL 503 (980)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---------HHHHHHHHHH
Confidence 4444444444444445555555555555555555443 2445666665
No 89
>KOG1029|consensus
Probab=96.18 E-value=5.9 Score=50.60 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhhhhhhhhHHHHHhhhc
Q psy12517 614 EKTQITGELESLKSKLSALEAEKKKFE 640 (1286)
Q Consensus 614 E~~EL~eELesL~sk~ssLe~eKRKLE 640 (1286)
|+++|..+|.++..++.-|.-++-.|.
T Consensus 487 ei~qlqarikE~q~kl~~l~~Ekq~l~ 513 (1118)
T KOG1029|consen 487 EIDQLQARIKELQEKLQKLAPEKQELN 513 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444444444444444444444444443
No 90
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.13 E-value=0.46 Score=49.34 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=77.8
Q ss_pred hHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccchHHHHHHHHHH
Q psy12517 702 KLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQ 781 (1286)
Q Consensus 702 ~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~Kq 781 (1286)
.++.++|+|..++...|.. |..|..|+..||.+|+ +++-.|+++.-.+++..... -...+
T Consensus 18 ~~e~~~K~le~~~~~~E~E----I~sL~~K~~~lE~eld--------------~~~~~l~~~k~~lee~~~~~--~~~E~ 77 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQE----ITSLQKKNQQLEEELD--------------KLEEQLKEAKEKLEESEKRK--SNAEQ 77 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhHHHHH--HhHHH
Confidence 4555666666666555544 6677777777776666 45556776666666521100 11127
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 782 YEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 782 yKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
|.|.|.-+|+++.....+++.....|.++. ..++.+++.|..|..+...
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d----~~ae~~eRkv~~le~~~~~ 126 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREAD----VKAEHFERKVKALEQERDQ 126 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHhhHHH
Confidence 888899999999999999999999999999 9999999999999875554
No 91
>KOG0018|consensus
Probab=95.93 E-value=9.5 Score=50.35 Aligned_cols=68 Identities=25% Similarity=0.298 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHH
Q psy12517 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRK 417 (1286)
Q Consensus 349 TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrK 417 (1286)
-+++-.+...+.+.+++..++.++..+...++.....++.= -.+...+.|++-+..+-.+-.+-.+-+
T Consensus 220 ~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~-k~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 220 WELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVR-KKERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred HHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777788888888888888888888887777766665110 011113345555555555555544444
No 92
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.79 E-value=0.92 Score=52.30 Aligned_cols=29 Identities=14% Similarity=0.262 Sum_probs=22.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12517 244 NDNEYSDQIDLLRHELDNMKAKCEKLERE 272 (1286)
Q Consensus 244 ~~~~~~~~i~~lr~el~~~k~rce~~e~e 272 (1286)
|+..++.++..|+.++..+++..++++.+
T Consensus 75 d~~~~~~~l~~l~~~~~~l~a~~~~l~~~ 103 (423)
T TIGR01843 75 DATDVEADAAELESQVLRLEAEVARLRAE 103 (423)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888888888888888877665443
No 93
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.71 E-value=1.7 Score=47.42 Aligned_cols=141 Identities=28% Similarity=0.383 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHH--HHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 250 DQIDLLRHELDNMKAKCEKLEREKSDIL--LRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVREL 327 (1286)
Q Consensus 250 ~~i~~lr~el~~~k~rce~~e~eks~il--lrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreL 327 (1286)
+-|.+|+.++..|+.++++.++.-.+|. .+||. --|..+++.+.+|+..+..+..++..
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~-----------epL~~a~~e~~eL~k~L~~y~kdK~~-------- 87 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLS-----------EPLKKAEEEVEELRKQLKNYEKDKQS-------- 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 4689999999999999998888877776 33331 23444455555555545444444432
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHH
Q psy12517 328 ETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKN 407 (1286)
Q Consensus 328 EKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKn 407 (1286)
...++.++..++..+..+.-+.+.++.....+..|.+++...| +.=+.++ + ..+.--
T Consensus 88 ----------------L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf-~~~i~ev---q---Qk~~~k 144 (201)
T PF13851_consen 88 ----------------LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF-ESAIQEV---Q---QKTGLK 144 (201)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---H---HHHHHH
Confidence 2334444555555666666666666667777777777777777 1111222 1 112223
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 408 CRILSFKLRKSERRSEQLEAEKLEA 432 (1286)
Q Consensus 408 cRiLq~kLrKaerk~EElE~E~~~~ 432 (1286)
--.|+.+|..+...+|.-++++...
T Consensus 145 n~lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 145 NLLLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999988888877764
No 94
>KOG4593|consensus
Probab=95.67 E-value=9.5 Score=48.43 Aligned_cols=93 Identities=15% Similarity=0.122 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVR-ELETEAA-AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKE 371 (1286)
Q Consensus 294 sELekLQKklnELQqEIEDLe~Dkk~L~qrLr-eLEKKQK-kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE 371 (1286)
+...++...+..++....+..........+.+ .++.+.+ .-....++...++++-+-..++.+.+-++..+..-++..
T Consensus 101 dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~ 180 (716)
T KOG4593|consen 101 DRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMR 180 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555444444444443 3333333 122444555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhh
Q psy12517 372 LRYLEEEMDEMQDHF 386 (1286)
Q Consensus 372 ~KELReEmEELrDs~ 386 (1286)
.+.+...+..+...|
T Consensus 181 ~~~~~s~l~~~eke~ 195 (716)
T KOG4593|consen 181 AKRLHSELQNEEKEL 195 (716)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555544444444444
No 95
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.64 E-value=8.7 Score=47.80 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCcccccc
Q psy12517 772 TKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRK 851 (1286)
Q Consensus 772 ~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~~kg~~i~~~~~~~~~~ 851 (1286)
.-.+.+..+.+..++++.+++-.........|..+-..|. +....+...+..++..+.. ++
T Consensus 374 yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar----~~l~~~~~~l~~ikR~lek-------~n-------- 434 (560)
T PF06160_consen 374 YSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAR----EKLQKLKQKLREIKRRLEK-------SN-------- 434 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-------cC--------
Confidence 3344444455555566666655555555555555555555 5555555555555555544 22
Q ss_pred cccCCchhhhhchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCC-CcHHHHHHHHHHHHHHHhh-cCCccccchhhhHHHH
Q psy12517 852 ITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRASQLPPTPP-TTEESQNRIRRAAFAAKKS-VSTESDHTGESSSRAL 929 (1286)
Q Consensus 852 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~P-d~eev~~rI~rLe~~m~~l-VNM~Ai~Eyd~V~~rl 929 (1286)
-|.|...|-.- +..+-.++..+...|. .+| +++.|...+..+...|..| -+...+-+...+-.++
T Consensus 435 ---LPGlp~~y~~~---~~~~~~~i~~l~~~L~-------~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~ 501 (560)
T PF06160_consen 435 ---LPGLPEDYLDY---FFDVSDEIEELSDELN-------QVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQL 501 (560)
T ss_pred ---CCCCCHHHHHH---HHHHHHHHHHHHHHHh-------cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555444332 3334445555554433 334 7777777777766666555 1112222233333333
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHh---hhcCCcchhhhhhHhHHHHHHhhcCC
Q psy12517 930 HRKGSLYRKSLSLEQTSQLAQEENIW---KMTDDNDSSLTSFQSIDDAYENVKYT 981 (1286)
Q Consensus 930 ~el~s~r~~~Ls~Ere~IlErIeq~e---k~kkd~~sfM~sfeaInkIf~~LS~G 981 (1286)
-.-+++|+. .+..+...+.+-+ ... - -+=.+|+-|..+-..+.||
T Consensus 502 iQYaNRYR~----~~~~v~~al~~Ae~~F~~~-~--~Y~~ALe~i~~alE~vePG 549 (560)
T PF06160_consen 502 IQYANRYRS----DNPEVDEALTEAEDLFRNE-Y--DYEKALETIATALEKVEPG 549 (560)
T ss_pred HHHHhcccC----CCHHHHHHHHHHHHHHHhh-C--CHHHHHHHHHHHHHHhCCC
Confidence 333444433 1222222222211 010 1 2345666677777778888
No 96
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.63 E-value=1.1 Score=46.45 Aligned_cols=43 Identities=30% Similarity=0.364 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
.+.|..+....|-...+...++|++..||.+...||.++..+.
T Consensus 93 e~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 93 EKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELE 135 (143)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555666666666666666667777777777777766666654
No 97
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.45 E-value=7.2 Score=45.56 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 366 EEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKC 436 (1286)
Q Consensus 366 EELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~ 436 (1286)
..|.+.+.+|+.|--++...+-.|+-+.+ +.+.+-|..|+.+.-..+..++++-.|+-.+|..+
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V-------~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~L 172 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLV-------NKLQKKIERLEKEKSAKQEELERLRREKVDLENTL 172 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Confidence 44556677777777777777744444444 44444555555544445555555555555554443
No 98
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.39 E-value=3 Score=48.78 Aligned_cols=191 Identities=17% Similarity=0.195 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 296 LLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK---------------KSNAAEREAEALRTKLAAAEGLCEE 360 (1286)
Q Consensus 296 LekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd---------------k~eEld~sieELRTKLlsLE~alEE 360 (1286)
|.-|-+.+...+.+-+.|-...+.++.+...|.++..... ....+..-+.++|.+...+...++.
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~ 90 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE 90 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777777777788888888887776222 2234455567777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 361 LMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 361 L~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
+...+.+++-.++-||..+..++..+..-.+..+ .| ++.-.|.+ |.++..+..+|+-+++..-+-+.++.
T Consensus 91 Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~------~~--ere~lV~q--LEk~~~q~~qLe~d~qs~lDEkeEl~ 160 (319)
T PF09789_consen 91 LRQKLNEAQGDIKLLREKLARQRVGDEGIGARHF------PH--EREDLVEQ--LEKLREQIEQLERDLQSLLDEKEELV 160 (319)
T ss_pred HHHHHHHHhchHHHHHHHHHhhhhhhcccccccc------ch--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887776643333332 12 23333332 36677777777777666554444432
Q ss_pred cCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHh
Q psy12517 441 GGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERA 520 (1286)
Q Consensus 441 ~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~~~~a~~~kkKLE~dL~ElE~kle~a 520 (1286)
.+-..+....-||.+||--+ | .|...+++|+... .-+|+.|...|+.+++..+.+
T Consensus 161 ----------------~ERD~yk~K~~RLN~ELn~~---L----~g~~~rivDIDaL--i~ENRyL~erl~q~qeE~~l~ 215 (319)
T PF09789_consen 161 ----------------TERDAYKCKAHRLNHELNYI---L----NGDENRIVDIDAL--IMENRYLKERLKQLQEEKELL 215 (319)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHH---h----CCCCCCcccHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 33367778888888887544 2 5555555554432 257888888888877666555
Q ss_pred c
Q psy12517 521 N 521 (1286)
Q Consensus 521 n 521 (1286)
.
T Consensus 216 k 216 (319)
T PF09789_consen 216 K 216 (319)
T ss_pred H
Confidence 4
No 99
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.29 E-value=3.7 Score=51.51 Aligned_cols=75 Identities=15% Similarity=0.242 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 361 LMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREV 439 (1286)
Q Consensus 361 L~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrl 439 (1286)
|..-++.-..-+..|..+.+..+.-+ +++|+.|+......+-.+..+-.+++.+...+.+++.+...-+..+..|
T Consensus 399 L~~~v~~s~~rl~~L~~qWe~~R~pL----~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL 473 (594)
T PF05667_consen 399 LQALVEASEQRLVELAQQWEKHRAPL----IEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQL 473 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444 4555555555555555555566777777777777777777666554444
No 100
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=95.28 E-value=13 Score=47.67 Aligned_cols=151 Identities=22% Similarity=0.295 Sum_probs=89.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------hhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 303 VNELKTENEDLNDEKKSLSLRVRELETEAA-------AFK------KSNAAEREAEALRTKLAAAEGLCEELMDENEEMK 369 (1286)
Q Consensus 303 lnELQqEIEDLe~Dkk~L~qrLreLEKKQK-------kfd------k~eEld~sieELRTKLlsLE~alEEL~EeLEELK 369 (1286)
+.-|..++-.+.-.+..+++++++-|+-.+ .|. .---+.....+....+..+....+++...++..+
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 567788888888899999999998777665 111 1112233333444444445555555555555555
Q ss_pred HHHHHHHHHHHHHHhhhhhhh---hhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q psy12517 370 KELRYLEEEMDEMQDHFREDQ---ADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGV 446 (1286)
Q Consensus 370 rE~KELReEmEELrDs~rEe~---~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv 446 (1286)
.|++.+...+.+.-+.+.+-- -.+...++-+|+++=-+...++|+|..++. |++.+.
T Consensus 469 ~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sek------------EN~iL~-------- 528 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEK------------ENQILG-------- 528 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh------------hhhHhh--------
Confidence 555555555444333321100 123445677777777777777777765543 223333
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy12517 447 NKVERIQALEKELKLANETAEKLQKDLKEA 476 (1286)
Q Consensus 447 ~~~~~I~eLEreLk~akEvs~rLq~eLeel 476 (1286)
..|++=+.++....|+.+-||.-...+
T Consensus 529 ---itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 529 ---ITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246777777888888888888865544
No 101
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.14 E-value=7.6 Score=48.87 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhh
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQ 720 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~ 720 (1286)
++..+..++...+...+.+......++.++.+++.++.+++..
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~ 252 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKK 252 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666666666666553
No 102
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.11 E-value=5.3 Score=45.14 Aligned_cols=84 Identities=23% Similarity=0.248 Sum_probs=50.9
Q ss_pred hHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHH
Q psy12517 392 DEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQK 471 (1286)
Q Consensus 392 de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~ 471 (1286)
.++..|++++..+......|+.++..+.-..+.++.+...+..+..+++. +.+..-..+|-++....+....+..
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~-----~~~e~~~~~e~e~~~i~e~~~~~~~ 163 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK-----NLAEAEARLEEEVAEIREEGQELSS 163 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777777777777776666666666541 1111114444444555555666666
Q ss_pred HHHHHHHHH
Q psy12517 472 DLKEATDKL 480 (1286)
Q Consensus 472 eLeelEekl 480 (1286)
+-+++.+++
T Consensus 164 ~~~~L~~~l 172 (239)
T COG1579 164 KREELKEKL 172 (239)
T ss_pred HHHHHHHhc
Confidence 666665554
No 103
>KOG1003|consensus
Probab=95.11 E-value=4.2 Score=44.77 Aligned_cols=132 Identities=17% Similarity=0.277 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12517 679 LNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKT 755 (1286)
Q Consensus 679 ~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK 755 (1286)
+..+...|...+-..+..++.-....+++-=++.-|..++--+ -..+..|+.-++-+-+.|..-.+--..+.-..-.
T Consensus 62 ~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~ 141 (205)
T KOG1003|consen 62 MEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEK 141 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHH
Confidence 4445555555554444444333333222222222222222211 1224444444444555555555555566666777
Q ss_pred hhhHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy12517 756 KESEINVLKNQSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDIL 810 (1286)
Q Consensus 756 ~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEea 810 (1286)
++..||.|+-.+-+ ..+...--.|..+..+++++|..+....-+|..++.+|+.+
T Consensus 142 ~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 142 YEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 88888888776665 45666666678888888888888888888888888888875
No 104
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.01 E-value=3.7 Score=47.74 Aligned_cols=130 Identities=24% Similarity=0.265 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELR 373 (1286)
Q Consensus 294 sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~K 373 (1286)
..+..||+++..|..+...+..+...+......+|.+..- =+.++-.++..+-..+..+.++|.....++.
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqq---------Lv~dcv~QL~~An~qia~LseELa~k~Ee~~ 230 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQ---------LVLDCVKQLSEANQQIASLSEELARKTEENR 230 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHH---------HHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 4567788887777776666666666666666666655320 0233334555555566666666666666666
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 374 YLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 374 ELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
..+++|..+..++ .+. ++-+.++.=..=-|...|..+...-.+|.+++..+.+++.+..
T Consensus 231 rQQEEIt~Llsqi-----vdl---Q~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~ 289 (306)
T PF04849_consen 231 RQQEEITSLLSQI-----VDL---QQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECM 289 (306)
T ss_pred HHHHHHHHHHHHH-----HHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655 333 4444444444444555555555556667777777777777764
No 105
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.99 E-value=15 Score=46.78 Aligned_cols=154 Identities=17% Similarity=0.282 Sum_probs=88.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 722 TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQE 799 (1286)
Q Consensus 722 Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~ak 799 (1286)
...+..|..+|.+||.++.+.+.+.+.++-.+...+.++.-=.+++.- -...+-++-.-.++.|+.-+|+.+....-.
T Consensus 330 ~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~ea 409 (739)
T PF07111_consen 330 RDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEA 409 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788889999999999999999988877774433333211111110 123333344455777788888877766655
Q ss_pred HHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccccCCchhhhhchhhhhHHHHHHHHHHH
Q psy12517 800 YEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEV 879 (1286)
Q Consensus 800 yRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~~kg~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~ 879 (1286)
..-.|.-|.--. -..+.+-..+.+|-.++.- .- +++.+ |...+++..-+
T Consensus 410 v~S~q~~L~s~m----a~ve~a~aRL~sL~~RlSy-------Av------rrv~t--------------iqGL~Ark~Al 458 (739)
T PF07111_consen 410 VSSSQQWLESQM----AKVEQALARLPSLSNRLSY-------AV------RRVHT--------------IQGLMARKLAL 458 (739)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHH-------Hh------cccch--------------hHHHHHHHHHH
Confidence 666665544422 2222333344555544442 11 44555 77777766655
Q ss_pred HHHHHhhcCCCCCCCCcHHHHHHHHHHHH
Q psy12517 880 AAELKRASQLPPTPPTTEESQNRIRRAAF 908 (1286)
Q Consensus 880 ~~~~~~~~~~~~~~Pd~eev~~rI~rLe~ 908 (1286)
+. |+ ..+-||-||.+..+...+..+-.
T Consensus 459 aq-lr-qe~~~~~pp~~~dL~~ELqqLRe 485 (739)
T PF07111_consen 459 AQ-LR-QEQCPPSPPSVTDLSLELQQLRE 485 (739)
T ss_pred HH-HH-hccCCCCCCchhhHHHHHHHHHH
Confidence 53 33 34445568877777766665544
No 106
>KOG0963|consensus
Probab=94.97 E-value=14 Score=46.38 Aligned_cols=256 Identities=16% Similarity=0.186 Sum_probs=128.8
Q ss_pred chhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHH--hhhhhHHHHHHHHHhhhhhhh
Q psy12517 553 DPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRA--ESSTEKTQITGELESLKSKLS 630 (1286)
Q Consensus 553 ~~k~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs--~ae~E~~EL~eELesL~sk~s 630 (1286)
.++.+|.+++-. -.-..|+|-.. -.+..++.++|.+-=+|..-...+.. .++.|..+|..++..+.....
T Consensus 67 llK~yQ~EiD~L-------tkRsk~aE~af-l~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~ 138 (629)
T KOG0963|consen 67 LLKSYQSEIDNL-------TKRSKFAEAAF-LDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELA 138 (629)
T ss_pred HHHHHHHHHHHH-------HHHHHhhHHHH-HHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 556777775533 33456777776 77777788888887776666655543 356666777766666654444
Q ss_pred hHHHHHhhhchHHHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHH-hHHHHHhHHHhHHH
Q psy12517 631 ALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQR-NAEKVTKLERDKTS 709 (1286)
Q Consensus 631 sLe~eKRKLE~dqLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~Qk-lE~~rk~LE~qvKE 709 (1286)
.+......+. -|...+.+..... . .++..+.. -....+.++....+. |-.+...+..|+..
T Consensus 139 ~~k~qq~~v~--~l~e~l~k~~~~~---~--~~ie~~a~-----------~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~ 200 (629)
T KOG0963|consen 139 DLKTQQVTVR--NLKERLRKLEQLL---E--IFIENAAN-----------ETEEKLEQEWAEREAGLKDEEQNLQEQLEE 200 (629)
T ss_pred hhhhhHHHHH--hHHHHHHHHHHHH---H--HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222221 1111111110000 0 01111111 011111111111110 11222233333444
Q ss_pred HHHhhHHHhhhhh---hhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccc-hHHHHH--HHH
Q psy12517 710 LEENLKSKETQMT---KTISDLQTK----CSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDN-VTKQIT--ELK 779 (1286)
Q Consensus 710 Lq~RL~E~Es~aK---k~I~kLEaR----I~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eek-n~~rlq--El~ 779 (1286)
++.++..+....+ .+...+++. +.-.-.++..-..+=..++.-+.-+|+++-.|.-|...- +..+.. +.+
T Consensus 201 le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i 280 (629)
T KOG0963|consen 201 LEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDI 280 (629)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch
Confidence 4444444333321 111122222 233333444444555668888888899998888888863 333333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 780 TQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 780 KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
-+..-++.-.+.++.+....+..++.-+-++.+.|...-..+++++....+.+..
T Consensus 281 ~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~lee 335 (629)
T KOG0963|consen 281 DALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEE 335 (629)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556667777777778788777777777766766666666666655554433
No 107
>KOG4673|consensus
Probab=94.95 E-value=15 Score=46.59 Aligned_cols=115 Identities=22% Similarity=0.297 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h--hhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12517 348 RTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDH--F--REDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSE 423 (1286)
Q Consensus 348 RTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs--~--rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~E 423 (1286)
-+++..++..+.-+..+.+.++++++.|+.++...--. + -+|.|..+ .-+=+.+.|..=.=+.-++|+..+.-
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~l---m~EGEkLSK~ql~qs~iIkKLRAk~k 484 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQL---MAEGEKLSKKQLAQSAIIKKLRAKIK 484 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666667777777777666665432211 1 01222333 34444555544444556677777776
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHH
Q psy12517 424 QLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKE-------LKLANETAEKLQKDLKEATDKLE 481 (1286)
Q Consensus 424 ElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEre-------Lk~akEvs~rLq~eLeelEekle 481 (1286)
+.|. ++.|+.. +|..|+.+ |.--+++-+.|+-.|.-+.+++.
T Consensus 485 e~et----l~~K~ge------------~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~ 533 (961)
T KOG4673|consen 485 EAET----LEEKKGE------------LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELT 533 (961)
T ss_pred hhhH----HHHHhhh------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6542 2222222 23333333 33334566666667777776664
No 108
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.69 E-value=8.3 Score=42.25 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=18.5
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 395 SSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 395 ~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
..|.+.++-++++.+ .++.--..+.-++..+...+...+..|.
T Consensus 142 ~~Lek~leL~~k~~~---rql~~e~kK~~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 142 QELEKQLELENKSFR---RQLASEKKKHKEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred HHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344665555555532 2222222333344444444444444443
No 109
>KOG0933|consensus
Probab=94.62 E-value=22 Score=46.93 Aligned_cols=41 Identities=32% Similarity=0.376 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMET 286 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t 286 (1286)
.++++-|..|...+.......+-+|.+...|-.+|-+.|.-
T Consensus 254 ~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~ 294 (1174)
T KOG0933|consen 254 EEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGG 294 (1174)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 45555666666666666666666777777777777766654
No 110
>PRK09039 hypothetical protein; Validated
Probab=94.25 E-value=11 Score=44.51 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12517 295 ELLKLQQRVNELKTENEDLNDEKKSLSLRVRELET 329 (1286)
Q Consensus 295 ELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEK 329 (1286)
++..+++.+.+|+.+|.++-.-+..-+.....|+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~ 81 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQD 81 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44555555555555555555555444444444444
No 111
>PRK09039 hypothetical protein; Validated
Probab=94.15 E-value=6.8 Score=46.06 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHh
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLA 462 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~a 462 (1286)
.-...+.......|..++.-++.++-.+++++..+|.+..... .+|.+|+++|..+
T Consensus 129 k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~---------~~i~~L~~~L~~a 184 (343)
T PRK09039 129 KQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQ---------AKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 3334444444555556666666666666666666665555554 4566666666444
No 112
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.14 E-value=1.7 Score=44.39 Aligned_cols=101 Identities=20% Similarity=0.307 Sum_probs=67.2
Q ss_pred cccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 286 TTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAA----AFKKSNAAEREAEALRTKLAAAEGLCEEL 361 (1286)
Q Consensus 286 t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQK----kfdk~eEld~sieELRTKLlsLE~alEEL 361 (1286)
|.+...+.+.+.+|+-.+..+.+++..+..++..+...-..+....- ..+...........++.++..+...++.+
T Consensus 8 ~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 8 TSSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667788888888777777777777666666555555544443 12233344445566667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 362 MDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 362 ~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
.+-+=+...++.+|+..+.|+++.|
T Consensus 88 LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 88 LELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHH
Confidence 7777777777778888888888777
No 113
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.12 E-value=9.8 Score=44.06 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Q psy12517 252 IDLLRHELDNMKAKCEKLEREKSD 275 (1286)
Q Consensus 252 i~~lr~el~~~k~rce~~e~eks~ 275 (1286)
-..+..++..++++.+++..+...
T Consensus 76 ~~~~~~~l~~l~~~~~~l~a~~~~ 99 (423)
T TIGR01843 76 ATDVEADAAELESQVLRLEAEVAR 99 (423)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHH
Confidence 346778888899888887766553
No 114
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.12 E-value=22 Score=44.92 Aligned_cols=117 Identities=14% Similarity=0.235 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHHHH----hHHHHHhHHHhHHHHHHhhHHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 677 RELNQLREELTQLKKEAQR----NAEKVTKLERDKTSLEENLKSKETQMT---KTISDLQTKCSTLEKSLTAEQKQKALK 749 (1286)
Q Consensus 677 ~q~~qL~eEL~~Eqe~~Qk----lE~~rk~LE~qvKELq~RL~E~Es~aK---k~I~kLEaRI~eLEeeLe~EqRek~ea 749 (1286)
..+++|+.-+..-.....+ -|..|..|...+..|+.....-+...+ ..|..+..++.+++.++.
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~--------- 464 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIR--------- 464 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3455566555554444433 366777777777777777665554442 334555555555554443
Q ss_pred HHHHHhhhhHHHHhhhhccc------c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy12517 750 EKELKTKESEINVLKNQSSD------N--VTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILE 811 (1286)
Q Consensus 750 ~K~~RK~ERrIKEL~~Q~ee------k--n~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae 811 (1286)
.+|..++.|....+- + =+.|+-|.++..+.|-++ +...+.--|.||.++.-+.
T Consensus 465 -----~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~e----I~KIl~DTr~lQkeiN~l~ 525 (594)
T PF05667_consen 465 -----QKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEE----IEKILSDTRELQKEINSLT 525 (594)
T ss_pred -----HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 223333333332221 1 278888999886666544 4455555667777777665
No 115
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.87 E-value=14 Score=42.02 Aligned_cols=88 Identities=20% Similarity=0.382 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 299 LQQRVNELKTENEDLNDEKKSLSLRVRELETEAA---AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYL 375 (1286)
Q Consensus 299 LQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQK---kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KEL 375 (1286)
++..+..+.+++..++.++.-.+.++..++.++. ....+..+..++.-+..+..+++..+..+++.++.++.++..+
T Consensus 50 ~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l 129 (239)
T COG1579 50 LEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433 1113333344444444444444444444444444444444444
Q ss_pred HHHHHHHHhhh
Q psy12517 376 EEEMDEMQDHF 386 (1286)
Q Consensus 376 ReEmEELrDs~ 386 (1286)
+..+..+...+
T Consensus 130 ~~~~~~~e~~~ 140 (239)
T COG1579 130 KERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 116
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.67 E-value=29 Score=44.77 Aligned_cols=198 Identities=21% Similarity=0.224 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q psy12517 450 ERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLG 529 (1286)
Q Consensus 450 ~~I~eLEreLk~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~~~~a~~~kkKLE~dL~ElE~kle~ank~k~ealk 529 (1286)
.-|..|++.|...+.=...|...|++.+..|+-.. ..=-.....+..|..++....+-..
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~----------------~als~q~eki~~L~e~l~aL~~l~~---- 324 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQ----------------GALSEQQEKINRLTEQLDALRKLQE---- 324 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHhhhcc----
Confidence 35677888887777666777777777776664221 1111223344555555544443111
Q ss_pred CCCCCCccccchhhhhccCCCCcchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHH
Q psy12517 530 ALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRA 609 (1286)
Q Consensus 530 ql~K~~~~~k~~~~sl~r~gsqe~~k~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs 609 (1286)
.++. ........-.+|..+...+..++-- -.-|.|+++.+..++ ..|+. +-+.|..++..+..
T Consensus 325 ----~ke~-~~~~d~~~~~~s~~d~~~ye~Di~~----~eiLe~Ky~vav~Ev-~~Lk~-------ELk~Lk~k~~~~~~ 387 (717)
T PF09730_consen 325 ----DKEQ-QSAEDSEKERDSHEDGDYYEVDING----LEILECKYKVAVSEV-IQLKA-------ELKALKSKYNELEE 387 (717)
T ss_pred ----chhh-hhhhhcccccccccccchhhhcccc----HHHHHHHHHHHHHHH-HHHHH-------HHHHHHHHHHHHHH
Confidence 0000 0011222334444443333333221 123788888888887 44443 22334444444444
Q ss_pred hhhhhHHHHHHHHHhhhhhhhhHHHHHhhhchHHHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHH
Q psy12517 610 ESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQL 689 (1286)
Q Consensus 610 ~ae~E~~EL~eELesL~sk~ssLe~eKRKLE~dqLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~E 689 (1286)
....+...+..++..+..++..++...+. -++.+..++.++..+. ..+..+...+.++ ..++-.+.++|.+-
T Consensus 388 ~~~~ek~~~~~e~q~L~ekl~~lek~~re-----~qeri~~LE~ELr~l~--~~A~E~q~~LnsA-QDELvtfSEeLAqL 459 (717)
T PF09730_consen 388 RYKQEKDRLESEVQNLKEKLMSLEKSSRE-----DQERISELEKELRALS--KLAGESQGSLNSA-QDELVTFSEELAQL 459 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHH--HHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 44445555555555555555444332222 2344555555555554 4444444412111 23455555555554
Q ss_pred HHH
Q psy12517 690 KKE 692 (1286)
Q Consensus 690 qe~ 692 (1286)
--|
T Consensus 460 YHH 462 (717)
T PF09730_consen 460 YHH 462 (717)
T ss_pred HHH
Confidence 444
No 117
>KOG0995|consensus
Probab=93.64 E-value=26 Score=43.98 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=50.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy12517 309 ENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFRE 388 (1286)
Q Consensus 309 EIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rE 388 (1286)
...++++|+...+..+..++.+. +.+-..+..+...|++..++++.++.+++.|+..++--.=+.
T Consensus 267 ~~~~L~~D~nK~~~y~~~~~~k~-------------~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~-- 331 (581)
T KOG0995|consen 267 KKARLQDDVNKFQAYVSQMKSKK-------------QHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISG-- 331 (581)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--
Confidence 35556677777777777776653 222233444555556666666666666666666555544444
Q ss_pred hhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy12517 389 DQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLE 426 (1286)
Q Consensus 389 e~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE 426 (1286)
.+|..|..+..++.+ .|-+++-+++.+-
T Consensus 332 ---~dve~mn~Er~~l~r-------~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 332 ---EDVERMNLERNKLKR-------ELNKIQSELDRLS 359 (581)
T ss_pred ---HHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 455444555444443 3444444444443
No 118
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.23 E-value=20 Score=43.52 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=21.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhhhhhhHHHHHhhhc
Q psy12517 603 QIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFE 640 (1286)
Q Consensus 603 ElekLrs~ae~E~~EL~eELesL~sk~ssLe~eKRKLE 640 (1286)
|-.++..+...++......+++|...-+.|...+.+++
T Consensus 207 E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 207 ERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344434444444555666666666666666666665
No 119
>KOG0946|consensus
Probab=93.05 E-value=15 Score=47.44 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhh---hHHHHHHHHHhhhhhhhhHHHHHhhhchH--HHHHhHHHHhhhhhhhh
Q psy12517 600 QYLQIEKVRAESST---EKTQITGELESLKSKLSALEAEKKKFETD--ILEKSSKITQLEASIRE 659 (1286)
Q Consensus 600 L~~ElekLrs~ae~---E~~EL~eELesL~sk~ssLe~eKRKLE~d--qLE~eLeE~q~E~e~~~ 659 (1286)
+..++.++..+.+. .....+..++.+......+..++.+.+.+ .|..+++...+......
T Consensus 811 ~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~lt 875 (970)
T KOG0946|consen 811 LQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELT 875 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHh
Confidence 66666666654443 23334577777777778888888877766 56666665555554444
No 120
>KOG0250|consensus
Probab=92.37 E-value=52 Score=44.08 Aligned_cols=137 Identities=20% Similarity=0.326 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhH-----HHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy12517 247 EYSDQIDLLRHELDNMKAKCEKLEREKSDI-----LLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLS 321 (1286)
Q Consensus 247 ~~~~~i~~lr~el~~~k~rce~~e~eks~i-----llrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~ 321 (1286)
...+.|..+..++.-++.+|+.++.--..| +.-++-..-+ +-.-+-+-..++.++.+...|...+..+..+.
T Consensus 225 ~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~---k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~ 301 (1074)
T KOG0250|consen 225 HAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKA---KMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQ 301 (1074)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888887776433211 1111111111 33445556666666666666666666666666
Q ss_pred HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 322 LRVRELETEAA-AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 322 qrLreLEKKQK-kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
..+....-++. ....+.+.++.+.+++.....-...++.+...+..+++++-.+..++.+...++
T Consensus 302 ~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i 367 (1074)
T KOG0250|consen 302 EKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSI 367 (1074)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555554 333455566666666666666666666666666666666666666655555555
No 121
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.31 E-value=27 Score=40.74 Aligned_cols=116 Identities=21% Similarity=0.311 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 296 LLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAA-AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRY 374 (1286)
Q Consensus 296 LekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQK-kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KE 374 (1286)
+..++.....+...+.++....+-+++.++.+-.+-. +.....++-....+++.+...+-..+.++.+...++...+..
T Consensus 8 ~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 8 LDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555554432 111222222223344444444444444444444444444444
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHH
Q psy12517 375 LEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLR 416 (1286)
Q Consensus 375 LReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLr 416 (1286)
|..++..+.... +.+.-.|+++..+.+..+.|+|...
T Consensus 88 L~~~~~~l~e~~-----~~~~~~~~~~~~ler~i~~Le~~~~ 124 (294)
T COG1340 88 LRKEYRELKEKR-----NEFNLGGRSIKSLEREIERLEKKQQ 124 (294)
T ss_pred HHHHHHHHHHHh-----hhhhccCCCHHHHHHHHHHHHHHHH
Confidence 444444444444 4444446777777777777776543
No 122
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.00 E-value=28 Score=42.12 Aligned_cols=110 Identities=17% Similarity=0.278 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhH---------------------HHHHHHHHHHHHHHH
Q psy12517 367 EMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRI---------------------LSFKLRKSERRSEQL 425 (1286)
Q Consensus 367 ELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRi---------------------Lq~kLrKaerk~EEl 425 (1286)
.+...+.+++.++.++...| -++--.+..|++.+..+...... |...+..++..+..+
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y-~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 329 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRY-TDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASL 329 (498)
T ss_pred chHHHHHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777766655 33345666667777666665322 333444444444444
Q ss_pred HHHHHHHHHHHHhhhcCCCccc-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12517 426 EAEKLEAEKKCREVCGGMEGVN-KVERIQALEKELKLANETAEKLQKDLKEAT 477 (1286)
Q Consensus 426 E~E~~~~E~k~lrle~~~~gv~-~~~~I~eLEreLk~akEvs~rLq~eLeelE 477 (1286)
.+.+..+.....++......+. ....+..|+++++.++..=..+...++++.
T Consensus 330 ~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 330 EARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333333321111111 113457777777777776666666666554
No 123
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.88 E-value=31 Score=40.41 Aligned_cols=203 Identities=19% Similarity=0.223 Sum_probs=117.9
Q ss_pred hhhhHHHHHhhhchH-HHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHHh
Q psy12517 628 KLSALEAEKKKFETD-ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERD 706 (1286)
Q Consensus 628 k~ssLe~eKRKLE~d-qLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~q 706 (1286)
++...+.+++-++.- .+.+..+..+..+.+.+ +.+.+.+.. + ..|+.-|.+|.+...+...+----+..||..
T Consensus 19 k~q~qekE~ky~ediei~Kekn~~Lqk~lKLne--E~ltkTi~q---y-~~QLn~L~aENt~L~SkLe~EKq~kerLEtE 92 (305)
T PF14915_consen 19 KNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNE--ETLTKTIFQ---Y-NGQLNVLKAENTMLNSKLEKEKQNKERLETE 92 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHH---H-hhhHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Confidence 344556777777622 77788888888888877 666666440 0 1133334444444433333333334456667
Q ss_pred HHHHHHhhHHHhhhh------h----hhHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHhhhhHHHHhhhhccc-ch
Q psy12517 707 KTSLEENLKSKETQM------T----KTISDLQTKCSTLEKSLTAE---QKQK-ALKEKELKTKESEINVLKNQSSD-NV 771 (1286)
Q Consensus 707 vKELq~RL~E~Es~a------K----k~I~kLEaRI~eLEeeLe~E---qRek-~ea~K~~RK~ERrIKEL~~Q~ee-kn 771 (1286)
|-....||.-+-... | -..+.-...+--|...+... .|.. .-.-..+-+.|.++.-|....-. ++
T Consensus 93 iES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trd 172 (305)
T PF14915_consen 93 IESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRD 172 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776554332 1 01111111111122111111 1111 11334455556666655554432 22
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhhccccc
Q psy12517 772 --------TKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMW 840 (1286)
Q Consensus 772 --------~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~~kg~~ 840 (1286)
...+|--..|-.-|+.|+|........+.-+.....+-++ ++-.++++++--|+-+|..+++-++
T Consensus 173 aLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~e----ERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 173 ALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLE----ERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223322366778899999999999999999999999999 9999999999999999988666555
No 124
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.66 E-value=21 Score=37.95 Aligned_cols=129 Identities=21% Similarity=0.209 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12517 249 SDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELE 328 (1286)
Q Consensus 249 ~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLE 328 (1286)
.++|..+|-.+-.++..+.+++. +|...++++..-..-.+..++=.-..|...|+.-..++..+...+..-=
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~--------ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v 76 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEE--------QLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTV 76 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888887766653 3445566676777788888888878888888777777777666554333
Q ss_pred HHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 329 TEAA-AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDH 385 (1286)
Q Consensus 329 KKQK-kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs 385 (1286)
.-.. ....+..+......++..+......+..+.+.+...+.+...++.....++.+
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3222 22344445555555555555556666666666655555555555555555443
No 125
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.54 E-value=12 Score=43.91 Aligned_cols=110 Identities=22% Similarity=0.358 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH----HhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy12517 248 YSDQIDLLRHELDNMKAKCEKLEREKSDILL----RRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLR 323 (1286)
Q Consensus 248 ~~~~i~~lr~el~~~k~rce~~e~eks~ill----rrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qr 323 (1286)
+.++-.+||.+...++.-+.-+|.. ..-|+ +.| ..+...+..+...+.+-..+....+.++..+..+
T Consensus 172 LEeEN~~LR~Ea~~L~~et~~~Eek-EqqLv~dcv~QL--------~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 172 LEEENEQLRSEASQLKTETDTYEEK-EQQLVLDCVKQL--------SEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHhhHHHhhccHH-HHHHHHHHHHHh--------hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444433 33333 344 2334455666666655555555555566666555
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 324 VRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 324 LreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
+-.|+++ +.......+++...|...+..-..|..|+.++++.+
T Consensus 243 ivdlQ~r--------------------~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 243 IVDLQQR--------------------CKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHH--------------------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 333444455666666666666666677777777666
No 126
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.30 E-value=13 Score=44.77 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=29.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q psy12517 244 NDNEYSDQIDLLRHELDNMKAKCEKLEREKSDI 276 (1286)
Q Consensus 244 ~~~~~~~~i~~lr~el~~~k~rce~~e~eks~i 276 (1286)
|+..+..++..++.++..++++.+|++.++..+
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999998877543
No 127
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.88 E-value=40 Score=40.87 Aligned_cols=74 Identities=11% Similarity=0.115 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy12517 248 YSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSL 322 (1286)
Q Consensus 248 ~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~q 322 (1286)
...-++-|..++..++.+.+.+|..=.+...+--..+.. ......+.+..++..+..++.++.+++.....++.
T Consensus 159 ~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~-~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 159 SDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPD-QEGDYYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777777777777777666664332211111 11123455666666666666555555554444443
No 128
>KOG0982|consensus
Probab=90.82 E-value=47 Score=40.58 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHH
Q psy12517 337 SNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLR 416 (1286)
Q Consensus 337 ~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLr 416 (1286)
...++.+..++|+-+..+...++.+.+...-....++.++..+-..++. -...+-..|..+.+..
T Consensus 306 ~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l---------------~~rm~d~Lrrfq~eke 370 (502)
T KOG0982|consen 306 DQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKL---------------RVRMNDILRRFQEEKE 370 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhH
Confidence 3344445555555555555555555554444444444443333333322 2233444455777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHH
Q psy12517 417 KSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANE 464 (1286)
Q Consensus 417 Kaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akE 464 (1286)
..+-=++++--+++++-...+.+.++-.|-.. .++-+||++++..+-
T Consensus 371 atqELieelrkelehlr~~kl~~a~p~rgrsS-aRe~eleqevkrLrq 417 (502)
T KOG0982|consen 371 ATQELIEELRKELEHLRRRKLVLANPVRGRSS-AREIELEQEVKRLRQ 417 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCchh-HHHHHHHHHHHHhcc
Confidence 77777888888888887777776644344444 344666666655443
No 129
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=90.81 E-value=29 Score=38.04 Aligned_cols=78 Identities=23% Similarity=0.352 Sum_probs=53.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 303 VNELKTENEDLNDEKKSLSLRVRELETEAAAFK------------KSNAAEREAEALRTKLAAAEGLCEELMDENEEMKK 370 (1286)
Q Consensus 303 lnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd------------k~eEld~sieELRTKLlsLE~alEEL~EeLEELKr 370 (1286)
+..||..|..++.+...+...+..|-.....+. ...++.....++-.+|.++++-|--+..+|+.+++
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRk 85 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRK 85 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666777666666666665554211 22333334567779999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy12517 371 ELRYLEEEMD 380 (1286)
Q Consensus 371 E~KELReEmE 380 (1286)
-|.....+-.
T Consensus 86 mv~~ae~er~ 95 (178)
T PF14073_consen 86 MVESAEKERN 95 (178)
T ss_pred HHHHHHHhhh
Confidence 9988665543
No 130
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.79 E-value=78 Score=43.03 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 722 TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQE 799 (1286)
Q Consensus 722 Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~ak 799 (1286)
++.++.++..+..|.+.+.. |+..++.+.+.+.++--. +..+ .+..+.-+.-.+|-..+..+-..++....+
T Consensus 214 ~~~~~~l~~~~~~Lq~~in~--kR~~~se~~~~~~~~~~~----~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~ 287 (1109)
T PRK10929 214 KKRSQQLDAYLQALRNQLNS--QRQREAERALESTELLAE----QSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQ 287 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHH----hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688888888888887774 333444444444443221 2212 222222222244444444444455555454
Q ss_pred HHHHHhhHhhhh
Q psy12517 800 YEDLTNRYDILE 811 (1286)
Q Consensus 800 yRKLQrELEeae 811 (1286)
.+.....++.+.
T Consensus 288 ~~~~~~~l~~~~ 299 (1109)
T PRK10929 288 QRQAASQTLQVR 299 (1109)
T ss_pred HHHHHHHHHHHH
Confidence 544444444443
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.45 E-value=26 Score=36.97 Aligned_cols=63 Identities=27% Similarity=0.407 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 361 LMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLE 431 (1286)
Q Consensus 361 L~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~ 431 (1286)
+.-+.++.++++..|..++..|...+ . .|.-+|.-+.+-+-.|...+.+.+.++.+||.-...
T Consensus 43 ~~~daEn~k~eie~L~~el~~lt~el-----~---~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 43 LILDAENSKAEIETLEEELEELTSEL-----N---QLELELDTLRSEKENLDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33344444444444444444444444 2 225555555555666666667777777776654433
No 132
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.37 E-value=23 Score=36.23 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12517 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEA 331 (1286)
Q Consensus 294 sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQ 331 (1286)
+++..+......+...+..+..|+......+...+.++
T Consensus 10 ~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~Y 47 (132)
T PF07926_consen 10 SELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKY 47 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566666666666666666666654
No 133
>KOG0962|consensus
Probab=90.34 E-value=88 Score=42.92 Aligned_cols=88 Identities=23% Similarity=0.244 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHH-HHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTS-LEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKALKEKEL 753 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKE-Lq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~ 753 (1286)
....+.+.++..+...|.+|..+......+.+ .+..+.-.+... -.+++..-..+..|+.+++.-++....++-.-
T Consensus 582 ~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s 661 (1294)
T KOG0962|consen 582 EIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTIDEYLDLLERLKGEIEKARKDLAMLQGRS 661 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 45677888888888888888877777655552 222222222222 25577777888888888888778777777666
Q ss_pred HhhhhHHHHhhh
Q psy12517 754 KTKESEINVLKN 765 (1286)
Q Consensus 754 RK~ERrIKEL~~ 765 (1286)
.=|++=|....-
T Consensus 662 ~~Y~k~Ie~~~~ 673 (1294)
T KOG0962|consen 662 ALYRKFIEIACR 673 (1294)
T ss_pred HHHHHHHHHHhh
Confidence 666666655544
No 134
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.20 E-value=43 Score=39.08 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhHHHHHhHHHHHHHHHhhHHHHH
Q psy12517 338 NAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFR---EDQADEYSSLKKELEQTAKNCRILSFK 414 (1286)
Q Consensus 338 eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~r---Ee~~de~~eL~KeLheleKncRiLq~k 414 (1286)
..+......+......+....+.+.+-+..+......|..++..++.... ..|.+++..|+.+|..+......+..+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~ 231 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKE 231 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444434444444444444444444444444444444433332 123344444555555554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 415 LRKSERRSEQLEAEKLEAEKKCREV 439 (1286)
Q Consensus 415 LrKaerk~EElE~E~~~~E~k~lrl 439 (1286)
+.+++.++..+.+.......++.++
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 135
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.14 E-value=32 Score=37.50 Aligned_cols=105 Identities=16% Similarity=0.274 Sum_probs=47.7
Q ss_pred hHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc---c--
Q psy12517 696 NAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD---N-- 770 (1286)
Q Consensus 696 lE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee---k-- 770 (1286)
+|.-.+-|++.+.|++.-|.++..++ ...-+....|+ ++...+...+.+++.+.......-.+ +
T Consensus 21 ~EDP~~~l~q~ird~e~~l~~a~~~~----a~~~a~~~~le-------~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~a 89 (221)
T PF04012_consen 21 AEDPEKMLEQAIRDMEEQLRKARQAL----ARVMANQKRLE-------RKLDEAEEEAEKWEKQAELALAAGREDLAREA 89 (221)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444566666777777766665443 22222223333 22233333444444444433222222 1
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy12517 771 --VTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILE 811 (1286)
Q Consensus 771 --n~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae 811 (1286)
....+.+.+..|+.+++.+...+......+.++...|.++.
T Consensus 90 l~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 90 LQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223333344555555555555555555555555555544
No 136
>KOG0980|consensus
Probab=90.05 E-value=77 Score=41.80 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=9.2
Q ss_pred CCccccCCCCCC
Q psy12517 50 DDFTVSSPSLSS 61 (1286)
Q Consensus 50 ~d~~~s~p~l~~ 61 (1286)
=+||+--|.||-
T Consensus 117 l~FH~k~p~FpG 128 (980)
T KOG0980|consen 117 LSFHAKHPVFPG 128 (980)
T ss_pred HhHhhcCCCCCC
Confidence 478888888883
No 137
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.63 E-value=2.3 Score=45.74 Aligned_cols=98 Identities=24% Similarity=0.339 Sum_probs=29.7
Q ss_pred CcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 289 SKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAA-AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEE 367 (1286)
Q Consensus 289 ~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQK-kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEE 367 (1286)
..+.++.+..++..+..++.++-.+.-....+.+++..+..+.. ....+.+....+..++..+..++..+..+.+.+.+
T Consensus 62 ~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e 141 (194)
T PF08614_consen 62 GSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKE 141 (194)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777777777777777777766666666666666544 22244555556666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy12517 368 MKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 368 LKrE~KELReEmEELrDs~ 386 (1286)
..+.+..++.|+..++-+|
T Consensus 142 k~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 142 KNKANEILQDELQALQLQL 160 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555544
No 138
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.58 E-value=6 Score=46.01 Aligned_cols=122 Identities=24% Similarity=0.356 Sum_probs=57.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 304 NELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQ 383 (1286)
Q Consensus 304 nELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELr 383 (1286)
..++.+++.+..+.+....-+..++... ........+..++..++.+..++..+++.++.+..++..++..+.
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l~~~~-------~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKLEEES-------DSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp -------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555211 122334555566666677777777777777777777777777766
Q ss_pred hhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 384 DHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 384 Ds~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
... .++ ..+-.+.-+....++.++...+..++.+.+.+....+.+.+|.
T Consensus 85 ~e~-----~~l---~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 85 EEL-----EEL---DEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 433 4444455556666666666666666666666666665555554
No 139
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.50 E-value=5.3 Score=49.97 Aligned_cols=86 Identities=24% Similarity=0.352 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Q psy12517 343 EAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRS 422 (1286)
Q Consensus 343 sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~ 422 (1286)
.+..++..+..++....+|...++++++++..|..+++.++..++ .--..++++.........|+-+|.+....+
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-----~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-----DKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666666666666666666666666662 222346777777777778888888888888
Q ss_pred HHHHHHHHHHH
Q psy12517 423 EQLEAEKLEAE 433 (1286)
Q Consensus 423 EElE~E~~~~E 433 (1286)
++|+..+..++
T Consensus 498 e~L~~~l~~l~ 508 (652)
T COG2433 498 EELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHH
Confidence 88877776664
No 140
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=89.24 E-value=7.8 Score=44.70 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 313 LNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLC-------EELMDENEEMKKELRYLEEEMDEMQDH 385 (1286)
Q Consensus 313 Le~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~al-------EEL~EeLEELKrE~KELReEmEELrDs 385 (1286)
.++-+.+++.++++.+.+ +.+++.+|.+|+++|..+...| .|++-.|.++++||++|+.-++.|+.+
T Consensus 66 KEV~iRHLkakLkes~~~------l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 66 KEVCIRHLKAKLKESENR------LHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457788888888887775 5668889999998888877665 356678999999999999999999999
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHH
Q psy12517 386 FREDQADEYSSLKKELEQTAKNCRILSFKLRKSE 419 (1286)
Q Consensus 386 ~rEe~~de~~eL~KeLheleKncRiLq~kLrKae 419 (1286)
+.|-|.+ ++|=+-.+|=-.+-|+-=|.-||
T Consensus 140 L~ekDkG----iQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 140 LAEKDKG----IQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred hchhhhh----HHHHHhhhhhhHhHHHHHHHHHH
Confidence 9655433 35655556555555555555443
No 141
>PRK11281 hypothetical protein; Provisional
Probab=89.18 E-value=1e+02 Score=42.00 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 722 TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNV--TKQITELKTQYEQEIKKLEDTLVQERQE 799 (1286)
Q Consensus 722 Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn--~~rlqEl~KqyKRQlEEaEEea~~~~ak 799 (1286)
+..++.++..|..|.+.+..-+ ...+++.+...++- + ..+....| ....-+.-.+|-..+..+-..++....+
T Consensus 233 ~~~~~~~~~~~~~lq~~in~kr--~~~se~~~~~a~~~--~-~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~ 307 (1113)
T PRK11281 233 TARIQRLEHQLQLLQEAINSKR--LTLSEKTVQEAQSQ--D-EAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQ 307 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhh--h-hhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777777776666432 22333333222110 0 00011122 2222222244444455555555555555
Q ss_pred HHHHHhhHhhhh
Q psy12517 800 YEDLTNRYDILE 811 (1286)
Q Consensus 800 yRKLQrELEeae 811 (1286)
.......++.+.
T Consensus 308 ~~~~~~~l~~~~ 319 (1113)
T PRK11281 308 NLRVKNWLDRLT 319 (1113)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 142
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.80 E-value=30 Score=35.39 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=41.3
Q ss_pred hhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHH
Q psy12517 391 ADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQ 470 (1286)
Q Consensus 391 ~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq 470 (1286)
+..++.|+.++..+......|...+..+...+.+.+ ..|+.....|+ ..|.+++..+.....--.=||
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le---------~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESE---ASWEEQKEQLE---------KELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555554443 34444455554 356666666666666666677
Q ss_pred HHHHHH
Q psy12517 471 KDLKEA 476 (1286)
Q Consensus 471 ~eLeel 476 (1286)
.+|+.+
T Consensus 126 ~QlE~l 131 (132)
T PF07926_consen 126 DQLESL 131 (132)
T ss_pred HHHhhc
Confidence 777654
No 143
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.72 E-value=6.5 Score=42.42 Aligned_cols=111 Identities=22% Similarity=0.302 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy12517 247 EYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRE 326 (1286)
Q Consensus 247 ~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLre 326 (1286)
.+...+..|+.+|..+...|.. +--+|. ....++..++..+......|..+..++..+..++..
T Consensus 71 ~le~~~~~l~~ELael~r~~~e--------l~~~L~--------~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGE--------LAQQLV--------ELNDELQELEKELSEKERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccc--------cccccc--------ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899998888774433 223332 223456677777777777777777888888877777
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 327 LETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEM 379 (1286)
Q Consensus 327 LEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEm 379 (1286)
|+.. +.+....+..++.++.++.-.+--+.+.+..++.++.+|-...
T Consensus 135 l~~~------l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 135 LEEE------LKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7775 3444555677777777777777777777777777777776663
No 144
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.04 E-value=57 Score=37.64 Aligned_cols=114 Identities=14% Similarity=0.182 Sum_probs=68.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHhhhchHHHHHhHHHHhhhhhhhh-hhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHH
Q psy12517 616 TQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIRE-ERERATDLSVKAGSAASRELNQLREELTQLKKEAQ 694 (1286)
Q Consensus 616 ~EL~eELesL~sk~ssLe~eKRKLE~dqLE~eLeE~q~E~e~~~-~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~Q 694 (1286)
.++......|...|..|..++.-.|.. -.. ..+... -++.+..++..+.+.+..++.++.++|.+-.+
T Consensus 9 ~el~~h~~~L~~~N~~L~~~IqdtE~s-t~~-------~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~ee--- 77 (258)
T PF15397_consen 9 QELKKHEDFLTKLNKELIKEIQDTEDS-TAL-------KVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEE--- 77 (258)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHhh-HHH-------HHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH---
Confidence 345555555666666666666666522 111 111111 33566677776777778888888888865443
Q ss_pred HhHHHHHhHHHhHHHHHHhhHHHhhhh-------------hh-hHHHHHHHHHHHHHHHH
Q psy12517 695 RNAEKVTKLERDKTSLEENLKSKETQM-------------TK-TISDLQTKCSTLEKSLT 740 (1286)
Q Consensus 695 klE~~rk~LE~qvKELq~RL~E~Es~a-------------Kk-~I~kLEaRI~eLEeeLe 740 (1286)
+.+.--..|+.|+..|.++|..+-... |. +|+.|...|..|-.+..
T Consensus 78 k~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qq 137 (258)
T PF15397_consen 78 KEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQ 137 (258)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555678888888888887765443 33 56676666666554433
No 145
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.93 E-value=17 Score=41.12 Aligned_cols=108 Identities=23% Similarity=0.353 Sum_probs=68.3
Q ss_pred HHhHHHHHHhhHHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHH
Q psy12517 704 ERDKTSLEENLKSKETQMT---KTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITEL 778 (1286)
Q Consensus 704 E~qvKELq~RL~E~Es~aK---k~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl 778 (1286)
|+...+|+.||..++..++ ..+...+.++..|+.++...+.++..+.+....++..+..|..+... ..-.+|..-
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666553 33555577888888888877778877887777788888888777765 333445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy12517 779 KTQYEQEIKKLEDTLVQERQEYEDLTNRYDILE 811 (1286)
Q Consensus 779 ~KqyKRQlEEaEEea~~~~akyRKLQrELEeae 811 (1286)
+..|...+..++++...-......|+.++..+.
T Consensus 84 ~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 84 LREAEAEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666677777777776665
No 146
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.79 E-value=62 Score=37.80 Aligned_cols=41 Identities=37% Similarity=0.357 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCRE 438 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lr 438 (1286)
++.|.+++..+..|..++.++..+..++.++.++++..+..
T Consensus 229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666666665544443
No 147
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=87.52 E-value=66 Score=37.78 Aligned_cols=75 Identities=24% Similarity=0.368 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12517 344 AEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSE 423 (1286)
Q Consensus 344 ieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~E 423 (1286)
..+++.++..+.+..++.-.++-.+-.+.++++.+.+.|...| -++ ++..+++....+-++-+++.++..+-
T Consensus 174 ~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~-----ve~---~~~~~e~~ee~~~~~~elre~~k~ik 245 (294)
T COG1340 174 AREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEF-----VEL---SKKIDELHEEFRNLQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555566666666666655 444 66666666667777777776666665
Q ss_pred HHH
Q psy12517 424 QLE 426 (1286)
Q Consensus 424 ElE 426 (1286)
.+.
T Consensus 246 ~l~ 248 (294)
T COG1340 246 ALR 248 (294)
T ss_pred HHH
Confidence 543
No 148
>PRK10698 phage shock protein PspA; Provisional
Probab=87.46 E-value=31 Score=38.44 Aligned_cols=148 Identities=13% Similarity=0.217 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhh---------------HHHHHHHHHHHHHHHHHHHH
Q psy12517 680 NQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKT---------------ISDLQTKCSTLEKSLTAEQK 744 (1286)
Q Consensus 680 ~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~---------------I~kLEaRI~eLEeeLe~EqR 744 (1286)
-.|.+.|.+-+..+...=..++.+++++.+++..+.+.+..+... -.....++..|+.+++....
T Consensus 34 ~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~ 113 (222)
T PRK10698 34 QEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDE 113 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777888888888888888877665110 11236778888888888777
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhccc--------chHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH-HHHH
Q psy12517 745 QKALKEKELKTKESEINVLKNQSSD--------NVTKQITELK------------TQYEQEIKKLEDTLVQERQE-YEDL 803 (1286)
Q Consensus 745 ek~ea~K~~RK~ERrIKEL~~Q~ee--------kn~~rlqEl~------------KqyKRQlEEaEEea~~~~ak-yRKL 803 (1286)
--......+.+++.+|.++..+-.. ....++++.. ..|.+.|++.|-++....-. -..|
T Consensus 114 ~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l 193 (222)
T PRK10698 114 TLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHGFGKQKSL 193 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhccCCCCH
Confidence 7777888888888888877776553 1233344443 45778888888777664211 1236
Q ss_pred HhhHhhhhhhhhHHHHHHHHHHHHHHHhh
Q psy12517 804 TNRYDILEGEHVDIKASLVKEKENNHGRL 832 (1286)
Q Consensus 804 QrELEeae~~~vE~ad~lE~ev~kLrskl 832 (1286)
..++..++ .....+.++..|++++
T Consensus 194 ~~e~~~le-----~~~~ve~ELa~LK~~~ 217 (222)
T PRK10698 194 DQQFAELK-----ADDEISEQLAALKAKM 217 (222)
T ss_pred HHHHHHhh-----ccchHHHHHHHHHHHh
Confidence 66666664 2345778888888765
No 149
>KOG4360|consensus
Probab=87.29 E-value=84 Score=39.35 Aligned_cols=139 Identities=22% Similarity=0.240 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 296 LLKLQQRVNELKTENEDLNDEKKSLSLRVRELETE-AAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRY 374 (1286)
Q Consensus 296 LekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKK-QKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KE 374 (1286)
+..|+.++..+..++..+.++...+...----+.+ +... .-.-.....+.+++..+...++....++--...++-.
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y---~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~sk 237 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLY---GDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSK 237 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777766655443333332 2222 1122233444466666666666666666666566665
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHH
Q psy12517 375 LEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQA 454 (1286)
Q Consensus 375 LReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~e 454 (1286)
|..++-+++... -.. .. +|+- |-.=|..+.-+-+++++|+..+++++++++ +-+.+
T Consensus 238 Llsql~d~qkk~-----k~~---~~-----Ekee--l~~~Lq~~~da~~ql~aE~~EleDkyAE~m---------~~~~E 293 (596)
T KOG4360|consen 238 LLSQLVDLQKKI-----KYL---RH-----EKEE--LDEHLQAYKDAQRQLTAELEELEDKYAECM---------QMLHE 293 (596)
T ss_pred HHHHHHhhHHHH-----HHH---HH-----HHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------HHHHH
Confidence 665555555544 111 11 1111 112233444555666667777777777765 23355
Q ss_pred HHHHHHH
Q psy12517 455 LEKELKL 461 (1286)
Q Consensus 455 LEreLk~ 461 (1286)
-|.+|+.
T Consensus 294 aeeELk~ 300 (596)
T KOG4360|consen 294 AEEELKC 300 (596)
T ss_pred HHHHHHh
Confidence 5666543
No 150
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.27 E-value=1e+02 Score=39.67 Aligned_cols=62 Identities=11% Similarity=0.199 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 412 SFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDK 479 (1286)
Q Consensus 412 q~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEek 479 (1286)
+....-++++...+++.+..++.+...+- .....+..|+++.+.+..+=..|...++++...
T Consensus 344 ~~~~~~a~~~~~~L~~~l~~~~~~~~~~~------~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 344 LMQADAAQARESQLVSDVNQLKAASAQAG------EQQVDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555555555555554432 111355888888888888777777777666533
No 151
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.20 E-value=43 Score=35.37 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 347 LRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 347 LRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
+...++++++.++.....++.+..+..+-+.++..|...+
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el 61 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLILDAENSKAEIETLEEEL 61 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443333
No 152
>KOG1853|consensus
Probab=86.83 E-value=66 Score=37.12 Aligned_cols=80 Identities=23% Similarity=0.269 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy12517 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAE 428 (1286)
Q Consensus 349 TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E 428 (1286)
++|..++...-.+...+.-+.-++..+.+.+++-+.+| .-+..-|..+|-++.-.|-.|.-.+|+++.+.+-||-.
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~----y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQF----YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 34444444444444444555555555555555555555 23344568888888889999999999998888888766
Q ss_pred HHHH
Q psy12517 429 KLEA 432 (1286)
Q Consensus 429 ~~~~ 432 (1286)
.-+.
T Consensus 128 kRat 131 (333)
T KOG1853|consen 128 KRAT 131 (333)
T ss_pred hhhh
Confidence 5543
No 153
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.70 E-value=11 Score=47.45 Aligned_cols=88 Identities=23% Similarity=0.425 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHH---HHHHHhhHHHHHHHHHH
Q psy12517 343 EAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELE---QTAKNCRILSFKLRKSE 419 (1286)
Q Consensus 343 sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLh---eleKncRiLq~kLrKae 419 (1286)
.+......+..+++..+.+..++.+|+.++.+|+.+++.|.+.+ +.+ +++++ ...+..|.++-+...++
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l-----~~~---~r~~~~~~~~~rei~~~~~~I~~L~ 487 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESEL-----ERF---RREVRDKVRKDREIRARDRRIERLE 487 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34555688889999999999999999999999999999999888 776 66665 23344444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy12517 420 RRSEQLEAEKLEAEKKCRE 438 (1286)
Q Consensus 420 rk~EElE~E~~~~E~k~lr 438 (1286)
+++.+-.-....++.++.+
T Consensus 488 ~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 488 KELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555444333333333333
No 154
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.63 E-value=89 Score=38.36 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=28.3
Q ss_pred hhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 389 DQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEA 432 (1286)
Q Consensus 389 e~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~ 432 (1286)
++..+-+.|.+-+.+-.|+.+.|+..+..-+.++++|-+.-..+
T Consensus 193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L 236 (420)
T COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRL 236 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44555566667777777777777777777777777765444443
No 155
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.48 E-value=11 Score=44.03 Aligned_cols=80 Identities=29% Similarity=0.330 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHH
Q psy12517 339 AAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKS 418 (1286)
Q Consensus 339 Eld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKa 418 (1286)
.+..+..++..+|..++...+++..++..++.+...+..+-...-..+ ..+..++-+.......|..++.-+
T Consensus 54 ~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~--------n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 54 KLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREY--------NELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777788888888888888888877776655544444 444888888888888888888888
Q ss_pred HHHHHHHH
Q psy12517 419 ERRSEQLE 426 (1286)
Q Consensus 419 erk~EElE 426 (1286)
..+++.|.
T Consensus 126 ~~~L~~L~ 133 (314)
T PF04111_consen 126 SNQLDRLR 133 (314)
T ss_dssp HHHHHCHH
T ss_pred HHHHHHHH
Confidence 88888763
No 156
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=86.21 E-value=76 Score=37.20 Aligned_cols=91 Identities=14% Similarity=0.217 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM----TKTISDLQTKCSTLEKSLTAEQKQKALKEKEL 753 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a----Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~ 753 (1286)
+..++..|+...-....+||..=..|.++||.|..-....-... +-...++.+.|.++...++.-.-.+.......
T Consensus 58 ek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN 137 (309)
T PF09728_consen 58 EKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREEN 137 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 66777777777666677777776677777777764332222211 34466667777777777775555555555555
Q ss_pred HhhhhHHHHhhhhcc
Q psy12517 754 KTKESEINVLKNQSS 768 (1286)
Q Consensus 754 RK~ERrIKEL~~Q~e 768 (1286)
-.+--++|.|.-|.+
T Consensus 138 ~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 138 EELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555556666665555
No 157
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.17 E-value=82 Score=37.54 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=26.8
Q ss_pred hHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHH
Q psy12517 702 KLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQK 744 (1286)
Q Consensus 702 ~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqR 744 (1286)
.|..++.+++.++.++-... -..|..+.++|..|+.+|..+.+
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~ 303 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIK 303 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666655554433 24577788888888888776544
No 158
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.78 E-value=33 Score=36.42 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy12517 295 ELLKLQQRVNELKTENEDLNDEKKSLSLR 323 (1286)
Q Consensus 295 ELekLQKklnELQqEIEDLe~Dkk~L~qr 323 (1286)
++...++.++.+..+++++...+..+...
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~ 110 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESE 110 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333333
No 159
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.78 E-value=22 Score=36.47 Aligned_cols=44 Identities=27% Similarity=0.335 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 339 AAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEM 382 (1286)
Q Consensus 339 Eld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEEL 382 (1286)
.+....+++..++..+-..+.+-.+.+++|+.-+..++.-+...
T Consensus 72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555544433
No 160
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=85.63 E-value=47 Score=35.72 Aligned_cols=126 Identities=19% Similarity=0.246 Sum_probs=91.1
Q ss_pred hhhhhHHHHHHHHHhhhhhhhhHHHHHhhhchH--HHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHH
Q psy12517 610 ESSTEKTQITGELESLKSKLSALEAEKKKFETD--ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELT 687 (1286)
Q Consensus 610 ~ae~E~~EL~eELesL~sk~ssLe~eKRKLE~d--qLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~ 687 (1286)
.+..|...+..+|..+...+.....+-.+|+.. .....|-+...+...+. -+=.+.|-. .+..++-.|.
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ys-E~dik~AYe--------~A~~lQ~~L~ 94 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYS-EEDIKEAYE--------EAHELQVRLA 94 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-HHHHHHHHH--------HHHHHHHHHH
Confidence 455566677778888888888888888888765 55666666655554432 134555555 5667777888
Q ss_pred HHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHH
Q psy12517 688 QLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQK 744 (1286)
Q Consensus 688 ~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqR 744 (1286)
..|+.-..|-.-|..||+.++.|..-+..+|..+ .-.+.-|.+-+..+-..|+.-+.
T Consensus 95 ~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~ 154 (159)
T PF05384_consen 95 MLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQ 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888889999999999999999999877 45566677777777766665443
No 161
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.15 E-value=65 Score=35.50 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 355 EGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEK 434 (1286)
Q Consensus 355 E~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~ 434 (1286)
......+.+.|..+..++.+|+..+....... -.+..+..-+..+++..+-|..+-.-++.++..++.|+..+..
T Consensus 54 ~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK-----~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 54 SQENKRLSEPLKKAEEEVEELRKQLKNYEKDK-----QSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444443333 4444445555555555555555555555555566555555544
Q ss_pred HHH
Q psy12517 435 KCR 437 (1286)
Q Consensus 435 k~l 437 (1286)
++.
T Consensus 129 kf~ 131 (201)
T PF13851_consen 129 KFE 131 (201)
T ss_pred HHH
Confidence 443
No 162
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.10 E-value=48 Score=42.46 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHH
Q psy12517 780 TQYEQEIKKLEDTLVQ---ERQEYEDLTNRYDILEGEHVDIKASLVKEKENNH 829 (1286)
Q Consensus 780 KqyKRQlEEaEEea~~---~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLr 829 (1286)
+.+..++.+++..+.. ....|..|+|+.+-++ ..-..+-...+..+
T Consensus 355 ~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~----~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 355 SQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKR----QLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5556666666555543 3567888888888877 44444444444433
No 163
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=84.89 E-value=87 Score=38.96 Aligned_cols=108 Identities=15% Similarity=0.223 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----hhhhccc--------chHHHHHHHHHHHHHHHHHHH
Q psy12517 723 KTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINV----LKNQSSD--------NVTKQITELKTQYEQEIKKLE 790 (1286)
Q Consensus 723 k~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKE----L~~Q~ee--------kn~~rlqEl~KqyKRQlEEaE 790 (1286)
.....+++.+++|+..|+.+++...+....+...+.+++. |..++=+ .|...+..+++=++.||+..+
T Consensus 74 ~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~ 153 (475)
T PRK10361 74 SINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFR 153 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3456667777777777777777776655555555554443 2222222 233334444444455555444
Q ss_pred HHHHHHH----HHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 791 DTLVQER----QEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 791 Eea~~~~----akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
..+.... ..|-.|..++..+. +.+.++..+-.+|-.=|+.
T Consensus 154 ~~v~~~~~~~~~~~~~L~~qi~~L~----~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 154 RQVQDSFGKEAQERHTLAHEIRNLQ----QLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcC
Confidence 4444332 33567788888887 8888888888888766644
No 164
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.13 E-value=58 Score=36.92 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy12517 352 AAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEA 427 (1286)
Q Consensus 352 lsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~ 427 (1286)
..++..+..|.........+...|..++.++...+ ..+ .-....-++.+..|+.+|..++...+..-.
T Consensus 57 ~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i-----~~l---~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 57 QEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEI-----ARL---EEESERKEEEAEELQEELEEAREDEEEAKE 124 (246)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443333 222 444444555555556555555555555433
No 165
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.06 E-value=43 Score=34.14 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHH
Q psy12517 347 LRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKS 418 (1286)
Q Consensus 347 LRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKa 418 (1286)
|+.-+..+...-......+.+++..|.++...+++.+-.. .++ ...+-..+|-+-||+.+|-++
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak-----~~l---~~r~~k~~~dka~lel~l~e~ 105 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAK-----LEL---ESRLLKAQKDKAILELKLAEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHhhhhHHHHHHHhh
Confidence 4444444444444444455555555555555555554444 344 666666777777777666554
No 166
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.00 E-value=1.5e+02 Score=38.74 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHH---------HHHhHHHhHHHHHHhhHHHhhhh------hhhHHHHHHHHHHHHHHHHHH
Q psy12517 678 ELNQLREELTQLKKEAQRNAE---------KVTKLERDKTSLEENLKSKETQM------TKTISDLQTKCSTLEKSLTAE 742 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~---------~rk~LE~qvKELq~RL~E~Es~a------Kk~I~kLEaRI~eLEeeLe~E 742 (1286)
...+.+.|+.+.|++++.+-. .-.++.+|+-+|+.+|+++.... +....+-+++.+.||-+..++
T Consensus 638 ~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~vler~~~~~ 717 (1104)
T COG4913 638 KIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLERQYQQE 717 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777766555432 23466799999999998886442 677777889999999888888
Q ss_pred HHHHHHHHHHHHhhhhHHHH
Q psy12517 743 QKQKALKEKELKTKESEINV 762 (1286)
Q Consensus 743 qRek~ea~K~~RK~ERrIKE 762 (1286)
--+....-+.+.+.+-..+-
T Consensus 718 ~~e~~~~k~~lkrA~~~~~k 737 (1104)
T COG4913 718 VTECAGLKKDLKRAAMLSRK 737 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777766666665554443
No 167
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=83.96 E-value=81 Score=35.59 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHH
Q psy12517 336 KSNAAEREAEALR 348 (1286)
Q Consensus 336 k~eEld~sieELR 348 (1286)
.+.++..-..++|
T Consensus 128 ~l~ea~~mL~emr 140 (264)
T PF06008_consen 128 ALAEAQRMLEEMR 140 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 168
>KOG0999|consensus
Probab=83.89 E-value=1.3e+02 Score=38.03 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 297 LKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK---------KSNAAEREAEALRTKLAAAEGLCEELMDENEE 367 (1286)
Q Consensus 297 ekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd---------k~eEld~sieELRTKLlsLE~alEEL~EeLEE 367 (1286)
..|++.+.+|+.+.+-...+++..++.+......++... .++|-..-...+-.+++.+++.+-.+...+.+
T Consensus 46 ~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~ 125 (772)
T KOG0999|consen 46 EDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTN 125 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777666665555111 33333333444446666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy12517 368 MKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 368 LKrE~KELReEmEELrDs~ 386 (1286)
.+.+++.|-....++.+.-
T Consensus 126 ~q~E~erl~~~~sd~~e~~ 144 (772)
T KOG0999|consen 126 VQEENERLEKVHSDLKESN 144 (772)
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 6666666655555555443
No 169
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=83.43 E-value=82 Score=35.25 Aligned_cols=79 Identities=23% Similarity=0.316 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy12517 247 EYSDQIDLLRHE-------LDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKS 319 (1286)
Q Consensus 247 ~~~~~i~~lr~e-------l~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~ 319 (1286)
++..-|..++.+ ...++.+|+.+........ .+ |+. -.+|-+.-+...++.......+|..+..+.+.
T Consensus 6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~--~i--~~e-~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq 80 (207)
T PF05010_consen 6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMR--KI--MEE-YEKTIAQMIEEKQKQKELSEAEIQKLLKERDQ 80 (207)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH--HH--HHH-HHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHH
Confidence 455556666655 7788888887776554332 21 111 12334444555666666666666666666666
Q ss_pred HHHHHHHHHHH
Q psy12517 320 LSLRVRELETE 330 (1286)
Q Consensus 320 L~qrLreLEKK 330 (1286)
+...+..++.-
T Consensus 81 ~~~dL~s~E~s 91 (207)
T PF05010_consen 81 AYADLNSLEKS 91 (207)
T ss_pred HHHHHHHHHhh
Confidence 66666666653
No 170
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.78 E-value=1.3e+02 Score=37.27 Aligned_cols=36 Identities=31% Similarity=0.303 Sum_probs=27.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 401 LEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKC 436 (1286)
Q Consensus 401 LheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~ 436 (1286)
++++.-.+-.++-++..++.+++++..+.+..+...
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~ 311 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL 311 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777888888888888888888777766543
No 171
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=82.32 E-value=84 Score=34.59 Aligned_cols=146 Identities=26% Similarity=0.362 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhhhhhhHH--HHhhhccccccCc-CcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 259 LDNMKAKCEKLEREKSDIL--LRRLASMETTTSK-TTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK 335 (1286)
Q Consensus 259 l~~~k~rce~~e~eks~il--lrrl~~~~t~~~~-t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd 335 (1286)
|..+..+.-++|-||+.-- +..|+. +|.-.+ ...+....-....+.+.....|+...+..+..+++-||+..
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~-et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQL---- 80 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSR-ETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQL---- 80 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHH----
Confidence 4556666666666665433 444421 111111 11222233333344555557788899999999999999864
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHH
Q psy12517 336 KSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKL 415 (1286)
Q Consensus 336 k~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kL 415 (1286)
+-+|.-+..++..--.+.+.--.+.++.. ....+++..+ .-|+-+++.|=.|..--
T Consensus 81 ---------eyMRkmv~~ae~er~~~le~q~~l~~e~~---~~~~~~~~kl------------ekLe~LE~E~~rLt~~Q 136 (178)
T PF14073_consen 81 ---------EYMRKMVESAEKERNAVLEQQVSLQRERQ---QDQSELQAKL------------EKLEKLEKEYLRLTATQ 136 (178)
T ss_pred ---------HHHHHHHHHHHHhhhHHHHHHHHHHHHhc---cchhhHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 33333333333332222222222222211 1122223333 34566677777777666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12517 416 RKSERRSEQLEAEKLEAE 433 (1286)
Q Consensus 416 rKaerk~EElE~E~~~~E 433 (1286)
.-++.++.+||.-+...|
T Consensus 137 ~~ae~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 137 SLAETKIKELEEKLQEEE 154 (178)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666665555444
No 172
>KOG1003|consensus
Probab=82.01 E-value=92 Score=34.84 Aligned_cols=114 Identities=25% Similarity=0.338 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH----HHhHHHHHHHHHhhHHHHHHHHHHH
Q psy12517 345 EALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYS----SLKKELEQTAKNCRILSFKLRKSER 420 (1286)
Q Consensus 345 eELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~----eL~KeLheleKncRiLq~kLrKaer 420 (1286)
.+.-.+|--.++.++...+..+..+-.+.+|..++.-+...+ .-+. .+-..++....-.|.|.-+|++++.
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nl-----k~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~ 158 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNL-----KSLSAKEEKLEQKEEKYEEELKELTDKLKEAET 158 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH-----HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 333344555555555555555555555555555555444443 2110 1133455667778888889999998
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 421 RSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDK 479 (1286)
Q Consensus 421 k~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEek 479 (1286)
+-+.+|-.. +-|+ -.+-.||..|..+++.-+.++.+|+.+=..
T Consensus 159 rAE~aERsV-------akLe---------ke~DdlE~kl~~~k~ky~~~~~eLD~~~~~ 201 (205)
T KOG1003|consen 159 RAEFAERRV-------AKLE---------KERDDLEEKLEEAKEKYEEAKKELDETLQE 201 (205)
T ss_pred hHHHHHHHH-------HHHc---------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 888876333 3333 235667777777777777888888776433
No 173
>KOG1853|consensus
Probab=81.77 E-value=25 Score=40.35 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=58.4
Q ss_pred CCCcchhHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHH-------hhhhhHHHHHH
Q psy12517 549 GSQEDPTVLMRDLQD-SMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRA-------ESSTEKTQITG 620 (1286)
Q Consensus 549 gsqe~~k~lqreLqd-s~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs-------~ae~E~~EL~e 620 (1286)
+++.++.+-.+++|+ ++|-++.|-.||..+|-+. +. ++.+|.-|.-+++.++. +..+...+|.+
T Consensus 27 q~f~~~reEl~EFQegSrE~EaelesqL~q~etrn-rd-------l~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Led 98 (333)
T KOG1853|consen 27 QHFLQMREELNEFQEGSREIEAELESQLDQLETRN-RD-------LETRNQRLTTEQERNKEKQEDQRVQFYQQESQLED 98 (333)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777778775 4677888999998888776 33 34455556556554433 45556777888
Q ss_pred HHHhhhhhhhhHHHHHhhhc
Q psy12517 621 ELESLKSKLSALEAEKKKFE 640 (1286)
Q Consensus 621 ELesL~sk~ssLe~eKRKLE 640 (1286)
++...+..+..|-.-+|+||
T Consensus 99 dlsqt~aikeql~kyiReLE 118 (333)
T KOG1853|consen 99 DLSQTHAIKEQLRKYIRELE 118 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777777777
No 174
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.57 E-value=8.2 Score=43.35 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy12517 354 AEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEK 429 (1286)
Q Consensus 354 LE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~ 429 (1286)
+...++++.+.++++..++.+|..+++++...+ ++=-+.+.+|..+.-+++-..+.|.-+..+++.+.++|+..+
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~-ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEY-EEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 344444444444444444444444444444444 111112233466666666666666666667777777766543
No 175
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=81.56 E-value=91 Score=34.44 Aligned_cols=92 Identities=15% Similarity=0.270 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 295 ELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK-KSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELR 373 (1286)
Q Consensus 295 ELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd-k~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~K 373 (1286)
.|-.++-.+.+++.++.++..+...+...-.--++-...|+ .-.++-.-+.....++-.+...+-..++..-.+++.++
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666665555544443333333332 22223222333334444444444444555555555555
Q ss_pred HHHHHHHHHHhhh
Q psy12517 374 YLEEEMDEMQDHF 386 (1286)
Q Consensus 374 ELReEmEELrDs~ 386 (1286)
....++.-..+.+
T Consensus 93 ~~~~el~k~~~~l 105 (194)
T PF15619_consen 93 DKDEELLKTKDEL 105 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444444
No 176
>KOG0946|consensus
Probab=80.97 E-value=2e+02 Score=38.05 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=71.8
Q ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 290 KTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMK 369 (1286)
Q Consensus 290 ~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELK 369 (1286)
+|-..++..+.-..+++....+.++.++....+-+..+...+..=................+..+...+-+....+.++.
T Consensus 733 ~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q 812 (970)
T KOG0946|consen 733 KTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQ 812 (970)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHH
Confidence 33334444444444444444444444444444444444444431110000111111111333333333555556677777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy12517 370 KELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLE 426 (1286)
Q Consensus 370 rE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE 426 (1286)
.++..+.+++..+.... ..+ -.+|+.+...|.+|..++..++.++-.+-
T Consensus 813 ~e~~~~keq~~t~~~~t-----sa~---a~~le~m~~~~~~la~e~~~ieq~ls~l~ 861 (970)
T KOG0946|consen 813 SELTQLKEQIQTLLERT-----SAA---ADSLESMGSTEKNLANELKLIEQKLSNLQ 861 (970)
T ss_pred HHHHHHHHHHHHHHHHH-----Hhh---hhhhHHhhccccchhhHHHHHHHHHHHHH
Confidence 77777777777777766 666 78889999999999999888887776653
No 177
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=80.34 E-value=66 Score=37.50 Aligned_cols=76 Identities=26% Similarity=0.330 Sum_probs=38.3
Q ss_pred hhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHH
Q psy12517 388 EDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAE 467 (1286)
Q Consensus 388 Ee~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~ 467 (1286)
|++-.++.-|.|+.+-+--.|--|+-...|+..-+-=-|.-+.-+|.++...- .+|..||++|+..+.---
T Consensus 56 e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~K---------kqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 56 EEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCK---------KQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 55556666777777777777766655544444433333333333333333222 244556666655443333
Q ss_pred HHHHH
Q psy12517 468 KLQKD 472 (1286)
Q Consensus 468 rLq~e 472 (1286)
|.|..
T Consensus 127 rsQ~~ 131 (307)
T PF10481_consen 127 RSQQA 131 (307)
T ss_pred HHHHh
Confidence 33433
No 178
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=79.76 E-value=1.5e+02 Score=35.73 Aligned_cols=107 Identities=23% Similarity=0.338 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHH-HH-HHHHHHHHHhHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVE-RI-QALEKELKLANETAEKLQKDLKE 475 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~-~I-~eLEreLk~akEvs~rLq~eLee 475 (1286)
.+.++++......|.....-++..++-+..-+.-. ..++.+-..-.|.+.|. .+ .+|=.++++...+...|++.++.
T Consensus 63 ~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~-~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~ 141 (384)
T PF03148_consen 63 ERELEELDEEIDLLEEEKRRLEKALEALRKPLSIA-QECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLLQRTLEQ 141 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443322221 11222111113443211 33 66666778889999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHH--HHHHHhc
Q psy12517 476 ATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEAT--DKLERAN 521 (1286)
Q Consensus 476 lEekle~e~~~~~~~l~~~~~~~a~~~kkKLE~dL~ElE--~kle~an 521 (1286)
+.+.+. .-...+.+|+.||.+=. ..+|..+
T Consensus 142 ~~eQl~----------------~lr~ar~~Le~Dl~dK~~A~~ID~~~ 173 (384)
T PF03148_consen 142 AEEQLR----------------LLRAARYRLEKDLSDKFEALEIDTQC 173 (384)
T ss_pred HHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998884 23367888999998833 2344444
No 179
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.34 E-value=2.8e+02 Score=38.73 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12517 292 TASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEA 331 (1286)
Q Consensus 292 ~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQ 331 (1286)
.-+.+..++..+..+..+++.+..++..+...+..++...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 313 (1353)
T TIGR02680 274 AQTQYDQLSRDLGRARDELETAREEERELDARTEALEREA 313 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555554433
No 180
>KOG0962|consensus
Probab=79.18 E-value=2.8e+02 Score=38.58 Aligned_cols=33 Identities=9% Similarity=-0.029 Sum_probs=25.1
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHhHHHHhhhhh
Q psy12517 1004 VAAVKMRYDKRATALSDELKAIQGQVLRFKRER 1036 (1286)
Q Consensus 1004 ~a~~~~ry~~~~~~~~~e~~~~~~~~~r~kr~r 1036 (1286)
+-.+.--|.+.++.....|..++.-..-|-.+-
T Consensus 932 ~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~ 964 (1294)
T KOG0962|consen 932 SEKLAQKKRNDINEKVSLLHQIYKLNECFEQYG 964 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 566666788888888888888888777665543
No 181
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=79.09 E-value=1.9e+02 Score=36.78 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy12517 317 KKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSS 396 (1286)
Q Consensus 317 kk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~e 396 (1286)
++.+...+..+..+.........+...++++..++..+...++.+..++..++.+++.+...++++...++. .+
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~----~G-- 257 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS----EG-- 257 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hc--
Confidence 333333344433333322223334455566666666667777777777777777777777777777776622 11
Q ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12517 397 LKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCG 441 (1286)
Q Consensus 397 L~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~ 441 (1286)
- .+.-+...++.++.+++.++...+.+..++.+
T Consensus 258 --G----------~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~ 290 (650)
T TIGR03185 258 --G----------DLFEEREQLERQLKEIEAARKANRAQLRELAA 290 (650)
T ss_pred --c----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 12223445555555555555555555555553
No 182
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=78.92 E-value=1.4e+02 Score=35.06 Aligned_cols=58 Identities=17% Similarity=0.352 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 773 KQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 773 ~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
..|..++..|-...++.+..++..+.-|-.+..+++.+. -..-.++.+...+++++..
T Consensus 212 ~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~----Kk~kklEKE~~~~k~k~e~ 269 (309)
T PF09728_consen 212 KELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMS----KKIKKLEKENQTWKSKWEK 269 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777777777777777777777776 6666677777777766655
No 183
>KOG0979|consensus
Probab=78.06 E-value=2.7e+02 Score=37.75 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=61.1
Q ss_pred CCCcHHHHHHHHHHHHHHHhh--cCCccccchhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhcCCcchhh-hhhH
Q psy12517 893 PPTTEESQNRIRRAAFAAKKS--VSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSL-TSFQ 969 (1286)
Q Consensus 893 ~Pd~eev~~rI~rLe~~m~~l--VNM~Ai~Eyd~V~~rl~el~s~r~~~Ls~Ere~IlErIeq~ek~kkd~~sfM-~sfe 969 (1286)
|.+.+++..-|-.=......+ ||-.+..+|+.+...+.++..+..+ ++.+.+.|.+.+..+.. .....| +--.
T Consensus 834 p~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y~~r~~el~~l~~~~~~-~~~~le~i~~kl~~~ke---~w~~~le~~V~ 909 (1072)
T KOG0979|consen 834 PTTMDELDQAITDELTRALKFENVNEDAVQQYEVREDELRELETKLEK-LSEDLERIKDKLSDVKE---VWLPKLEEMVE 909 (1072)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHhhHHH---HHHHHHHHHHH
Confidence 456777777776543333333 8888899999999999999999999 99999999887776431 111122 2235
Q ss_pred hHHH----HHHhhcC-CCcccch
Q psy12517 970 SIDD----AYENVKY-TNYGRRE 987 (1286)
Q Consensus 970 aInk----If~~LS~-G~~geLe 987 (1286)
.||+ .|+.+-. | ...|+
T Consensus 910 ~In~~Fs~~F~~mg~aG-eV~L~ 931 (1072)
T KOG0979|consen 910 QINERFSQLFSSMGCAG-EVSLE 931 (1072)
T ss_pred HHHHHHHHHHhhcccCc-eEEec
Confidence 6777 4555544 4 55666
No 184
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=77.85 E-value=1.2e+02 Score=33.76 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 337 SNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 337 ~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
..-++.++.++++-+..++.....+..+...+++++..|-.+|+.+++.-
T Consensus 62 aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 62 AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666666666666666666555
No 185
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=76.98 E-value=1.6e+02 Score=36.67 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHH
Q psy12517 681 QLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKS 738 (1286)
Q Consensus 681 qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEee 738 (1286)
+|.-.-++-+...|.|.+-..-||.+|++||.++....-.+ ..|.+|+..|-+|=++
T Consensus 321 kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfv-DiinkLk~niEeLIed 377 (527)
T PF15066_consen 321 KLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFV-DIINKLKENIEELIED 377 (527)
T ss_pred HHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHh
Confidence 44444556677799999999999999999999976654443 4577777777776554
No 186
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=76.84 E-value=1.7e+02 Score=34.92 Aligned_cols=25 Identities=4% Similarity=0.108 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh
Q psy12517 251 QIDLLRHELDNMKAKCEKLEREKSD 275 (1286)
Q Consensus 251 ~i~~lr~el~~~k~rce~~e~eks~ 275 (1286)
-+.-|..++..++.+.+.+|..=.+
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666655433
No 187
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=76.67 E-value=72 Score=34.31 Aligned_cols=58 Identities=14% Similarity=0.285 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 375 LEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 375 LReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
++.++.-++.-+ |.+ .|+|.-+-++|+.=+.+...+.-++.+.-.++.++=.++..|.
T Consensus 82 ~RkEv~~vRkkI-----D~v---NreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv 139 (159)
T PF04949_consen 82 MRKEVEMVRKKI-----DSV---NRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELV 139 (159)
T ss_pred hHHHHHHHHHHH-----HHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666 666 8999999999999999999999999999999888866666554
No 188
>KOG1899|consensus
Probab=76.58 E-value=1e+02 Score=39.43 Aligned_cols=147 Identities=21% Similarity=0.261 Sum_probs=89.8
Q ss_pred hhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy12517 274 SDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAA 353 (1286)
Q Consensus 274 s~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLls 353 (1286)
++|+---+.+|.|. +.-++..+|.++.+|+.-.+.+...+.++..++.+-.+| |..++.-+++-|.+|.+
T Consensus 88 ~eWles~~p~~~~~----s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEK------IrDLE~cie~kr~kLna 157 (861)
T KOG1899|consen 88 AEWLESPSPSMSTV----SCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEK------IRDLETCIEEKRNKLNA 157 (861)
T ss_pred HHHHhccCCCCCCc----cCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhh------HHHHHHHHHHHHhhhch
Confidence 45665555555553 345677888998888877777777777777776665554 44556666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHH
Q psy12517 354 AEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSE-RRSEQLEAEKLEA 432 (1286)
Q Consensus 354 LE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKae-rk~EElE~E~~~~ 432 (1286)
.+..++.-.-..-.|+.+.=.|-.|+.+|+-.+ -.+ -|+--+.+|-.|--+..+.++. -+..++++++...
T Consensus 158 tEEmLQqellsrtsLETqKlDLmaevSeLKLkl-----tal---Ekeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqy 229 (861)
T KOG1899|consen 158 TEEMLQQELLSRTSLETQKLDLMAEVSELKLKL-----TAL---EKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQY 229 (861)
T ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHH-----HHH---HHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766655555666666666667766666655 222 4444445555554444444442 2345666666666
Q ss_pred HHHHHh
Q psy12517 433 EKKCRE 438 (1286)
Q Consensus 433 E~k~lr 438 (1286)
|.+..-
T Consensus 230 e~klks 235 (861)
T KOG1899|consen 230 ETKLKS 235 (861)
T ss_pred Hhhccc
Confidence 555443
No 189
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=76.53 E-value=1.4e+02 Score=33.62 Aligned_cols=94 Identities=22% Similarity=0.317 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 293 ASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK-KSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKE 371 (1286)
Q Consensus 293 ~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd-k~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE 371 (1286)
+-+|+-|...+.+.+.++.....++-.++..++.+..+....+ .+..+..+...-.-++...++.+.....+.+-+...
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence 3467778888888888888888888888887777666555222 222222111111123333344444444444444444
Q ss_pred HHHHHHHHHHHHhhh
Q psy12517 372 LRYLEEEMDEMQDHF 386 (1286)
Q Consensus 372 ~KELReEmEELrDs~ 386 (1286)
+..+..++..|++.+
T Consensus 89 l~~le~El~~Lr~~l 103 (202)
T PF06818_consen 89 LGQLEAELAELREEL 103 (202)
T ss_pred hhhhHHHHHHHHHHH
Confidence 444444444444444
No 190
>KOG0804|consensus
Probab=75.89 E-value=46 Score=40.91 Aligned_cols=66 Identities=24% Similarity=0.255 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQ 743 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~Eq 743 (1286)
-+++++.||..+++-.+.+-.-....-.++++++.++.++-.+.-.+|++|+..|+.|=--|++.+
T Consensus 390 k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 390 KLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhh
Confidence 445566666666655544433333334445555555444433333334444433333333344333
No 191
>KOG0979|consensus
Probab=75.51 E-value=3.1e+02 Score=37.20 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy12517 738 SLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILE 811 (1286)
Q Consensus 738 eLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae 811 (1286)
++.+....+..+-+.+|++++.++.+....++ |...++..--++..+-.+++.+.++.+...-++.+.+
T Consensus 249 ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~ee-----Le~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~ 317 (1072)
T KOG0979|consen 249 EYNAYKQAKDRAKKELRKLEKEIKPIEDKKEE-----LESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIE 317 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-----HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666666666655544443 1112233333344455555556666666666666655
No 192
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=75.25 E-value=2.3e+02 Score=35.59 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=4.6
Q ss_pred HHHHhhHHHhh
Q psy12517 709 SLEENLKSKET 719 (1286)
Q Consensus 709 ELq~RL~E~Es 719 (1286)
+++.||.....
T Consensus 305 ele~RL~~l~~ 315 (563)
T TIGR00634 305 EIEERLAQIKR 315 (563)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 193
>KOG0249|consensus
Probab=75.07 E-value=22 Score=45.51 Aligned_cols=85 Identities=22% Similarity=0.268 Sum_probs=60.9
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHH-------HHhHHHHH
Q psy12517 395 SSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKEL-------KLANETAE 467 (1286)
Q Consensus 395 ~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreL-------k~akEvs~ 467 (1286)
.+++++++-+.-+.=.|+...+.+.++.+-.|--.-..|..++-+++..+.+.+ ....||..| ...+|+-.
T Consensus 38 ~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d--~ndklE~~Lankda~lrq~eekn~ 115 (916)
T KOG0249|consen 38 PEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHD--LNDKLENELANKDADLRQNEEKNR 115 (916)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCccc--chHHHHHHHhCcchhhchhHHhhh
Confidence 334778888887888888888888888887777777788888887766544433 224444444 66678888
Q ss_pred HHHHHHHHHHHHHH
Q psy12517 468 KLQKDLKEATDKLE 481 (1286)
Q Consensus 468 rLq~eLeelEekle 481 (1286)
.|+..|+-+|.++-
T Consensus 116 slqerLelaE~~l~ 129 (916)
T KOG0249|consen 116 SLQERLELAEPKLQ 129 (916)
T ss_pred hhhHHHHHhhHhhH
Confidence 88888888887774
No 194
>KOG0982|consensus
Probab=74.68 E-value=2.2e+02 Score=35.21 Aligned_cols=129 Identities=22% Similarity=0.203 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy12517 365 NEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGME 444 (1286)
Q Consensus 365 LEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~ 444 (1286)
+.....-.+.+..|.-.|+++.-++++-++ +-.+-.+--+|=.|.-.+.++...++-+-..+-. +.+...
T Consensus 287 il~k~eReasle~Enlqmr~qqleeentel---Rs~~arlksl~dklaee~qr~sd~LE~lrlql~~-eq~l~~------ 356 (502)
T KOG0982|consen 287 ILIKKEREASLEKENLQMRDQQLEEENTEL---RSLIARLKSLADKLAEEDQRSSDLLEALRLQLIC-EQKLRV------ 356 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHHH------
Confidence 333444455666777777777777776666 4445555555655555554444333332211111 111111
Q ss_pred cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHH
Q psy12517 445 GVNKVERIQALEKELKLANETAEKLQKDLKEA-TDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEAT 514 (1286)
Q Consensus 445 gv~~~~~I~eLEreLk~akEvs~rLq~eLeel-Eekle~e~~~~~~~l~~~~~~~a~~~kkKLE~dL~ElE 514 (1286)
-++..++.++++-+.-.|+---|-++|+-+ ..++..+++++. ........|++.++.|+
T Consensus 357 --rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rg---------rsSaRe~eleqevkrLr 416 (502)
T KOG0982|consen 357 --RMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRG---------RSSAREIELEQEVKRLR 416 (502)
T ss_pred --HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC---------chhHHHHHHHHHHHHhc
Confidence 122456667776644444444444444444 234555555554 22356667777777766
No 195
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.79 E-value=1.8e+02 Score=33.82 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 723 KTISDLQTKCSTLEKSLTAEQKQK 746 (1286)
Q Consensus 723 k~I~kLEaRI~eLEeeLe~EqRek 746 (1286)
..|..|.++...+..+..++.+++
T Consensus 197 ~l~~~~aa~~a~~~~e~a~l~~qk 220 (265)
T COG3883 197 ALIAALAAKEASALGEKAALEEQK 220 (265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445555566666665555555333
No 196
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=73.39 E-value=61 Score=32.22 Aligned_cols=86 Identities=23% Similarity=0.260 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh------------------hhhHHHHHHHHHHHHHHHH
Q psy12517 679 LNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM------------------TKTISDLQTKCSTLEKSLT 740 (1286)
Q Consensus 679 ~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a------------------Kk~I~kLEaRI~eLEeeLe 740 (1286)
+..+...+..-+...+.+...+..|+.+..+.+.-+++++..- ...+..|+.++..++..+.
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~ 84 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777788888888888888888887541 2456777888888887777
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhh
Q psy12517 741 AEQKQKALKEKELKTKESEINVLK 764 (1286)
Q Consensus 741 ~EqRek~ea~K~~RK~ERrIKEL~ 764 (1286)
.-.+......+.+..++..|.++.
T Consensus 85 ~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 85 TLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777766653
No 197
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=72.89 E-value=36 Score=33.38 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHH
Q psy12517 723 KTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITELKTQYEQEIKKLEDT 792 (1286)
Q Consensus 723 k~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlEEaEEe 792 (1286)
..+..||.++.-|+.+....-++.-++.+.+..+.-+++-|..|..- ....+|++.-+.+.++|.++|-+
T Consensus 24 ~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 24 KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55788899999999999999999999999999999999999999987 45888888778888888888754
No 198
>KOG4593|consensus
Probab=72.77 E-value=3e+02 Score=35.88 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=24.2
Q ss_pred cCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy12517 288 TSKTTASELLKLQQRVNELKTENEDLNDEKKSLS 321 (1286)
Q Consensus 288 ~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~ 321 (1286)
.|-|..|.+..++..++.|+......+..+..+.
T Consensus 56 ~n~~~~s~~~~~~~~l~~Lqns~kr~el~~~k~~ 89 (716)
T KOG4593|consen 56 ENITSKSLLMQLEDELMQLQNSHKRAELELTKAQ 89 (716)
T ss_pred ccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5677788888888888888877666665555443
No 199
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.71 E-value=1.1e+02 Score=35.72 Aligned_cols=100 Identities=22% Similarity=0.288 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy12517 310 NEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFRED 389 (1286)
Q Consensus 310 IEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe 389 (1286)
|+.+..++.=|++.+..+-...+.++....+....+....++......++...+++...+.++++++..+.+++..+
T Consensus 161 Lesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl--- 237 (269)
T PF05278_consen 161 LESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRL--- 237 (269)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44455677778888777776666666555555566666677888888888888888888888888888888888777
Q ss_pred hhhHHHHHhHHHHHHHHHhhHHHHHHHH
Q psy12517 390 QADEYSSLKKELEQTAKNCRILSFKLRK 417 (1286)
Q Consensus 390 ~~de~~eL~KeLheleKncRiLq~kLrK 417 (1286)
.++ .-+--.+.|+.--+..++++
T Consensus 238 --~~l---~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 238 --GEL---EMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred --HHH---HHHHHHHHHHHHHHHHHHHH
Confidence 444 33344455554445555544
No 200
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=72.64 E-value=2.4e+02 Score=34.62 Aligned_cols=138 Identities=17% Similarity=0.236 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12517 252 IDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEA 331 (1286)
Q Consensus 252 i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQ 331 (1286)
++.++.+|+.++...+-++.+|-.+-.-|-+ .-|++.+.-....-.+++...+...+-...+.+..+.+
T Consensus 76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~---------~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~-- 144 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQGEKRAAETEREA---------ARSELQKARQEREAVRQELAAARQNLAKAQQELARLTK-- 144 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3344444444444444444466555443332 12344444444334444444444333333333333333
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHH
Q psy12517 332 AAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRIL 411 (1286)
Q Consensus 332 Kkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiL 411 (1286)
.-..++++|..+-.....+..+...+-.+-++|+.-...+.... .+|...-.+++..-+.|
T Consensus 145 -----------Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~--------~~L~~r~~~ieQ~~~~l 205 (499)
T COG4372 145 -----------QAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQV--------LDLKLRSAQIEQEAQNL 205 (499)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666665444444333 23344444444444444
Q ss_pred HHHHHHHH
Q psy12517 412 SFKLRKSE 419 (1286)
Q Consensus 412 q~kLrKae 419 (1286)
..+-.-++
T Consensus 206 a~r~~a~q 213 (499)
T COG4372 206 ATRANAAQ 213 (499)
T ss_pred HHHHHHHH
Confidence 44443333
No 201
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=72.51 E-value=1.7e+02 Score=32.71 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=36.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 303 VNELKTENEDLNDEKKSLSLRVRELETEAA--AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMD 380 (1286)
Q Consensus 303 lnELQqEIEDLe~Dkk~L~qrLreLEKKQK--kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmE 380 (1286)
+..+...|.++..+...+..++..+-.... .......+...+..++.++..+...++.+...++..+..+..++..+.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555554444332000 011112222333444444444444444455555555555555555555
Q ss_pred HHHhhh
Q psy12517 381 EMQDHF 386 (1286)
Q Consensus 381 ELrDs~ 386 (1286)
..+..+
T Consensus 102 ~~~~~l 107 (302)
T PF10186_consen 102 QRRSRL 107 (302)
T ss_pred HHHHHH
Confidence 444444
No 202
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=71.48 E-value=2.7e+02 Score=34.81 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 297 LKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAA 332 (1286)
Q Consensus 297 ekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQK 332 (1286)
.+|..+=...+..|.|++-..-.|..++.+|+-+..
T Consensus 320 ~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~ 355 (527)
T PF15066_consen 320 QKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKIT 355 (527)
T ss_pred HHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhh
Confidence 334444444555566666666666666666655443
No 203
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=71.39 E-value=1.6e+02 Score=32.15 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEA 427 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~ 427 (1286)
...++++......|+.++.+++.+...+-+
T Consensus 111 ~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 111 EAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555543
No 204
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.78 E-value=58 Score=36.22 Aligned_cols=28 Identities=7% Similarity=0.085 Sum_probs=12.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 404 TAKNCRILSFKLRKSERRSEQLEAEKLE 431 (1286)
Q Consensus 404 leKncRiLq~kLrKaerk~EElE~E~~~ 431 (1286)
+......|..++..++.+++.++++...
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 205
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=70.49 E-value=2.3e+02 Score=33.52 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=20.9
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 396 SLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 396 eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
.++-.|-......-+...++...+.++.++.+.......++.++.
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455555554444444444444
No 206
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.32 E-value=46 Score=37.79 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=12.4
Q ss_pred cCcHHHHHHHHHHHHHHHHHhHHH
Q psy12517 290 KTTASELLKLQQRVNELKTENEDL 313 (1286)
Q Consensus 290 ~t~~sELekLQKklnELQqEIEDL 313 (1286)
++----..+.+..+....+.|+.+
T Consensus 69 ~~GReLA~kf~eeLrg~VGhiERm 92 (290)
T COG4026 69 RVGRELAEKFFEELRGMVGHIERM 92 (290)
T ss_pred chhHHHHHHHHHHHHHhhhhhhee
Confidence 333334455566666666655543
No 207
>PRK09343 prefoldin subunit beta; Provisional
Probab=70.22 E-value=84 Score=32.08 Aligned_cols=90 Identities=20% Similarity=0.261 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh------------------hhhHHHHHHHHHHHHHHH
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM------------------TKTISDLQTKCSTLEKSL 739 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a------------------Kk~I~kLEaRI~eLEeeL 739 (1286)
++..+..++..-+...+.+...+..|+.+..+++.-+.|++..- -..+..|+.|+..++..+
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~i 87 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRS 87 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777788888888899999999999988888531 144677788888888777
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhhc
Q psy12517 740 TAEQKQKALKEKELKTKESEINVLKNQS 767 (1286)
Q Consensus 740 e~EqRek~ea~K~~RK~ERrIKEL~~Q~ 767 (1286)
..-.+......+.+..++..|.++..+.
T Consensus 88 k~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 88 RTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777777777777777765543
No 208
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=70.17 E-value=1.6e+02 Score=37.07 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy12517 250 DQIDLLRHELDNMKAKCEKLEREKSDILL 278 (1286)
Q Consensus 250 ~~i~~lr~el~~~k~rce~~e~eks~ill 278 (1286)
+-.+.|-.++.+-..|.+++|.||..|+|
T Consensus 302 es~e~L~qqV~qs~EKIa~LEqEKEHw~L 330 (518)
T PF10212_consen 302 ESREGLAQQVQQSQEKIAKLEQEKEHWML 330 (518)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888899999999999984
No 209
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=70.13 E-value=2.3e+02 Score=33.32 Aligned_cols=59 Identities=7% Similarity=0.175 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 772 TKQITELKTQYEQEIKKLEDT--------LVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 772 ~~rlqEl~KqyKRQlEEaEEe--------a~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
...++..+..+++|+...... ++.....|..|+++.+-++ ..-..+-......+.....
T Consensus 244 v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~----~~y~~~l~r~~~a~~~~~~ 310 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQ----QQLKAALTSLQQTRVEADR 310 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 444445555566666554433 4566778999999999888 6666666666666654444
No 210
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=69.66 E-value=1.9e+02 Score=32.24 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 344 AEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMD 380 (1286)
Q Consensus 344 ieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmE 380 (1286)
...++..+......++.....+++++..+...+..+.
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444
No 211
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.45 E-value=51 Score=34.81 Aligned_cols=40 Identities=33% Similarity=0.492 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12517 291 TTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETE 330 (1286)
Q Consensus 291 t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKK 330 (1286)
.+..++..+...+..|+.++..+..+...+...++.|...
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3466777888777777777777777777777777777663
No 212
>KOG1937|consensus
Probab=68.65 E-value=3.1e+02 Score=34.29 Aligned_cols=183 Identities=18% Similarity=0.239 Sum_probs=113.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHH-HHhhhc--cccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDIL-LRRLAS--METTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSL 322 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~e~eks~il-lrrl~~--~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~q 322 (1286)
.+++.+....-..+..++.+|-.++...|++= +-+++. ++ .-....+.+++|+..+..+...+.++..-.+- -
T Consensus 244 eel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e--~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed--~ 319 (521)
T KOG1937|consen 244 EELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIE--ALDDGEAYLAKLMGKLAELNKQMEELTQQWED--T 319 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHH--hcCChHhHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 46777777777888889999988888777764 222221 11 11334567777777777666666655544332 2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHH
Q psy12517 323 RVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELE 402 (1286)
Q Consensus 323 rLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLh 402 (1286)
+.-.++++....+.+.-.+-.-.++ .++..++..++.+.++++.-+.....|+.+++.+-+.+ +...| -+-++
T Consensus 320 R~pll~kkl~Lr~~l~~~e~e~~e~-~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv---~rk~y---tqrik 392 (521)
T KOG1937|consen 320 RQPLLQKKLQLREELKNLETEDEEI-RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDV---QRKVY---TQRIK 392 (521)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchh---HHHHH---HHHHH
Confidence 3344444444333221111111111 33455566666667777777778888888877766544 23444 77899
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 403 QTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREV 439 (1286)
Q Consensus 403 eleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrl 439 (1286)
++.+|.|-+....-|+.--.-+|.-+....-.++.|.
T Consensus 393 Ei~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rs 429 (521)
T KOG1937|consen 393 EIDGNIRKQEQDIVKILEETRELQKQENSESEALNRS 429 (521)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998777777766666655555553
No 213
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.15 E-value=74 Score=35.42 Aligned_cols=27 Identities=11% Similarity=0.315 Sum_probs=15.2
Q ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12517 290 KTTASELLKLQQRVNELKTENEDLNDE 316 (1286)
Q Consensus 290 ~t~~sELekLQKklnELQqEIEDLe~D 316 (1286)
.+....+..+++.+..++.++..+..+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555566666666666555555444
No 214
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=67.83 E-value=1.4e+02 Score=30.64 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12517 295 ELLKLQQRVNELKTENEDLNDEKKSLSLRVRELET 329 (1286)
Q Consensus 295 ELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEK 329 (1286)
.+..+...++.|+++++.+...+..+...+..+..
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~ 41 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELDT 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554444444443
No 215
>PF14992 TMCO5: TMCO5 family
Probab=67.81 E-value=1.4e+02 Score=34.97 Aligned_cols=104 Identities=16% Similarity=0.277 Sum_probs=53.3
Q ss_pred HHHhHHHHHhHHHhHHHHHHhhHHHhhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhh
Q psy12517 693 AQRNAEKVTKLERDKTSLEENLKSKETQM-------TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKN 765 (1286)
Q Consensus 693 ~QklE~~rk~LE~qvKELq~RL~E~Es~a-------Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~ 765 (1286)
..+||.....+-+-|-||+.++++-+... +..++-++.++..+... .....+.+.+.+.....+..
T Consensus 72 ~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~-------~~~qE~ei~kve~d~~~v~~ 144 (280)
T PF14992_consen 72 TAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLES-------CASQEKEIAKVEDDYQQVHQ 144 (280)
T ss_pred hHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777888899988877665 23344444444444433 33333333333333333221
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 766 QSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNR 806 (1286)
Q Consensus 766 Q~eekn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrE 806 (1286)
-. +..+.-+..+++.+ +++++ +-++.-..++.++.|..
T Consensus 145 l~-eDq~~~i~klkE~L-~rmE~-ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 145 LC-EDQANEIKKLKEKL-RRMEE-EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HH-HHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHhch
Confidence 11 12222333333444 55666 55555555555555554
No 216
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.49 E-value=29 Score=36.58 Aligned_cols=66 Identities=29% Similarity=0.399 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Q psy12517 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSER 420 (1286)
Q Consensus 349 TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaer 420 (1286)
.++..+...+.++.+++..++.+++.+..++..+....-.+ +|...+.++.+.|..|+.+|..++.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~------el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE------ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677788889999999999999999999999988222 3466677777777777777776664
No 217
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=66.76 E-value=2.1e+02 Score=31.70 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHH
Q psy12517 774 QITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHG 830 (1286)
Q Consensus 774 rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrs 830 (1286)
.++..+..|+.|++.+...+......++.|+++++++. -..+.|-.-++..++
T Consensus 96 ~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k----~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 96 KAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR----ARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34555677888888888888888888888888888887 555544444444444
No 218
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.76 E-value=4.9e+02 Score=35.93 Aligned_cols=84 Identities=8% Similarity=0.110 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc-ccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12517 247 EYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMET-TTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVR 325 (1286)
Q Consensus 247 ~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t-~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLr 325 (1286)
..-++++..+...+.++...+.+.++...+- ++++.... .......--+..+++.+......+.+++.+....+.+++
T Consensus 55 ~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~-~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~ 133 (1109)
T PRK10929 55 NWLEERKGSLERAKQYQQVIDNFPKLSAELR-QQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAR 133 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4455666666666666666666666655443 22322111 000001111367777777777777777777777777776
Q ss_pred HHHHHH
Q psy12517 326 ELETEA 331 (1286)
Q Consensus 326 eLEKKQ 331 (1286)
.+-...
T Consensus 134 ~~~~~l 139 (1109)
T PRK10929 134 EISDSL 139 (1109)
T ss_pred HHHHHH
Confidence 655544
No 219
>KOG0804|consensus
Probab=66.61 E-value=1.6e+02 Score=36.55 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 351 LAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 351 LlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
+..+...+..+..++...+.+++.|.....-++..+
T Consensus 384 ~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333344444445555555555565665555555555
No 220
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=66.39 E-value=86 Score=35.17 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 780 TQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 780 KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
++....++....+.....+.|+.|..+++-++ ..++++++.+..++.++.+
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~----~~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLE----VYNEQLERQVASQEQELAS 88 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 55556677777788888888888888888888 7788888888888777665
No 221
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=66.36 E-value=1e+02 Score=32.01 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM 721 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a 721 (1286)
++..+-.++.+.+.+.+.+.-.++++|.++++.+.=|.|++...
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~ 50 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLD 50 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45667788888999999999999999999999999999999553
No 222
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=66.35 E-value=1.1e+02 Score=30.23 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhh------------h------hhhHHHHHHHHHHHHHHHHHHH
Q psy12517 682 LREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQ------------M------TKTISDLQTKCSTLEKSLTAEQ 743 (1286)
Q Consensus 682 L~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~------------a------Kk~I~kLEaRI~eLEeeLe~Eq 743 (1286)
+...+..-+...+.+-..+..|+.+..+...=+.+++.. + ...+..|+.++..++..+..-.
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~ 83 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLE 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666777777776666666633 1 3556667777777777777666
Q ss_pred HHHHHHHHHHHhhhhHHHHh
Q psy12517 744 KQKALKEKELKTKESEINVL 763 (1286)
Q Consensus 744 Rek~ea~K~~RK~ERrIKEL 763 (1286)
.......+.+..+..+|.++
T Consensus 84 ~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 84 RQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655
No 223
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=65.99 E-value=1.5e+02 Score=36.57 Aligned_cols=115 Identities=15% Similarity=0.226 Sum_probs=42.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q psy12517 307 KTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEE---------LMDENEEMKKELRYLEE 377 (1286)
Q Consensus 307 QqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEE---------L~EeLEELKrE~KELRe 377 (1286)
..++.++..++..+++--.......+ ..+..+++++..+....-. +......|....+.|-.
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~---------~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~ 220 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVK---------ESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLT 220 (424)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 66777888888887776666655433 2333333333322221111 11223344445555666
Q ss_pred HHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 378 EMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 378 EmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
.+++|+|.+ .++ ++.| +.+-||..--+|.-+...+..+..++..++..+-.+.
T Consensus 221 kVdDLQD~V-----E~L---RkDV--~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~k 273 (424)
T PF03915_consen 221 KVDDLQDLV-----EDL---RKDV--VQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEK 273 (424)
T ss_dssp HHHHHHHHH-----HHH---HHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHH---HHHH--HHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 666666666 444 5554 6788888888888888888888888888877776654
No 224
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=65.75 E-value=1.9e+02 Score=30.82 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=50.9
Q ss_pred HHHhhhhHHHHhhhhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHH
Q psy12517 752 ELKTKESEINVLKNQSSD---NVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENN 828 (1286)
Q Consensus 752 ~~RK~ERrIKEL~~Q~ee---kn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kL 828 (1286)
.+.+++..++...--.++ -++.+++--..+|..+|+|=..++.+....+-..-+-|-..- +-...+..+...+
T Consensus 21 ~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k----eKl~~~~~~~~~l 96 (177)
T PF13870_consen 21 QLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK----EKLHFLSEELERL 96 (177)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 333444444433333333 457788777799999999999888888888777776666655 5555555566666
Q ss_pred HHhhhh
Q psy12517 829 HGRLQQ 834 (1286)
Q Consensus 829 rsklr~ 834 (1286)
+..+..
T Consensus 97 ~~~l~~ 102 (177)
T PF13870_consen 97 KQELKD 102 (177)
T ss_pred HHHHHH
Confidence 655544
No 225
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=65.54 E-value=84 Score=38.80 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12517 292 TASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEA 331 (1286)
Q Consensus 292 ~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQ 331 (1286)
....+..+++.+..++.++..+...+..+..++.+|+.-.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4558999999999999999999999999999999998865
No 226
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=64.96 E-value=1.1e+02 Score=33.65 Aligned_cols=86 Identities=17% Similarity=0.243 Sum_probs=44.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh---------h-hHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q psy12517 301 QRVNELKTENEDLNDEKKSLSLRVRELETEAAAF---------K-KSNAAEREAEALRTKLAAAEGLCEE-------LMD 363 (1286)
Q Consensus 301 KklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkf---------d-k~eEld~sieELRTKLlsLE~alEE-------L~E 363 (1286)
..-.+.-+-+..++..+..+..++..|+...... . .-.+....+.++-.+|.....-|++ +.+
T Consensus 9 e~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLRe 88 (182)
T PF15035_consen 9 EEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLRE 88 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333344444455555666666666666655211 0 0011112223333344444444444 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 364 ENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 364 eLEELKrE~KELReEmEELrDs~ 386 (1286)
+++.....|+.|..++.-+...+
T Consensus 89 QLEq~~~~N~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 89 QLEQARKANEALQEDLQKLTQDW 111 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777666
No 227
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.54 E-value=63 Score=30.92 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 334 FKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 334 fdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
.+.+.-+.-.++++..+-..+.+...++....+.+++++.+++.+...+++.+
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444556667666777777788888889999999999999999888877
No 228
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=64.09 E-value=1.9e+02 Score=30.27 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=30.3
Q ss_pred HHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhhcccccc
Q psy12517 800 YEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWI 841 (1286)
Q Consensus 800 yRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~~kg~~i 841 (1286)
...++.+++++- +.-..++.-+.+.+.+|+. .|..|
T Consensus 79 ~~~~q~EldDLL----~ll~Dle~K~~kyk~rLk~--LG~eV 114 (136)
T PF04871_consen 79 RKEAQSELDDLL----VLLGDLEEKRKKYKERLKE--LGEEV 114 (136)
T ss_pred HHhhhhhHHHHH----HHHHhHHHHHHHHHHHHHH--cCCCc
Confidence 356899999998 8889999999999999988 55554
No 229
>KOG0239|consensus
Probab=63.54 E-value=3.6e+02 Score=35.14 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Q psy12517 341 EREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSER 420 (1286)
Q Consensus 341 d~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaer 420 (1286)
...+..+.+++......++++...+.. ++.+...+.+.+ ..+..+++.+-.+..+|.....++.-++.
T Consensus 181 ~~~~~~~~~~l~~v~~~~~~~~~~l~~-------~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~~~~~~~~i~~l~~ 248 (670)
T KOG0239|consen 181 ESDLGDLVTELEHVTNSISELESVLKS-------AQEERRVLADSL-----GNYADLRRNIKPLEGLESTIKKKIQALQQ 248 (670)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHh-----hhhhhHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 333444445555555555555555555 333333333333 24444566666666666666666555555
Q ss_pred HHHHHHHHHHHHH
Q psy12517 421 RSEQLEAEKLEAE 433 (1286)
Q Consensus 421 k~EElE~E~~~~E 433 (1286)
++..+..++.++.
T Consensus 249 ~l~~l~~~~~~l~ 261 (670)
T KOG0239|consen 249 ELEELKAELKELN 261 (670)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 230
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=62.85 E-value=3.7e+02 Score=33.13 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHhHHHHH
Q psy12517 682 LREELTQLKKEAQRNAEKVTKLERDKTSLE 711 (1286)
Q Consensus 682 L~eEL~~Eqe~~QklE~~rk~LE~qvKELq 711 (1286)
|+.+|...-.+.++++....+|-.+-|.|+
T Consensus 149 lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 149 LQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444
No 231
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=62.76 E-value=2.2e+02 Score=36.96 Aligned_cols=29 Identities=10% Similarity=0.152 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 451 RIQALEKELKLANETAEKLQKDLKEATDK 479 (1286)
Q Consensus 451 ~I~eLEreLk~akEvs~rLq~eLeelEek 479 (1286)
.+.+|+|+.++.+++=..|....+++.-.
T Consensus 371 ~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 371 EVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999988888777766666655433
No 232
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=62.69 E-value=3.9e+02 Score=33.38 Aligned_cols=36 Identities=14% Similarity=0.355 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 351 LAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 351 LlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
+..+....+-+.+++..++.++.+++.++.++...+
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~ 311 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL 311 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666666666
No 233
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=62.08 E-value=3.1e+02 Score=31.96 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 357 LCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 357 alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
.++++......|...|..|..+|.++-++-
T Consensus 7 sl~el~~h~~~L~~~N~~L~~~IqdtE~st 36 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLNKELIKEIQDTEDST 36 (258)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHhhH
Confidence 445555555555556666666666655554
No 234
>KOG2991|consensus
Probab=61.60 E-value=3.2e+02 Score=32.00 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHhhhhhHHHHHHH-----HHhhh-hhhhhHHHHHh
Q psy12517 564 SMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGE-----LESLK-SKLSALEAEKK 637 (1286)
Q Consensus 564 s~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs~ae~E~~EL~eE-----LesL~-sk~ssLe~eKR 637 (1286)
-.+.+.-|+.|+..|.++- ..|-.+++.-+.|-..+...+..|.++-..-..+|+.- |+.+. .-...|+..+.
T Consensus 113 Lk~se~~lkqQ~~~a~RrE-~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~ 191 (330)
T KOG2991|consen 113 LKESEEKLKQQQQEAARRE-NILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKD 191 (330)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777665 44444444433343445555555554433344444421 11111 12223344444
Q ss_pred hhchHHHHHhHHHHhhhhhhhh-hhhh
Q psy12517 638 KFETDILEKSSKITQLEASIRE-ERER 663 (1286)
Q Consensus 638 KLE~dqLE~eLeE~q~E~e~~~-~~ER 663 (1286)
| +++.|+|+++-. ||+-
T Consensus 192 K---------lee~QnelsAwkFTPdS 209 (330)
T KOG2991|consen 192 K---------LEEAQNELSAWKFTPDS 209 (330)
T ss_pred H---------HHHHHhhhheeeecCCC
Confidence 4 458888888864 5553
No 235
>KOG4460|consensus
Probab=61.35 E-value=2.7e+02 Score=35.56 Aligned_cols=107 Identities=14% Similarity=0.131 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCccccc
Q psy12517 771 VTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKR 850 (1286)
Q Consensus 771 n~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~~kg~~i~~~~~~~~~ 850 (1286)
|+.++++++++.=..+-+++++.........+|...+|++. +..+.+++.+++|+..... ++.
T Consensus 589 H~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~----e~qe~L~~~~~~L~~~~~~-------~lp------ 651 (741)
T KOG4460|consen 589 HVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAK----EKQEDLMNRMKKLLHSFHS-------ELP------ 651 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHhcccc-------cCC------
Confidence 55666666655445566777766655555555555666665 9999999999999876555 331
Q ss_pred ccccCCchhhhhchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHhh
Q psy12517 851 KITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRASQLPPTPPTTEESQNRIRRAAFAAKKS 913 (1286)
Q Consensus 851 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~Pd~eev~~rI~rLe~~m~~l 913 (1286)
|++-.+- .-+.+++++-..+..++.. ++++..+...-..-|.+.
T Consensus 652 -----~l~~AEr-dFk~Elq~~~~~~~~L~~~-------------iET~~~~~~KQ~~H~~~v 695 (741)
T KOG4460|consen 652 -----VLSDAER-DFKKELQLIPDQLRHLGNA-------------IETVTMKKDKQQQHMEKV 695 (741)
T ss_pred -----cchhHHH-HHHHHHHHhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 1111222 2233457776666666654 567777766644445444
No 236
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.58 E-value=1.6e+02 Score=32.24 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12517 293 ASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELET 329 (1286)
Q Consensus 293 ~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEK 329 (1286)
+-....++..+..|+.+++.+...+..+...+..+..
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778888888888888888888888877777743
No 237
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=59.92 E-value=42 Score=33.91 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=45.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12517 331 AAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQD 384 (1286)
Q Consensus 331 QKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrD 384 (1286)
...|+.+..++..+..+-.++..++..+.++.+++..|+.||..|+..+..+..
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346777777888888888888999999999999999999999999998888765
No 238
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=59.82 E-value=2.2e+02 Score=34.36 Aligned_cols=59 Identities=15% Similarity=0.035 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHhh--cCCccccchhhhHHHHhhhhhhh
Q psy12517 874 QRLTEVAAELKRASQLPPTPPTTEESQNRIRRAAFAAKKS--VSTESDHTGESSSRALHRKGSLY 936 (1286)
Q Consensus 874 ~~l~~~~~~~~~~~~~~~~~Pd~eev~~rI~rLe~~m~~l--VNM~Ai~Eyd~V~~rl~el~s~r 936 (1286)
.+..+++.+|--+..+...+|-+...- .-++|- ..| -||+.+.-|..-..|+---++..
T Consensus 257 ~enie~A~slTasry~~~e~svhnysL-dcRrLf---DsLreEnlgmlfVYs~k~qRllFAN~~f 317 (401)
T PF06785_consen 257 VENIEAASSLTASRYINSESSVHNYSL-DCRRLF---DSLREENLGMLFVYSPKSQRLLFANSQF 317 (401)
T ss_pred HhhHHHHHHhhHHhhhccCCccccchH-HHHHHH---hhhcccccceEEEecchhhHHHHhHHHH
Confidence 366667766665555555555332210 011111 112 46666777766666554444433
No 239
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.78 E-value=2.2e+02 Score=37.17 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=19.3
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy12517 395 SSLKKELEQTAKNCRILSFKLRKSERRSEQL 425 (1286)
Q Consensus 395 ~eL~KeLheleKncRiLq~kLrKaerk~EEl 425 (1286)
+++.++|..++...+.|+..+.++..++...
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q 665 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDYQ 665 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666654
No 240
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=59.44 E-value=1.4e+02 Score=28.61 Aligned_cols=77 Identities=27% Similarity=0.356 Sum_probs=51.1
Q ss_pred HHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 688 QLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM------------------TKTISDLQTKCSTLEKSLTAEQKQKALK 749 (1286)
Q Consensus 688 ~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a------------------Kk~I~kLEaRI~eLEeeLe~EqRek~ea 749 (1286)
.-+.+.+.+......|+.++.++..-+.+++..- ...+..|+.++..++.+++.-.......
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555556666666666666665321 3567888889999998888887877777
Q ss_pred HHHHHhhhhHHHHhh
Q psy12517 750 EKELKTKESEINVLK 764 (1286)
Q Consensus 750 ~K~~RK~ERrIKEL~ 764 (1286)
.+.+..++..++++.
T Consensus 89 ~~~l~~~~~~l~~~~ 103 (106)
T PF01920_consen 89 EKKLKELKKKLYELF 103 (106)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777776643
No 241
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=59.04 E-value=2e+02 Score=28.73 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 343 EAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDE 381 (1286)
Q Consensus 343 sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEE 381 (1286)
....+..++..++..+..+....+.++..+.+++..+.+
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 242
>KOG0995|consensus
Probab=58.41 E-value=5.1e+02 Score=33.30 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 297 LKLQQRVNELKTENEDLNDEKKSLSLRVREL 327 (1286)
Q Consensus 297 ekLQKklnELQqEIEDLe~Dkk~L~qrLreL 327 (1286)
.++.+..+-+-.+|+++......+.+.+.+.
T Consensus 224 ~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 224 HRLEKYFTSIANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666655555555555533
No 243
>PRK11519 tyrosine kinase; Provisional
Probab=58.03 E-value=2.8e+02 Score=35.93 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12517 451 RIQALEKELKLANETAEKLQKDLKEAT 477 (1286)
Q Consensus 451 ~I~eLEreLk~akEvs~rLq~eLeelE 477 (1286)
.+.+|+++.+.++++=..|....+++.
T Consensus 371 ~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 371 EIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 558889999888887777776666654
No 244
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=57.95 E-value=4.4e+02 Score=32.42 Aligned_cols=100 Identities=14% Similarity=0.278 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12517 247 EYSDQIDLLRHELDNMKAKCEKLERE-KSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVR 325 (1286)
Q Consensus 247 ~~~~~i~~lr~el~~~k~rce~~e~e-ks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLr 325 (1286)
.+.+++..++.....+...++++... +.++-+ + +.+-.-....+..|+..+|++. +--++++-.+.+.+.
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~--~----~~~LqEEr~R~erLEeqlNd~~---elHq~Ei~~LKqeLa 286 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLKEQYQREYQF--I----LEALQEERYRYERLEEQLNDLT---ELHQNEIYNLKQELA 286 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 35556666666666666655555432 112110 0 1011223344556666666653 334578888888888
Q ss_pred HHHHHHH--hhhhHHHHHHHHHHHHHHHHHHH
Q psy12517 326 ELETEAA--AFKKSNAAEREAEALRTKLAAAE 355 (1286)
Q Consensus 326 eLEKKQK--kfdk~eEld~sieELRTKLlsLE 355 (1286)
.+|.|.. ..+++.++...++.+.+++..++
T Consensus 287 ~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 287 SMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8888776 55566666666777777766666
No 245
>KOG0992|consensus
Probab=57.48 E-value=5.1e+02 Score=32.97 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q psy12517 684 EELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVL 763 (1286)
Q Consensus 684 eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL 763 (1286)
.+|..|+ ++|-+....+.|+.++-.|..-+..++++..-.+-.++.-...||++...+.=++.++++.+-++=-..+..
T Consensus 225 ~kl~~Eq-Qlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~e~~e~rk~v~k~~~l~q~~~~~ 303 (613)
T KOG0992|consen 225 GKLNSEQ-QLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAEETTEKRKAVKKRDDLIQSRKQV 303 (613)
T ss_pred HhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444453 499999999999999999999999999888777888888899999888776666655555444443333333
Q ss_pred hhhc
Q psy12517 764 KNQS 767 (1286)
Q Consensus 764 ~~Q~ 767 (1286)
.|+.
T Consensus 304 ~~eL 307 (613)
T KOG0992|consen 304 SFEL 307 (613)
T ss_pred HHHH
Confidence 3333
No 246
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=56.90 E-value=52 Score=31.10 Aligned_cols=53 Identities=28% Similarity=0.444 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHH
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEK 737 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEe 737 (1286)
++++|.+| .++|...-..+...||-|+..+.+.|... ++.+..++..+..|+.
T Consensus 13 ~Ia~L~eE-------GekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 13 QIAQLMEE-------GEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 66776666777888888888888887663 3444444444444443
No 247
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=56.82 E-value=2.5e+02 Score=29.18 Aligned_cols=26 Identities=23% Similarity=0.564 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 361 LMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 361 L~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
-+...+.+...+..+..+++-+...+
T Consensus 50 ~~~~~e~l~~~~~~l~~d~~~l~~~~ 75 (151)
T PF11559_consen 50 DMEQREDLSDKLRRLRSDIERLQNDV 75 (151)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444444444444443333
No 248
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=56.01 E-value=3.4e+02 Score=30.50 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=16.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 305 ELKTENEDLNDEKKSLSLRVRELETEAA 332 (1286)
Q Consensus 305 ELQqEIEDLe~Dkk~L~qrLreLEKKQK 332 (1286)
+|...|+|++.-...+....+.|.....
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve 32 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVE 32 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4555666666666666665555555444
No 249
>KOG0577|consensus
Probab=55.40 E-value=6.1e+02 Score=33.28 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCccccccchheeecccCCCCCCCCCCCCCCCC
Q psy12517 125 VSSSNDSQNSSRRPPPEDSSNEDDDYRSTKYVVRRRTSHLPATSTSSSNAEPS 177 (1286)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1286)
.+-|..||.||-..-|+-+.|++++.-+...+--+...|.|..-+-....+++
T Consensus 357 msisa~sQSSs~nsl~~asdn~~~~~~~~~~~s~~~gpp~p~~amm~~~~~tV 409 (948)
T KOG0577|consen 357 MSISASSQSSSVNSLPDASDNEEEEEESEEEESEEEGPPAPEMAMMMEGEHTV 409 (948)
T ss_pred cceecccccccccchhhhhccccccCCCcccchhhcCCCCchhhhhccCCCcc
Confidence 33344456666555666666666665555555555556666655544433333
No 250
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=54.38 E-value=6.4e+02 Score=33.22 Aligned_cols=9 Identities=11% Similarity=0.298 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy12517 451 RIQALEKEL 459 (1286)
Q Consensus 451 ~I~eLEreL 459 (1286)
+.+.+-.-|
T Consensus 686 Q~~~I~~iL 694 (717)
T PF10168_consen 686 QKRTIKEIL 694 (717)
T ss_pred HHHHHHHHH
Confidence 344444444
No 251
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=54.18 E-value=3.7e+02 Score=30.45 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=48.0
Q ss_pred HhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhHHHHhhhhc
Q psy12517 695 RNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQ-------KQKALKEKELKTKESEINVLKNQS 767 (1286)
Q Consensus 695 klE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~Eq-------Rek~ea~K~~RK~ERrIKEL~~Q~ 767 (1286)
+++..-..|...+-.+-.+|.++.|- ..|.+|+..|.++|..|..-+ .....++...-..-|+|.+|-.--
T Consensus 6 ~~~~~~d~lq~~i~~as~~lNd~TGY--s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK 83 (207)
T PF05546_consen 6 KLSFYMDSLQETIFTASQALNDVTGY--SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRK 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333444444455555555555553 335555555555555555433 334446666666777888876654
Q ss_pred cc---chHHHHHHHH
Q psy12517 768 SD---NVTKQITELK 779 (1286)
Q Consensus 768 ee---kn~~rlqEl~ 779 (1286)
.- .+..|+..|+
T Consensus 84 ~sWs~~DleRFT~Ly 98 (207)
T PF05546_consen 84 HSWSPADLERFTELY 98 (207)
T ss_pred cCCChHHHHHHHHHH
Confidence 43 6788888888
No 252
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=54.17 E-value=3.8e+02 Score=32.94 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHH
Q psy12517 344 AEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSE 419 (1286)
Q Consensus 344 ieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKae 419 (1286)
..+-|.+...++ +.+-+-.+-...|+-+|+.++..|.+.+ +++..+=-|++++.=-+| +.++.|+|
T Consensus 253 LqEEr~R~erLE---eqlNd~~elHq~Ei~~LKqeLa~~EEK~----~Yqs~eRaRdi~E~~Es~---qtRisklE 318 (395)
T PF10267_consen 253 LQEERYRYERLE---EQLNDLTELHQNEIYNLKQELASMEEKM----AYQSYERARDIWEVMESC---QTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHhHHHHHHHHH---HHHHHHHH
Confidence 344444444444 4455666777889999999999988877 455555577777766665 56666666
No 253
>PF15294 Leu_zip: Leucine zipper
Probab=54.01 E-value=4e+02 Score=31.39 Aligned_cols=104 Identities=19% Similarity=0.318 Sum_probs=48.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12517 306 LKTENEDLNDEKKSLSLRVRELETEAAAF-KKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQD 384 (1286)
Q Consensus 306 LQqEIEDLe~Dkk~L~qrLreLEKKQKkf-dk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrD 384 (1286)
|..+|.++..+.+.+..++..+++..... +--..+...+.+++......... ..+-.-...+..|...|..+.+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k-----~~~~~~~q~l~dLE~k~a~lK~ 204 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGK-----KDLSFKAQDLSDLENKMAALKS 204 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccccccchhhHHHHHHHHHH
Confidence 44556666667777777777776654311 11122223333333211111110 0011122233444455555554
Q ss_pred hhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy12517 385 HFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQL 425 (1286)
Q Consensus 385 s~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EEl 425 (1286)
.| .+.+...+++-..|+..|.-....+..+
T Consensus 205 e~-----------ek~~~d~~~~~k~L~e~L~~~KhelL~~ 234 (278)
T PF15294_consen 205 EL-----------EKALQDKESQQKALEETLQSCKHELLRV 234 (278)
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 5556666666666666666655555444
No 254
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.54 E-value=2e+02 Score=34.07 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q psy12517 320 LSLRVRELETEAAAFK-KSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLK 398 (1286)
Q Consensus 320 L~qrLreLEKKQKkfd-k~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~ 398 (1286)
+...+.++|.|.++-- ..+.+|+.-..+-.++.-++-.++++.+.+-.+.+++++ .-
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e----------------------K~ 139 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE----------------------KI 139 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HH
Confidence 3666677777655221 234455544444444444443333333333333333321 13
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy12517 399 KELEQTAKNCRILSFKLRKSERRSEQLEA 427 (1286)
Q Consensus 399 KeLheleKncRiLq~kLrKaerk~EElE~ 427 (1286)
++++..-.+|-.|.+++..++.++.+.+.
T Consensus 140 ~elEr~K~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 140 RELERQKRAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777766543
No 255
>PRK10698 phage shock protein PspA; Provisional
Probab=53.47 E-value=3.7e+02 Score=30.21 Aligned_cols=117 Identities=12% Similarity=0.206 Sum_probs=64.9
Q ss_pred hHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccch----
Q psy12517 696 NAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNV---- 771 (1286)
Q Consensus 696 lE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn---- 771 (1286)
.|.--+-|+.=+.+++.-|.++... ++..-+.-..++ |+...+.....+.+.+..-..-+-.+.-
T Consensus 22 aEDP~k~l~q~i~em~~~l~~~r~a----lA~~~A~~k~~e-------r~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~A 90 (222)
T PRK10698 22 AEDPQKLVRLMIQEMEDTLVEVRST----SARALAEKKQLT-------RRIEQAEAQQVEWQEKAELALRKEKEDLARAA 90 (222)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3333444555566666666555333 333333333333 3333344444444444443333333311
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHH
Q psy12517 772 ---TKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKEN 827 (1286)
Q Consensus 772 ---~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~k 827 (1286)
-..+.+.+..|+.|++.+...+......+.+|+..++++. .....|-.-.+.
T Consensus 91 L~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak----~k~~~L~aR~~~ 145 (222)
T PRK10698 91 LIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETR----ARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 2225666688888888888888888888999999999888 444444333333
No 256
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=53.30 E-value=3.4e+02 Score=32.82 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=78.4
Q ss_pred ccCChhhHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHh-----h-hccccccCcCcHHHHHHHHHHHHHHHHHhHHHH
Q psy12517 242 LVNDNEYSDQIDLLRHELD-NMKAKCEKLEREKSDILLRR-----L-ASMETTTSKTTASELLKLQQRVNELKTENEDLN 314 (1286)
Q Consensus 242 ~v~~~~~~~~i~~lr~el~-~~k~rce~~e~eks~illrr-----l-~~~~t~~~~t~~sELekLQKklnELQqEIEDLe 314 (1286)
-||..+.+-|++..--+|. ..++ ...||..+= + .++.+ ....+.+.|.++...+......|.
T Consensus 190 ~vd~~eWklEvERV~PqLKv~~~~-------d~kDWR~hleqm~~~~~~I~~-~~~~~~~~L~kl~~~i~~~lekI~--- 258 (359)
T PF10498_consen 190 KVDPAEWKLEVERVLPQLKVTIRA-------DAKDWRSHLEQMKQHKKSIES-ALPETKSQLDKLQQDISKTLEKIE--- 258 (359)
T ss_pred cCCHHHHHHHHHHHhhhheeeccC-------CcchHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHH---
Confidence 3577888888888877773 1122 235666331 1 11111 112233334433333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q psy12517 315 DEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEY 394 (1286)
Q Consensus 315 ~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~ 394 (1286)
.-=+++++.+..+=.. ...+.....+++.++..+..-..+...+|..+-.++++.+.+|++.-.++ .+.
T Consensus 259 sREk~iN~qle~l~~e------Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~m-----tD~ 327 (359)
T PF10498_consen 259 SREKYINNQLEPLIQE------YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSM-----TDG 327 (359)
T ss_pred HHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCC
Confidence 2222233333322222 12233334455556666666666667777777777777777777777777 443
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHH
Q psy12517 395 SSLKKELEQTAKNCRILSFKLRKSERR 421 (1286)
Q Consensus 395 ~eL~KeLheleKncRiLq~kLrKaerk 421 (1286)
.-|...-+++..|..+++.|.-+
T Consensus 328 ----sPlv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 328 ----SPLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred ----CHHHHHHHHHHHHHHHHHHhhhh
Confidence 45555666666666666555443
No 257
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=53.28 E-value=5e+02 Score=31.68 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 415 LRKSERRSEQLEAEKLEAEKKCREV 439 (1286)
Q Consensus 415 LrKaerk~EElE~E~~~~E~k~lrl 439 (1286)
+..++..+.++++++..++..+..+
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555556666555555555544
No 258
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=53.00 E-value=3.9e+02 Score=30.35 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEA 432 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~ 432 (1286)
.-.+..+.++...|+.++.+++.+...+.+.....
T Consensus 112 ~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~a 146 (225)
T COG1842 112 EEQVEKLKKQLAALEQKIAELRAKKEALKARKAAA 146 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666777777777777666655544
No 259
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=52.17 E-value=3.7e+02 Score=29.84 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=9.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 302 RVNELKTENEDLNDEKKSLSLRVREL 327 (1286)
Q Consensus 302 klnELQqEIEDLe~Dkk~L~qrLreL 327 (1286)
.+.++...+-.+......+...+..+
T Consensus 39 ~l~~ar~~lA~~~a~~k~~e~~~~~~ 64 (219)
T TIGR02977 39 TLVEVRTTSARTIADKKELERRVSRL 64 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 260
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.93 E-value=1.3e+02 Score=37.12 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEA 432 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~ 432 (1286)
+..+.++...++-|+.++++++.++..|+.++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 137 GSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555566666666666666666665555444
No 261
>PRK10869 recombination and repair protein; Provisional
Probab=51.81 E-value=6.1e+02 Score=32.18 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=17.3
Q ss_pred HHHHHHHHHh---HHHHHHHHHHHHHHHHHHH
Q psy12517 453 QALEKELKLA---NETAEKLQKDLKEATDKLE 481 (1286)
Q Consensus 453 ~eLEreLk~a---kEvs~rLq~eLeelEekle 481 (1286)
.+++++|... ++....|+.++..+..++.
T Consensus 327 ~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~ 358 (553)
T PRK10869 327 QQLLEEQQQLDDQEDDLETLALAVEKHHQQAL 358 (553)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 5666666433 3455666667666666653
No 262
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.58 E-value=4.5e+02 Score=34.19 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy12517 365 NEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 365 LEELKrE~KELReEmEELrDs~ 386 (1286)
+..++..+..|+.++..+...+
T Consensus 341 v~~l~~~~~~L~~~~~~l~~~~ 362 (726)
T PRK09841 341 YRALLEKRQTLEQERKRLNKRV 362 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 263
>PF13166 AAA_13: AAA domain
Probab=51.39 E-value=6.3e+02 Score=32.24 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 299 LQQRVNELKTENEDLNDEKKSLSLRVRELETEAA 332 (1286)
Q Consensus 299 LQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQK 332 (1286)
.......+...+..+...+..+. ..|+.+..
T Consensus 320 ~~~~~~~~~~~~~~l~~~l~~l~---~~L~~K~~ 350 (712)
T PF13166_consen 320 FEEDKEELKSAIEALKEELEELK---KALEKKIK 350 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 33335555555555555444433 44455443
No 264
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=50.97 E-value=5.2e+02 Score=31.21 Aligned_cols=84 Identities=27% Similarity=0.349 Sum_probs=64.7
Q ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------------CcccHHH-HH-HHHHHHHHH
Q psy12517 397 LKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGM-------------EGVNKVE-RI-QALEKELKL 461 (1286)
Q Consensus 397 L~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~-------------~gv~~~~-~I-~eLEreLk~ 461 (1286)
|++-++++...+--|+..|.++...+..+|.....++.++..-.+++ +|++..- .. ..|=.++..
T Consensus 249 l~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~ 328 (384)
T PF03148_consen 249 LRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKE 328 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999998888665 4555311 11 445455566
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy12517 462 ANETAEKLQKDLKEATDKL 480 (1286)
Q Consensus 462 akEvs~rLq~eLeelEekl 480 (1286)
..+....|+..|...+..+
T Consensus 329 l~~~i~~L~~~L~~a~~~l 347 (384)
T PF03148_consen 329 LRESIEALQEKLDEAEASL 347 (384)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666677777777776665
No 265
>PRK11281 hypothetical protein; Provisional
Probab=50.82 E-value=8.7e+02 Score=33.73 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=16.0
Q ss_pred HHHhHHHHHhHHHhHHHHHHhhHH
Q psy12517 693 AQRNAEKVTKLERDKTSLEENLKS 716 (1286)
Q Consensus 693 ~QklE~~rk~LE~qvKELq~RL~E 716 (1286)
+-.++-..++|...+.+|+..|++
T Consensus 430 ~~~l~~~q~Ql~~~~~~l~~~L~~ 453 (1113)
T PRK11281 430 AINLQLNQQQLLSVSDSLQSTLTQ 453 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556777778888877764
No 266
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=50.44 E-value=4.2e+02 Score=29.95 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q psy12517 251 QIDLLRHELDNMKA 264 (1286)
Q Consensus 251 ~i~~lr~el~~~k~ 264 (1286)
+|.-|+.+|....+
T Consensus 11 EIsLLKqQLke~q~ 24 (202)
T PF06818_consen 11 EISLLKQQLKESQA 24 (202)
T ss_pred hHHHHHHHHHHHHH
Confidence 67888888877666
No 267
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=50.24 E-value=2.6e+02 Score=27.53 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12517 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELE 328 (1286)
Q Consensus 294 sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLE 328 (1286)
..|..++..+..+.+.+..+..++.-...-+..|+
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~ 40 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELE 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666655444444444
No 268
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=50.17 E-value=2.2e+02 Score=32.87 Aligned_cols=13 Identities=23% Similarity=0.202 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q psy12517 816 DIKASLVKEKENN 828 (1286)
Q Consensus 816 E~ad~lE~ev~kL 828 (1286)
.-++.|..+++.|
T Consensus 284 ~~~~~l~~ei~~L 296 (297)
T PF02841_consen 284 EEAEKLQKEIQDL 296 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5555556666555
No 269
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.00 E-value=1.6e+02 Score=27.38 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=13.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12517 405 AKNCRILSFKLRKSERRSEQLEAEKLEAEKKCRE 438 (1286)
Q Consensus 405 eKncRiLq~kLrKaerk~EElE~E~~~~E~k~lr 438 (1286)
-.++-.|+-+|.++......++.-++.+|.+...
T Consensus 10 irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~e 43 (61)
T PF08826_consen 10 IRAKQAIQEELTKVKSANLAFESKLQEAEKRNRE 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433333333333
No 270
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=49.64 E-value=3.6e+02 Score=31.70 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12517 366 EEMKKELRYLEEEMDE 381 (1286)
Q Consensus 366 EELKrE~KELReEmEE 381 (1286)
-.++.++..++..+..
T Consensus 245 ~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 245 PSLQARIKSLRKQIDE 260 (362)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 271
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.55 E-value=81 Score=32.23 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=44.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 331 AAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEM 382 (1286)
Q Consensus 331 QKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEEL 382 (1286)
...|+....++..+..+-.++..++..+.++.+++-.|+-||..|+..++++
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777777788888888899999999999999999999999999998876
No 272
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.30 E-value=6.4e+02 Score=31.77 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 354 AEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEA 432 (1286)
Q Consensus 354 LE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~ 432 (1286)
.-..+.++.+.++++...++++..++..+.+.+ +-|-..+.++...|..+++-+|-.---+..+-...++++.++..+
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l-~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l 341 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNYLDEL-EFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQL 341 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777 555566666677777777777666555666666666666555544
No 273
>KOG0999|consensus
Probab=49.22 E-value=7e+02 Score=32.17 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=51.4
Q ss_pred cccchhhh-hhHHHHHHhhhhhHHHH---HHhhhhhhhhhhHHHHHHHhHHHHhhhhhhhHHHHHHHhHH-------HHh
Q psy12517 983 YGRRETSM-DRLEAEEKARKSDVAAV---KMRYDKRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQK-------TIA 1051 (1286)
Q Consensus 983 ~geLe~~~-~~l~~~e~~~k~~~a~~---~~ry~~~~~~~~~e~~~~~~~~~r~kr~rd~~k~~le~aq~-------~~~ 1051 (1286)
.-.+++++ ++|-++=++.|-|+|.. +.=|--|-..+---+..||+|+.----|..|.-++|--|-. -..
T Consensus 649 EK~mvtetm~KlRnELk~Lkedaatfsslramf~~R~ee~~tq~de~~~ql~aaedekKtln~llrmaiqqklaltqrle 728 (772)
T KOG0999|consen 649 EKAMVTETMDKLRNELKALKEDAATFSSLRAMFAARCEEYVTQLDELQRQLAAAEDEKKTLNQLLRMAIQQKLALTQRLE 728 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555 88999999999998863 22233333333344566788887777788888888876532 234
Q ss_pred hhhhcCCCCCccc
Q psy12517 1052 DLKASHNSPTTSR 1064 (1286)
Q Consensus 1052 ~~k~~~~~~~~sr 1064 (1286)
+|.-.|+-.+.+|
T Consensus 729 ~~e~d~~~~~~~R 741 (772)
T KOG0999|consen 729 ELELDHEQQVRKR 741 (772)
T ss_pred HHhccHHHHHHcc
Confidence 5666665444444
No 274
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=48.77 E-value=3.9e+02 Score=32.15 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHH----------HHHHHHH
Q psy12517 294 SELLKLQQRVNELK-TENEDLNDEKKSLSLRVRELETEAAAF-------KKSNAAEREAEALR----------TKLAAAE 355 (1286)
Q Consensus 294 sELekLQKklnELQ-qEIEDLe~Dkk~L~qrLreLEKKQKkf-------dk~eEld~sieELR----------TKLlsLE 355 (1286)
..+..|+..+.-|. ..++.+...+..+...+..+.++.... .++.++..-...+. ++|..+.
T Consensus 246 ~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~ 325 (388)
T PF04912_consen 246 PALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLK 325 (388)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34555555555552 245555555555555555555443311 13333333332222 4555555
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH-HHhHHHHHHHHHhhHHHHHHHHH
Q psy12517 356 GLCEELM---DENEEMKKELRYLEEEMDEMQDHFREDQADEYS-SLKKELEQTAKNCRILSFKLRKS 418 (1286)
Q Consensus 356 ~alEEL~---EeLEELKrE~KELReEmEELrDs~rEe~~de~~-eL~KeLheleKncRiLq~kLrKa 418 (1286)
...+++. ..+..++.....|...+..+...+ ..+. .+..+++-++.|+..|+.++.++
T Consensus 326 ~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L-----~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 326 SLHEEAAEFSQTLSELESQQSDLQSQLKKWEELL-----NKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5544433 556666666666666666666666 2221 14556666666666666666543
No 275
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=48.32 E-value=1.5e+02 Score=27.65 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=31.1
Q ss_pred hhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12517 390 QADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCRE 438 (1286)
Q Consensus 390 ~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lr 438 (1286)
++..-+.++.+|-.+-...-.++-+|+.++.+..+|++++..++....+
T Consensus 9 EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 9 EIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444566666656666667777777777777777777666554443
No 276
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=48.11 E-value=5.4e+02 Score=30.51 Aligned_cols=80 Identities=19% Similarity=0.340 Sum_probs=47.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 301 QRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMD 380 (1286)
Q Consensus 301 KklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmE 380 (1286)
+++.+|.+.++.+.-+...-+-.+..||.-..+.. .-.++-+.+...+......+++..+.+++...-|.-++.
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQK------qK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQK------QKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
Confidence 34566667777776666666666666555332221 112333455666777777777777777777777766665
Q ss_pred HHHhhh
Q psy12517 381 EMQDHF 386 (1286)
Q Consensus 381 ELrDs~ 386 (1286)
-...++
T Consensus 92 ~Ke~qv 97 (307)
T PF10481_consen 92 VKESQV 97 (307)
T ss_pred hhHHHH
Confidence 554444
No 277
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=47.74 E-value=5.7e+02 Score=30.70 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hh--------HHHHHhHHHHHHHHHhhHHHHHHHH
Q psy12517 351 LAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQ-----AD--------EYSSLKKELEQTAKNCRILSFKLRK 417 (1286)
Q Consensus 351 LlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~-----~d--------e~~eL~KeLheleKncRiLq~kLrK 417 (1286)
+.-+-..++..+.+.+.++.-..+|+..+..++...++-+ .+ ....|..-|.++---.+.|+.++..
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~ 90 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE 90 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777778888888888888888887777775444 11 3345566677788888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 418 SERRSEQLEAEKLEAEKKCREVCGGMEGVNK-------VERIQALEKELKLANETAEKLQKDLKEATDK 479 (1286)
Q Consensus 418 aerk~EElE~E~~~~E~k~lrle~~~~gv~~-------~~~I~eLEreLk~akEvs~rLq~eLeelEek 479 (1286)
+..++.++..+...+-.+..+...+..|+.. ...|.+| +.+...-..|++.+..+-++
T Consensus 91 Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL----Ek~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 91 LRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL----EKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877777777776544444431 1123433 45555666666665555333
No 278
>KOG2751|consensus
Probab=47.56 E-value=6.6e+02 Score=31.39 Aligned_cols=126 Identities=20% Similarity=0.232 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 293 ASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK------KSNAAEREAEALRTKLAAAEGLCEELMDENE 366 (1286)
Q Consensus 293 ~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd------k~eEld~sieELRTKLlsLE~alEEL~EeLE 366 (1286)
++--.-..-.++.+..+.+++..+.+....-+..|+...+... ..+.+..+...+-.++..++..-.++-..+.
T Consensus 135 PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~ 214 (447)
T KOG2751|consen 135 PLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLK 214 (447)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556677788888888888888888888887665321 2233333344444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy12517 367 EMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLE 426 (1286)
Q Consensus 367 ELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE 426 (1286)
+++..-.++.+++..+-+.| ....+++-+.+.+.+.|+.+.+=++.+++-+-
T Consensus 215 e~~~~~~~~~e~~~~~~~ey--------~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ 266 (447)
T KOG2751|consen 215 ELEFKAERLNEEEDQYWREY--------NNFQRQLIEHQDELDSLEAQIEYSQAQLDKLR 266 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444 44488888888888888777777777666653
No 279
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=47.42 E-value=5.6e+02 Score=30.51 Aligned_cols=114 Identities=11% Similarity=0.146 Sum_probs=66.9
Q ss_pred hHHHhHHHHHHhhHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--ch----HHH
Q psy12517 702 KLERDKTSLEENLKSKETQM-TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NV----TKQ 774 (1286)
Q Consensus 702 ~LE~qvKELq~RL~E~Es~a-Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn----~~r 774 (1286)
.+-..+-++..+|.+|-... ...|.+++.-|.+....++.-.++-..+...+..+...+.+-..-... -| ...
T Consensus 52 ~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~ 131 (301)
T PF06120_consen 52 EFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQAD 131 (301)
T ss_pred HHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Confidence 44566777777777765433 455555555555555555544444444444444444443332111111 11 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhh
Q psy12517 775 ITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHV 815 (1286)
Q Consensus 775 lqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~v 815 (1286)
+.+-...+.+++..+++.+++...+....|..|.++++.-|
T Consensus 132 ~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 132 ATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333667777888888999999999999999998884444
No 280
>KOG4360|consensus
Probab=46.86 E-value=7.3e+02 Score=31.71 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=12.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q psy12517 301 QRVNELKTENEDLNDEKKSLSLRV 324 (1286)
Q Consensus 301 KklnELQqEIEDLe~Dkk~L~qrL 324 (1286)
...+.+.++++|....+......+
T Consensus 198 ~~y~~~~KelrdtN~q~~s~~eel 221 (596)
T KOG4360|consen 198 QLYGDCVKELRDTNTQARSGQEEL 221 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666655555554433
No 281
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=46.83 E-value=7.1e+02 Score=31.56 Aligned_cols=252 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHhhhccccccCcCcHHHHHHHHH------HHHHHHHHhHHHHHHH
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKLER--EKSDILLRRLASMETTTSKTTASELLKLQQ------RVNELKTENEDLNDEK 317 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~e~--eks~illrrl~~~~t~~~~t~~sELekLQK------klnELQqEIEDLe~Dk 317 (1286)
..+-.+|+.|+++++.+-...--|++ ++-..|=++--+|..-+++--++.-...+| .+.+|+.+|+..+.++
T Consensus 267 ~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei 346 (622)
T COG5185 267 HIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEI 346 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy12517 318 KSLSLRVRELETEAAAFK-KSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSS 396 (1286)
Q Consensus 318 k~L~qrLreLEKKQKkfd-k~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~e 396 (1286)
+.++.....|-...++.+ ...+. +.+..+-..+...++-.-.+.+.|-..|..-..+.+..-+++ |.-+-+|..
T Consensus 347 ~~L~~~~d~L~~q~~kq~Is~e~f----e~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~sl-ek~~~~~~s 421 (622)
T COG5185 347 KALQSNIDELHKQLRKQGISTEQF----ELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSL-EKTLRQYDS 421 (622)
T ss_pred HHHHhhHHHHHHHHHhcCCCHHHH----HHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHH
Q ss_pred HhHHHHHH-----------------------------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12517 397 LKKELEQT-----------------------------------AKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCG 441 (1286)
Q Consensus 397 L~KeLhel-----------------------------------eKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~ 441 (1286)
|.-++-.. ++-.+-.+-+...-+-+.-.||......+.-..++.
T Consensus 422 l~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~- 500 (622)
T COG5185 422 LIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELT- 500 (622)
T ss_pred HHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHH-
Q ss_pred CCCcccHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHH
Q psy12517 442 GMEGVNKVERIQALEKEL-------KLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEAT 514 (1286)
Q Consensus 442 ~~~gv~~~~~I~eLEreL-------k~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~~~~a~~~kkKLE~dL~ElE 514 (1286)
+.+..+|-+| ...++..-+.++.-+.-=++|+.+-...+ ....--=..+++.+.-.+
T Consensus 501 --------~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln--------L~s~ts~l~~eq~vqs~~ 564 (622)
T COG5185 501 --------QILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN--------LLSKTSILDAEQLVQSTE 564 (622)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh--------hhccchHhhHHHHHHHHH
Q ss_pred HHHHH
Q psy12517 515 DKLER 519 (1286)
Q Consensus 515 ~kle~ 519 (1286)
+++|.
T Consensus 565 i~ld~ 569 (622)
T COG5185 565 IKLDE 569 (622)
T ss_pred hhHHH
No 282
>PF14992 TMCO5: TMCO5 family
Probab=46.81 E-value=3.4e+02 Score=31.98 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 297 LKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAA-AFK----KSNAAEREAEALRTKLAAAEGLCEELMDENEEMKK 370 (1286)
Q Consensus 297 ekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQK-kfd----k~eEld~sieELRTKLlsLE~alEEL~EeLEELKr 370 (1286)
...+..+.+|.-+...++-..+++...+.+|.+++. .+. -...+..+..++..++..+...|..+..++..+..
T Consensus 59 ~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 59 EERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred hchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777778888888888888889988866 111 11123344444444555555555555555444444
No 283
>PLN03188 kinesin-12 family protein; Provisional
Probab=46.77 E-value=1e+03 Score=33.46 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=35.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHhhhhhHHHHHHHHHhhhh
Q psy12517 556 VLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKS 627 (1286)
Q Consensus 556 ~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~~~~~~~~~~~~L~~ElekLrs~ae~E~~EL~eELesL~s 627 (1286)
+|.--|-++-|...-..++...+|.++ +.+..++++|+.+-+.|+.-|...+.+.+.
T Consensus 1201 ellvrl~eaeea~~~a~~r~~~~eqe~---------------~~~~k~~~klkrkh~~e~~t~~q~~aes~l 1257 (1320)
T PLN03188 1201 ELLVRLKEAEEALTVAQKRAMDAEQEA---------------AEAYKQIDKLKRKHENEISTLNQLVAESRL 1257 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344555555555555555555555554 557778999988777777777766655544
No 284
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=46.74 E-value=1.8e+02 Score=28.48 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 345 EALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 345 eELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
++++.+-..+....+.+....+++..++.+|+.+...+++.+
T Consensus 28 eELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 28 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344455555566666777777777777777777766
No 285
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.36 E-value=4.8e+02 Score=29.42 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREV 439 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrl 439 (1286)
.++++.++.-++.|+-.+...+..+.+++......+.-..++
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555554444444433333
No 286
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=46.23 E-value=4.8e+02 Score=29.45 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=29.5
Q ss_pred hhhHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhcCCcchhhhhhHh
Q psy12517 923 ESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQS 970 (1286)
Q Consensus 923 d~V~~rl~el~s~r~~~Ls~Ere~IlErIeq~ek~kkd~~sfM~sfea 970 (1286)
..+-..+..+-..... |..+|..+++.+.. .-..++...+|..|..
T Consensus 140 ~~~i~~L~~ll~~l~~-l~~eR~~~~~~lk~-~~~~d~i~~~l~~~~~ 185 (296)
T PF13949_consen 140 SEVIRQLRELLNKLEE-LKKEREELLEQLKE-KLQNDDISKLLSELNK 185 (296)
T ss_dssp -HHHHHHHHHHHHHHH-HHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHhhccHHHHHHHhhc
Confidence 5556777777777888 88999998888887 2245565566665553
No 287
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=46.18 E-value=4.2e+02 Score=28.75 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDIL 277 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~e~eks~il 277 (1286)
.+..++|..|...|..+-..++++-+...++.
T Consensus 27 ~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~ 58 (236)
T PF09325_consen 27 EEIKDYVDKLEEQLKKLYKSLERLVKRRQELA 58 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999998888876
No 288
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=45.92 E-value=4.3e+02 Score=28.73 Aligned_cols=116 Identities=19% Similarity=0.294 Sum_probs=84.2
Q ss_pred HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhHHHHH
Q psy12517 322 LRVRELETEAA-AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF---REDQADEYSSL 397 (1286)
Q Consensus 322 qrLreLEKKQK-kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~---rEe~~de~~eL 397 (1286)
.-+..++.-.. .|+-.+..-.....++.+|..+.....+..++.+.++...+..+..+.+.--.| -|+|+-++
T Consensus 6 ~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~A--- 82 (159)
T PF05384_consen 6 KTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEA--- 82 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHH---
Confidence 34444444333 677777777777888888888888888888999999998888888887777777 46665554
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
=-..+.+....-++..+-.-+..++++||-.+..+..-+.+.+
T Consensus 83 Ye~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE 125 (159)
T PF05384_consen 83 YEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAE 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777766666666655
No 289
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=45.81 E-value=3.6e+02 Score=27.83 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=7.3
Q ss_pred HHHhhHHHHHHHHHHHHH
Q psy12517 405 AKNCRILSFKLRKSERRS 422 (1286)
Q Consensus 405 eKncRiLq~kLrKaerk~ 422 (1286)
++-|+-|+.++-++.+.+
T Consensus 57 ~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 57 NQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 290
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=45.69 E-value=5e+02 Score=29.48 Aligned_cols=89 Identities=13% Similarity=0.236 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHH
Q psy12517 339 AAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKS 418 (1286)
Q Consensus 339 Eld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKa 418 (1286)
+.+..+..+|..+..+...|.......-...+++-.|-.. +++--..|+.-|++|=|+=|.++..-..+...+..+
T Consensus 43 ~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR----K~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~a 118 (207)
T PF05546_consen 43 ELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR----KHSWSPADLERFTELYRNDHENEQAEEEAKEALEEA 118 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3344467777888888888888888888888888777665 444456678899999999999999999999899888
Q ss_pred HHHHHHHHHHHHH
Q psy12517 419 ERRSEQLEAEKLE 431 (1286)
Q Consensus 419 erk~EElE~E~~~ 431 (1286)
+...+.+-+.+..
T Consensus 119 E~~~e~~~~~L~~ 131 (207)
T PF05546_consen 119 EEKVEEAFDDLMR 131 (207)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887766543
No 291
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=45.45 E-value=9.7e+02 Score=32.74 Aligned_cols=29 Identities=10% Similarity=0.152 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy12517 294 SELLKLQQRVNELKTENEDLNDEKKSLSL 322 (1286)
Q Consensus 294 sELekLQKklnELQqEIEDLe~Dkk~L~q 322 (1286)
..+..+.+.+..+...+..+...+.....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 325 (1047)
T PRK10246 297 ERIQEQSAALAHTRQQIEEVNTRLQSTMA 325 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 292
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.28 E-value=74 Score=33.90 Aligned_cols=77 Identities=31% Similarity=0.439 Sum_probs=57.9
Q ss_pred HHHHHHHhHHHHhhhhhhhHHHHHHHhHHHHhhhhhcCCCCCccccCCCCccccccccchhhccccccchhhhhcccCcc
Q psy12517 1020 DELKAIQGQVLRFKRERDTFKHMLEGAQKTIADLKASHNSPTTSRLSGGSTHSEVITTSDRKKKGLFGKLKQLTRSSHSV 1099 (1286)
Q Consensus 1020 ~e~~~~~~~~~r~kr~rd~~k~~le~aq~~~~~~k~~~~~~~~srls~gSt~s~~~~~~~~~~kg~~~kl~~~~~~~~~~ 1099 (1286)
.++......|.-.+-+|++|+.=|..|+++|.+|+.+.
T Consensus 13 k~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~------------------------------------------ 50 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSA------------------------------------------ 50 (155)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------------------------------
Confidence 33444455555556688889999999999999999864
Q ss_pred CCCCCCCcCCCCCCcccccccchhhhhhhcccccCCCCCCCChhhhhhHHHHHHHhhh----hhhhhhhhhhhhhccchh
Q psy12517 1100 DRDSDTSQFDPGSDTSLDDSRNLKDRITGIFKKSGSTSRANSVDDLKAVITSLEQQIS----CMEDELSESRLETSRLKT 1175 (1286)
Q Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~fk~~~~~~~~~s~~~~~~~~~~leqqi~----~~ed~l~e~rle~s~~~~ 1175 (1286)
.+.+++++.|..|++.+. ..+.+|....+. +-|+.
T Consensus 51 ----------------------------------------~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~-~ai~~ 89 (155)
T PF06810_consen 51 ----------------------------------------KDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKD-SAIKS 89 (155)
T ss_pred ----------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 378999999999999998 777777777763 34566
Q ss_pred hhcc
Q psy12517 1176 ELVS 1179 (1286)
Q Consensus 1176 elvs 1179 (1286)
.|.+
T Consensus 90 al~~ 93 (155)
T PF06810_consen 90 ALKG 93 (155)
T ss_pred HHHH
Confidence 5554
No 293
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.23 E-value=2.4e+02 Score=37.11 Aligned_cols=39 Identities=28% Similarity=0.192 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q psy12517 725 ISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVL 763 (1286)
Q Consensus 725 I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL 763 (1286)
|.+|+....++|...+.-.+.+.++.+..++++.+.++|
T Consensus 517 i~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444443
No 294
>KOG1850|consensus
Probab=43.36 E-value=6.8e+02 Score=30.32 Aligned_cols=66 Identities=15% Similarity=0.271 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCc
Q psy12517 777 ELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPW 846 (1286)
Q Consensus 777 El~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~~kg~~i~~~~~ 846 (1286)
..+..+++.=--+-++.+...++|..+|.=|-... +.-..+-.+++++-.++-..-|++-|-+..|
T Consensus 208 ~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSN----E~F~~fK~E~ekmtKk~kklEKE~l~wr~K~ 273 (391)
T KOG1850|consen 208 IMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSN----ELFTKFKQEMEKMTKKIKKLEKETLIWRTKW 273 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455667788999999999999999 9999999999999998888777776644333
No 295
>KOG4302|consensus
Probab=42.93 E-value=9.2e+02 Score=31.72 Aligned_cols=170 Identities=16% Similarity=0.244 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 296 LLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYL 375 (1286)
Q Consensus 296 LekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KEL 375 (1286)
+........+|.++|.+.+.++..+-..+-..-.--. . .+.-..-|...+.++...++.++.+.++-..+..++
T Consensus 56 ve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~---~---~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el 129 (660)
T KOG4302|consen 56 VEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE---I---SDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKEL 129 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc---c---ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666665555444433222111 0 011112445557777777777777777777777777
Q ss_pred HHHHHHHHhhhhhh------hhhHHHHHh-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccH
Q psy12517 376 EEEMDEMQDHFRED------QADEYSSLK-KELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNK 448 (1286)
Q Consensus 376 ReEmEELrDs~rEe------~~de~~eL~-KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~ 448 (1286)
..+++.+-..+-+- .+.+...|- +.|+++.--...|+-+...=-.++.++..++. .++ ...|+..
T Consensus 130 ~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~-------~l~-~~Lg~~~ 201 (660)
T KOG4302|consen 130 YHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIK-------SLC-SVLGLDF 201 (660)
T ss_pred HHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-HHhCCCc
Confidence 77777666555222 111222222 45555554444444443332233333322222 222 1135555
Q ss_pred HHHHHHHHHHHH---------HhHHHHHHHHHHHHHHHHH
Q psy12517 449 VERIQALEKELK---------LANETAEKLQKDLKEATDK 479 (1286)
Q Consensus 449 ~~~I~eLEreLk---------~akEvs~rLq~eLeelEek 479 (1286)
...|.+++..|- +..+.-.+|++.|..+.+.
T Consensus 202 ~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~ 241 (660)
T KOG4302|consen 202 SMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEE 241 (660)
T ss_pred ccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 334567777772 3345666777777766544
No 296
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.68 E-value=3.3e+02 Score=26.60 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=22.7
Q ss_pred cCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy12517 288 TSKTTASELLKLQQRVNELKTENEDLNDEKKSL 320 (1286)
Q Consensus 288 ~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L 320 (1286)
+.....+.+..++..+..|..+++.++..+.+.
T Consensus 6 ~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~ 38 (100)
T PF01486_consen 6 GTDLWDSQHEELQQEIAKLRKENESLQKELRHL 38 (100)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455667777888777777777777766555543
No 297
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=42.26 E-value=6.6e+02 Score=29.86 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy12517 247 EYSDQIDLLRHELDNMKA 264 (1286)
Q Consensus 247 ~~~~~i~~lr~el~~~k~ 264 (1286)
||...|..=|..+..+.+
T Consensus 74 EL~~~I~egr~~~~~~E~ 91 (312)
T smart00787 74 ELKKYISEGRDLFKEIEE 91 (312)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 298
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.19 E-value=61 Score=40.14 Aligned_cols=85 Identities=26% Similarity=0.316 Sum_probs=52.7
Q ss_pred Ccccccccccccc-CChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHH
Q psy12517 231 GTETTDTTETTLV-NDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTE 309 (1286)
Q Consensus 231 ~~~~t~~t~~t~v-~~~~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqE 309 (1286)
.-||..+|=.||| ...++..++..|..+++.+++.-+++.+.-++|=-| .-..++-...+++++
T Consensus 53 egDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~---------------i~~av~~~~~~~~~~ 117 (472)
T TIGR03752 53 EGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQ---------------IQQAVQSETQELTKE 117 (472)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---------------HHHHHHhhhHHHHHH
Confidence 5688899999999 668999999999999999999666554333332211 112222333444555
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy12517 310 NEDLNDEKKSLSLRVRELETE 330 (1286)
Q Consensus 310 IEDLe~Dkk~L~qrLreLEKK 330 (1286)
++.+..++..+...+..|..+
T Consensus 118 ~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 118 IEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 299
>PTZ00464 SNF-7-like protein; Provisional
Probab=41.18 E-value=5.7e+02 Score=28.84 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHH--HHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12517 248 YSDQIDLLRHELDNMKAKCEKLEREKSDIL--LRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVR 325 (1286)
Q Consensus 248 ~~~~i~~lr~el~~~k~rce~~e~eks~il--lrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLr 325 (1286)
+++-|..|+..++.+..|..+++.|.+..- ++.... .+..+.-.....+=+.+.-+++.++.+..-...+.+.+.
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~---~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~ 92 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRG---MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQF 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999988888755442 322211 111111122222234444555555555555555555555
Q ss_pred HHHHH
Q psy12517 326 ELETE 330 (1286)
Q Consensus 326 eLEKK 330 (1286)
.++.-
T Consensus 93 ~ie~a 97 (211)
T PTZ00464 93 TTESV 97 (211)
T ss_pred HHHHH
Confidence 55543
No 300
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=41.06 E-value=6.9e+02 Score=29.78 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=62.2
Q ss_pred cccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 284 METTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK-----KSNAAEREAEALRTKLAAAEGLC 358 (1286)
Q Consensus 284 ~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd-----k~eEld~sieELRTKLlsLE~al 358 (1286)
|.+||...-.+.+.++...+..+...|+++...++.++..+..+........ .+...-.++.++-.++..+...+
T Consensus 64 l~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L 143 (301)
T PF06120_consen 64 LKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATREL 143 (301)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888889999999999999999999888888877665433111 22212223444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 359 EELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 359 EEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
......++........++..+.++.+..
T Consensus 144 ~~~~~~l~q~~~k~~~~q~~l~~~~~~~ 171 (301)
T PF06120_consen 144 AVAQERLEQMQSKASETQATLNDLTEQR 171 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554444444
No 301
>KOG2077|consensus
Probab=40.91 E-value=8.5e+02 Score=31.60 Aligned_cols=104 Identities=22% Similarity=0.348 Sum_probs=77.0
Q ss_pred ccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 285 ETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDE 364 (1286)
Q Consensus 285 ~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~Ee 364 (1286)
+-+.+--.+..+.-|-+.+..|.-+.-.+..-++.|+=--..| ..+..++..+..-||-++.+.+.+-..+.+.
T Consensus 285 ~liGdvdegAdllGMGrEVeNLilENsqLLetKNALNiVKNDL------IakVDeL~~E~~vLrgElea~kqak~Klee~ 358 (832)
T KOG2077|consen 285 GLIGDVDEGADLLGMGREVENLILENSQLLETKNALNIVKNDL------IAKVDELTCEKDVLRGELEAVKQAKLKLEEK 358 (832)
T ss_pred cccccccchhhhhcchHHHHHHHHhhHHHHhhhhHHHHHHHHH------HHHHHhhccHHHHHhhHHHHHHHHHHHHHHH
Confidence 4445566677777777777777776666665555554322222 2345667777888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q psy12517 365 NEEMKKELRYLEEEMDEMQDHFREDQADEY 394 (1286)
Q Consensus 365 LEELKrE~KELReEmEELrDs~rEe~~de~ 394 (1286)
+-+++.+++.++.+..+.+...-+++-|++
T Consensus 359 i~elEEElk~~k~ea~~ar~~~~~~e~ddi 388 (832)
T KOG2077|consen 359 IRELEEELKKAKAEAEDARQKAKDDEDDDI 388 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999998877767666665
No 302
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=40.49 E-value=3.5e+02 Score=32.69 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=7.8
Q ss_pred hHHHhHHHHHHhhHHHhhh
Q psy12517 702 KLERDKTSLEENLKSKETQ 720 (1286)
Q Consensus 702 ~LE~qvKELq~RL~E~Es~ 720 (1286)
.++....+.+..|+.+-+.
T Consensus 231 ~I~~~~~~~~~~L~kl~~~ 249 (359)
T PF10498_consen 231 SIESALPETKSQLDKLQQD 249 (359)
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444333
No 303
>KOG4403|consensus
Probab=40.48 E-value=4.6e+02 Score=32.75 Aligned_cols=72 Identities=26% Similarity=0.318 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhH--HHHHHHHHhhHHHHHHHHHHHHH
Q psy12517 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKK--ELEQTAKNCRILSFKLRKSERRS 422 (1286)
Q Consensus 349 TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~K--eLheleKncRiLq~kLrKaerk~ 422 (1286)
+.|..+++.++++++.|+....+.++..-|--+|..-++ +|+-+.+|+- +.|..-|..-.|-..|++||+.+
T Consensus 252 e~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~--ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 252 EGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD--EAPRLSELREGVENETSRKELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh--hhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777787777777777777666666662 4455555533 33333333333333444444433
No 304
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=40.36 E-value=1.1e+02 Score=36.19 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=10.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Q psy12517 402 EQTAKNCRILSFKLRKSERRSEQL 425 (1286)
Q Consensus 402 heleKncRiLq~kLrKaerk~EEl 425 (1286)
+.+.+....|+.+....++++..+
T Consensus 259 ~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 259 EEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccH
Confidence 333444444444444444444443
No 305
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=40.33 E-value=4.4e+02 Score=27.34 Aligned_cols=43 Identities=26% Similarity=0.398 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 344 AEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 344 ieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
+..++.....+...++.+.+.++.+++++.........+...+
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555544444444443333
No 306
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=40.24 E-value=5.7e+02 Score=28.60 Aligned_cols=168 Identities=19% Similarity=0.281 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 296 LLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAA----AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKE 371 (1286)
Q Consensus 296 LekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQK----kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE 371 (1286)
+....+....|+..|.++-..+..++..+..+..... .+. .....+|..++......+..+...+-.+...
T Consensus 33 ~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~-----~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~ 107 (240)
T PF12795_consen 33 IKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILA-----NLSLEELEQRLSQEQAQLQELQEQLQQENSQ 107 (240)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666777777777777777766655410 111 1123344444444455555555555555555
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q psy12517 372 LRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRIL----SFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVN 447 (1286)
Q Consensus 372 ~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiL----q~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~ 447 (1286)
+..+....+..+..+ .+. .+.+.+++.....+ .--+..+.+-..++|-..-..+..+++.+ +.|.+
T Consensus 108 l~~~~~~p~~aq~~l-----~~~---~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~e--l~s~~ 177 (240)
T PF12795_consen 108 LIEIQTRPERAQQQL-----SEA---RQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQE--LLSNN 177 (240)
T ss_pred HHHHHccHHHHHHHH-----HHH---HHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH--HHCcH
Confidence 555555555555555 333 44455554443332 12344444444444433333333333332 23444
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12517 448 KVERIQALEKELKLANETAEKLQKDLKEATDKL 480 (1286)
Q Consensus 448 ~~~~I~eLEreLk~akEvs~rLq~eLeelEekl 480 (1286)
.-+-+..+.+++ ++-.--++...|..++.-+
T Consensus 178 ~rq~L~~~qrdl--~~~~~~~l~~~l~~Lq~~l 208 (240)
T PF12795_consen 178 NRQELLQLQRDL--LKARIQRLQQQLQALQNLL 208 (240)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 333445555555 2223334455555555544
No 307
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=39.75 E-value=3.2e+02 Score=25.86 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12517 361 LMDENEEMKKELRYLEEEMDE 381 (1286)
Q Consensus 361 L~EeLEELKrE~KELReEmEE 381 (1286)
+-..+..|+.+++.++.+++.
T Consensus 45 a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 45 AYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 308
>PRK11519 tyrosine kinase; Provisional
Probab=39.75 E-value=9.9e+02 Score=31.18 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=4.0
Q ss_pred CCCCCCCCC
Q psy12517 3 HIKPTLKGD 11 (1286)
Q Consensus 3 ~~~~~~~~~ 11 (1286)
|..|....|
T Consensus 8 ~~~~~~~~~ 16 (719)
T PRK11519 8 HAAPVTGSD 16 (719)
T ss_pred cccCCCCcC
Confidence 444444444
No 309
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=39.58 E-value=5.8e+02 Score=28.44 Aligned_cols=103 Identities=8% Similarity=0.119 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 723 KTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYED 802 (1286)
Q Consensus 723 k~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~KqyKRQlEEaEEea~~~~akyRK 802 (1286)
-.+..|+..|++.|.-++.+...-..++.++....+-.+.... +...|+.+++..+.-+..++..+......+..
T Consensus 67 ~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~-----q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 67 QIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQ-----QLETLKAALKAAQANLANAEQVAEGAQQELAE 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888889999988888888888877777777766555444 35677788888888888888888888877777
Q ss_pred HHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 803 LTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 803 LQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
-+.-|+.+. .+.+.|.+++...|..+..
T Consensus 142 K~qLLeaAk----~Rve~L~~QL~~Ar~D~~~ 169 (188)
T PF05335_consen 142 KTQLLEAAK----RRVEELQRQLQAARADYEK 169 (188)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 777788888 8888888888888877765
No 310
>PRK12704 phosphodiesterase; Provisional
Probab=39.38 E-value=9e+02 Score=30.64 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=8.3
Q ss_pred hhhhHhHHHHHHhhcCC
Q psy12517 965 LTSFQSIDDAYENVKYT 981 (1286)
Q Consensus 965 M~sfeaInkIf~~LS~G 981 (1286)
..+|..|.+.|. +.+|
T Consensus 452 ~~~~~gv~~~ya-iqaG 467 (520)
T PRK12704 452 ANSFEGVEKAYA-IQAG 467 (520)
T ss_pred HHhCCcHHHHHH-HhcC
Confidence 344566666555 3444
No 311
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.31 E-value=2.7e+02 Score=32.91 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=42.3
Q ss_pred HHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcc
Q psy12517 703 LERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSS 768 (1286)
Q Consensus 703 LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~e 768 (1286)
=|..|+.|++||.|.+... -..|..|.+.+.-+.++-=.|.=-+.+|+-.++-.-++||-|+--++
T Consensus 66 KEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvie 134 (305)
T PF15290_consen 66 KEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIE 134 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888887664 23466666666666555444444566677777777778876554444
No 312
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.17 E-value=3.5e+02 Score=25.81 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 363 DENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 363 EeLEELKrE~KELReEmEELrDs~ 386 (1286)
++++.++.++..|+.+...+++.+
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544
No 313
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.14 E-value=5.7e+02 Score=28.21 Aligned_cols=91 Identities=19% Similarity=0.301 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH--------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy12517 293 ASELLKLQQRVNELKTENEDLNDEKKS--------------------LSLRVRELETEAAAFKKSNAAEREAEALRTKLA 352 (1286)
Q Consensus 293 ~sELekLQKklnELQqEIEDLe~Dkk~--------------------L~qrLreLEKKQKkfdk~eEld~sieELRTKLl 352 (1286)
+..+.+||.++..+...+.+++.-+.. +...+.-|+..+..- .++..-..-||.++.
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~---~~L~qvN~lLReQLE 91 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRS---EELAQVNALLREQLE 91 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHH
Confidence 455666666666666666666555411 112233333332211 112222334555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 353 AAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 353 sLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
.+..+.+.|.+.+..+......++.++......+
T Consensus 92 q~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~ 125 (182)
T PF15035_consen 92 QARKANEALQEDLQKLTQDWERLRDELEQKEAEW 125 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555444444
No 314
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=38.63 E-value=6.3e+02 Score=28.57 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12517 464 ETAEKLQKDLKEATDKL 480 (1286)
Q Consensus 464 Evs~rLq~eLeelEekl 480 (1286)
.|+..+..++--+++.+
T Consensus 154 ~v~~~~~~e~~aLqa~l 170 (207)
T PF05010_consen 154 QVRSKHQAELLALQASL 170 (207)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 34444444444444443
No 315
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.48 E-value=1.3e+02 Score=28.48 Aligned_cols=61 Identities=21% Similarity=0.374 Sum_probs=38.6
Q ss_pred HHHHhhhhHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy12517 751 KELKTKESEINVLKNQSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILE 811 (1286)
Q Consensus 751 K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae 811 (1286)
+.++-.+-.|..|+.-.+. +.-..+...+|.|+-++.++|..+.....+..++..+++.+.
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555544443 334445556688888888888888777777777776666665
No 316
>PF13166 AAA_13: AAA domain
Probab=37.56 E-value=9.9e+02 Score=30.55 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 351 LAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 351 LlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
+..++..+..+...+..++..+..+..++.++..++
T Consensus 419 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 454 (712)
T PF13166_consen 419 IKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQL 454 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444
No 317
>PF15456 Uds1: Up-regulated During Septation
Probab=37.03 E-value=4e+02 Score=27.77 Aligned_cols=90 Identities=22% Similarity=0.373 Sum_probs=58.0
Q ss_pred ccccCChhh----HHHHHHHHHHHHHHHHHHHHhhhhhhhHH--HHhhhc-cc----c--ccCcCcHHHHHHHHHHHHHH
Q psy12517 240 TTLVNDNEY----SDQIDLLRHELDNMKAKCEKLEREKSDIL--LRRLAS-ME----T--TTSKTTASELLKLQQRVNEL 306 (1286)
Q Consensus 240 ~t~v~~~~~----~~~i~~lr~el~~~k~rce~~e~eks~il--lrrl~~-~~----t--~~~~t~~sELekLQKklnEL 306 (1286)
+-|+|+..| .++++.|+.|+..+..||+-+-+-=. +. +|..|. |- + ....+....+...+..+...
T Consensus 8 tAl~ds~~feiLs~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~ 86 (124)
T PF15456_consen 8 TALGDSKEFEILSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAES 86 (124)
T ss_pred HHHHHHHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHH
Confidence 344455443 47899999999999999987754322 21 222221 11 1 11223345677777888888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q psy12517 307 KTENEDLNDEKKSLSLRVRELETE 330 (1286)
Q Consensus 307 QqEIEDLe~Dkk~L~qrLreLEKK 330 (1286)
...|+++..++..+..++..+..+
T Consensus 87 ~rk~ee~~~eL~~le~R~~~~~~r 110 (124)
T PF15456_consen 87 DRKCEELAQELWKLENRLAEVRQR 110 (124)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888777765
No 318
>PF15294 Leu_zip: Leucine zipper
Probab=36.99 E-value=6e+02 Score=30.00 Aligned_cols=66 Identities=24% Similarity=0.301 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHH-------HHHHhhhhhhhHH-----HHhhhccccc--cCcCcHHHHHHHHHHHHHHHHHhHHH
Q psy12517 248 YSDQIDLLRHELDNMKA-------KCEKLEREKSDIL-----LRRLASMETT--TSKTTASELLKLQQRVNELKTENEDL 313 (1286)
Q Consensus 248 ~~~~i~~lr~el~~~k~-------rce~~e~eks~il-----lrrl~~~~t~--~~~t~~sELekLQKklnELQqEIEDL 313 (1286)
+..+|..|+.|++.+|+ +|-.+=+||+.|- ||..++-... .....+..+..|+.++.-+..+++..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 44455555555555555 5666666666654 3332221111 11234555666666665555444433
No 319
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=36.94 E-value=8.3e+02 Score=29.48 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---------hhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12517 353 AAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQ---------ADEYSSLKKELEQTAKNCRILSFKLRKSERRSE 423 (1286)
Q Consensus 353 sLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~---------~de~~eL~KeLheleKncRiLq~kLrKaerk~E 423 (1286)
.+...++-.++++.=|.+..++--.|++-|...++|=+ +..++..++.+++++..+|+|+-+|--+..-.-
T Consensus 11 EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELARaKV~aN 90 (351)
T PF07058_consen 11 ELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELARAKVSAN 90 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34455555556666666666666666666666554311 244555588888888888888777765554444
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchHHH
Q psy12517 424 QLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETA 503 (1286)
Q Consensus 424 ElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~~~~a~~~k 503 (1286)
++.--.+.. --...+.|-. | +.--|-++=||.++..|-+||....+... .....+
T Consensus 91 RVA~vvANE------WKD~nDkvMP---V-------KqWLEERR~lQgEmQ~LrDKLAiaERtAk---------aEaQLk 145 (351)
T PF07058_consen 91 RVATVVANE------WKDENDKVMP---V-------KQWLEERRFLQGEMQQLRDKLAIAERTAK---------AEAQLK 145 (351)
T ss_pred hhhhhhccc------ccccCCcccc---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Confidence 332111100 0000011111 1 22223477799999999999965433221 233778
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy12517 504 EKLQKDLKEATDKLERAN 521 (1286)
Q Consensus 504 kKLE~dL~ElE~kle~an 521 (1286)
.||.-.|+=|+.-|-+.+
T Consensus 146 eK~klRLK~LEe~Lk~~~ 163 (351)
T PF07058_consen 146 EKLKLRLKVLEEGLKGSS 163 (351)
T ss_pred HHHHHHHHHHHhhccCCC
Confidence 888888988887775554
No 320
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=36.85 E-value=46 Score=32.81 Aligned_cols=35 Identities=34% Similarity=0.528 Sum_probs=30.7
Q ss_pred HHHHH----HhhhhhhhhhhHHHHHHHhHHHHhhhhhhh
Q psy12517 1004 VAAVK----MRYDKRATALSDELKAIQGQVLRFKRERDT 1038 (1286)
Q Consensus 1004 ~a~~~----~ry~~~~~~~~~e~~~~~~~~~r~kr~rd~ 1038 (1286)
|++.| .||+.+|..|..++.++...|.+++...|+
T Consensus 36 V~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 36 VKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999 999999999999999999999988776554
No 321
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=36.65 E-value=2.4e+02 Score=31.63 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhH---------HHHhhhccccccCcCcHHHHHHHHHHHHHHH-------HHhHHHH
Q psy12517 251 QIDLLRHELDNMKAKCEKLEREKSDI---------LLRRLASMETTTSKTTASELLKLQQRVNELK-------TENEDLN 314 (1286)
Q Consensus 251 ~i~~lr~el~~~k~rce~~e~eks~i---------llrrl~~~~t~~~~t~~sELekLQKklnELQ-------qEIEDLe 314 (1286)
|+-.|+.||..|.++..+++++-+.- |+|+-. ..-|...++.+.++. .-+..+.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~----------EqLL~YK~~ql~~~~~~~~~~~~~l~~v~ 166 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREF----------EQLLDYKERQLRELEEGRSKSGKNLKSVR 166 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHH----------HHHHHHHHHHHHhhhccCCCCCCCHHHHH
Confidence 77789999999999999988876652 222210 111222333333332 2245666
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12517 315 DEKKSLSLRVRELETE 330 (1286)
Q Consensus 315 ~Dkk~L~qrLreLEKK 330 (1286)
.|++...+.|.-||.=
T Consensus 167 ~Dl~~ie~QV~~Le~~ 182 (195)
T PF12761_consen 167 EDLDTIEEQVDGLESH 182 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777764
No 322
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=36.12 E-value=2.2e+02 Score=29.96 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRS 422 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~ 422 (1286)
...|.++++||+++.-+.++...+.
T Consensus 61 ~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 61 YEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5667889999999998888777665
No 323
>KOG3091|consensus
Probab=35.80 E-value=9.3e+02 Score=30.65 Aligned_cols=164 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccccCCchh
Q psy12517 780 TQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVA 859 (1286)
Q Consensus 780 KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~~kg~~i~~~~~~~~~~~~~~~~~~ 859 (1286)
+-+++-+.=..++.+.+.-+.+.+...+.+|. -.-+.+..-+..+++++-+
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq----k~~ad~~~KI~~~k~r~~~------------------------- 387 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQ----KHHADAVAKIEEAKNRHVE------------------------- 387 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHH-------------------------
Q ss_pred hhhchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHhhcCCccccchhhhHHHHhhhhhhhhhh
Q psy12517 860 KEEHSKSYQLQTTLQRLTEVAAELKRASQLPPTPPTTEESQNRIRRAAFAAKKSVSTESDHTGESSSRALHRKGSLYRKS 939 (1286)
Q Consensus 860 ~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~Pd~eev~~rI~rLe~~m~~lVNM~Ai~Eyd~V~~rl~el~s~r~~~ 939 (1286)
|..=+-+++-..+=+|+... |-.|+.++++..+..|...+++= .++.+|++.|.+..+-
T Consensus 388 ---------Ls~RiLRv~ikqeilr~~G~--~L~~~EE~Lr~Kldtll~~ln~P---------nq~k~Rl~~L~e~~r~- 446 (508)
T KOG3091|consen 388 ---------LSHRILRVMIKQEILRKRGY--ALTPDEEELRAKLDTLLAQLNAP---------NQLKARLDELYEILRM- 446 (508)
T ss_pred ---------HHHHHHHHHHHHHHHhccCC--cCCccHHHHHHHHHHHHHHhcCh---------HHHHHHHHHHHHHHHh-
Q ss_pred hhhhhhhhHHHHHHHhhhcCCcchhhhhhH----hHHHHHHhhcCCCcccchhhhhhHHHHHHhhhhhHHHHH
Q psy12517 940 LSLEQTSQLAQEENIWKMTDDNDSSLTSFQ----SIDDAYENVKYTNYGRRETSMDRLEAEEKARKSDVAAVK 1008 (1286)
Q Consensus 940 Ls~Ere~IlErIeq~ek~kkd~~sfM~sfe----aInkIf~~LS~G~~geLe~~~~~l~~~e~~~k~~~a~~~ 1008 (1286)
....+.--+.||.+.+-+.--|+-|. +|+++-+-|+.. ++..+...-.+++.|+
T Consensus 447 ----q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d-----------~edi~~~l~E~~~~~~ 504 (508)
T KOG3091|consen 447 ----QNSQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLVNILKGD-----------QEDIKHQLIEDLEICR 504 (508)
T ss_pred ----hcchhccccceeechhhhHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHhhHHHHh
No 324
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.76 E-value=3e+02 Score=28.94 Aligned_cols=70 Identities=7% Similarity=0.191 Sum_probs=34.0
Q ss_pred HHhHHHHHhHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q psy12517 694 QRNAEKVTKLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVL 763 (1286)
Q Consensus 694 QklE~~rk~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL 763 (1286)
++++..-..|..+.++|..||+.+.... ...+......+.++-.+++.-.-+-...+..++-+|-+|.++
T Consensus 50 kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555554443 222333344455555555544444445555566666666554
No 325
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=35.63 E-value=3.4e+02 Score=26.03 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=12.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12517 306 LKTENEDLNDEKKSLSLRVRELETEA 331 (1286)
Q Consensus 306 LQqEIEDLe~Dkk~L~qrLreLEKKQ 331 (1286)
+.+.|+++..+.=.+.-+|-+|+...
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l 30 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERL 30 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33444444444444445555555543
No 326
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=35.62 E-value=53 Score=41.35 Aligned_cols=117 Identities=26% Similarity=0.409 Sum_probs=62.0
Q ss_pred ccCCCCCCCCccCCCcCCCCCCCCcccccccchhcccccCCcccccccCCccCCCCCCcCCCCCCCCCCCCCCCcccccc
Q psy12517 73 EHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRESEKKNEGRSWTSSTNLSSVSSSNDSQNSSRRPPPEDSSNEDDDYRS 152 (1286)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~wts~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (1286)
-+|.|+-|+..-..+||+++-+ +|.- ...++--.+||- +.|.|+- .+. .+
T Consensus 25 inge~~i~nh~e~eefn~dd~n--~wm~------ldd~nflntwtk--nvsdisf------------------~e~--ks 74 (782)
T PF07218_consen 25 INGERKIDNHREAEEFNVDDIN--SWMK------LDDANFLNTWTK--NVSDISF------------------LES--KS 74 (782)
T ss_pred ecccccccccccccccCcccch--hccc------ccHHHHHHHHhh--cccchhh------------------hhc--cc
Confidence 3566666777777888888754 4654 222333356764 2333222 000 00
Q ss_pred chheeecccCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCccchhhhhhhhhhccccccCCCCCC
Q psy12517 153 TKYVVRRRTSHLPATSTSSSNAEPSTSSNTTRTRSSASPRLKTPDKPSKADVDFILQVKDAKKTRRKENLETD 225 (1286)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~f~~~v~~~~~~~~~~~~~~~ 225 (1286)
. .-+|...-++|+.++-.+++.+...|.|+ +|+..--....|.+|++|..+-.-.++..|+.+-.++
T Consensus 75 ~-----k~~gn~~~~dts~~~~~s~~~~g~~~~~~-~~~~~~~~e~~s~~dw~f~a~~~~~k~~~pks~sg~s 141 (782)
T PF07218_consen 75 I-----KDDGNINLTDTSTNGDSSSKGSGRSRVRS-ASAAAILEEDDSNGDWNFMANQNEEKTSKPKSNSGES 141 (782)
T ss_pred c-----cccCccccccccccCCCCCCCCCcccccc-chhhhhhcccccccccchhcCccccCCCCCCCCCCCC
Confidence 0 01233344566556666666666656554 4444444556789999997654333555555544443
No 327
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.28 E-value=8e+02 Score=28.85 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHh
Q psy12517 784 QEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGR 831 (1286)
Q Consensus 784 RQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsk 831 (1286)
.-|++.+..++..+..+--+++++|. ..+.|+.++..+..-
T Consensus 158 ~~Le~kq~~l~~~~e~l~al~~e~e~-------~~~~L~~qk~e~~~l 198 (265)
T COG3883 158 KSLEEKQAALEDKLETLVALQNELET-------QLNSLNSQKAEKNAL 198 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 33444444444444444444444443 345555555555543
No 328
>KOG2129|consensus
Probab=35.24 E-value=1e+03 Score=29.92 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHH
Q psy12517 373 RYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKL 415 (1286)
Q Consensus 373 KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kL 415 (1286)
++||.++=+|...+--||-.-+-.|=|-+++++-.+|+|+-+|
T Consensus 182 eQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777776655555556677788888888888888776
No 329
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=35.19 E-value=4.4e+02 Score=32.82 Aligned_cols=103 Identities=10% Similarity=-0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-----HHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccccCCchhh
Q psy12517 786 IKKLEDTLVQERQE-----YEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAK 860 (1286)
Q Consensus 786 lEEaEEea~~~~ak-----yRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~~kg~~i~~~~~~~~~~~~~~~~~~~ 860 (1286)
+.++|.-+|....+ .+-.+.+++.|+ .+...+...+..+|++..- =+...
T Consensus 225 L~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae----~rl~~Ar~aL~~fRn~~gv---------------------lDP~~ 279 (434)
T PRK15178 225 LSFAEQHVNTVSARMQKERILWLENDVKSAQ----ENLGAARLELLKIQHIQKD---------------------IDPKE 279 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCC---------------------cChHH
Q ss_pred hhchhhhhHHHHHHHHHHHHHHHHhhcC-CCCCCCCcHHHHHHHHHHHHHHHhh
Q psy12517 861 EEHSKSYQLQTTLQRLTEVAAELKRASQ-LPPTPPTTEESQNRIRRAAFAAKKS 913 (1286)
Q Consensus 861 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~-~~~~~Pd~eev~~rI~rLe~~m~~l 913 (1286)
.-.+....|.++..+|.++..+|..+.. +.|.-|....++.+|..|+..+...
T Consensus 280 ~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~e 333 (434)
T PRK15178 280 TITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQ 333 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHH
No 330
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=34.62 E-value=5.2e+02 Score=34.19 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=10.9
Q ss_pred cccccCcCcHHHHHHHH
Q psy12517 284 METTTSKTTASELLKLQ 300 (1286)
Q Consensus 284 ~~t~~~~t~~sELekLQ 300 (1286)
+|-..+.|++.+-..+-
T Consensus 408 lDE~g~GtD~~eg~ala 424 (771)
T TIGR01069 408 FDELGAGTDPDEGSALA 424 (771)
T ss_pred ecCCCCCCCHHHHHHHH
Confidence 66666777766665553
No 331
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.56 E-value=4.7e+02 Score=34.56 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=7.2
Q ss_pred HHHHHhHHHhHHHHHHhh
Q psy12517 697 AEKVTKLERDKTSLEENL 714 (1286)
Q Consensus 697 E~~rk~LE~qvKELq~RL 714 (1286)
+.+=..|+.+.++++.+.
T Consensus 519 ~~li~~l~~~~~~~e~~~ 536 (782)
T PRK00409 519 NELIASLEELERELEQKA 536 (782)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 332
>KOG2751|consensus
Probab=34.50 E-value=9.2e+02 Score=30.21 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=36.0
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 396 SLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 396 eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
++.++++++.++-+.|-..|.+++..-.+|...+...+.+..++.
T Consensus 180 ~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~ 224 (447)
T KOG2751|consen 180 DLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLN 224 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888888888888888888888888888888887777777664
No 333
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=34.20 E-value=1.1e+03 Score=29.99 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=28.2
Q ss_pred hHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy12517 392 DEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKL 430 (1286)
Q Consensus 392 de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~ 430 (1286)
.+++.|+++|...+-....|+ .+.++...+.+++..+.
T Consensus 83 ~e~~~L~~eL~~~~~~l~~L~-~L~~i~~~l~~~~~al~ 120 (593)
T PF06248_consen 83 EELQELKRELEENEQLLEVLE-QLQEIDELLEEVEEALK 120 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 666777888888888777777 77888888877765443
No 334
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=33.88 E-value=7.1e+02 Score=27.79 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12517 421 RSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKL 480 (1286)
Q Consensus 421 k~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekl 480 (1286)
++.+++.++..+|.++..+. +.++.++.....||.-.+..+
T Consensus 150 K~~~~~~ev~~~e~~~~~a~-------------------~~fe~is~~~k~El~rF~~er 190 (224)
T cd07623 150 KLDQAQQEIKEWEAKVDRGQ-------------------KEFEEISKTIKKEIERFEKNR 190 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666655554 556667777777777665544
No 335
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=33.56 E-value=7.1e+02 Score=29.62 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 295 ELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRY 374 (1286)
Q Consensus 295 ELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KE 374 (1286)
-+..+-..+.+++.....+++-.-.|-+.-..|-=. ..-+...+.++...+..+...+.+...+++-++.....
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yq------vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~ 151 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQ------VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDS 151 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665555554443333332222221 11122234444445555566666667777777777777
Q ss_pred HHHHHHHHHhhh
Q psy12517 375 LEEEMDEMQDHF 386 (1286)
Q Consensus 375 LReEmEELrDs~ 386 (1286)
|+.+++++++++
T Consensus 152 L~~e~~~Lre~L 163 (302)
T PF09738_consen 152 LREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHH
Confidence 777777777777
No 336
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=33.52 E-value=1.6e+03 Score=31.79 Aligned_cols=88 Identities=8% Similarity=0.064 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 723 KTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYED 802 (1286)
Q Consensus 723 k~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~KqyKRQlEEaEEea~~~~akyRK 802 (1286)
..+.....++.+++.+++..+.+...+...+.....++..+.-.+..- ...++..+.++.+.++.+..++......+..
T Consensus 875 ~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~-~eel~a~L~e~r~rL~~l~~el~~~~~~~~~ 953 (1353)
T TIGR02680 875 TRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAM-VDEIRARLAETRAALASGGRELPRLAEALAT 953 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777777666666666666666666666555544321 3334444455556666666666666655555
Q ss_pred HHhhHhhhh
Q psy12517 803 LTNRYDILE 811 (1286)
Q Consensus 803 LQrELEeae 811 (1286)
+...+..+.
T Consensus 954 a~~~~~~a~ 962 (1353)
T TIGR02680 954 AEEARGRAE 962 (1353)
T ss_pred HHHHHHHHH
Confidence 555555555
No 337
>PRK09343 prefoldin subunit beta; Provisional
Probab=33.42 E-value=5.5e+02 Score=26.35 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 341 EREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQ 383 (1286)
Q Consensus 341 d~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELr 383 (1286)
+.....+..++..++..+..+....+.++..+.+++..+.++.
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444443
No 338
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.19 E-value=2.2e+02 Score=33.69 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
+..|.+++...-.|+.+..++.....+++.+....+.++.+..
T Consensus 241 ~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~ 283 (344)
T PF12777_consen 241 QAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAE 283 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Confidence 5555555555556666666666666666666655555555554
No 339
>KOG2391|consensus
Probab=33.13 E-value=2.5e+02 Score=33.88 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKS 418 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKa 418 (1286)
..+++.+++||=||--+.+++
T Consensus 259 Eqq~~~L~~niDIL~~k~~ea 279 (365)
T KOG2391|consen 259 EQQLQSLQKNIDILKSKVREA 279 (365)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 677889999999999888883
No 340
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.80 E-value=2.6e+02 Score=30.22 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy12517 775 ITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYD 808 (1286)
Q Consensus 775 lqEl~KqyKRQlEEaEEea~~~~akyRKLQrELE 808 (1286)
+.+-++.++.+++.++.++.....+...++.|||
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3444456666677777777777777777776664
No 341
>KOG1962|consensus
Probab=32.64 E-value=4.1e+02 Score=30.31 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Q psy12517 785 EIKKLEDTLVQERQEYEDLTNRY 807 (1286)
Q Consensus 785 QlEEaEEea~~~~akyRKLQrEL 807 (1286)
|.++.-.+-.+...+|.+||.++
T Consensus 187 q~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 187 QSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHcccHHHHHHHHHHHHHHHH
Confidence 34444444444444555555444
No 342
>PRK14127 cell division protein GpsB; Provisional
Probab=32.62 E-value=2.1e+02 Score=29.34 Aligned_cols=9 Identities=44% Similarity=0.755 Sum_probs=5.2
Q ss_pred HHHHHHHHH
Q psy12517 451 RIQALEKEL 459 (1286)
Q Consensus 451 ~I~eLEreL 459 (1286)
+|..||+.+
T Consensus 93 Rls~LEk~V 101 (109)
T PRK14127 93 RLSNLEKHV 101 (109)
T ss_pred HHHHHHHHH
Confidence 446666654
No 343
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=32.23 E-value=1.1e+03 Score=29.60 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHhh
Q psy12517 892 TPPTTEESQNRIRRAAFAAKKS 913 (1286)
Q Consensus 892 ~~Pd~eev~~rI~rLe~~m~~l 913 (1286)
.+|+...+..|-..+...+.+.
T Consensus 464 Gv~s~~~L~~rf~~v~~~~r~~ 485 (582)
T PF09731_consen 464 GVPSEAQLRNRFERVAPEVRRA 485 (582)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666554
No 344
>KOG4005|consensus
Probab=32.06 E-value=3.6e+02 Score=31.28 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=35.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 333 AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 333 kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
++....++++.+.+|..+-..+...++.|+..++.|=-++.++..+|+.++..+
T Consensus 88 KKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 88 KKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 444555666667777666666666667777777776666666666666665555
No 345
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=31.88 E-value=5.1e+02 Score=25.51 Aligned_cols=17 Identities=12% Similarity=0.280 Sum_probs=9.7
Q ss_pred HhHHHHHHHHHHHHHHH
Q psy12517 461 LANETAEKLQKDLKEAT 477 (1286)
Q Consensus 461 ~akEvs~rLq~eLeelE 477 (1286)
...+|+.+|...++.+.
T Consensus 68 ~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 68 ANREVSRRLDSAIETIR 84 (89)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34466666666555554
No 346
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=31.53 E-value=3.4e+02 Score=26.36 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 779 KTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 779 ~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
...+|-+-++.|..++...+....++..+-+++..|.-.+..-|.++..|+..|..
T Consensus 20 ~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 20 ANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677788999999999999999999999999999999999999999999998854
No 347
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=31.30 E-value=7.9e+02 Score=27.54 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12517 722 TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKES 758 (1286)
Q Consensus 722 Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ER 758 (1286)
+..|..++..+..|.+.+.. ++...+.+.+...++
T Consensus 191 ~~~~~~l~~~l~~Lq~~ln~--~R~~eae~~~~~a~~ 225 (240)
T PF12795_consen 191 KARIQRLQQQLQALQNLLNQ--KRRQEAEQAVEEAEQ 225 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45677777777777777764 334444444444443
No 348
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.91 E-value=7.6e+02 Score=27.22 Aligned_cols=100 Identities=26% Similarity=0.358 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 353 AAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEA 432 (1286)
Q Consensus 353 sLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~ 432 (1286)
.....++.+..+++.++..+..+...++...... ++. ++ ...+-.++.+++..+.++..++...
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-~~~-~e--------------R~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-EES-EE--------------REELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc-HH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666664444 111 11 1223334444444444444444421
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12517 433 EKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKL 480 (1286)
Q Consensus 433 E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekl 480 (1286)
+-.|...|..+.+++..+.+-.-|----+..+..=+
T Consensus 130 ------------~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 130 ------------SENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred ------------HhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 123446778888888777776666665565554433
No 349
>COG1258 Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=30.87 E-value=19 Score=43.32 Aligned_cols=31 Identities=42% Similarity=0.606 Sum_probs=21.6
Q ss_pred CCCCCCcchhhhh--------------h--hhhhhhcCCCCCCCCCCCCccccC
Q psy12517 19 HPQVRWPTRCKRC--------------F--RDYKEHGNRNRDNDLRKDDFTVSS 56 (1286)
Q Consensus 19 ~~~~~~~~~~~~~--------------~--~~~~~h~~~~~~~~~~~~d~~~s~ 56 (1286)
-||.+||.+-+.| | .||+=||+++ +|+.+..
T Consensus 178 ipQT~wp~~~~~~~sve~~i~~~~~~~f~g~~~~fhgAGR-------EDvDvRM 224 (398)
T COG1258 178 IPQTRWPCRELYPESVEELIKQPIKEAFGGLDAKFHGAGR-------EDVDVRM 224 (398)
T ss_pred CCcccCcCcccccccHHHHHHHHHHHhccCceeEEEccCC-------Cccceee
Confidence 4999999852122 2 4788899999 6666653
No 350
>KOG4403|consensus
Probab=30.81 E-value=1.2e+03 Score=29.44 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12517 293 ASELLKLQQRVNELKTENEDLNDEKKSLSLRVR 325 (1286)
Q Consensus 293 ~sELekLQKklnELQqEIEDLe~Dkk~L~qrLr 325 (1286)
.-.+..+|+.++..+.+.+.+.+++-.++..+.
T Consensus 258 Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ 290 (575)
T KOG4403|consen 258 EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD 290 (575)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence 345666666666666666666666665555554
No 351
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=30.79 E-value=8.1e+02 Score=27.50 Aligned_cols=40 Identities=25% Similarity=0.165 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhHHHHhhhh
Q psy12517 727 DLQTKCSTLEKSLTAEQKQKAL--------KEKELKTKESEINVLKNQ 766 (1286)
Q Consensus 727 kLEaRI~eLEeeLe~EqRek~e--------a~K~~RK~ERrIKEL~~Q 766 (1286)
..+.+|..|+.++..-..++.. .......+|+.+.++...
T Consensus 82 ~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~ 129 (206)
T PF14988_consen 82 QQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKIL 129 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3477788888888777776655 455566677776555544
No 352
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.79 E-value=6.6e+02 Score=26.48 Aligned_cols=63 Identities=17% Similarity=0.333 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 313 LNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDE 381 (1286)
Q Consensus 313 Le~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEE 381 (1286)
+..-++++.++|..+..++. +...-.+.++.++..+...++.+...++.+...+..|...|..
T Consensus 59 l~~tKkhLsqRId~vd~klD------e~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLD------EQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666666666542 1122233333444444444444444444444444444444433
No 353
>KOG1962|consensus
Probab=30.66 E-value=2.5e+02 Score=31.92 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 349 TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
+++..+++....+..+.+++.+|.+.|-++...+++++
T Consensus 172 ~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 172 KKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 55556666666666666666677777766666666665
No 354
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.52 E-value=8.7e+02 Score=27.81 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEA 427 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~ 427 (1286)
.++.+.|....+.+.-+||-+..-+..+|+
T Consensus 38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~ 67 (230)
T PF10146_consen 38 RKEMEELLQERMAHVEELRQINQDINTLEN 67 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555555443
No 355
>KOG4603|consensus
Probab=30.21 E-value=3.4e+02 Score=30.16 Aligned_cols=70 Identities=14% Similarity=0.314 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12517 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQ 424 (1286)
Q Consensus 349 TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EE 424 (1286)
..+..+...+..+.+.+.++..+..-+.+||..|.+.+ -.-+|+.++..+-|.|+-..-+|..+....-.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L------t~eemQe~i~~L~kev~~~~erl~~~k~g~~~ 148 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL------TTEEMQEEIQELKKEVAGYRERLKNIKAGTNH 148 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45667777788888888888899999999999999888 34456999999999999999988888766543
No 356
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.90 E-value=5e+02 Score=24.79 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 296 LLKLQQRVNELKTENEDLNDEKKSLSLRVREL 327 (1286)
Q Consensus 296 LekLQKklnELQqEIEDLe~Dkk~L~qrLreL 327 (1286)
+..+...+..+...|..+...+..+..-+..|
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333333
No 357
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=29.89 E-value=1e+03 Score=28.40 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=22.5
Q ss_pred HHhhhhhhhHHHHHHHhHHHHhhhhhcC
Q psy12517 1030 LRFKRERDTFKHMLEGAQKTIADLKASH 1057 (1286)
Q Consensus 1030 ~r~kr~rd~~k~~le~aq~~~~~~k~~~ 1057 (1286)
....++|..+-+.|+.|=..-.+++++-
T Consensus 298 ~~~~~~re~~lq~L~~ay~~y~el~~nl 325 (353)
T cd09236 298 DPATKERERALQSLDLAYFKYKEIVSNL 325 (353)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999988888888774
No 358
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=29.79 E-value=2.1e+02 Score=28.84 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh----hhhHHHHHHHHHHHHHH
Q psy12517 685 ELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM----TKTISDLQTKCSTLEKS 738 (1286)
Q Consensus 685 EL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a----Kk~I~kLEaRI~eLEee 738 (1286)
+|..++.....++..+..++..+-+|.+.|.+-=..| ++.-..++.|+..|+.+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~ 59 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQ 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888899999999999999999995543333 33344444444444433
No 359
>KOG4809|consensus
Probab=29.72 E-value=1.3e+03 Score=29.76 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Q psy12517 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF------REDQADEYSSLKKELEQTAKNCRILSFKLRKSERRS 422 (1286)
Q Consensus 349 TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~------rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~ 422 (1286)
..+|-+.....+..-.+|..++.+..-.+-|..|-..+ +..+-.+|+..+..-|+..-..+--+ |.+
T Consensus 243 ~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~e-------r~I 315 (654)
T KOG4809|consen 243 EEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVE-------RII 315 (654)
T ss_pred HHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHH-------HHH
Confidence 33444444444444444444444444444443333333 34455566666666666555444432 333
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchHH
Q psy12517 423 EQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVET 502 (1286)
Q Consensus 423 EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~~~~a~~~ 502 (1286)
+.|---... +...++ +.|-+++++++-.+|.--.||.++-+.++.+-.+..+- +.....
T Consensus 316 erLkeqr~r--derE~~----------EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkeha---------ssLas~ 374 (654)
T KOG4809|consen 316 ERLKEQRER--DERERL----------EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHA---------SSLASA 374 (654)
T ss_pred HHhcchhhh--hHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Confidence 333211111 111122 35778888888888888888888877777664332111 122344
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy12517 503 AEKLQKDLKEATDKLERAN 521 (1286)
Q Consensus 503 kkKLE~dL~ElE~kle~an 521 (1286)
-.++...|+.++|.|++.+
T Consensus 375 glk~ds~Lk~leIalEqkk 393 (654)
T KOG4809|consen 375 GLKRDSKLKSLEIALEQKK 393 (654)
T ss_pred hhhhhhhhhHHHHHHHHHH
Confidence 4566777777777777665
No 360
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=29.70 E-value=2.1e+02 Score=33.16 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 346 ALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 346 ELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
.++.++.++...+..+...++.++.++.+...+++.|....
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~ 217 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSS 217 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 56677777788888888888888888888888888885544
No 361
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=29.66 E-value=1.5e+02 Score=35.63 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQ 424 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EE 424 (1286)
...+....|....|..+++.++.++-.
T Consensus 164 ~~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 164 EQAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 333444555566666777777777766
No 362
>KOG0241|consensus
Probab=29.46 E-value=2.2e+02 Score=38.31 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=53.3
Q ss_pred hhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHH----hHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHH
Q psy12517 662 ERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLER----DKTSLEENLKSKETQMTKTISDLQTKCSTLEK 737 (1286)
Q Consensus 662 ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~----qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEe 737 (1286)
+|+++.. ++.-|++...++.--||++|=+ ..+.+|+. ++.+|+.+|++.|.-++..-..+|.||+.+|.
T Consensus 346 drAkrIv-N~avvNedpnarvirElReEve------~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~ 418 (1714)
T KOG0241|consen 346 DRAKRIV-NHAVVNEDPNARVIRELREEVE------KLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEE 418 (1714)
T ss_pred HHHHHhh-ccccccCCchHHHHHHHHHHHH------HHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4776653 4667888888887777766533 33444443 68899999999999888778889999999996
Q ss_pred HHH
Q psy12517 738 SLT 740 (1286)
Q Consensus 738 eLe 740 (1286)
.-.
T Consensus 419 in~ 421 (1714)
T KOG0241|consen 419 INQ 421 (1714)
T ss_pred HHH
Confidence 544
No 363
>PF14282 FlxA: FlxA-like protein
Probab=29.37 E-value=1.9e+02 Score=28.97 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=32.0
Q ss_pred HhHHHhHHHHHHhhHHHhhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 701 TKLERDKTSLEENLKSKETQM-------TKTISDLQTKCSTLEKSLTAEQKQKAL 748 (1286)
Q Consensus 701 k~LE~qvKELq~RL~E~Es~a-------Kk~I~kLEaRI~eLEeeLe~EqRek~e 748 (1286)
..|+.+++.|+..|.++.... +..+..|.+.|..|+.+|..-+.+...
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777776621 456777788888888777655554443
No 364
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=29.25 E-value=5.7e+02 Score=25.29 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 356 GLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKK 435 (1286)
Q Consensus 356 ~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k 435 (1286)
+.++.......=++..|........+|.+.. ..+ .+.+++++.-.-.|+--+. ++.+.|+....+|..
T Consensus 14 ~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~-----~~l---~~~~~~l~~k~~~l~~~l~----~Id~Ie~~V~~LE~~ 81 (99)
T PF10046_consen 14 SELEATNEDYNLLENMNKATSLKYKKMKDIA-----AGL---EKNLEDLNQKYEELQPYLQ----QIDQIEEQVTELEQT 81 (99)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3344444555555556666666655555555 333 5555555544433333332 333344344444444
Q ss_pred HHhh
Q psy12517 436 CREV 439 (1286)
Q Consensus 436 ~lrl 439 (1286)
+-.|
T Consensus 82 v~~L 85 (99)
T PF10046_consen 82 VYEL 85 (99)
T ss_pred HHHH
Confidence 4444
No 365
>KOG0288|consensus
Probab=29.11 E-value=1.2e+03 Score=29.12 Aligned_cols=10 Identities=30% Similarity=0.341 Sum_probs=5.9
Q ss_pred ccchhhhhcc
Q psy12517 1086 FGKLKQLTRS 1095 (1286)
Q Consensus 1086 ~~kl~~~~~~ 1095 (1286)
-|++++|+-+
T Consensus 341 gg~vtSl~ls 350 (459)
T KOG0288|consen 341 GGRVTSLDLS 350 (459)
T ss_pred CcceeeEeec
Confidence 3667766544
No 366
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=28.72 E-value=6.7e+02 Score=25.91 Aligned_cols=112 Identities=19% Similarity=0.207 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHH
Q psy12517 340 AEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSE 419 (1286)
Q Consensus 340 ld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKae 419 (1286)
+......+......+....-.+...++.++.++..+-.++..+..+| .+. .+.++.+. ..--..+=+..++
T Consensus 32 ~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~-----~~k---~~~~~~l~-~~~s~~~l~~~L~ 102 (150)
T PF07200_consen 32 LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEY-----QEK---EQQQDELS-SNYSPDALLARLQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHH-ccCCHHHHHHHHH
Confidence 33334444433444444444444555555555555555555555555 222 44555552 2333444455555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy12517 420 RRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKD 472 (1286)
Q Consensus 420 rk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~e 472 (1286)
....++|.+-..+-..++ .|-.+ ++.=|+.+.+.|+.-|..
T Consensus 103 ~~~~e~eeeSe~lae~fl------~g~~d------~~~Fl~~f~~~R~~yH~R 143 (150)
T PF07200_consen 103 AAASEAEEESEELAEEFL------DGEID------VDDFLKQFKEKRKLYHLR 143 (150)
T ss_dssp HHHHHHHHHHHHHC-S-S------SSHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------CCCCC------HHHHHHHHHHHHHHHHHH
Confidence 555555544333322221 23222 333367777777776653
No 367
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=28.43 E-value=1.3e+03 Score=29.22 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHH
Q psy12517 338 NAAEREAEALRTKLAAAEGLC-EELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLR 416 (1286)
Q Consensus 338 eEld~sieELRTKLlsLE~al-EEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLr 416 (1286)
..+..+..++..-+..+...- +.......+++.+....+.+++...... ...|.+.+.. |..+..
T Consensus 25 ~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~-----------e~rL~qrE~r---L~qRee 90 (514)
T TIGR03319 25 KKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKER-----------RNELQRLERR---LLQREE 90 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH---HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy12517 417 KSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEA 476 (1286)
Q Consensus 417 Kaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeel 476 (1286)
.++++.+.++.....++.+...|. .+-.+|+...+...+........|+.+
T Consensus 91 ~Lekr~e~Lekre~~Le~ke~~L~---------~re~eLee~~~e~~~~~~~~~~~le~~ 141 (514)
T TIGR03319 91 TLDRKMESLDKKEENLEKKEKELS---------NKEKNLDEKEEELEELIAEQREELERI 141 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 368
>PLN02939 transferase, transferring glycosyl groups
Probab=28.33 E-value=1.7e+03 Score=30.63 Aligned_cols=115 Identities=21% Similarity=0.277 Sum_probs=73.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhh--h--hHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHH
Q psy12517 306 LKTENEDLNDEKKSLSLRVRELETEAAAF--K--KSNAAEREAEALRTKLAAAEGL---CE-ELMDENEEMKKELRYLEE 377 (1286)
Q Consensus 306 LQqEIEDLe~Dkk~L~qrLreLEKKQKkf--d--k~eEld~sieELRTKLlsLE~a---lE-EL~EeLEELKrE~KELRe 377 (1286)
+..+.++++.+++.+.-++++-+.+.+.- . ..+-++....-+|.++..-... |+ -+..++..++.||--|+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (977)
T PLN02939 161 ILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKD 240 (977)
T ss_pred HHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHH
Confidence 33456666666777777777666655511 1 1111222233343322211111 11 256788899999999999
Q ss_pred HHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy12517 378 EMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQL 425 (1286)
Q Consensus 378 EmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EEl 425 (1286)
.+.-++..+ +++.+-..-+--++|.|-.|+.-|++++.++-.+
T Consensus 241 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (977)
T PLN02939 241 DIQFLKAEL-----IEVAETEERVFKLEKERSLLDASLRELESKFIVA 283 (977)
T ss_pred HHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999988 8887778888888898888888888888777543
No 369
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=28.33 E-value=8.1e+02 Score=26.73 Aligned_cols=99 Identities=23% Similarity=0.232 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhHHHHHhHHHHHHHHHhhHHHHHH
Q psy12517 339 AAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQD---HFREDQADEYSSLKKELEQTAKNCRILSFKL 415 (1286)
Q Consensus 339 Eld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrD---s~rEe~~de~~eL~KeLheleKncRiLq~kL 415 (1286)
.+...+..+|..+..+...|.+.....+.....+.-....|++|.. .| -+++|..+.+-+..+.--|+.++.++
T Consensus 19 rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f---~i~~~~~~~~~r~~l~~~~~~~e~~~ 95 (158)
T PF09486_consen 19 RLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPF---SIDEYLALRRYRDVLEERVRAAEAEL 95 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888899999999999999999999999999999987 55 46888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 416 RKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 416 rKaerk~EElE~E~~~~E~k~lrle 440 (1286)
.-+...+...++++...-.++.++.
T Consensus 96 a~l~~~l~~~~~~ia~~~raIarn~ 120 (158)
T PF09486_consen 96 AALRQALRAAEDEIAATRRAIARND 120 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888887766666654
No 370
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=28.29 E-value=5.9e+02 Score=25.13 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 349 TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
+++..+--.+.=++.++++++..+..+..+.+.+..+.
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r 48 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR 48 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444444444555666666666666666665555554
No 371
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=28.08 E-value=50 Score=33.14 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy12517 359 EELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLE 426 (1286)
Q Consensus 359 EEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE 426 (1286)
.+-......++..+..+..|+++|..+++++== +=|....+.+-.++.+...++.++.+.+
T Consensus 4 ~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN-------~MVa~ar~e~~~~e~k~~~le~~l~e~~ 64 (100)
T PF06428_consen 4 EEERERREEAEQEKEQIESELEELTASLFEEAN-------KMVADARRERAALEEKNEQLEKQLKEKE 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCTTHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677888888899999999999844332 2244444445555555555555555543
No 372
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=27.96 E-value=7.3e+02 Score=26.07 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAA 332 (1286)
Q Consensus 294 sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQK 332 (1286)
.++..+=..+..|++++..+...+..+...++..++-..
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~ 44 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALE 44 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667777777777777777777777666554
No 373
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.82 E-value=9e+02 Score=27.08 Aligned_cols=77 Identities=25% Similarity=0.261 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 352 AAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLE 431 (1286)
Q Consensus 352 lsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~ 431 (1286)
..++.....+...+..++++++.+--.....+... |..|..++..+.-+=.+.-+++.+..+|+++...
T Consensus 139 ~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~-----------~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~ 207 (221)
T PF05700_consen 139 EQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEA-----------GEELRYLEQRWKELVSKNLEIEVACEELEQEIEQ 207 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555566666666666655555555555 7777788888888888887888887777776666
Q ss_pred HHHHHHhh
Q psy12517 432 AEKKCREV 439 (1286)
Q Consensus 432 ~E~k~lrl 439 (1286)
+..+...+
T Consensus 208 l~~~~~~~ 215 (221)
T PF05700_consen 208 LKRKAAEL 215 (221)
T ss_pred HHHHHHHH
Confidence 55444443
No 374
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.68 E-value=5e+02 Score=25.42 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 351 LAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDH 385 (1286)
Q Consensus 351 LlsLE~alEEL~EeLEELKrE~KELReEmEELrDs 385 (1286)
+..+-..+-.+.-+++.++.+...+..+|..+...
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 34444444445555555555555555555555444
No 375
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=27.53 E-value=1.3e+03 Score=28.82 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q psy12517 450 ERIQALEKELKLANETAEKLQK 471 (1286)
Q Consensus 450 ~~I~eLEreLk~akEvs~rLq~ 471 (1286)
..+.+|..||+.+.++=..+..
T Consensus 299 dL~~DL~eDl~k~~etf~lveq 320 (424)
T PF03915_consen 299 DLLSDLKEDLKKASETFALVEQ 320 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888899888776555444
No 376
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.08 E-value=5e+02 Score=32.67 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 351 LAAAEGLCEELMDENEEMKKELRYLEEEMDEM 382 (1286)
Q Consensus 351 LlsLE~alEEL~EeLEELKrE~KELReEmEEL 382 (1286)
+..++..++.+..+++.++.+|+.|+..-..+
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~i 99 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSI 99 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33344444444455555555555554443333
No 377
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.07 E-value=3.4e+02 Score=31.27 Aligned_cols=31 Identities=42% Similarity=0.522 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy12517 469 LQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATD 515 (1286)
Q Consensus 469 Lq~eLeelEekle~e~~~~~~~l~~~~~~~a~~~kkKLE~dL~ElE~ 515 (1286)
|+.+|..++++++ .....+.+||.||-.+..
T Consensus 4 lq~~l~~l~~~~~----------------~~~~L~~kLE~DL~~~~~ 34 (248)
T PF08172_consen 4 LQKELSELEAKLE----------------EQKELNAKLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhc
Confidence 5566666666664 334566777777766653
No 378
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.68 E-value=1.7e+03 Score=29.98 Aligned_cols=152 Identities=13% Similarity=0.091 Sum_probs=65.9
Q ss_pred hHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHhhhhccc-chHHHHHHH
Q psy12517 702 KLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKAL--KEKELKTKESEINVLKNQSSD-NVTKQITEL 778 (1286)
Q Consensus 702 ~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~e--a~K~~RK~ERrIKEL~~Q~ee-kn~~rlqEl 778 (1286)
.|..++|.+.++.+-... -|..-.+.+..|++++++-+.=-.- +.=.+-.+.|-|.||..-.+. .|+. .-
T Consensus 620 TL~~~~k~~~~~~~~~~~----~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~---~~ 692 (1104)
T COG4913 620 TLRETVKAMLSREDFYMI----KIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTHTQ---SD 692 (1104)
T ss_pred HHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCCh---hH
Confidence 344455555555332221 1555556666666666654431111 111222233333333333322 1110 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccccCCch
Q psy12517 779 KTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSV 858 (1286)
Q Consensus 779 ~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~~kg~~i~~~~~~~~~~~~~~~~~ 858 (1286)
....++++..++........+|..--++.-.+. -...+|++|-+.+.++=..-=. .-|.. .-..-.|-+
T Consensus 693 ~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k-~~lkrA~~~~~k~~si~~~~~t----~~~q~------~~~a~f~q~ 761 (1104)
T COG4913 693 IAIAKAALDAAQTRQKVLERQYQQEVTECAGLK-KDLKRAAMLSRKVHSIAKQGMT----GALQA------LGAAHFPQV 761 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhh----HHHHH------HHHhhhhhh
Confidence 144566677777766666666655444444433 1123444444444433211000 00000 222334566
Q ss_pred hhhhchhhhhHHH
Q psy12517 859 AKEEHSKSYQLQT 871 (1286)
Q Consensus 859 ~~~~~~~s~~~~~ 871 (1286)
+-+.|--+-.++.
T Consensus 762 a~~~h~~~vd~~~ 774 (1104)
T COG4913 762 APEQHDDIVDIER 774 (1104)
T ss_pred ChHhhhhhhhHHH
Confidence 7777776666655
No 379
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=26.50 E-value=59 Score=28.81 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.2
Q ss_pred hhhhhhhhHHHHHHHhHHHHhhh
Q psy12517 1012 DKRATALSDELKAIQGQVLRFKR 1034 (1286)
Q Consensus 1012 ~~~~~~~~~e~~~~~~~~~r~kr 1034 (1286)
.+||++|.+.|+.+|+-+++||+
T Consensus 5 rqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 5 RQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999998775
No 380
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=26.30 E-value=9.2e+02 Score=26.69 Aligned_cols=161 Identities=20% Similarity=0.293 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHH---------HHhhhccc-cccCcCcHHHHHHHHHHHHHHHHHhHHHH
Q psy12517 245 DNEYSDQIDLLRHELDNMKAKCEKLEREKSDIL---------LRRLASME-TTTSKTTASELLKLQQRVNELKTENEDLN 314 (1286)
Q Consensus 245 ~~~~~~~i~~lr~el~~~k~rce~~e~eks~il---------lrrl~~~~-t~~~~t~~sELekLQKklnELQqEIEDLe 314 (1286)
|.+.+++|..|-..|..|-..++++-+...++. +-.|++.+ +.+....=+.+......+..+... -...
T Consensus 6 F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~-~a~~ 84 (216)
T cd07627 6 FIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLER-QALQ 84 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_pred HHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Q psy12517 315 DEKK---SLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEEL-------MDENEEMKKELRYLEEEMDEMQD 384 (1286)
Q Consensus 315 ~Dkk---~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL-------~EeLEELKrE~KELReEmEELrD 384 (1286)
..+. .+...++.+..=...|.....+-.....+...|.+.....+.+ .+.+..++.++..+.........
T Consensus 85 e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~ 164 (216)
T cd07627 85 DVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKK 164 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhHHHHHhHHHHHHHHHhhH
Q psy12517 385 HFREDQADEYSSLKKELEQTAKNCRI 410 (1286)
Q Consensus 385 s~rEe~~de~~eL~KeLheleKncRi 410 (1286)
.| +.+.+. +.++|..-++....
T Consensus 165 ~~--e~is~~--~k~El~rF~~~r~~ 186 (216)
T cd07627 165 EF--EEVSEL--IKSELERFERERVE 186 (216)
T ss_pred HH--HHHHHH--HHHHHHHHHHHHHH
No 381
>PRK00106 hypothetical protein; Provisional
Probab=26.04 E-value=1.5e+03 Score=29.09 Aligned_cols=130 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHH
Q psy12517 322 LRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKEL 401 (1286)
Q Consensus 322 qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeL 401 (1286)
..+..|..+......+.++....+.+. -.+...+-+.......++++++...+.+++.....- +..|
T Consensus 33 ~~~~~~~A~~~A~~IleeAe~eAe~I~--keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eE-----------r~rL 99 (535)
T PRK00106 33 AELTLLNAEQEAVNLRGKAERDAEHIK--KTAKRESKALKKELLLEAKEEARKYREEIEQEFKSE-----------RQEL 99 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy12517 402 EQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEA 476 (1286)
Q Consensus 402 heleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeel 476 (1286)
.+-+.. |..+-..++++.+.|+.....++.+...+. .+-.+|+...+..++.......+|+.+
T Consensus 100 ~qrE~r---L~qREE~LekRee~LekrE~eLe~kekeLe---------~reeeLee~~~~~~~~~~~~~~~Le~~ 162 (535)
T PRK00106 100 KQIESR---LTERATSLDRKDENLSSKEKTLESKEQSLT---------DKSKHIDEREEQVEKLEEQKKAELERV 162 (535)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 382
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.91 E-value=1.1e+03 Score=27.64 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 299 LQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEE 378 (1286)
Q Consensus 299 LQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReE 378 (1286)
++..+..+.+++......+..+.....+|+.|.++. ..|+ +..+.+|.++.+. .-.+=.|.+.+..|
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekk--k~EL----ER~qKRL~sLq~v-------RPAfmdEyEklE~E 233 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKK--KQEL----ERNQKRLQSLQSV-------RPAFMDEYEKLEEE 233 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH----HHHHHHHHHHHhc-------ChHHHHHHHHHHHH
Confidence 444555666666666666666666666766664322 2233 3333334444444 33344444445555
Q ss_pred HHHHHhhh
Q psy12517 379 MDEMQDHF 386 (1286)
Q Consensus 379 mEELrDs~ 386 (1286)
+..+.+.+
T Consensus 234 L~~lY~~Y 241 (267)
T PF10234_consen 234 LQKLYEIY 241 (267)
T ss_pred HHHHHHHH
Confidence 55555444
No 383
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.77 E-value=1.3e+03 Score=28.26 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=19.4
Q ss_pred HHHHHHHHH-HHhHHHHHHHHHHHHHHH
Q psy12517 451 RIQALEKEL-KLANETAEKLQKDLKEAT 477 (1286)
Q Consensus 451 ~I~eLEreL-k~akEvs~rLq~eLeelE 477 (1286)
.|..||..+ ...=|++--||.+.+..|
T Consensus 202 yI~~LEsKVqDLm~EirnLLQle~~~~e 229 (401)
T PF06785_consen 202 YIGKLESKVQDLMYEIRNLLQLESDMKE 229 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 457888887 445588888888876554
No 384
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=25.75 E-value=6.2e+02 Score=24.78 Aligned_cols=71 Identities=25% Similarity=0.361 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 361 LMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKN---CRILSFKLRKSERRSEQLEAEKLEAEKKCR 437 (1286)
Q Consensus 361 L~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKn---cRiLq~kLrKaerk~EElE~E~~~~E~k~l 437 (1286)
..+++-.+-.+.+.+..+++.++... -.+ .+.+-++-++ +-.|-.+...+..++..+|.++..++..+.
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~r-----N~~---sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAER-----NEL---SKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-----hHH---HHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444 333 4444444432 334444445555555555555554444444
Q ss_pred hh
Q psy12517 438 EV 439 (1286)
Q Consensus 438 rl 439 (1286)
.+
T Consensus 99 ~~ 100 (108)
T PF02403_consen 99 EL 100 (108)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 385
>KOG4797|consensus
Probab=25.64 E-value=90 Score=32.07 Aligned_cols=38 Identities=32% Similarity=0.587 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc
Q psy12517 247 EYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMET 286 (1286)
Q Consensus 247 ~~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t 286 (1286)
-..+|++-||.++..+.+|.-.+|+|.+ |||++++-|+
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~--lLk~~~spe~ 101 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENS--LLKTLASPEQ 101 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhCCHHH
Confidence 3678999999999999999999999865 8999887554
No 386
>PLN02939 transferase, transferring glycosyl groups
Probab=25.58 E-value=1.9e+03 Score=30.23 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHH---HHHhHHHHHhHHHhHHHHHHhhHHHhhhh-h---hhHHHHHHHHHHHHHHHHHHHHH
Q psy12517 678 ELNQLREELTQLKKE---AQRNAEKVTKLERDKTSLEENLKSKETQM-T---KTISDLQTKCSTLEKSLTAEQKQ 745 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~---~QklE~~rk~LE~qvKELq~RL~E~Es~a-K---k~I~kLEaRI~eLEeeLe~EqRe 745 (1286)
++.-|.++|..-.++ +-.+|+.+.-|+..+++|+.|+..+-..+ | -++-.|=.||..|+.=|+.-...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (977)
T PLN02939 241 DIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQ 315 (977)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544443 66689999999999999999997776655 2 22334566777777777654443
No 387
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.98 E-value=4.3e+02 Score=32.35 Aligned_cols=123 Identities=23% Similarity=0.338 Sum_probs=74.3
Q ss_pred Cccchhhhhhhhhhccc--------cccCCCCCCCc--------cccCcccccccccccc-CChhhHHHHHHHHHHHHHH
Q psy12517 200 SKADVDFILQVKDAKKT--------RRKENLETDTE--------SLAGTETTDTTETTLV-NDNEYSDQIDLLRHELDNM 262 (1286)
Q Consensus 200 ~~~dv~f~~~v~~~~~~--------~~~~~~~~~~~--------~~~~~~~t~~t~~t~v-~~~~~~~~i~~lr~el~~~ 262 (1286)
..+||.+--.+.+++.. .+++.+-+|.+ ..-|++..+.|...+- +..++..++..|+.++..+
T Consensus 267 a~~~I~I~~~i~~s~v~a~~~i~v~~~~g~IiGG~i~a~~~i~a~~lGs~~~~~T~i~vg~~~~~l~~~~~~l~~~~~~~ 346 (451)
T PF03961_consen 267 AGGDIYIENYILNSKVKAGGSIIVNGGKGRIIGGEIKAGNGIEAKSLGSEAGTKTEIEVGVDRPELKEKLEELEEELEEL 346 (451)
T ss_pred eCCcEEechhhhhhheecCCeEEEeCCCCEEECcEEEEcccEEEEeecccccccEEEEEecCcHHHHHHHHHHHHHHHHH
Confidence 56667766666666554 23455555543 1124444444444443 5589999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHhhhcccc--ccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 263 KAKCEKLEREKSDILLRRLASMET--TTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVREL 327 (1286)
Q Consensus 263 k~rce~~e~eks~illrrl~~~~t--~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreL 327 (1286)
+.++++++.. |..+..+.. .........+.++.+.+..+...+..+...+..+...+..+
T Consensus 347 ~~~l~~l~~~-----l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 347 KEELEKLKKN-----LKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHH-----HHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998888877 333322111 11122345566666666777777776666666666555544
No 388
>COG5293 Predicted ATPase [General function prediction only]
Probab=24.97 E-value=1.4e+03 Score=29.10 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 248 YSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVREL 327 (1286)
Q Consensus 248 ~~~~i~~lr~el~~~k~rce~~e~eks~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreL 327 (1286)
++++|..++..|..+.+ ++.++--||..++.-..|.+.--+|+-++.. +-++..++..++-++..|
T Consensus 340 l~~ei~~i~~dLk~~n~-------~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee-------~~~~~~elae~~~rie~l 405 (591)
T COG5293 340 LQEEIAEIEGDLKEVNA-------ELDDLGKRRAEGLAFLKNRGVFEKYQTLCEE-------IIALRGELAELEYRIEPL 405 (591)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH-------HHHHhhhHHHHHHhhhHH
Confidence 44555555555544444 7777777776555555567766666665554 555666666677777777
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 328 ETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDH 385 (1286)
Q Consensus 328 EKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs 385 (1286)
.+....++++..+....-. ..+.-+.+.+.+-.=+....+-.+.=|+...+.
T Consensus 406 ~k~~~~~~~i~~lkhe~l~------~~~r~y~e~q~q~~~~~~~~~lF~~~~r~~yd~ 457 (591)
T COG5293 406 RKLHALDQYIGTLKHECLD------LEERIYTEVQQQCSLFASIGRLFKEMIREVYDC 457 (591)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7766666655554333322 234455555555222223333333334444443
No 389
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.65 E-value=6.1e+02 Score=25.50 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 349 TKLAAAEGLCEEL--MDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 349 TKLlsLE~alEEL--~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
.++..+++.++.+ .+.+-.++-++.+++.++..+..++
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444444444 3334444444444444444444433
No 390
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=24.60 E-value=1.8e+03 Score=29.62 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhh---h-----hhhhhHHHHHhHHHHHHHHHhhH
Q psy12517 349 TKLAAAEGLCEELM----------DENEEMKKELRYLEEEMDEMQDHF---R-----EDQADEYSSLKKELEQTAKNCRI 410 (1286)
Q Consensus 349 TKLlsLE~alEEL~----------EeLEELKrE~KELReEmEELrDs~---r-----Ee~~de~~eL~KeLheleKncRi 410 (1286)
.++..++..|..|+ ..+..++.+|+.+....-+.+-.. + .-..+-.+...++.+=+..-...
T Consensus 190 kkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (769)
T PF05911_consen 190 KKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERLQA 269 (769)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhHHHHHHHHH
Confidence 78888888898887 455666677766644433322100 0 00001112224444555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHH
Q psy12517 411 LSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKEL 459 (1286)
Q Consensus 411 Lq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreL 459 (1286)
++-+-+=+...+-.=.+|++..-..|+++. ..+..+|..|
T Consensus 270 ~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta---------~kL~~~e~ql 309 (769)
T PF05911_consen 270 MEEENKMLKEALAKKNSELQFSRNMYAKTA---------SKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 666666677777777888888888888875 5777777777
No 391
>PLN00016 RNA-binding protein; Provisional
Probab=24.37 E-value=44 Score=38.93 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=31.9
Q ss_pred CCCCCCCCCcchhhhhhhhhhhhcCCCCCCCCCCCCc
Q psy12517 16 LGFHPQVRWPTRCKRCFRDYKEHGNRNRDNDLRKDDF 52 (1286)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~d~ 52 (1286)
|||+|++.|..-+.+++..|+.+|.-+|+-+.--||-
T Consensus 331 LGw~p~~~l~egl~~~~~~~~~~~~~~~~~~~~~~~~ 367 (378)
T PLN00016 331 LGWTPKFDLVEDLKDRYELYFGRGRDRKEADFETDDK 367 (378)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCccccCccccHH
Confidence 7999999999999999999999999887755555554
No 392
>KOG4603|consensus
Probab=24.31 E-value=7.3e+02 Score=27.74 Aligned_cols=48 Identities=25% Similarity=0.458 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhHHHHHhHHHHHHHHHhh
Q psy12517 359 EELMDENEEMKKELRYLEEEMDEMQD---HFREDQADEYSSLKKELEQTAKNCR 409 (1286)
Q Consensus 359 EEL~EeLEELKrE~KELReEmEELrD---s~rEe~~de~~eL~KeLheleKncR 409 (1286)
+++++.+.+|++++...++.+..++. .++.+|-.++ -+.-...-+.||
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v---~~~y~~~~~~wr 169 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV---YREYQKYCKEWR 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH---HHHHHHHHHHHH
Confidence 34455555555555555555554443 3445555555 555556666665
No 393
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=24.27 E-value=6.4e+02 Score=24.18 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM----TKTISDLQTKCSTLEKSLTAEQKQKAL-KEKE 752 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a----Kk~I~kLEaRI~eLEeeLe~EqRek~e-a~K~ 752 (1286)
+.+.|..-|..-+......+.....++.....++.....+.... ...+..|+.+=..|=.+|+.+.+++.. ....
T Consensus 1 ~k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q 80 (127)
T smart00502 1 QREALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQ 80 (127)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHhh
Q psy12517 753 LKTKESEINVLK 764 (1286)
Q Consensus 753 ~RK~ERrIKEL~ 764 (1286)
+..++..+..|.
T Consensus 81 ~~~l~~~l~~l~ 92 (127)
T smart00502 81 LESLTQKQEKLS 92 (127)
T ss_pred HHHHHHHHHHHH
No 394
>KOG2129|consensus
Probab=24.02 E-value=1.5e+03 Score=28.45 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=36.1
Q ss_pred cCCCCchHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhhhHHHHHhhhchH--HHHHhHH
Q psy12517 592 DAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETD--ILEKSSK 649 (1286)
Q Consensus 592 ~~~~~~~~L~~ElekLrs~ae~E~~EL~eELesL~sk~ssLe~eKRKLE~d--qLE~eLe 649 (1286)
.++-..+.|.+-|.-|.. ++ .=|+.+++++..++..|..+++-|-.. .+++..+
T Consensus 40 ~sP~~~e~l~~rv~slsq--~N--kvlk~elet~k~kcki~qeenr~l~~Asv~IQarae 95 (552)
T KOG2129|consen 40 FSPSPGESLGARVSSLSQ--RN--KVLKGELETLKGKCKIMQEENRPLLLASVEIQARAE 95 (552)
T ss_pred CCCCCHHHHHHHHHHHHh--hh--hhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccc
Confidence 344555667777776662 22 236678888999999999999887633 5555444
No 395
>KOG1899|consensus
Probab=23.98 E-value=1.8e+03 Score=29.25 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=10.0
Q ss_pred hhhccccccchhhhhcccC
Q psy12517 1079 DRKKKGLFGKLKQLTRSSH 1097 (1286)
Q Consensus 1079 ~~~~kg~~~kl~~~~~~~~ 1097 (1286)
+++.+||+.-+-+|++|-|
T Consensus 486 er~~rglrnifgKlrRSqS 504 (861)
T KOG1899|consen 486 ERTRRGLRNIFGKLRRSQS 504 (861)
T ss_pred ccchhHHHHHHHHhhhccc
Confidence 4666776444444444444
No 396
>PF08247 ENOD40: ENOD40 protein; InterPro: IPR013186 The soybean early nodulin 40 (ENOD40) mRNA contains two short overlapping ORFs; in vitro translation yields two peptides of 12 and 24 amino acids []. The putative role of the ENOD40 genes has been in favour of organogenesis, such as induction of the cortical cell divisions that lead to initiation of nodule primordia, in developing lateral roots and embryonic tissues. This supports the hypothesis for a role of ENOD40 in lateral organ development [].
Probab=23.95 E-value=21 Score=23.61 Aligned_cols=7 Identities=71% Similarity=1.474 Sum_probs=6.3
Q ss_pred hhhhchh
Q psy12517 1219 MELAWHK 1225 (1286)
Q Consensus 1219 ~el~w~k 1225 (1286)
|+|.|||
T Consensus 1 m~l~wqk 7 (12)
T PF08247_consen 1 MELCWQK 7 (12)
T ss_pred CceeEee
Confidence 8999997
No 397
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.95 E-value=2.7e+02 Score=31.37 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy12517 291 TTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRE 326 (1286)
Q Consensus 291 t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLre 326 (1286)
.+.+++..++..+.+++.+|+.++..++.+..++.+
T Consensus 159 ~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 159 KTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 367889999999888888888888777777776654
No 398
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.94 E-value=7.6e+02 Score=27.18 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q psy12517 321 SLRVRELET 329 (1286)
Q Consensus 321 ~qrLreLEK 329 (1286)
..-|.||+.
T Consensus 83 ~~vI~fLq~ 91 (161)
T TIGR02894 83 QDVISFLQN 91 (161)
T ss_pred HHHHHHHHH
Confidence 444555543
No 399
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=23.83 E-value=1e+03 Score=26.44 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc
Q psy12517 722 TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD 769 (1286)
Q Consensus 722 Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee 769 (1286)
+....-|+.|-......|+.-...+.+++..+..++.++.+...+..+
T Consensus 71 kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~ 118 (205)
T PRK06231 71 KPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKE 118 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788888888888888888999999999999999888776665
No 400
>PRK14161 heat shock protein GrpE; Provisional
Probab=23.78 E-value=2.3e+02 Score=31.03 Aligned_cols=32 Identities=19% Similarity=0.086 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 409 RILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 409 RiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
-|||--+.-++..++.++.++..+.++++|+.
T Consensus 15 ~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~ 46 (178)
T PRK14161 15 DIAEEIVETANPEITALKAEIEELKDKLIRTT 46 (178)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555556666667777777777777776
No 401
>KOG3647|consensus
Probab=23.77 E-value=1.3e+03 Score=27.54 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHH
Q psy12517 341 EREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRK 417 (1286)
Q Consensus 341 d~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrK 417 (1286)
..+.+.+|.+|.++...-=-.|++-|..+.+++ .-.+-+--.| --+.-|.+.|+...+.-+|++-++.+
T Consensus 146 k~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLq---kly~~Y~l~f-----~nl~yL~~qldd~~rse~~rqeeaen 214 (338)
T KOG3647|consen 146 KAELERTRKRLEALQSIRPAHMDEYEDCEEELQ---KLYQRYFLRF-----HNLDYLKSQLDDRTRSEPIRQEEAEN 214 (338)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH---HHHHHHHHHH-----hhHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 344455555555555554444444444444333 3333344444 23333566666666666665554444
No 402
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.76 E-value=5.5e+02 Score=23.19 Aligned_cols=26 Identities=54% Similarity=0.691 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 355 EGLCEELMDENEEMKKELRYLEEEMD 380 (1286)
Q Consensus 355 E~alEEL~EeLEELKrE~KELReEmE 380 (1286)
+..+..+..++..|..++..|..++.
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 403
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=23.66 E-value=1.3e+03 Score=29.37 Aligned_cols=74 Identities=24% Similarity=0.330 Sum_probs=54.1
Q ss_pred hhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy12517 662 ERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTA 741 (1286)
Q Consensus 662 ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~ 741 (1286)
.|...+.. |.+ ++.-+++|.+.|.+-+.+..++......|+.+..+++.-+.++.- .+..|-++.++|..++++
T Consensus 419 ~~~~~L~~-Ik~-SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~p----kL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 419 PRTQHLFM-IKS-SPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEP----KLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHH-Hhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHH
Confidence 44445433 332 266789999999999999999988888888888888777766643 366777777777777764
No 404
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=23.08 E-value=1.4e+03 Score=27.62 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=11.3
Q ss_pred CCCCccchhhhhhhhhhc
Q psy12517 197 DKPSKADVDFILQVKDAK 214 (1286)
Q Consensus 197 ~~~~~~dv~f~~~v~~~~ 214 (1286)
......+|+|-=.|-+.+
T Consensus 51 ~~vda~~vDFSd~i~~kr 68 (388)
T PF04912_consen 51 ARVDARGVDFSDRISKKR 68 (388)
T ss_pred CcCCCCCCCchhhccccc
Confidence 345677888866654444
No 405
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.97 E-value=1e+03 Score=26.17 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred hHHHHHhHHHhHHHHHHhhHHHhhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcc
Q psy12517 696 NAEKVTKLERDKTSLEENLKSKETQM-------TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSS 768 (1286)
Q Consensus 696 lE~~rk~LE~qvKELq~RL~E~Es~a-------Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~e 768 (1286)
|.+.+..+...+--.+.-....-+.+ ......++.+|..|+.++..-..+...........+++..+.....+
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cchHHHHHHHH---HHHHHHHH
Q psy12517 769 DNVTKQITELK---TQYEQEIK 787 (1286)
Q Consensus 769 ekn~~rlqEl~---KqyKRQlE 787 (1286)
.++.+.++-++ ++++-+++
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 406
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.74 E-value=5e+02 Score=27.84 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=27.2
Q ss_pred HHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh------hhhHHHHHHHHH
Q psy12517 689 LKKEAQRNAEKVTKLERDKTSLEENLKSKETQM------TKTISDLQTKCS 733 (1286)
Q Consensus 689 Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a------Kk~I~kLEaRI~ 733 (1286)
.+..+-.+...+..|..|+++....|..+...+ +++|..|++.+.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 344444445556666667777776666666543 556666666666
No 407
>KOG4196|consensus
Probab=22.44 E-value=1.5e+02 Score=31.29 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=27.0
Q ss_pred hhhHHHHHHHhHHHHhhhhhhhHHHHHHHhHHHH
Q psy12517 1017 ALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTI 1050 (1286)
Q Consensus 1017 ~~~~e~~~~~~~~~r~kr~rd~~k~~le~aq~~~ 1050 (1286)
-|..+|..|...+++..+|||.||.-.+.++--+
T Consensus 85 ~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 85 ELQQQVEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3555666777778888999999999999998443
No 408
>KOG3453|consensus
Probab=22.24 E-value=39 Score=34.54 Aligned_cols=23 Identities=26% Similarity=0.628 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCC-CCcchhhhhh
Q psy12517 10 GDPLCPLGFHPQV-RWPTRCKRCF 32 (1286)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~~~ 32 (1286)
|.|+||..|-|-- +||+||--|-
T Consensus 1 ~~~~~~~d~~~g~~~f~~rc~qch 24 (110)
T KOG3453|consen 1 GAPVPAGDVEKGKKIFPQRCAQCH 24 (110)
T ss_pred CCCccccccccccccceeeccccc
Confidence 5799999999875 5999999993
No 409
>KOG3564|consensus
Probab=21.88 E-value=7.2e+02 Score=31.58 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy12517 725 ISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINV 762 (1286)
Q Consensus 725 I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKE 762 (1286)
.+.|+.++-..-+++++|-+++..+.-.+.++|.+|+-
T Consensus 65 ~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~ 102 (604)
T KOG3564|consen 65 RSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQL 102 (604)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 66777788888888899999999999999999998873
No 410
>PRK11677 hypothetical protein; Provisional
Probab=21.83 E-value=2.4e+02 Score=29.84 Aligned_cols=30 Identities=27% Similarity=0.590 Sum_probs=22.6
Q ss_pred hhhHHHHHHHhHHHHhhhhhcCCCCCccccC
Q psy12517 1036 RDTFKHMLEGAQKTIADLKASHNSPTTSRLS 1066 (1286)
Q Consensus 1036 rd~~k~~le~aq~~~~~~k~~~~~~~~srls 1066 (1286)
|+-|.||-+||+.=.-++..+ |.+..+++.
T Consensus 71 ~~Ly~HlA~~s~~Llp~~~~q-~~pf~~~l~ 100 (134)
T PRK11677 71 RQLYQHMAKSSSELLPNLPAQ-DNPFRNRLA 100 (134)
T ss_pred HHHHHHHHHHHHHHccccccc-cchhHhhhh
Confidence 578999999999877777655 556666663
No 411
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.39 E-value=1.3e+03 Score=26.73 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=30.5
Q ss_pred cCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 288 TSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAF 334 (1286)
Q Consensus 288 ~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkf 334 (1286)
++++++-.....|..++.- +++++....+..-..+..++.++..+
T Consensus 25 ~skstgt~s~~~q~~l~ne--e~~eLk~qnkli~K~l~ei~~~qd~r 69 (230)
T PF03904_consen 25 NSKSTGTQSQKTQMSLENE--EIQELKRQNKLIIKYLSEIEEKQDIR 69 (230)
T ss_pred hhhccCCCcHHHHHHHhHH--HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4555544455666666554 68888888888888888888876533
No 412
>KOG4571|consensus
Probab=20.90 E-value=3.1e+02 Score=32.43 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 349 TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
.+-.++.+.|+.+...+++|++.+..|..||..|++-|
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888888888888888888888
No 413
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.88 E-value=2.2e+02 Score=34.18 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=10.9
Q ss_pred hHHhhhhhhHHHHHHHHHHHHH
Q psy12517 555 TVLMRDLQDSMEREADLREQLR 576 (1286)
Q Consensus 555 k~lqreLqds~Ere~DLkeQLr 576 (1286)
.||-.+++..+..=.+++..|+
T Consensus 286 ~DlS~~~l~kRr~~~~i~~~Lr 307 (370)
T PF02994_consen 286 PDLSPETLQKRRKFNPIKKKLR 307 (370)
T ss_dssp CTSTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555444455554444
No 414
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=20.80 E-value=8.2e+02 Score=24.14 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELR 373 (1286)
Q Consensus 294 sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~K 373 (1286)
++|..+++....+...+.....+...+.+.+.-|... +...-.++|++....+.+..++..+...+.
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~E-------------k~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAE-------------KAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666665555555543 233334556666655555555555554444
Q ss_pred HHHHHH
Q psy12517 374 YLEEEM 379 (1286)
Q Consensus 374 ELReEm 379 (1286)
.-..-+
T Consensus 70 Ks~~~i 75 (96)
T PF08647_consen 70 KSSELI 75 (96)
T ss_pred HhHHHH
Confidence 333333
No 415
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=20.67 E-value=7.7e+02 Score=26.43 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
+-+|.+.+++.-.|+.++.++...+-.--.+++.++.++.+.+
T Consensus 14 ~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae 56 (136)
T PF11570_consen 14 RAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAE 56 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6677777888888888888888777777777777777776644
No 416
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=20.48 E-value=1.3e+03 Score=26.18 Aligned_cols=98 Identities=9% Similarity=0.132 Sum_probs=56.9
Q ss_pred HHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc-ch
Q psy12517 693 AQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD-NV 771 (1286)
Q Consensus 693 ~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee-kn 771 (1286)
+..++..||.+-...+-++.++.++++++.|.=...+..+.++|.-... +..-++ ..+ ++
T Consensus 99 ~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~---------------~~~~~~----~~~~k~ 159 (234)
T cd07652 99 AKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTG---------------DPGKKL----KFGLKG 159 (234)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------CCCccc----cccccc
Confidence 4455667777777777778888888888766666677777777621111 000000 111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q psy12517 772 TKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDI 809 (1286)
Q Consensus 772 ~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEe 809 (1286)
......+-+.+.+++++|...-..-...+-.+|+++..
T Consensus 160 ~~~~~~~Ee~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~ 197 (234)
T cd07652 160 NKSAAQHEDELLRKVQAADQDYASKVNAAQALRQELLS 197 (234)
T ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233466677777777777777777777776654
No 417
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.45 E-value=3.4e+02 Score=23.82 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 350 KLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 350 KLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
....+...|+.+....+.+..++..|+.++..+...+
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777788888888888888888877776554
No 418
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=20.34 E-value=1.2e+03 Score=25.98 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDIL 277 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~e~eks~il 277 (1286)
.+.+.+|..|-.+|..+-..++.+-+-..++.
T Consensus 15 ~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela 46 (224)
T cd07623 15 EEKQQQIENLDQQLRKLHASVESLVNHRKELA 46 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999998877766655543
No 419
>KOG3612|consensus
Probab=20.19 E-value=1.2e+03 Score=29.98 Aligned_cols=62 Identities=23% Similarity=0.334 Sum_probs=40.8
Q ss_pred CCCCCCCCcchhhhhhhhhhhhcCCCCCCCCCCCCccccCCCCCCcccccccccccccCCCCCCCCccCCCcCCCCCCCC
Q psy12517 17 GFHPQVRWPTRCKRCFRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRDYKEHGNRNRDNDLRKDDFTVSSPSLS 96 (1286)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~d~~~s~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1286)
-|-|-.+||-+|.-|.+-- |-|+..||..++|.+..--+++.- .-+++
T Consensus 298 ~vg~S~~~i~~cpl~~~s~---------ntl~~g~tw~tk~c~~~~e~apap-----------------------~ag~S 345 (588)
T KOG3612|consen 298 FVGQSIREIRRCPLCYRSS---------NTLSLGDTWFTKPCLQRHELAPAP-----------------------QAGSS 345 (588)
T ss_pred ccCCCCCCCCCChHHHHhh---------hhhhccccccccccccccccccCc-----------------------cccCC
Confidence 3456889999999998732 455667888888887765432211 11455
Q ss_pred cccccccchhcccc
Q psy12517 97 SWTSASTIRESEKK 110 (1286)
Q Consensus 97 ~~~s~~~~~~~~~~ 110 (1286)
.|--.+.++.-+++
T Consensus 346 p~p~kvp~spre~i 359 (588)
T KOG3612|consen 346 PWPAKVPVSPREPI 359 (588)
T ss_pred CcccccccCccccc
Confidence 57777777776664
No 420
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.16 E-value=1.3e+03 Score=26.35 Aligned_cols=77 Identities=8% Similarity=0.151 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 722 TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQ 798 (1286)
Q Consensus 722 Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~KqyKRQlEEaEEea~~~~a 798 (1286)
|....-++.|=......|+.=...+.++.+....++.++.++..+...--..--.+-.+...+-+++|.+++.+...
T Consensus 28 kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~ 104 (250)
T PRK14474 28 KPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARD 104 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888888888888888889888887776655410000011113344455566666555554
No 421
>KOG4466|consensus
Probab=20.07 E-value=1.1e+03 Score=28.10 Aligned_cols=99 Identities=22% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHhhhchH---HHHHhHHHH-hhhhhhhhhhhhhhhh------HhhhcchhhhhHHHHHHHHHHH
Q psy12517 620 GELESLKSKLSALEAEKKKFETD---ILEKSSKIT-QLEASIREERERATDL------SVKAGSAASRELNQLREELTQL 689 (1286)
Q Consensus 620 eELesL~sk~ssLe~eKRKLE~d---qLE~eLeE~-q~E~e~~~~~ER~kKa------~~~~~~~~e~q~~qL~eEL~~E 689 (1286)
.....+..--......+..+-.+ +|+.+|++. ++-+..+. ++++++ .. .++.+-.++.-+
T Consensus 20 ~~~~e~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl--~~~~~L~~~~kerl--------~~aely~e~~~e 89 (291)
T KOG4466|consen 20 NEESEMSNLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYL--KRVKKLDESRKERL--------RVAELYREYCVE 89 (291)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHH--HHHHHHHHHHHHHH--------HHHHHHHHHHHH
Q ss_pred HHH---HHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHH
Q psy12517 690 KKE---AQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKS 738 (1286)
Q Consensus 690 qe~---~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEee 738 (1286)
+.. .-.+..+++.+|...+.|...| |+.||.|++-||++
T Consensus 90 ~v~~eYe~E~~aAk~e~E~~~~lLke~l----------~seleeKkrkieee 131 (291)
T KOG4466|consen 90 RVEREYECEIKAAKKEYESKKKLLKENL----------ISELEEKKRKIEEE 131 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
No 422
>KOG4677|consensus
Probab=20.04 E-value=1.9e+03 Score=27.99 Aligned_cols=298 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCCCccccCCCCCCcccccccccccccCCCCCCCCccCCCcCCCCCCCCcccccccchhcccccCCcccccccCCccCC
Q psy12517 47 LRKDDFTVSSPSLSSWTSASTIRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRESEKKNEGRSWTSSTNLSSVS 126 (1286)
Q Consensus 47 ~~~~d~~~s~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~wts~~~l~~~~ 126 (1286)
+|+..+.+++-+..+.. ...-.+||.+.++..-+|+-+. --++.||..+ |-
T Consensus 36 ~R~gtvkv~srtv~s~~-----------------~~V~~~d~~rp~~hfvsr~~s~-------D~~s~~w~pt-----ir 86 (554)
T KOG4677|consen 36 LREGTVKVSSRTVNSLR-----------------DFVDDDDDDRPERHFVSRSGSP-------DVGSISWSPT-----IR 86 (554)
T ss_pred hhccchhhhcccccccc-----------------cccccccCCCcchhhcccccCC-------CcCccccCCc-----cc
Q ss_pred CCCCcCCCCCCCCCCCCCCCccccccchheeecccCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCccchhh
Q psy12517 127 SSNDSQNSSRRPPPEDSSNEDDDYRSTKYVVRRRTSHLPATSTSSSNAEPSTSSNTTRTRSSASPRLKTPDKPSKADVDF 206 (1286)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~f 206 (1286)
.-..| ||+--|.+-....-..+-++- .-+.+.+|+.++..+-+..+-+-.-+||.+-.+--..-|+-|+.-
T Consensus 87 ~e~GS-~S~~~p~vt~~~~s~ensf~S----eaa~n~~Pd~t~t~~~s~ks~~~~~~r~~se~~~~d~~~~~~~~~---- 157 (554)
T KOG4677|consen 87 EEAGS-NSGSTPEVTEQLKSRENSFSS----EAAYNQLPDPTSTYSLSSKSFFRGRTRPGSEQSLSDALSDTPAKS---- 157 (554)
T ss_pred cccCC-ccCcCCcchhhhhhhhhcccc----HhhhccCCCCCCCccccccchhhhhcccchhhhccccccccchhh----
Q ss_pred hhhhhhhccccccCCCCCCCccccCccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHH--HHhhhcc
Q psy12517 207 ILQVKDAKKTRRKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDIL--LRRLASM 284 (1286)
Q Consensus 207 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~~t~~t~v~~~~~~~~i~~lr~el~~~k~rce~~e~eks~il--lrrl~~~ 284 (1286)
+..+.+...-. +-..++--+-+.+-|. -=.|+..-.-++.|.|-+|+= |-+. +-+|--.
T Consensus 158 ----------------~a~d~~~s~~~-q~~d~~e~~~~kdSQl-kvrlqe~~~ll~~Rve~le~~-Sal~~lq~~L~la 218 (554)
T KOG4677|consen 158 ----------------YAPDLGRSKGE-QYRDYSEDWSPKDSQL-KVRLQEVRRLLKGRVESLERF-SALRSLQDKLQLA 218 (554)
T ss_pred ----------------cccccccchhh-hHhhHhhhcccchhhH-HHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHH
Q ss_pred ccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy12517 285 ETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEEL--- 361 (1286)
Q Consensus 285 ~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL--- 361 (1286)
+.+...-..+-+...--=+.++.+.=...++.++..+-..+.|-...+-|+ .....-+++.+...-++|
T Consensus 219 ~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~d--------e~k~~~~l~~~l~~keeL~~s 290 (554)
T KOG4677|consen 219 EEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEID--------EQKLLLDLFRFLDRKEELALS 290 (554)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhHHHHHHH
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHH
Q psy12517 362 -----------------MDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRK 417 (1286)
Q Consensus 362 -----------------~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrK 417 (1286)
..+++++.=+..--+++++-+++++ ..+ +.++.+++-+-|-|+-.++.
T Consensus 291 ~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~-----~~L---rs~~~d~EAq~r~l~s~~~~ 355 (554)
T KOG4677|consen 291 HYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQY-----TLL---RSQIIDIEAQDRHLESAGQT 355 (554)
T ss_pred HHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHH-----HHH---HHHHHHHHHHHHhHHHHhHH
Done!