Query psy12517
Match_columns 1286
No_of_seqs 246 out of 284
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 21:20:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.7 4.9E-08 1.7E-12 124.2 11.1 33 295-327 858-890 (1184)
2 1i84_S Smooth muscle myosin he 98.6 5.7E-08 2E-12 123.6 11.6 87 345-439 860-946 (1184)
3 1c1g_A Tropomyosin; contractIl 98.5 0.00042 1.4E-08 70.4 32.4 28 555-582 9-36 (284)
4 1c1g_A Tropomyosin; contractIl 98.5 0.00048 1.6E-08 70.0 32.3 26 557-582 4-29 (284)
5 3zwh_Q Myosin-9; Ca-binding pr 97.0 0.00012 4.2E-09 61.1 0.8 32 800-835 1-32 (45)
6 2v71_A Nuclear distribution pr 96.3 1.2 4E-05 47.2 24.3 148 292-475 8-155 (189)
7 3na7_A HP0958; flagellar bioge 96.2 0.49 1.7E-05 51.1 21.5 49 392-440 90-138 (256)
8 3na7_A HP0958; flagellar bioge 95.9 0.63 2.2E-05 50.3 20.7 59 772-834 92-150 (256)
9 3o0z_A RHO-associated protein 95.6 0.63 2.2E-05 48.4 18.4 144 644-817 11-162 (168)
10 2v71_A Nuclear distribution pr 95.3 1.6 5.4E-05 46.2 20.2 109 363-481 10-119 (189)
11 3vkg_A Dynein heavy chain, cyt 95.0 0.83 2.8E-05 64.4 22.0 163 336-521 1911-2076(3245)
12 2dfs_A Myosin-5A; myosin-V, in 95.0 0.44 1.5E-05 61.2 18.1 40 398-440 997-1036(1080)
13 3o0z_A RHO-associated protein 94.7 1.1 3.6E-05 46.7 16.7 120 676-829 12-138 (168)
14 2dfs_A Myosin-5A; myosin-V, in 94.4 0.7 2.4E-05 59.3 18.0 40 398-440 1004-1043(1080)
15 2efr_A General control protein 94.3 3.6 0.00012 42.3 19.4 71 727-811 39-111 (155)
16 2fxo_A Myosin heavy chain, car 94.0 0.57 1.9E-05 46.2 12.5 94 676-769 12-122 (129)
17 2ocy_A RAB guanine nucleotide 93.8 7.1 0.00024 40.2 20.2 89 344-432 53-141 (154)
18 3vkg_A Dynein heavy chain, cyt 93.5 6.1 0.00021 56.1 25.4 11 24-34 1542-1552(3245)
19 2efr_A General control protein 93.5 1.9 6.7E-05 44.3 15.7 54 701-754 73-129 (155)
20 3oja_B Anopheles plasmodium-re 92.5 1.3 4.6E-05 51.8 14.8 30 402-431 540-569 (597)
21 2fxo_A Myosin heavy chain, car 91.4 12 0.0004 36.9 18.5 78 349-427 20-97 (129)
22 3oja_B Anopheles plasmodium-re 90.4 1 3.4E-05 52.9 10.8 17 724-740 510-526 (597)
23 2v66_B Nuclear distribution pr 89.5 16 0.00053 35.9 16.3 68 393-476 36-103 (111)
24 3u1c_A Tropomyosin alpha-1 cha 86.7 22 0.00075 33.8 15.3 38 398-435 29-66 (101)
25 3ghg_A Fibrinogen alpha chain; 85.4 22 0.00075 42.7 17.4 68 397-479 122-191 (562)
26 2b9c_A Striated-muscle alpha t 84.9 8.4 0.00029 39.1 12.1 91 643-740 21-111 (147)
27 3i00_A HIP-I, huntingtin-inter 84.1 4.5 0.00015 40.0 9.4 99 703-810 20-118 (120)
28 3tnu_B Keratin, type II cytosk 83.6 13 0.00046 36.4 12.6 82 679-760 31-119 (129)
29 3ol1_A Vimentin; structural ge 83.3 36 0.0012 33.3 15.5 97 297-394 16-113 (119)
30 3tnu_A Keratin, type I cytoske 82.1 12 0.00043 36.8 11.8 82 679-760 33-121 (131)
31 3tnu_B Keratin, type II cytosk 80.7 24 0.00081 34.7 13.2 43 289-331 31-73 (129)
32 2ocy_A RAB guanine nucleotide 80.3 57 0.002 33.6 17.2 30 246-275 16-45 (154)
33 3ol1_A Vimentin; structural ge 79.6 35 0.0012 33.3 13.8 30 452-481 71-100 (119)
34 3u59_A Tropomyosin beta chain; 78.5 46 0.0016 31.5 14.8 34 402-435 47-80 (101)
35 3i00_A HIP-I, huntingtin-inter 78.5 15 0.00051 36.4 10.9 78 340-422 38-115 (120)
36 1x79_B RAB GTPase binding effe 78.3 32 0.0011 33.8 13.0 61 677-744 6-66 (112)
37 2eqb_B RAB guanine nucleotide 77.8 19 0.00066 34.6 11.0 63 678-740 27-93 (97)
38 3tnu_A Keratin, type I cytoske 77.4 21 0.00072 35.2 11.7 42 290-331 34-75 (131)
39 3u59_A Tropomyosin beta chain; 77.1 50 0.0017 31.2 14.6 14 418-431 77-90 (101)
40 2eqb_B RAB guanine nucleotide 75.3 54 0.0018 31.6 13.3 62 350-411 27-88 (97)
41 4gkw_A Spindle assembly abnorm 75.0 17 0.00058 36.7 10.2 28 931-959 137-164 (167)
42 3hnw_A Uncharacterized protein 74.4 21 0.00071 35.9 10.9 28 351-378 70-97 (138)
43 3u1c_A Tropomyosin alpha-1 cha 73.8 63 0.0021 30.7 14.9 35 402-436 47-81 (101)
44 2e7s_A RAB guanine nucleotide 73.6 7 0.00024 39.5 7.2 78 347-424 44-121 (135)
45 1gk4_A Vimentin; intermediate 71.8 27 0.00091 32.2 10.1 69 694-762 4-72 (84)
46 1l8d_A DNA double-strand break 69.7 74 0.0025 29.8 13.9 83 298-380 7-102 (112)
47 2i1j_A Moesin; FERM, coiled-co 68.1 6.5 0.00022 47.3 6.7 67 366-440 331-397 (575)
48 1ic2_A Tropomyosin alpha chain 65.8 35 0.0012 31.1 9.5 18 369-386 5-22 (81)
49 1f5n_A Interferon-induced guan 64.4 2.5E+02 0.0087 34.1 20.2 106 723-831 473-582 (592)
50 3cl3_D NF-kappa-B essential mo 63.7 12 0.00041 37.6 6.3 102 680-781 5-124 (130)
51 2i1j_A Moesin; FERM, coiled-co 63.6 6.5 0.00022 47.3 5.5 114 698-811 328-446 (575)
52 2jee_A YIIU; FTSZ, septum, coi 63.2 77 0.0026 29.7 11.2 36 351-386 36-71 (81)
53 2v66_B Nuclear distribution pr 61.2 1.3E+02 0.0044 29.6 15.7 58 398-464 48-105 (111)
54 3ghg_A Fibrinogen alpha chain; 60.2 1.3E+02 0.0045 36.3 15.2 56 774-833 107-162 (562)
55 1x8y_A Lamin A/C; structural p 60.2 33 0.0011 31.8 8.3 63 699-761 11-73 (86)
56 3mov_A Lamin-B1; LMNB1, B-type 59.9 28 0.00096 33.1 8.0 67 695-761 16-82 (95)
57 2e7s_A RAB guanine nucleotide 58.6 21 0.00071 36.2 7.1 61 678-738 47-111 (135)
58 3oja_A Leucine-rich immune mol 57.0 92 0.0032 35.8 13.3 58 772-833 409-466 (487)
59 2v4h_A NF-kappa-B essential mo 57.0 68 0.0023 31.5 10.1 34 344-377 26-59 (110)
60 1ic2_A Tropomyosin alpha chain 56.4 1.1E+02 0.0038 27.8 11.1 70 348-432 5-74 (81)
61 3bas_A Myosin heavy chain, str 55.9 1E+02 0.0034 28.7 10.9 40 675-714 12-51 (89)
62 3swk_A Vimentin; cytoskeleton, 53.7 1.3E+02 0.0046 27.9 11.3 33 452-484 51-83 (86)
63 2zqm_A Prefoldin beta subunit 52.4 1.5E+02 0.0052 27.7 12.4 87 678-764 7-111 (117)
64 3q8t_A Beclin-1; autophagy, AT 51.6 1.6E+02 0.0056 27.8 13.1 28 398-425 66-93 (96)
65 1m1j_B Fibrinogen beta chain; 51.5 1.8E+02 0.0062 34.6 14.6 17 703-719 98-114 (464)
66 3bas_A Myosin heavy chain, str 48.8 1.6E+02 0.0055 27.3 11.0 22 363-384 35-56 (89)
67 4gkw_A Spindle assembly abnorm 47.8 2.4E+02 0.0082 28.6 16.9 104 361-471 16-119 (167)
68 3iv1_A Tumor susceptibility ge 46.8 1.1E+02 0.0037 28.5 9.3 59 355-421 17-75 (78)
69 1l8d_A DNA double-strand break 45.8 1.9E+02 0.0066 27.0 12.4 42 723-764 3-44 (112)
70 1w1w_A Structural maintenance 45.0 6.6 0.00023 44.6 1.3 64 914-980 222-289 (430)
71 3mq7_A Bone marrow stromal ant 45.0 2.4E+02 0.0083 28.1 11.9 55 682-736 30-84 (121)
72 2oqq_A Transcription factor HY 44.9 33 0.0011 28.6 5.0 28 702-740 7-34 (42)
73 3swk_A Vimentin; cytoskeleton, 44.8 2E+02 0.0067 26.8 11.7 80 304-383 3-83 (86)
74 1d7m_A Cortexillin I; coiled-c 44.6 2.2E+02 0.0075 27.3 11.6 77 682-758 2-81 (101)
75 3oja_A Leucine-rich immune mol 44.2 3.7E+02 0.013 30.8 15.6 35 398-432 441-475 (487)
76 2zqm_A Prefoldin beta subunit 44.1 2E+02 0.007 26.8 13.3 38 295-332 7-44 (117)
77 3mq9_A Bone marrow stromal ant 43.3 1.2E+02 0.0039 34.8 11.2 64 643-719 401-464 (471)
78 1deq_A Fibrinogen (alpha chain 42.9 3E+02 0.01 32.1 14.1 84 727-811 64-147 (390)
79 4etp_A Kinesin-like protein KA 42.1 50 0.0017 38.1 8.0 30 451-480 32-61 (403)
80 3mq9_A Bone marrow stromal ant 41.2 3.4E+02 0.011 31.0 14.6 32 684-715 404-435 (471)
81 3cvf_A Homer-3, homer protein 41.1 61 0.0021 30.2 6.8 55 403-480 3-57 (79)
82 1m1j_C Fibrinogen gamma chain; 40.0 3.1E+02 0.011 32.0 14.1 51 780-834 87-137 (409)
83 2v4h_A NF-kappa-B essential mo 39.9 2.8E+02 0.0096 27.3 11.4 42 288-329 18-59 (110)
84 1x8y_A Lamin A/C; structural p 39.6 1.4E+02 0.0048 27.6 9.1 47 780-830 31-77 (86)
85 2ke4_A CDC42-interacting prote 39.1 85 0.0029 30.0 7.7 73 725-811 17-89 (98)
86 2wt7_B Transcription factor MA 38.9 24 0.00083 33.5 3.9 36 1011-1046 53-88 (90)
87 3jsv_C NF-kappa-B essential mo 38.8 1.6E+02 0.0055 28.3 9.3 86 706-832 3-91 (94)
88 3oj3_I Tumor necrosis factor a 38.0 16 0.00055 31.3 2.2 31 8-38 15-48 (49)
89 1fxk_A Prefoldin; archaeal pro 37.9 2.4E+02 0.0084 25.9 11.8 80 681-760 5-102 (107)
90 1f5n_A Interferon-induced guan 36.6 2.3E+02 0.008 34.4 12.8 58 696-762 499-556 (592)
91 2lw1_A ABC transporter ATP-bin 36.4 89 0.003 28.8 7.2 53 309-361 23-82 (89)
92 3s4r_A Vimentin; alpha-helix, 36.1 2.8E+02 0.0096 26.1 12.2 27 398-424 62-88 (93)
93 2xnx_M M protein, M1-BC1; cell 34.3 1.4E+02 0.0049 30.6 8.7 64 395-467 69-132 (146)
94 3kta_B Chromosome segregation 34.1 11 0.00037 38.5 0.7 31 955-987 2-36 (173)
95 3swy_A Cyclic nucleotide-gated 34.0 84 0.0029 26.7 5.9 43 696-738 3-45 (46)
96 4h22_A Leucine-rich repeat fli 33.2 2.5E+02 0.0086 27.4 9.8 27 398-424 57-83 (103)
97 3a7p_A Autophagy protein 16; c 33.2 4.3E+02 0.015 27.3 12.8 64 309-378 69-132 (152)
98 1wt6_A Myotonin-protein kinase 33.1 2E+02 0.0068 27.0 8.8 27 398-424 44-70 (81)
99 3ljm_A Coil Ser L9C; de novo d 33.1 52 0.0018 25.2 4.0 26 401-426 3-28 (31)
100 1gk4_A Vimentin; intermediate 32.9 2.9E+02 0.0099 25.3 10.9 47 780-830 29-75 (84)
101 2no2_A HIP-I, huntingtin-inter 32.9 3.5E+02 0.012 26.2 14.1 62 345-410 11-72 (107)
102 3s84_A Apolipoprotein A-IV; fo 32.7 5.3E+02 0.018 28.3 23.0 28 805-832 198-225 (273)
103 1fxk_A Prefoldin; archaeal pro 32.6 3E+02 0.01 25.3 12.1 35 294-328 8-42 (107)
104 3swf_A CGMP-gated cation chann 32.6 87 0.003 28.9 6.2 45 696-740 5-49 (74)
105 2jee_A YIIU; FTSZ, septum, coi 32.3 3.2E+02 0.011 25.6 11.1 20 310-329 15-34 (81)
106 3nmd_A CGMP dependent protein 32.0 95 0.0033 28.5 6.4 23 361-383 45-67 (72)
107 4h22_A Leucine-rich repeat fli 31.8 3.2E+02 0.011 26.7 10.3 64 361-425 14-77 (103)
108 1go4_E MAD1 (mitotic arrest de 30.5 97 0.0033 30.0 6.5 27 250-276 12-38 (100)
109 1deq_A Fibrinogen (alpha chain 30.4 7.2E+02 0.025 29.1 17.4 131 311-479 63-194 (390)
110 3trt_A Vimentin; cytoskeleton, 30.0 2.3E+02 0.0078 25.2 8.6 49 777-829 28-76 (77)
111 1m1j_B Fibrinogen beta chain; 29.9 7.8E+02 0.027 29.3 17.0 30 405-434 167-196 (464)
112 3a7p_A Autophagy protein 16; c 29.7 4.2E+02 0.015 27.3 11.4 43 344-386 70-112 (152)
113 1ik9_A DNA repair protein XRCC 29.5 3.3E+02 0.011 29.1 11.1 56 693-748 148-207 (213)
114 3iv1_A Tumor susceptibility ge 29.4 2.6E+02 0.0089 26.1 8.9 55 679-737 20-74 (78)
115 1j1e_C Troponin I, TNI; THIN f 29.3 5E+02 0.017 27.5 12.1 87 460-581 61-149 (180)
116 3iox_A AGI/II, PA; alpha helix 28.7 5.5E+02 0.019 30.9 13.6 68 359-437 37-104 (497)
117 3u06_A Protein claret segregat 28.3 1.3E+02 0.0044 35.0 8.4 28 453-480 34-61 (412)
118 3s4r_A Vimentin; alpha-helix, 28.0 3.8E+02 0.013 25.2 13.0 76 296-386 11-86 (93)
119 2k48_A Nucleoprotein; viral pr 27.7 1.4E+02 0.0048 29.2 7.1 18 723-740 82-99 (107)
120 1m1j_C Fibrinogen gamma chain; 26.7 6.6E+02 0.023 29.4 13.8 40 293-332 26-65 (409)
121 1ci6_A Transcription factor AT 26.6 2E+02 0.007 25.2 7.4 38 349-386 23-60 (63)
122 3nmd_A CGMP dependent protein 26.5 1.8E+02 0.006 26.8 7.1 27 303-329 21-47 (72)
123 1m1j_A Fibrinogen alpha subuni 26.3 6.9E+02 0.024 29.9 13.7 85 744-833 79-163 (491)
124 1ik9_A DNA repair protein XRCC 25.4 6.1E+02 0.021 27.1 12.3 64 361-434 144-207 (213)
125 2kzy_A ZNF216-A20, zfand5 prot 25.4 47 0.0016 29.8 3.1 27 10-36 12-40 (62)
126 3he5_A Synzip1; heterodimeric 25.2 1.8E+02 0.0062 24.2 6.2 43 725-767 5-47 (49)
127 1x79_B RAB GTPase binding effe 24.8 5.1E+02 0.017 25.5 13.7 34 345-378 73-106 (112)
128 4ani_A Protein GRPE; chaperone 24.6 1.4E+02 0.0047 32.2 7.2 25 416-440 62-86 (213)
129 3q8t_A Beclin-1; autophagy, AT 23.8 4.7E+02 0.016 24.7 14.5 79 346-439 8-86 (96)
130 2w83_C C-JUN-amino-terminal ki 23.3 2.1E+02 0.0072 26.6 7.0 62 678-739 3-74 (77)
131 3cve_A Homer protein homolog 1 22.3 4.6E+02 0.016 24.1 9.2 43 344-386 16-58 (72)
132 3qh9_A Liprin-beta-2; coiled-c 22.3 4.3E+02 0.015 24.8 8.9 54 411-473 24-77 (81)
133 4dk0_A Putative MACA; alpha-ha 22.0 4.1E+02 0.014 29.0 10.6 83 244-327 64-148 (369)
134 3k29_A Putative uncharacterize 21.9 7.1E+02 0.024 26.1 16.3 121 702-834 6-130 (169)
135 1a93_B MAX protein, coiled coi 21.9 35 0.0012 27.4 1.5 24 1137-1160 11-34 (34)
136 3mud_A DNA repair protein XRCC 21.7 60 0.002 34.1 3.6 104 672-810 48-168 (175)
137 4dk0_A Putative MACA; alpha-ha 21.3 2E+02 0.0069 31.5 7.9 49 400-448 116-166 (369)
138 3u06_A Protein claret segregat 21.2 1.3E+02 0.0046 34.9 6.7 32 354-385 8-39 (412)
139 1wt6_A Myotonin-protein kinase 21.1 5.2E+02 0.018 24.3 9.5 42 398-439 30-71 (81)
140 3ni0_A Bone marrow stromal ant 21.1 4.6E+02 0.016 25.3 9.1 39 679-717 48-86 (99)
141 3vp9_A General transcriptional 20.6 3.1E+02 0.01 26.3 7.8 55 780-834 31-86 (92)
142 2lw1_A ABC transporter ATP-bin 20.4 5E+02 0.017 23.8 9.7 26 355-380 21-46 (89)
143 3haj_A Human pacsin2 F-BAR; pa 20.1 9.7E+02 0.033 27.8 13.7 137 673-817 99-243 (486)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.65 E-value=4.9e-08 Score=124.23 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517 295 ELLKLQQRVNELKTENEDLNDEKKSLSLRVREL 327 (1286)
Q Consensus 295 ELekLQKklnELQqEIEDLe~Dkk~L~qrLreL 327 (1286)
++..+++.+..+...+..++..+..+...+..|
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.65 E-value=5.7e-08 Score=123.58 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12517 345 EALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQ 424 (1286)
Q Consensus 345 eELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EE 424 (1286)
..+..++..++..+..+...+.+++..+..+..+...+...+ . .+...+.+++..+..|+.++.+++.++.+
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L-----~---~e~~~l~~~e~~l~~l~~~~~~Le~~l~e 931 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL-----Q---AETELYAEAEEMRVRLAAKKQELEEILHE 931 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----T---THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555444 1 11344444455555555555555555555
Q ss_pred HHHHHHHHHHHHHhh
Q psy12517 425 LEAEKLEAEKKCREV 439 (1286)
Q Consensus 425 lE~E~~~~E~k~lrl 439 (1286)
++.++..++.....+
T Consensus 932 le~elee~ee~l~el 946 (1184)
T 1i84_S 932 MEARIEEEEERSQQL 946 (1184)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555444444443
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.48 E-value=0.00042 Score=70.41 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=13.2
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy12517 555 TVLMRDLQDSMEREADLREQLRFAEEER 582 (1286)
Q Consensus 555 k~lqreLqds~Ere~DLkeQLrfaEEe~ 582 (1286)
..+..+++.....-+++..++..++..+
T Consensus 9 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~ 36 (284)
T 1c1g_A 9 QMLKLDKENALDRADEAEADKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445544444444444
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.46 E-value=0.00048 Score=70.01 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=11.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy12517 557 LMRDLQDSMEREADLREQLRFAEEER 582 (1286)
Q Consensus 557 lqreLqds~Ere~DLkeQLrfaEEe~ 582 (1286)
+++.+.-....-+.+..++..++.++
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l 29 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADK 29 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444434344444555555554444
No 5
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=97.05 E-value=0.00012 Score=61.05 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=30.4
Q ss_pred HHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhhh
Q psy12517 800 YEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQT 835 (1286)
Q Consensus 800 yRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~~ 835 (1286)
|||+||+||||+ |++++|+++|++||++++.+
T Consensus 1 ~RKlQrELeEa~----Erae~ae~~vnkLR~k~R~~ 32 (45)
T 3zwh_Q 1 YRKLQRELEDAT----ETADAMNREVSSLKNKLRRG 32 (45)
T ss_dssp CCSSSSHHHHHT----TTHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHH----HHHHHHHHHHHHHHHHhccc
Confidence 689999999999 99999999999999999983
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.31 E-value=1.2 Score=47.19 Aligned_cols=148 Identities=24% Similarity=0.250 Sum_probs=90.9
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 292 TASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKE 371 (1286)
Q Consensus 292 ~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE 371 (1286)
..-+|........++.+.+.+++.++.--..--+.||.. ++..+..+ +..+-.+...+..+..+
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E---------LE~eL~~~-------Ek~~~~L~~~~~~L~~E 71 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE---------LEAQLVQA-------EQRNRDLQADNQRLKYE 71 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777766666666663 23333333 33333333333333333
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHH
Q psy12517 372 LRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVER 451 (1286)
Q Consensus 372 ~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~ 451 (1286)
+..++..+....... .-....|++++..+.+.|+.|..++++++.+.+.+|...-+.. .-
T Consensus 72 ~e~~k~K~~~~~~e~----~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~----------------~S 131 (189)
T 2v71_A 72 VEALKEKLEHQYAQS----YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI----------------MS 131 (189)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----------------hh
Confidence 333333333333322 1234455888999999999999999999999999875443332 34
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q psy12517 452 IQALEKELKLANETAEKLQKDLKE 475 (1286)
Q Consensus 452 I~eLEreLk~akEvs~rLq~eLee 475 (1286)
+.+||..+-.+=|.-.=|..+|++
T Consensus 132 leD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 132 LEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666677665
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.17 E-value=0.49 Score=51.10 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=34.6
Q ss_pred hHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 392 DEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 392 de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
.+|..|.++++.+.+....|+-++.++..+++.++..+..++..+..+.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~ 138 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE 138 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888877777777777777777777776666655544443
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.89 E-value=0.63 Score=50.26 Aligned_cols=59 Identities=7% Similarity=0.032 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 772 TKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 772 ~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
..-|+.-+..+++.+..+|+++.....+...++..++.+. ...+.+..++..+++.+..
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~----~~l~~~~~~l~~~~~~~~~ 150 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK----KEMLELEKLALELESLVEN 150 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3334444477788888888888888888888888888887 5555566666666655544
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.64 E-value=0.63 Score=48.39 Aligned_cols=144 Identities=14% Similarity=0.177 Sum_probs=73.5
Q ss_pred HHHhHHHHhhhhhhhh-hhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh-
Q psy12517 644 LEKSSKITQLEASIRE-ERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM- 721 (1286)
Q Consensus 644 LE~eLeE~q~E~e~~~-~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a- 721 (1286)
|+..+++++.-+..-. +.-|.+|...-+ ...+..+..-++..++.+..++..+..|++++-.|++.|..--..-
T Consensus 11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl----~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~ 86 (168)
T 3o0z_A 11 LQKQLEEANDLLRTESDTAVRLRKSHTEM----SKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRG 86 (168)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333321 233666665400 0123345555566666677777777777777777777764433221
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy12517 722 --TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQER-- 797 (1286)
Q Consensus 722 --Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~KqyKRQlEEaEEea~~~~-- 797 (1286)
.-.|..|++||..|..+|+. +++ ...++..-.+++-..|-.+|.+.+...
T Consensus 87 q~se~~~elq~ri~~L~~El~~------------------~k~--------~~~k~~~e~r~L~Ekl~~lEKe~a~~eid 140 (168)
T 3o0z_A 87 HDSEMIGDLQARITSLQEEVKH------------------LKH--------NLEKVEGERKEAQDMLNHSEKEKNNLEID 140 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------------HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44566677777777766662 221 111112222444444555555555544
Q ss_pred --HHHHHHHhhHhhhhhhhhHH
Q psy12517 798 --QEYEDLTNRYDILEGEHVDI 817 (1286)
Q Consensus 798 --akyRKLQrELEeae~~~vE~ 817 (1286)
-+.+-||..|+-=..+|-+.
T Consensus 141 ~~~eLKalQ~~~eqE~~~H~~T 162 (168)
T 3o0z_A 141 LNYKLKSLQQRLEQEVNEHKVT 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777776544444444
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.27 E-value=1.6 Score=46.22 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12517 363 DENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELE-QTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCG 441 (1286)
Q Consensus 363 EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLh-eleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~ 441 (1286)
+++...+....++...+.+++..| ++|++--|+|+ ++++..-.++-+.+.++.++.++..++..+-.|+....
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El-----~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~- 83 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDEL-----VEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY- 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444455555555555555555555 55544444443 24444444444444555555555555555555665554
Q ss_pred CCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12517 442 GMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLE 481 (1286)
Q Consensus 442 ~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekle 481 (1286)
......|..|+.+|.........|+..|+.+|-.-+
T Consensus 84 ----~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ND 119 (189)
T 2v71_A 84 ----AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND 119 (189)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112235788888888888888888887777765443
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.02 E-value=0.83 Score=64.38 Aligned_cols=163 Identities=12% Similarity=0.155 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHH
Q psy12517 336 KSNAAEREAEALR---TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILS 412 (1286)
Q Consensus 336 k~eEld~sieELR---TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq 412 (1286)
+..++......+. .+|..+....++++.+|..++.++.+...+.+.+...+ .++-.++++.....+
T Consensus 1911 K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i-----------~~~~~~ae~~k~~v~ 1979 (3245)
T 3vkg_A 1911 KRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM-----------VQDQQAAEIKQKDAR 1979 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 4455555555665 66666677777777777777777777666666665555 222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy12517 413 FKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLG 492 (1286)
Q Consensus 413 ~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekle~e~~~~~~~l~ 492 (1286)
..-.++..+.+++.+.+...+..+...+- -.-.-+.++++|.+|..+++.-...+.+|.+++++++.....-
T Consensus 1980 ~~~~~~~~~~~ei~~~k~~~e~dL~~A~P---a~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~----- 2051 (3245)
T 3vkg_A 1980 ELQVQLDVRNKEIAVQKVKAYADLEKAEP---TGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEY----- 2051 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 33333333333333333333333333220 0112245677888887777777777777777777775443222
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHhc
Q psy12517 493 ALPKTPSVETAEKLQKDLKEATDKLERAN 521 (1286)
Q Consensus 493 ~~~~~~a~~~kkKLE~dL~ElE~kle~an 521 (1286)
..+...+..|+.++...+.+++.|.
T Consensus 2052 ----~~~~~ek~~L~~e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A 2052 ----ATLIRETEQIKTESSKVKNKVDRSI 2076 (3245)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1556677778888888888887776
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.99 E-value=0.44 Score=61.19 Aligned_cols=40 Identities=20% Similarity=0.118 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
..++..+.|.+..|+.+...++ ++++..+.++++....|.
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333 233344444444444443
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.69 E-value=1.1 Score=46.72 Aligned_cols=120 Identities=19% Similarity=0.234 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhH-------HHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 676 SRELNQLREELTQLKKEAQRNA-------EKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKAL 748 (1286)
Q Consensus 676 e~q~~qL~eEL~~Eqe~~QklE-------~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~e 748 (1286)
+.|+.-+.+-|+.|-+.++++- ....++|..+.||+.++.-+++. -..|+.-+..|..+|+.|.+
T Consensus 12 ekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~----k~~Leke~~~LQa~L~qEr~---- 83 (168)
T 3o0z_A 12 QKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENS----KSQTDKDYYQLQAILEAERR---- 83 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----
Confidence 3356666666666666665542 12224444444444444333322 33444444444444444444
Q ss_pred HHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHH
Q psy12517 749 KEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENN 828 (1286)
Q Consensus 749 a~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kL 828 (1286)
+..+..+++.-|...+.-+++++.+...++.++.-+--.+. +.-..++.+.+++
T Consensus 84 ----------------------~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~----Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 84 ----------------------DRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQ----DMLNHSEKEKNNL 137 (168)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhh
Confidence 34445555555555555566666665555555555555555 5555555665555
Q ss_pred H
Q psy12517 829 H 829 (1286)
Q Consensus 829 r 829 (1286)
.
T Consensus 138 e 138 (168)
T 3o0z_A 138 E 138 (168)
T ss_dssp H
T ss_pred h
Confidence 5
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.44 E-value=0.7 Score=59.35 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
.++.+.++..+-.|+. .++.++..|+.+.+.++.++.+++
T Consensus 1004 ~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1004 QTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444442 333555555555555555555553
No 15
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.29 E-value=3.6 Score=42.33 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 727 DLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLT 804 (1286)
Q Consensus 727 kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQ 804 (1286)
..+++|.+||++|..-. .-+|.|..+.+. .--+.|.+.++.+..++.+||.-+.-......+|+
T Consensus 39 ~aE~k~~eLEeeL~~v~--------------~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLE 104 (155)
T 2efr_A 39 LSEGKSAELEEELKTVT--------------NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE 104 (155)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665554322 344444333332 12345666667777777777777777777777788
Q ss_pred hhHhhhh
Q psy12517 805 NRYDILE 811 (1286)
Q Consensus 805 rELEeae 811 (1286)
..+++++
T Consensus 105 k~id~lE 111 (155)
T 2efr_A 105 KSIDDLE 111 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777777
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.99 E-value=0.57 Score=46.24 Aligned_cols=94 Identities=23% Similarity=0.379 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHH-------HHHhhHHHhhhh----------hhhHHHHHHHHHHHHHH
Q psy12517 676 SRELNQLREELTQLKKEAQRNAEKVTKLERDKTS-------LEENLKSKETQM----------TKTISDLQTKCSTLEKS 738 (1286)
Q Consensus 676 e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKE-------Lq~RL~E~Es~a----------Kk~I~kLEaRI~eLEee 738 (1286)
+.++..+..++...+...++.+..++.|+.++.. |+..|+..-... .+.-..|+.+|.+|+..
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~r 91 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKR 91 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777776666666665554444 443332221111 24456778888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhhccc
Q psy12517 739 LTAEQKQKALKEKELKTKESEINVLKNQSSD 769 (1286)
Q Consensus 739 Le~EqRek~ea~K~~RK~ERrIKEL~~Q~ee 769 (1286)
|+.+.-.........++++..|.+|..++++
T Consensus 92 leeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 92 LEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888777765
No 17
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.76 E-value=7.1 Score=40.21 Aligned_cols=89 Identities=10% Similarity=0.093 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12517 344 AEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSE 423 (1286)
Q Consensus 344 ieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~E 423 (1286)
......++..+...+.+-.......+.....+..|+++|..++++|==.-+..-+++-|.+++-.+.|+-++...+..++
T Consensus 53 ~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 53 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777788889999999999999999996655444444455555555555555555555555555
Q ss_pred HHHHHHHHH
Q psy12517 424 QLEAEKLEA 432 (1286)
Q Consensus 424 ElE~E~~~~ 432 (1286)
-++..+..+
T Consensus 133 ~lq~ql~~L 141 (154)
T 2ocy_A 133 TLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.50 E-value=6.1 Score=56.08 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=8.1
Q ss_pred Ccchhhhhhhh
Q psy12517 24 WPTRCKRCFRD 34 (1286)
Q Consensus 24 ~~~~~~~~~~~ 34 (1286)
|---|-|.|+|
T Consensus 1542 W~HE~~RVF~D 1552 (3245)
T 3vkg_A 1542 WAHEALRLFQD 1552 (3245)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 66677888876
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.47 E-value=1.9 Score=44.26 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=43.7
Q ss_pred HhHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 701 TKLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKALKEKELK 754 (1286)
Q Consensus 701 k~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~R 754 (1286)
..++.++|.|..+|.++++-+ -+.|++|+.-|..||..|..+...+..+...+.
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999887 688999999999999999977665544444333
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.52 E-value=1.3 Score=51.81 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=12.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 402 EQTAKNCRILSFKLRKSERRSEQLEAEKLE 431 (1286)
Q Consensus 402 heleKncRiLq~kLrKaerk~EElE~E~~~ 431 (1286)
+.+++.+..|+-++++++.++.++.++.+.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 333333344444444444444444444333
No 21
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.40 E-value=12 Score=36.92 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy12517 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEA 427 (1286)
Q Consensus 349 TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~ 427 (1286)
.++..+...++.......+++..+..+..++.++..++.- +.+-+.+.---++.+.+.+-.|+.++..+..++++.|+
T Consensus 20 eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~-E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee 97 (129)
T 2fxo_A 20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQA-EQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555666666666666666666611 11111111222333444444444444444444444433
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.37 E-value=1 Score=52.85 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy12517 724 TISDLQTKCSTLEKSLT 740 (1286)
Q Consensus 724 ~I~kLEaRI~eLEeeLe 740 (1286)
.+++++.++..++.++.
T Consensus 510 ~~~~~~~~~~~~~~~~~ 526 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQ 526 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHH
Confidence 33444444444443333
No 23
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.46 E-value=16 Score=35.93 Aligned_cols=68 Identities=26% Similarity=0.290 Sum_probs=50.9
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy12517 393 EYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKD 472 (1286)
Q Consensus 393 e~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~e 472 (1286)
....|+++|..+...++.|...+|+++.+.+.+|-.--+.- .-|.+||..+-.|=|..+=|..+
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~----------------~SLeD~E~k~n~aiErnalLE~E 99 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI----------------VSLEDFEQRLNQAIERNAFLESE 99 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH----------------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45567999999999999999999999999999874322211 34577777777777777777777
Q ss_pred HHHH
Q psy12517 473 LKEA 476 (1286)
Q Consensus 473 Leel 476 (1286)
|++=
T Consensus 100 l~EK 103 (111)
T 2v66_B 100 LDEK 103 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 24
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.70 E-value=22 Score=33.84 Aligned_cols=38 Identities=8% Similarity=0.114 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKK 435 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k 435 (1286)
...+.+++..|-.++.++.-+.+++..+|+++..++..
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444333
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.42 E-value=22 Score=42.69 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=44.1
Q ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CcccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy12517 397 LKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGM--EGVNKVERIQALEKELKLANETAEKLQKDLK 474 (1286)
Q Consensus 397 L~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~--~gv~~~~~I~eLEreLk~akEvs~rLq~eLe 474 (1286)
|+..|...-.++|.||.-|+++--++.+||-....--..|.--+.-. +-|+. +-=+.+|+||+
T Consensus 122 LKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~---------------~sY~~~QKQLe 186 (562)
T 3ghg_A 122 LKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDL---------------KDYEDQQKQLE 186 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCH---------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecch---------------HHHHHHHHHHH
Confidence 35555555588899999999999999998876665322222211100 34444 55667899999
Q ss_pred HHHHH
Q psy12517 475 EATDK 479 (1286)
Q Consensus 475 elEek 479 (1286)
+|.++
T Consensus 187 Qv~a~ 191 (562)
T 3ghg_A 187 QVIAK 191 (562)
T ss_dssp HHHTT
T ss_pred HHhhc
Confidence 99754
No 26
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=84.87 E-value=8.4 Score=39.15 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=52.1
Q ss_pred HHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhh
Q psy12517 643 ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMT 722 (1286)
Q Consensus 643 qLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aK 722 (1286)
.....|.++...+.-+. |..+...+-....+.-+..|..+|...+..+...+..-....+++.-++..|..++.-
T Consensus 21 ~a~~kLeeaek~adE~e---R~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeR-- 95 (147)
T 2b9c_A 21 TALQKLEEAEKAADESE---RGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER-- 95 (147)
T ss_dssp HHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--
Confidence 33444444444444443 6666655333334455667777777777666666555556666666666666655544
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy12517 723 KTISDLQTKCSTLEKSLT 740 (1286)
Q Consensus 723 k~I~kLEaRI~eLEeeLe 740 (1286)
....+++|.+||++|.
T Consensus 96 --ae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 96 --AELSEGKCAELEEELK 111 (147)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHH
Confidence 3344666666666654
No 27
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=84.08 E-value=4.5 Score=40.01 Aligned_cols=99 Identities=21% Similarity=0.375 Sum_probs=44.8
Q ss_pred HHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHH
Q psy12517 703 LERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQY 782 (1286)
Q Consensus 703 LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~Kqy 782 (1286)
|-+.|-.|+..|..+-..+...|..|+.+|..||.+|+.-...+..|.-.+..+--.+..+..+..+.. ..
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~---------~~ 90 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTE---------KA 90 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---------HH
Confidence 334456666666666555567899999999999999998777766666655555555554444333311 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy12517 783 EQEIKKLEDTLVQERQEYEDLTNRYDIL 810 (1286)
Q Consensus 783 KRQlEEaEEea~~~~akyRKLQrELEea 810 (1286)
.+.+.|+|..++....+|-||...|-++
T Consensus 91 q~~~~e~E~kAqa~Eerf~KLKe~yteL 118 (120)
T 3i00_A 91 QRSLSEIERKAQANEQRYSKLKEKYSEL 118 (120)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2347788888888889999998877664
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.58 E-value=13 Score=36.42 Aligned_cols=82 Identities=15% Similarity=0.253 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q psy12517 679 LNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKS-------LTAEQKQKALKEK 751 (1286)
Q Consensus 679 ~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEee-------Le~EqRek~ea~K 751 (1286)
+....+|+..-+.++|.++..-..|..++..|+..|.+++...-..+..+.++|..||.+ +....++....--
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666666666666666666655433444444444444444 4444444444444
Q ss_pred HHHhhhhHH
Q psy12517 752 ELKTKESEI 760 (1286)
Q Consensus 752 ~~RK~ERrI 760 (1286)
.+-.+|-+|
T Consensus 111 vKl~Ld~EI 119 (129)
T 3tnu_B 111 TKLALDVEI 119 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 29
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.26 E-value=36 Score=33.25 Aligned_cols=97 Identities=12% Similarity=0.229 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 297 LKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKK-SNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYL 375 (1286)
Q Consensus 297 ekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk-~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KEL 375 (1286)
..++..+..|..+|+++..++..+...+.++..-...|.. .+.--.....+...+..+...+++..-..-+|+..++.|
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777776665554431 111111122233445555566666666666677777777
Q ss_pred HHHHHHHHhhhhhhhhhHH
Q psy12517 376 EEEMDEMQDHFREDQADEY 394 (1286)
Q Consensus 376 ReEmEELrDs~rEe~~de~ 394 (1286)
.+|+.=|+..+ ++++.++
T Consensus 96 ~eEl~FLKk~h-eeEl~eL 113 (119)
T 3ol1_A 96 QEEIAFLKKLH-EEEIQEL 113 (119)
T ss_dssp HHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHH
Confidence 77777666555 4444433
No 30
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.10 E-value=12 Score=36.77 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 679 LNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKT-------ISDLQTKCSTLEKSLTAEQKQKALKEK 751 (1286)
Q Consensus 679 ~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~-------I~kLEaRI~eLEeeLe~EqRek~ea~K 751 (1286)
+....+|+..-+.++|.++..-..|..++.-|+..|.+++...-.. |..||+-+..+-.++....++.+..--
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666665555555555555555555555444333 444444444444444444444444444
Q ss_pred HHHhhhhHH
Q psy12517 752 ELKTKESEI 760 (1286)
Q Consensus 752 ~~RK~ERrI 760 (1286)
.+-.+|-+|
T Consensus 113 vKl~Ld~EI 121 (131)
T 3tnu_A 113 VKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 31
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.74 E-value=24 Score=34.66 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=32.3
Q ss_pred CcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12517 289 SKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEA 331 (1286)
Q Consensus 289 ~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQ 331 (1286)
-.++-.++..+...+..|+.+|+.+...+..+...+..++...
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888888888888777754
No 32
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.32 E-value=57 Score=33.64 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy12517 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSD 275 (1286)
Q Consensus 246 ~~~~~~i~~lr~el~~~k~rce~~e~eks~ 275 (1286)
..|.+.+..+|.+|...+.|...+|..+..
T Consensus 16 s~LeD~L~~~R~el~~~~~ri~~lE~~r~~ 45 (154)
T 2ocy_A 16 SHLEEQLNKSLKTIASQKAAIENYNQLKED 45 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999888887765
No 33
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=79.58 E-value=35 Score=33.34 Aligned_cols=30 Identities=10% Similarity=0.316 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12517 452 IQALEKELKLANETAEKLQKDLKEATDKLE 481 (1286)
Q Consensus 452 I~eLEreLk~akEvs~rLq~eLeelEekle 481 (1286)
|..|=++|..+.=.++-|..+++.|.+++.
T Consensus 71 i~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 71 LQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555566677777777777664
No 34
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=78.55 E-value=46 Score=31.49 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=14.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 402 EQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKK 435 (1286)
Q Consensus 402 heleKncRiLq~kLrKaerk~EElE~E~~~~E~k 435 (1286)
..+.|-+..|+..+.+++.++..+-..+...+..
T Consensus 47 ~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~ 80 (101)
T 3u59_A 47 QGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKK 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333333333
No 35
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.51 E-value=15 Score=36.37 Aligned_cols=78 Identities=13% Similarity=0.242 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHH
Q psy12517 340 AEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSE 419 (1286)
Q Consensus 340 ld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKae 419 (1286)
....+..++..+..++..+++.......+.-++..|+.+++.+.... -+.-.+.+.+.++++--..-+.+..|++
T Consensus 38 ~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~-----~~~~~~q~~~~e~E~kAqa~Eerf~KLK 112 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQR-----EDTEKAQRSLSEIERKAQANEQRYSKLK 112 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----C---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557778888888888888888888888888999999999887777 4443446677777776666666666665
Q ss_pred HHH
Q psy12517 420 RRS 422 (1286)
Q Consensus 420 rk~ 422 (1286)
..-
T Consensus 113 e~y 115 (120)
T 3i00_A 113 EKY 115 (120)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 36
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=78.30 E-value=32 Score=33.82 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy12517 677 RELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQK 744 (1286)
Q Consensus 677 ~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqR 744 (1286)
.+.++|+.++++.+..+.++-..++.|+.. +.+.-...+++|+.|..++..-|..|..-++
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~-------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq 66 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDF-------IKQSSEDSSHQISALVLRAQASEILLEELQQ 66 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888999888888888887777777766 3333333478888888888888866654433
No 37
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.82 E-value=19 Score=34.60 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh----hhhHHHHHHHHHHHHHHHH
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM----TKTISDLQTKCSTLEKSLT 740 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a----Kk~I~kLEaRI~eLEeeLe 740 (1286)
.+.+|..+|..++.....+|..+..++..+-+|.+-|.+-=..| ++.-..++-|+..|..+|.
T Consensus 27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 27 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788999999999999999999999999999999987765544 4555566666666666654
No 38
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.35 E-value=21 Score=35.17 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=27.5
Q ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12517 290 KTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEA 331 (1286)
Q Consensus 290 ~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQ 331 (1286)
.++-++|..+...+..|+.+|+.+...+..+...+..++...
T Consensus 34 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 34 QSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445667788888888888888888777777777777777753
No 39
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.10 E-value=50 Score=31.20 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy12517 418 SERRSEQLEAEKLE 431 (1286)
Q Consensus 418 aerk~EElE~E~~~ 431 (1286)
.+....++|++..+
T Consensus 77 ~ek~~~~AE~evas 90 (101)
T 3u59_A 77 AEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 40
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.33 E-value=54 Score=31.62 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHH
Q psy12517 350 KLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRIL 411 (1286)
Q Consensus 350 KLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiL 411 (1286)
++..+...+.+-......++.++..+..|+++|..+++++==.-|..-+++-|.+++-.+.|
T Consensus 27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L 88 (97)
T 2eqb_B 27 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRL 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666777788888888888888885443333333333333333333333
No 41
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=74.96 E-value=17 Score=36.72 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=22.0
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHhhhcC
Q psy12517 931 RKGSLYRKSLSLEQTSQLAQEENIWKMTD 959 (1286)
Q Consensus 931 el~s~r~~~Ls~Ere~IlErIeq~ek~kk 959 (1286)
+..+-+++ |.-|++++-+++..|+.+..
T Consensus 137 E~MdSFE~-LkvENE~vkerl~mYR~QRf 164 (167)
T 4gkw_A 137 ENMDSFEK-LSMENENLKEKIAHYRAQRF 164 (167)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHH-HhhhhHhHHHHHHHHHHhcc
Confidence 34445666 99999999999999997754
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.43 E-value=21 Score=35.95 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 351 LAAAEGLCEELMDENEEMKKELRYLEEE 378 (1286)
Q Consensus 351 LlsLE~alEEL~EeLEELKrE~KELReE 378 (1286)
++.+...++.+..+++.+.+++-.|..+
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~e 97 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHE 97 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444333333333333
No 43
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=73.82 E-value=63 Score=30.73 Aligned_cols=35 Identities=20% Similarity=0.078 Sum_probs=14.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 402 EQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKC 436 (1286)
Q Consensus 402 heleKncRiLq~kLrKaerk~EElE~E~~~~E~k~ 436 (1286)
..++|-+..|+-.|.+++.++.++-..+...+...
T Consensus 47 ~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~ 81 (101)
T 3u1c_A 47 VQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333333333
No 44
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.59 E-value=7 Score=39.51 Aligned_cols=78 Identities=9% Similarity=0.082 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12517 347 LRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQ 424 (1286)
Q Consensus 347 LRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EE 424 (1286)
...++..+...+.+-......++.+...+..|+++|..+++++==.-+..-+++-|.+++-...|+-++...+..++-
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~ 121 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDT 121 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555666666666777778888899999999999999955443333333444444444444444444443333333
No 45
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=71.77 E-value=27 Score=32.20 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=45.3
Q ss_pred HHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy12517 694 QRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINV 762 (1286)
Q Consensus 694 QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKE 762 (1286)
+.+...+.+||.++.+++.+..-.-......|..||+-+..+-.++....++.+..-..+-++|-+|..
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIat 72 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIAT 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344555667777777777776554444456677777777777777776677777666666666666653
No 46
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=69.68 E-value=74 Score=29.85 Aligned_cols=83 Identities=18% Similarity=0.362 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 298 KLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK-------------KSNAAEREAEALRTKLAAAEGLCEELMDE 364 (1286)
Q Consensus 298 kLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd-------------k~eEld~sieELRTKLlsLE~alEEL~Ee 364 (1286)
.+.+.+.++..+|..+...+..+...+..+.+....+. --......+..+..++..+...+..+...
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~ 86 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555444221 11122233445555555555555555666
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12517 365 NEEMKKELRYLEEEMD 380 (1286)
Q Consensus 365 LEELKrE~KELReEmE 380 (1286)
+..++.++..+..++.
T Consensus 87 i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 87 KSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6655555555555544
No 47
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=68.05 E-value=6.5 Score=47.34 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 366 EEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 366 EELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
+.++++..+|...+..+.+.+ ... +.+|.+.+...+.|+-+++.++...+.|+.....+|....+|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~ 397 (575)
T 2i1j_A 331 ERAEKKQQEYQDRLRQMQEEM-----ERS---QANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLE 397 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHC---------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHH-----HHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444 333 5666777777778888888888888888887777777777765
No 48
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=65.85 E-value=35 Score=31.10 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy12517 369 KKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 369 KrE~KELReEmEELrDs~ 386 (1286)
+..+..|+.+.+...+.+
T Consensus 5 kkKm~~lk~e~d~a~~~~ 22 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRA 22 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 49
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=64.43 E-value=2.5e+02 Score=34.07 Aligned_cols=106 Identities=9% Similarity=0.052 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q psy12517 723 KTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDT----LVQERQ 798 (1286)
Q Consensus 723 k~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~KqyKRQlEEaEEe----a~~~~a 798 (1286)
.+|...-..+.+-|.+++.|+.++..+.+..+.++-+.+++...++. +-..+++.++|++.++++=.+. ..+.+.
T Consensus 473 ~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~-~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~ 551 (592)
T 1f5n_A 473 DAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQ-KERSYQEHLKQLTEKMENDRVQLLKEQERTLA 551 (592)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544445556667778888888888888888888777776655554 2334455555544433332221 122211
Q ss_pred HHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHh
Q psy12517 799 EYEDLTNRYDILEGEHVDIKASLVKEKENNHGR 831 (1286)
Q Consensus 799 kyRKLQrELEeae~~~vE~ad~lE~ev~kLrsk 831 (1286)
. +|+-+-+-+.+-+-.-+..|..+++.|+..
T Consensus 552 ~--~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 552 L--KLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp H--HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 222222223333446677777788877765
No 50
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=63.74 E-value=12 Score=37.56 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh---h----hhHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy12517 680 NQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM---T----KTISDLQTKCSTLEKSLTAEQKQKAL---- 748 (1286)
Q Consensus 680 ~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a---K----k~I~kLEaRI~eLEeeLe~EqRek~e---- 748 (1286)
..|-.||.+-++..-..+.+++.|+.....+..++.-+++.. + -+|.+|+=.+..+|..|-.|+.--.+
T Consensus 5 tSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrk 84 (130)
T 3cl3_D 5 SGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRK 84 (130)
T ss_dssp ----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777776665554 2 45677777777777777766553322
Q ss_pred -------HHHHHHhhhhHHHHhhhhcccchHHHHHHHHHH
Q psy12517 749 -------KEKELKTKESEINVLKNQSSDNVTKQITELKTQ 781 (1286)
Q Consensus 749 -------a~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~Kq 781 (1286)
-.+.+.-|+-.||-...+.+-..--+++|++.+
T Consensus 85 LAqLQ~AY~~LfqeYd~~lK~~~~~~e~~~~~ql~dL~qq 124 (130)
T 3cl3_D 85 LAQLQVAYHQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQ 124 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHH
Confidence 456667777777777655554223466666655
No 51
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=63.57 E-value=6.5 Score=47.35 Aligned_cols=114 Identities=12% Similarity=0.203 Sum_probs=24.0
Q ss_pred HHHHhHHHhHHHHHHhhHHHhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chH
Q psy12517 698 EKVTKLERDKTSLEENLKSKETQMTKT---ISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVT 772 (1286)
Q Consensus 698 ~~rk~LE~qvKELq~RL~E~Es~aKk~---I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~ 772 (1286)
..|...|+...+|+.+|..++..+++. ....+.++..|++++.-.+.+.....+....+|.....|..+... ..-
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~ 407 (575)
T 2i1j_A 328 AARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAER 407 (575)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444556666777777777777766433 444467777788777766666666666666666666666555443 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy12517 773 KQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILE 811 (1286)
Q Consensus 773 ~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae 811 (1286)
.+|......+...+.-++++..+-...-++||.++..|.
T Consensus 408 ~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~ 446 (575)
T 2i1j_A 408 QKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDAR 446 (575)
T ss_dssp ----------------------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222333333333444444555666555554
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.24 E-value=77 Score=29.67 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 351 LAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 351 LlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
-..+....+++....+.+.+++.+|+.|...+++.+
T Consensus 36 N~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 36 NNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666667777777777777777766
No 53
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=61.16 E-value=1.3e+02 Score=29.58 Aligned_cols=58 Identities=24% Similarity=0.149 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANE 464 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akE 464 (1286)
+..-+.+.+-+|-|++.--.++|+-=-.-.-++..|.++-..- ...+=||.+|.+-+.
T Consensus 48 r~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ai---------ErnalLE~El~EKe~ 105 (111)
T 2v66_B 48 RAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAI---------ERNAFLESELDEKES 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 3333444455555555555555554444444555555554432 334556666654333
No 54
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.18 E-value=1.3e+02 Score=36.32 Aligned_cols=56 Identities=9% Similarity=0.041 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhh
Q psy12517 774 QITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQ 833 (1286)
Q Consensus 774 rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr 833 (1286)
.+.+....|+|++..++++++.+.+..+-||.-|+++- .-...||..+....--|+
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~----~kIQRLEvDIdiqirsCK 162 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL----VDMKRLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcc
Confidence 34444468889999999999999999999999999987 555667777665444454
No 55
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=60.15 E-value=33 Score=31.83 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=35.4
Q ss_pred HHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy12517 699 KVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEIN 761 (1286)
Q Consensus 699 ~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIK 761 (1286)
.+..||.++.+++.+..-.-......|..||+.+..+-.++....++.+..-..+-++|-+|.
T Consensus 11 q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 11 QLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334566666666665543333334556666666666666666666666665555555555554
No 56
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=59.88 E-value=28 Score=33.07 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=37.1
Q ss_pred HhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy12517 695 RNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEIN 761 (1286)
Q Consensus 695 klE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIK 761 (1286)
.++..+..||.++.+++.+....-......|..||+.+..+..++....++....-..+-.+|-+|.
T Consensus 16 ~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 16 QGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666544433334556666666666666666555655555555555555554
No 57
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.55 E-value=21 Score=36.16 Aligned_cols=61 Identities=16% Similarity=0.293 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh----hhhHHHHHHHHHHHHHH
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM----TKTISDLQTKCSTLEKS 738 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a----Kk~I~kLEaRI~eLEee 738 (1286)
++.+|..+|..|+..-...|..+..++..+-+|.+-|.+-=..| ++.-..++-|+..|+.+
T Consensus 47 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~q 111 (135)
T 2e7s_A 47 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQ 111 (135)
T ss_dssp HHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888998888899999999999999998887654444 33344444444444433
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.01 E-value=92 Score=35.77 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhh
Q psy12517 772 TKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQ 833 (1286)
Q Consensus 772 ~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr 833 (1286)
...++...++|.....+.|.+..+..+-....|.+.+.+. +.++.++.++..+...+.
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLA----EENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHH----HHhhhhhhhhhhhhhhhH
Confidence 4445556666666666666665555555555555555555 445555555554444433
No 59
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=56.98 E-value=68 Score=31.53 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 344 AEALRTKLAAAEGLCEELMDENEEMKKELRYLEE 377 (1286)
Q Consensus 344 ieELRTKLlsLE~alEEL~EeLEELKrE~KELRe 377 (1286)
+..|..+|..++.++...+..+++++.++..++.
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777666
No 60
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=56.38 E-value=1.1e+02 Score=27.80 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy12517 348 RTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEA 427 (1286)
Q Consensus 348 RTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~ 427 (1286)
..++..++...+.+.+..+.++..++......... .-+|..++|-...|+-.|.+++.++..+..
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~---------------E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQL---------------EDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444333222 233344455555555555555555555544
Q ss_pred HHHHH
Q psy12517 428 EKLEA 432 (1286)
Q Consensus 428 E~~~~ 432 (1286)
.+...
T Consensus 70 kLeea 74 (81)
T 1ic2_A 70 KLELA 74 (81)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 61
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=55.86 E-value=1e+02 Score=28.70 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhh
Q psy12517 675 ASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENL 714 (1286)
Q Consensus 675 ~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL 714 (1286)
++.++..+..++..-++..++.+..++.|+.++..|....
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek 51 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQK 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888888888777777666655543
No 62
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=53.67 E-value=1.3e+02 Score=27.85 Aligned_cols=33 Identities=9% Similarity=0.251 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q psy12517 452 IQALEKELKLANETAEKLQKDLKEATDKLERAN 484 (1286)
Q Consensus 452 I~eLEreLk~akEvs~rLq~eLeelEekle~e~ 484 (1286)
+..|=+++..+.=.++-|..+|+++.+++..-.
T Consensus 51 ~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 51 LQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455556666677888888888888876543
No 63
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.38 E-value=1.5e+02 Score=27.69 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh------------------hhhHHHHHHHHHHHHHHH
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM------------------TKTISDLQTKCSTLEKSL 739 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a------------------Kk~I~kLEaRI~eLEeeL 739 (1286)
+.-.+...+..-+...+.+......|+.++.++..-+.+++..- ...+..|+.++..++..+
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i 86 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRL 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777888888888888887776321 356777788888888777
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhh
Q psy12517 740 TAEQKQKALKEKELKTKESEINVLK 764 (1286)
Q Consensus 740 e~EqRek~ea~K~~RK~ERrIKEL~ 764 (1286)
..-........+.+..+...+.++.
T Consensus 87 ~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 87 NALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666666666666666665544
No 64
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=51.61 E-value=1.6e+02 Score=27.82 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=14.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQL 425 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EEl 425 (1286)
.+.+-+...-...|..++.=+..+++.|
T Consensus 66 ~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 66 KRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555544443
No 65
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=51.50 E-value=1.8e+02 Score=34.59 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=8.7
Q ss_pred HHHhHHHHHHhhHHHhh
Q psy12517 703 LERDKTSLEENLKSKET 719 (1286)
Q Consensus 703 LE~qvKELq~RL~E~Es 719 (1286)
++..+.+|+.+|++++.
T Consensus 98 V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhh
Confidence 33445555555555543
No 66
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=48.78 E-value=1.6e+02 Score=27.33 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy12517 363 DENEEMKKELRYLEEEMDEMQD 384 (1286)
Q Consensus 363 EeLEELKrE~KELReEmEELrD 384 (1286)
....+++..+..|-.+..++..
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ 56 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFG 56 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444333333
No 67
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=47.75 E-value=2.4e+02 Score=28.64 Aligned_cols=104 Identities=21% Similarity=0.317 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 361 LMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 361 L~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle 440 (1286)
+...++.+.++.++.+.|++-.-..++||+ +-+..|+|----..|..-.|-.++.-++|.++.++.-+...-. ..-+
T Consensus 16 L~~D~~s~~~eleEnqeEL~iVgkML~EEq-gKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~--qQnQ 92 (167)
T 4gkw_A 16 LKQDTESLQKQLEENQEELEIVGNMLREEQ-GKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQ--QQNQ 92 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhH--HHhH
Confidence 334444444555555555555444444433 2222224433333455666666677777777777655443211 1111
Q ss_pred cCCCcccHHHHHHHHHHHHHHhHHHHHHHHH
Q psy12517 441 GGMEGVNKVERIQALEKELKLANETAEKLQK 471 (1286)
Q Consensus 441 ~~~~gv~~~~~I~eLEreLk~akEvs~rLq~ 471 (1286)
-++ +.-.+++||.+|++-.-.--.|-.
T Consensus 93 ---QSl-DiRKLrELEADLKEKDsMVe~LT~ 119 (167)
T 4gkw_A 93 ---QSL-DMRKLGELEADLKEKDSMVESLTE 119 (167)
T ss_dssp ---HHH-HHHHTHHHHHTHHHHHHHHHHHHH
T ss_pred ---hhh-hHHHHHHHHhHHhhhhHHHHHHHH
Confidence 011 224568889888664433333333
No 68
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=46.77 E-value=1.1e+02 Score=28.49 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Q psy12517 355 EGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERR 421 (1286)
Q Consensus 355 E~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk 421 (1286)
...+.....+++.+++...+|..--.-+.+-+ ..|.++-.++.+||.+|..+..+++..
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi--------~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMV--------TRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666655444444444 333888888899999998888777643
No 69
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.80 E-value=1.9e+02 Score=27.00 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q psy12517 723 KTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLK 764 (1286)
Q Consensus 723 k~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~ 764 (1286)
+.+..++..+.++..+|..-..........+..+++.+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444445555555555444445555555555555555553
No 70
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=44.98 E-value=6.6 Score=44.60 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=11.2
Q ss_pred cCCccccchhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhcCCcchhhhhhHhHHH----HHHhhcC
Q psy12517 914 VSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSIDD----AYENVKY 980 (1286)
Q Consensus 914 VNM~Ai~Eyd~V~~rl~el~s~r~~~Ls~Ere~IlErIeq~ek~kkd~~sfM~sfeaInk----If~~LS~ 980 (1286)
.++.|+.+|+.+..++..+...+.. +..+...+.+.++.+.+...+ .|+.+|+.|+. +|..|..
T Consensus 222 ~~~~a~ee~e~l~e~l~~l~~~l~~-~r~~~~~l~~~i~~L~~~r~~--~~~~~~~~i~~~~~~~~~~l~~ 289 (430)
T 1w1w_A 222 FQGPRGSRYDEAEGRFEVINNETEQ-LKAEEKKILNQFLKIKKKRKE--LFEKTFDYVSDHLDAIYRELTK 289 (430)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 4668889999999999999988888 787887788888888888888 69999999986 8888874
No 71
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.97 E-value=2.4e+02 Score=28.07 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHH
Q psy12517 682 LREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLE 736 (1286)
Q Consensus 682 L~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLE 736 (1286)
|..+|++.|+.....|..--.-+++|..|..-|.+.-+..-+.|++|+..|..|.
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Ln 84 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLN 84 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666665555555555666666666665544443223444444443333
No 72
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=44.95 E-value=33 Score=28.61 Aligned_cols=28 Identities=32% Similarity=0.410 Sum_probs=19.0
Q ss_pred hHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy12517 702 KLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLT 740 (1286)
Q Consensus 702 ~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe 740 (1286)
.||..+|+|+.+ .+.||.||+.|+.+..
T Consensus 7 eLE~r~k~le~~-----------naeLEervstLq~EN~ 34 (42)
T 2oqq_A 7 ELENRVKDLENK-----------NSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHhHH
Confidence 466667777766 5666777888776544
No 73
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=44.78 E-value=2e+02 Score=26.78 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=41.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 304 NELKTENEDLNDEKKSLSLRVRELETEAAAFK-KSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEM 382 (1286)
Q Consensus 304 nELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd-k~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEEL 382 (1286)
.+|..+|+.+..++..+...+.++..-...|. +.++--.....+...+..+...++++.-..-+|+..++.|..|+.=|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666665555554443332 11110111122224455556666666666666666777676666554
Q ss_pred H
Q psy12517 383 Q 383 (1286)
Q Consensus 383 r 383 (1286)
+
T Consensus 83 k 83 (86)
T 3swk_A 83 K 83 (86)
T ss_dssp T
T ss_pred h
Confidence 3
No 74
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=44.63 E-value=2.2e+02 Score=27.28 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12517 682 LREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKES 758 (1286)
Q Consensus 682 L~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ER 758 (1286)
|+.-|...+...+-----+..|-.|.++|+.-|..+++.. .+-|..|++||.+.=.-|+-|.=-+-+...-+.|.|+
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEK 81 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEK 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhh
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.16 E-value=3.7e+02 Score=30.79 Aligned_cols=35 Identities=14% Similarity=-0.024 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEA 432 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~ 432 (1286)
+.+..++.+..-.|+-.++++.-++.++.+.++.+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 44444444555555566666666666665555544
No 76
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.08 E-value=2e+02 Score=26.79 Aligned_cols=38 Identities=8% Similarity=0.188 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 295 ELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAA 332 (1286)
Q Consensus 295 ELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQK 332 (1286)
++..+...++.+++++..+...+..+...+..++.-..
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~ 44 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALD 44 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555565666665555555555555554433
No 77
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.30 E-value=1.2e+02 Score=34.80 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=33.6
Q ss_pred HHHHhHHHHhhhhhhhhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhh
Q psy12517 643 ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKET 719 (1286)
Q Consensus 643 qLE~eLeE~q~E~e~~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es 719 (1286)
.|+..|++.+.+.-... ..+.-|-. .+-.|++-|..+.++.++ --+.||.+++.|..+|+++++
T Consensus 401 ~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVE--AQAATANH--------TVMALMASLDAEKAQGQK---KVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHH--------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHH--HHhhhcch--------hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777776666 45544443 444555555555444331 223444444444444444433
No 78
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.86 E-value=3e+02 Score=32.11 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 727 DLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNR 806 (1286)
Q Consensus 727 kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrE 806 (1286)
.++.+|..|-+.|+.-++-+..+..-++.+--.+|.-..|+.+ |-..+.+....|.+++..+.+.+.......+-||.-
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~d-ndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANN-NDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445555566666666676666666666666666666666665 333456666778888999999888888899999999
Q ss_pred Hhhhh
Q psy12517 807 YDILE 811 (1286)
Q Consensus 807 LEeae 811 (1286)
|+++-
T Consensus 143 l~~q~ 147 (390)
T 1deq_A 143 VRDQL 147 (390)
T ss_pred HHHHH
Confidence 99876
No 79
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.05 E-value=50 Score=38.13 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12517 451 RIQALEKELKLANETAEKLQKDLKEATDKL 480 (1286)
Q Consensus 451 ~I~eLEreLk~akEvs~rLq~eLeelEekl 480 (1286)
.+.++.+.|...+..+++||++|.++....
T Consensus 32 ~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 32 GMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 445666667777788999999998886444
No 80
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.22 E-value=3.4e+02 Score=30.99 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhH
Q psy12517 684 EELTQLKKEAQRNAEKVTKLERDKTSLEENLK 715 (1286)
Q Consensus 684 eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~ 715 (1286)
-+|..-|...++++..-..-+.+|--|+.-|+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
T 3mq9_A 404 QELTEAQKGFQDVEAQAATANHTVMALMASLD 435 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH
Confidence 33333344444444333344444444444443
No 81
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=41.05 E-value=61 Score=30.16 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=32.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12517 403 QTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKL 480 (1286)
Q Consensus 403 eleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eLeelEekl 480 (1286)
++...|--+..+|+.++.+.-+|| .+|..+|++|..+..-+.+++.+|..+-+-|
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le-----------------------~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELE-----------------------HQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555543 4677888888888888888888777765544
No 82
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=40.04 E-value=3.1e+02 Score=32.03 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 780 TQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 780 KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
+.+..++..+|..+....+..+.|+..|..+. ..-+.+...+..|.+++..
T Consensus 87 kkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~----~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 87 KKIIEEIIRYENTILAHENTIQQLTDMHIMNS----NKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHhhc
Confidence 55666677777777777788888888887766 5555666677777665544
No 83
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=39.89 E-value=2.8e+02 Score=27.31 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=31.2
Q ss_pred cCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12517 288 TSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELET 329 (1286)
Q Consensus 288 ~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEK 329 (1286)
+.+.+..+|..|...+...+.-+...+.+++.+...+..+..
T Consensus 18 ~~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 18 GSHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp TCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566688888888888888888888888887776666444
No 84
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=39.60 E-value=1.4e+02 Score=27.61 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHH
Q psy12517 780 TQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHG 830 (1286)
Q Consensus 780 KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrs 830 (1286)
++|..+|..+|.++....+......++|.++- ..+-.++.++..-|.
T Consensus 31 ~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Ll----nvK~~Le~EIatYRk 77 (86)
T 1x8y_A 31 DTSRRLLAEKEREMAEMRARMQQQLDEYQELL----DIKLALDMEIHAYRK 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHH
Confidence 45555666666666666666666666777766 777777777776663
No 85
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=39.11 E-value=85 Score=30.01 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 725 ISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLT 804 (1286)
Q Consensus 725 I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQ 804 (1286)
..+|.++|.+|+.+++.+.+.+..+.|...-|..-=. ..|- +...-+|.|+-..+........++|
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~-----~GD~---------~s~~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQ-----MGDP---------ASLEPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGG-----GCCG---------GGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-----cCCH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999998888887776654321 1120 1112345555666666666667777
Q ss_pred hhHhhhh
Q psy12517 805 NRYDILE 811 (1286)
Q Consensus 805 rELEeae 811 (1286)
.=|.+++
T Consensus 83 ~~L~e~e 89 (98)
T 2ke4_A 83 AWLAEAE 89 (98)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777765
No 86
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=38.92 E-value=24 Score=33.49 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=27.0
Q ss_pred hhhhhhhhhHHHHHHHhHHHHhhhhhhhHHHHHHHh
Q psy12517 1011 YDKRATALSDELKAIQGQVLRFKRERDTFKHMLEGA 1046 (1286)
Q Consensus 1011 y~~~~~~~~~e~~~~~~~~~r~kr~rd~~k~~le~a 1046 (1286)
.+..+..|..++..+.....++.+|||.||+-++.-
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666677777777888899999999987753
No 87
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=38.80 E-value=1.6e+02 Score=28.29 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred hHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHH
Q psy12517 706 DKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQY 782 (1286)
Q Consensus 706 qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~Kqy 782 (1286)
++.+|..+|..+|... -..|.+|...|..++ ...+.+..+
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~-------------------------------------~~~E~i~vL 45 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHK-------------------------------------IVMETVPVL 45 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhh
Q psy12517 783 EQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRL 832 (1286)
Q Consensus 783 KRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrskl 832 (1286)
+-|++--++--..+.+-+++++.+-+++. +....+.+++++|.+.+
T Consensus 46 k~Qv~IY~~DF~aERadREkl~~eKe~L~----~ql~~lq~q~~~L~~~~ 91 (94)
T 3jsv_C 46 KAQADIYKADFQAERHAREKLVEKKEYLQ----EQLEQLQREFNKLKVGC 91 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSHHH----HHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHhh
No 88
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=37.99 E-value=16 Score=31.28 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=25.1
Q ss_pred CCCCCCCC---CCCCCCCCCcchhhhhhhhhhhh
Q psy12517 8 LKGDPLCP---LGFHPQVRWPTRCKRCFRDYKEH 38 (1286)
Q Consensus 8 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h 38 (1286)
..|..||- -||---..|-.-|-.|||||.+.
T Consensus 15 r~gq~lC~~ngCGFfG~p~t~n~CSkCyre~~en 48 (49)
T 3oj3_I 15 RTGTSKCRKAGCVYFGTPENKGFCTLCFIEYREN 48 (49)
T ss_dssp --CCCBCSSTTCSSBCBGGGTTBCHHHHHHHHHH
T ss_pred hcCccccccCCCCCccCcccCCcchHHHHHHHHc
Confidence 46778887 68888888999999999999873
No 89
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=37.86 E-value=2.4e+02 Score=25.90 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhh------------h------hhhHHHHHHHHHHHHHHHHHH
Q psy12517 681 QLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQ------------M------TKTISDLQTKCSTLEKSLTAE 742 (1286)
Q Consensus 681 qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~------------a------Kk~I~kLEaRI~eLEeeLe~E 742 (1286)
.+...+..-+...+.+...+..++.++.++..-+.+++.. + ...+..|+.++..++..+..-
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~l 84 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTI 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666777777777777777777632 1 355666777777777666555
Q ss_pred HHHHHHHHHHHHhhhhHH
Q psy12517 743 QKQKALKEKELKTKESEI 760 (1286)
Q Consensus 743 qRek~ea~K~~RK~ERrI 760 (1286)
........+.+..+...|
T Consensus 85 e~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 85 ERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 554444444444444433
No 90
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=36.63 E-value=2.3e+02 Score=34.37 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=26.0
Q ss_pred hHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy12517 696 NAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINV 762 (1286)
Q Consensus 696 lE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKE 762 (1286)
++.....|+.+.++++..+ +.+..-++..|..|.+.++.|++ ....-.-|-++.+++|
T Consensus 499 ~~~~~~~l~~~~~~~~~~~-------~~~~~~~~e~~~ql~~kme~~~~--~~~~e~~~~~~~~~~~ 556 (592)
T 1f5n_A 499 AQASAKMLHEMQRKNEQMM-------EQKERSYQEHLKQLTEKMENDRV--QLLKEQERTLALKLQE 556 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3333444444444444443 33344455566666665554333 2223333444444444
No 91
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=36.45 E-value=89 Score=28.82 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 309 ENEDLNDEKKSLSLRVRELETEAA-------AFKKSNAAEREAEALRTKLAAAEGLCEEL 361 (1286)
Q Consensus 309 EIEDLe~Dkk~L~qrLreLEKKQK-------kfdk~eEld~sieELRTKLlsLE~alEEL 361 (1286)
+++.+...+..+...+..|+.... ++..+..+......+...|..+...+++|
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555444 22344555555555555555555554443
No 92
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=36.08 E-value=2.8e+02 Score=26.08 Aligned_cols=27 Identities=4% Similarity=0.102 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQ 424 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EE 424 (1286)
++.|+.+....-.|+.++..+...+++
T Consensus 62 r~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 62 RRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554444333
No 93
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=34.27 E-value=1.4e+02 Score=30.59 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=33.8
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHH
Q psy12517 395 SSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAE 467 (1286)
Q Consensus 395 ~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~ 467 (1286)
..|.+.|+......+.++..+.+++....+|+++++.++....-.+ .-...|-++|..+.+...
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIse---------ASRqgLrRDLeASReAKK 132 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISD---------ASRQSLRRDLDASREAKK 132 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC----------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHH
Confidence 3447888888888888888888888888888887776654443332 112566666655444433
No 94
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=34.06 E-value=11 Score=38.54 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=24.8
Q ss_pred hhhcCCcchhhhhhHhHHH----HHHhhcCCCcccch
Q psy12517 955 WKMTDDNDSSLTSFQSIDD----AYENVKYTNYGRRE 987 (1286)
Q Consensus 955 ek~kkd~~sfM~sfeaInk----If~~LS~G~~geLe 987 (1286)
++++.+ .|+.+|+.||. ||..|.+|++++|.
T Consensus 2 ~~~~~~--~f~~~f~~i~~~f~~~f~~L~~~g~~~l~ 36 (173)
T 3kta_B 2 EKEKKN--VFMRTFEAISRNFSEIFAKLSPGGSARLI 36 (173)
T ss_dssp -CHHHH--HHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred cHHHHH--HHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 345556 99999999999 99999997577764
No 95
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=34.00 E-value=84 Score=26.66 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=33.6
Q ss_pred hHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHH
Q psy12517 696 NAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKS 738 (1286)
Q Consensus 696 lE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEee 738 (1286)
+|..-..||..+.-|+.|++-+-+.....-++|..||..||..
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444567788888888888888777777788899999999864
No 96
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=33.25 E-value=2.5e+02 Score=27.37 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQ 424 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EE 424 (1286)
.|+++.+-..|-.|++++..++.++.+
T Consensus 57 ~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 57 NKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888888777765
No 97
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.17 E-value=4.3e+02 Score=27.33 Aligned_cols=64 Identities=22% Similarity=0.182 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 309 ENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEE 378 (1286)
Q Consensus 309 EIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReE 378 (1286)
.|..++.++..+..++..|+... .+....++.++.++.++.-.+..+.+.+..++.+++.|-..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel------~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVI------ALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666543 22333445555555565555555556666666666555444
No 98
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=33.10 E-value=2e+02 Score=27.01 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQ 424 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EE 424 (1286)
.+.|-++++.++-|..+++.++.++++
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555544444
No 99
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=33.07 E-value=52 Score=25.22 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=21.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy12517 401 LEQTAKNCRILSFKLRKSERRSEQLE 426 (1286)
Q Consensus 401 LheleKncRiLq~kLrKaerk~EElE 426 (1286)
-+.++|.|-.|+.+|.-++.+++-+|
T Consensus 3 wealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999998888887765
No 100
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=32.94 E-value=2.9e+02 Score=25.31 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHH
Q psy12517 780 TQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHG 830 (1286)
Q Consensus 780 KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrs 830 (1286)
+.|...|..+|.++....+......++|.++- ..+-.++.++..-|.
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll----nvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLL----NVKMALDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHH
Confidence 55555666666666666666666666777766 777777777776663
No 101
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=32.89 E-value=3.5e+02 Score=26.18 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhH
Q psy12517 345 EALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRI 410 (1286)
Q Consensus 345 eELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRi 410 (1286)
.++...|.......+++.....+|...+..+..+ .....+++.+.+..|+++|..---...+
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~----~~~k~~eq~~~le~lk~eL~~~~~el~~ 72 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQ----GQRKTQEQLEVLESLKQELATSQRELQV 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555544311 1112233335555556655553333333
No 102
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=32.69 E-value=5.3e+02 Score=28.31 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=13.8
Q ss_pred hhHhhhhhhhhHHHHHHHHHHHHHHHhh
Q psy12517 805 NRYDILEGEHVDIKASLVKEKENNHGRL 832 (1286)
Q Consensus 805 rELEeae~~~vE~ad~lE~ev~kLrskl 832 (1286)
..+|++.....+.+.++..+++.++..+
T Consensus 198 ~~~e~l~~~l~~~~~~~~qq~e~f~~~~ 225 (273)
T 3s84_A 198 GNTEGLQKSLAELGGHLDQQVEEFRRRV 225 (273)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3344443333345556666666665443
No 103
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.65 E-value=3e+02 Score=25.33 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12517 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELE 328 (1286)
Q Consensus 294 sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLE 328 (1286)
..+..++..+..+...+..+..++..+..-+.+|+
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655555555555554
No 104
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=32.60 E-value=87 Score=28.93 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=34.3
Q ss_pred hHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy12517 696 NAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLT 740 (1286)
Q Consensus 696 lE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe 740 (1286)
+|..-..||..+.-|+.|++-+-+.....-++|..||..||..+-
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556778888888888888777767778888888888887654
No 105
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.27 E-value=3.2e+02 Score=25.61 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy12517 310 NEDLNDEKKSLSLRVRELET 329 (1286)
Q Consensus 310 IEDLe~Dkk~L~qrLreLEK 329 (1286)
|..+-..+..++-.+.+|..
T Consensus 15 Iq~avdtI~lLqmEieELKe 34 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKE 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444
No 106
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.95 E-value=95 Score=28.52 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 361 LMDENEEMKKELRYLEEEMDEMQ 383 (1286)
Q Consensus 361 L~EeLEELKrE~KELReEmEELr 383 (1286)
+...+.+...++.+|+.+++.++
T Consensus 45 LEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444433
No 107
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=31.76 E-value=3.2e+02 Score=26.66 Aligned_cols=64 Identities=11% Similarity=0.166 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy12517 361 LMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQL 425 (1286)
Q Consensus 361 L~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EEl 425 (1286)
+|-.+.-|-.+.-.+.=+++-|+|.+ ||.-..+..++|++.+-.+.|-.+--....+...+..+
T Consensus 14 AMVsnAQLDNEKsal~YqVdlLKD~L-Ee~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 14 AMVSNAQLDNEKTNFMYQVDTLKDML-LELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444433 23333333446666655555444444444444444444
No 108
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.49 E-value=97 Score=29.98 Aligned_cols=27 Identities=26% Similarity=0.510 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhH
Q psy12517 250 DQIDLLRHELDNMKAKCEKLEREKSDI 276 (1286)
Q Consensus 250 ~~i~~lr~el~~~k~rce~~e~eks~i 276 (1286)
+++..|+.+++.+..-|+++.++|..+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888888764
No 109
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.36 E-value=7.2e+02 Score=29.08 Aligned_cols=131 Identities=13% Similarity=0.151 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy12517 311 EDLNDEKKSLSLRVRELETEAA-AFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFRED 389 (1286)
Q Consensus 311 EDLe~Dkk~L~qrLreLEKKQK-kfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe 389 (1286)
.++...++.|++.|.++.+..+ .|.+...+......-.+.....++.|-++. .+|+..|..++..+
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s----------~eLe~~i~~lk~~V--- 129 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQIN----------EDLRSRIEILRRKV--- 129 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH----------HHHHHHHHHHHHHH---
Confidence 5566666667777777766655 333333332222222222222222222222 23333333444444
Q ss_pred hhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHH
Q psy12517 390 QADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKL 469 (1286)
Q Consensus 390 ~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rL 469 (1286)
..---+.|.|+--|+..--++.+||-.. +.+.+-+. |-- =+.|+.+ +-.+--..+
T Consensus 130 ------------~~q~~~ir~Lq~~l~~q~~kiqRLE~~I----d~c~~~C~---~sC----~~~l~~~--vD~e~ye~q 184 (390)
T 1deq_A 130 ------------IEQVQRINLLQKNVRDQLVDMKRLEVDI----DIKIRSCK---GSC----SRALEHK--VDLEDYKNQ 184 (390)
T ss_pred ------------HHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcccc---ccc----chhhhhh--ccHHHHHHH
Confidence 2222266777777777777777776554 33444441 110 1333333 223445566
Q ss_pred HHHHHHHHHH
Q psy12517 470 QKDLKEATDK 479 (1286)
Q Consensus 470 q~eLeelEek 479 (1286)
|++|+.+.+.
T Consensus 185 qKQL~qv~a~ 194 (390)
T 1deq_A 185 QKQLEQVIAI 194 (390)
T ss_pred HHHHHhhhhh
Confidence 7777777544
No 110
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.01 E-value=2.3e+02 Score=25.16 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHH
Q psy12517 777 ELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNH 829 (1286)
Q Consensus 777 El~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLr 829 (1286)
|.-.-|+.+++++...+..+....+....++-++. -.-..|+.+++.++
T Consensus 28 EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elr----r~iq~L~~el~slk 76 (77)
T 3trt_A 28 EAEEWYKSKFADLSEAANRNNDALRQAKQESTEYR----RQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhc
Confidence 33356788888888888888888777777777776 44444444444443
No 111
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.86 E-value=7.8e+02 Score=29.33 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=20.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 405 AKNCRILSFKLRKSERRSEQLEAEKLEAEK 434 (1286)
Q Consensus 405 eKncRiLq~kLrKaerk~EElE~E~~~~E~ 434 (1286)
..+.+.|+..+..+..++..|+..+.....
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777766655433
No 112
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.74 E-value=4.2e+02 Score=27.35 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 344 AEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 344 ieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
+..++..+..++..+..+.+.+.+..+.+..++.|+..++-++
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~ 112 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIEN 112 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555554444
No 113
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=29.52 E-value=3.3e+02 Score=29.13 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=31.9
Q ss_pred HHHhHHHHHhHHHhHHHHHHhhHHHhhhh-hhhHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy12517 693 AQRNAEKVTKLERDKTSLEENLKSKETQM-TKTISDL---QTKCSTLEKSLTAEQKQKAL 748 (1286)
Q Consensus 693 ~QklE~~rk~LE~qvKELq~RL~E~Es~a-Kk~I~kL---EaRI~eLEeeLe~EqRek~e 748 (1286)
..+++.....|..|+.++-.-=.+.|+.+ .|=+.=| ++||++|+..|.++.++...
T Consensus 148 ~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~~~~ 207 (213)
T 1ik9_A 148 NERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREK 207 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444455554 3333333 89999999999888776554
No 114
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=29.41 E-value=2.6e+02 Score=26.05 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHH
Q psy12517 679 LNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEK 737 (1286)
Q Consensus 679 ~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEe 737 (1286)
+.+.++||..-+.+-+.|...+.+|+.=+..|+.--++++ +.|..|..|..+|+.
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~----~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD----KNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4455555555555554454444444444444333333332 335555555555553
No 115
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=29.28 E-value=5e+02 Score=27.47 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=37.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhc-CCCCccccCCCCCCccc
Q psy12517 460 KLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERAN-GGKPPKLGALPKTPSVE 538 (1286)
Q Consensus 460 k~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~~~~a~~~kkKLE~dL~ElE~kle~an-k~k~ealkql~K~~~~~ 538 (1286)
....++-+-||..|..+|+.++... ..-.+-.-+|++|.+++.... +-+-|+++.++.+..
T Consensus 61 ~~L~e~ckELh~~I~~LEeEKYDlE----------------~kvkkqdyEI~dL~~rV~DLrGKFkKP~LkkV~~s~d-- 122 (180)
T 1j1e_C 61 AELQDLARQLHARVDKVDEERYDIE----------------AKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISAD-- 122 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHC----------CCCCHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH----------------HHHHhcchhHHHHHHHHHHHHhcccccchhhhcccHH--
Confidence 4445777889999999998886432 112233458999999997774 455688888877621
Q ss_pred cchhhhhccCCCCcchhHHhhh-hhhHHHHHHHHHHHHHHHHHH
Q psy12517 539 KVSRETLTRGGSQEDPTVLMRD-LQDSMEREADLREQLRFAEEE 581 (1286)
Q Consensus 539 k~~~~sl~r~gsqe~~k~lqre-Lqds~Ere~DLkeQLrfaEEe 581 (1286)
.+.+. |..--...-|++.+|+-+..+
T Consensus 123 -----------------~m~~allg~k~~~~~d~RanLK~Vkke 149 (180)
T 1j1e_C 123 -----------------AMMQALLGARAKESLDLRAHLKQVKKE 149 (180)
T ss_dssp -----------------HHHHHHHSCC-----------------
T ss_pred -----------------HHHHHHHHhhHhhhhhHHHhccccccc
Confidence 12111 221113356888888877665
No 116
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=28.75 E-value=5.5e+02 Score=30.92 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 359 EELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCR 437 (1286)
Q Consensus 359 EEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~l 437 (1286)
.+...++..++.++..++..-...+..+ |.++.+| .+.|..-++. +-+-+.++...++++......+.
T Consensus 37 ae~~a~n~~i~aeNeaikkrNa~aka~Y-e~~l~kY---~~dlakY~~~-------~AeY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 37 AANNAANAALTAENTAIKKRNADAKADY-EAKLAKY---QADLAKYQKD-------LADYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555444444444 3333444 5555555554 33333444444444444333333
No 117
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.33 E-value=1.3e+02 Score=35.03 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12517 453 QALEKELKLANETAEKLQKDLKEATDKL 480 (1286)
Q Consensus 453 ~eLEreLk~akEvs~rLq~eLeelEekl 480 (1286)
..+.+.|...+..+++||++|.++....
T Consensus 34 ~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 34 ETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 3344445556678999999998885433
No 118
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.05 E-value=3.8e+02 Score=25.16 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 296 LLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYL 375 (1286)
Q Consensus 296 LekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfdk~eEld~sieELRTKLlsLE~alEEL~EeLEELKrE~KEL 375 (1286)
+..|...+..+...++.++.....+...+..+..+... .+.. .-+..+.++...++.+..++..+
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~---------~~~~------~ye~~i~~Lr~~i~~~~~ek~~l 75 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKS---------RLGD------LYEEEMRELRRQVDQLTNDKARV 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---------CcHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666555443210 0010 12344445555555555555555
Q ss_pred HHHHHHHHhhh
Q psy12517 376 EEEMDEMQDHF 386 (1286)
Q Consensus 376 ReEmEELrDs~ 386 (1286)
..+++.|.+.+
T Consensus 76 ~~e~dnl~~~~ 86 (93)
T 3s4r_A 76 EVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544444
No 119
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=27.75 E-value=1.4e+02 Score=29.20 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy12517 723 KTISDLQTKCSTLEKSLT 740 (1286)
Q Consensus 723 k~I~kLEaRI~eLEeeLe 740 (1286)
..|..|++||.+|..+|-
T Consensus 82 ~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 557788888888886654
No 120
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.74 E-value=6.6e+02 Score=29.36 Aligned_cols=40 Identities=15% Similarity=0.010 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 293 ASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAA 332 (1286)
Q Consensus 293 ~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQK 332 (1286)
+-.|.+.++.+..-.++|++...++..+...+..|-+..+
T Consensus 26 ~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq 65 (409)
T 1m1j_C 26 ADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIK 65 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665555555555555555555555555544443
No 121
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.61 E-value=2e+02 Score=25.17 Aligned_cols=38 Identities=29% Similarity=0.477 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 349 TKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
.....++..++++...+.+|+.++..|+.|+..|+.-+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666777777777777777766666555
No 122
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.52 E-value=1.8e+02 Score=26.82 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=12.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12517 303 VNELKTENEDLNDEKKSLSLRVRELET 329 (1286)
Q Consensus 303 lnELQqEIEDLe~Dkk~L~qrLreLEK 329 (1286)
+.+|+..+.....++......+..|++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk 47 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELEL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444
No 123
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=26.31 E-value=6.9e+02 Score=29.93 Aligned_cols=85 Identities=7% Similarity=0.034 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHH
Q psy12517 744 KQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVK 823 (1286)
Q Consensus 744 Rek~ea~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ 823 (1286)
+-...+..-++.+--.++.-..|+.+ |-..+.+....|.++++-+.+.++.+....+-||.-|+++- .-...||.
T Consensus 79 ~s~~~s~~y~~~~~~~lk~~~~q~~d-ndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~----skIQRLE~ 153 (491)
T 1m1j_A 79 NKYKTSNRVIVETINILKPGLEGAQQ-LDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQV----VEMKRLEV 153 (491)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 43333333333333344443334443 33345566677888888888888888888999999999886 55556666
Q ss_pred HHHHHHHhhh
Q psy12517 824 EKENNHGRLQ 833 (1286)
Q Consensus 824 ev~kLrsklr 833 (1286)
.+..-..-|+
T Consensus 154 dI~~q~~~Cr 163 (491)
T 1m1j_A 154 DIDIKIRACK 163 (491)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHhc
Confidence 6655544443
No 124
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.43 E-value=6.1e+02 Score=27.09 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 361 LMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEK 434 (1286)
Q Consensus 361 L~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~ 434 (1286)
+..+++.+...+..+..+++++.... .+. +-+=+.|-+-+|--|+.|+.-.-.+|.++.+..|.
T Consensus 144 L~~e~~~l~~~~~~l~~qlE~~v~~K-----~~~-----E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~~~~ 207 (213)
T 1ik9_A 144 LQKENERLLRDWNDVQGRFEKAVSAK-----EAL-----ETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREK 207 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 33444445555555555555555555 222 33345778888888888887776677666665543
No 125
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=25.41 E-value=47 Score=29.77 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=23.8
Q ss_pred CCCCCC--CCCCCCCCCcchhhhhhhhhh
Q psy12517 10 GDPLCP--LGFHPQVRWPTRCKRCFRDYK 36 (1286)
Q Consensus 10 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 36 (1286)
+..||. -||---..|---|--||||+-
T Consensus 12 ~~~lC~ngCGFfGnpaT~nlCSkCyr~~~ 40 (62)
T 2kzy_A 12 GPMLCSTGCGFYGNPRTNGMCSVCYKEHL 40 (62)
T ss_dssp CCCBCTTCCSSBCCTTTTSCCHHHHHHHH
T ss_pred cccchhhCCCCcCChhhcCcCHHHHHHHH
Confidence 778998 689888889999999999983
No 126
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=25.25 E-value=1.8e+02 Score=24.23 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhc
Q psy12517 725 ISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQS 767 (1286)
Q Consensus 725 I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ 767 (1286)
++.||..+..||++.+.-.+..--..-.+.-+|++|..|...+
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4555556666665555444333222223333445555444433
No 127
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.84 E-value=5.1e+02 Score=25.52 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 345 EALRTKLAAAEGLCEELMDENEEMKKELRYLEEE 378 (1286)
Q Consensus 345 eELRTKLlsLE~alEEL~EeLEELKrE~KELReE 378 (1286)
...+..+..+...-+.+..+|..+..+|+.|...
T Consensus 73 ~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 73 RDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 3444555556666666666677777777666543
No 128
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=24.62 E-value=1.4e+02 Score=32.17 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 416 RKSERRSEQLEAEKLEAEKKCREVC 440 (1286)
Q Consensus 416 rKaerk~EElE~E~~~~E~k~lrle 440 (1286)
..++.+++++++++..+.++++|+.
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~ 86 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLY 86 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666667777777775
No 129
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.78 E-value=4.7e+02 Score=24.71 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy12517 346 ALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQL 425 (1286)
Q Consensus 346 ELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EEl 425 (1286)
.+...|..+...-..+..+|..++++...+..+|..+.... ..+ ..+=.+ +--......+++-++
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~-----~~L---~~eE~~-------~w~eyn~~~~ql~e~ 72 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEA-----ERL---DQEEAQ-------YQREYSEFKRQQLEL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHH---hhHHHH-------HHHHHHHHHHHHHHH
Confidence 34444555566666666667777777776666666666555 211 111111 222234455556666
Q ss_pred HHHHHHHHHHHHhh
Q psy12517 426 EAEKLEAEKKCREV 439 (1286)
Q Consensus 426 E~E~~~~E~k~lrl 439 (1286)
++++..++.++.-.
T Consensus 73 ~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 73 DDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666555443
No 130
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.29 E-value=2.1e+02 Score=26.63 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh----------hhhHHHHHHHHHHHHHHH
Q psy12517 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM----------TKTISDLQTKCSTLEKSL 739 (1286)
Q Consensus 678 q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a----------Kk~I~kLEaRI~eLEeeL 739 (1286)
+..-|.-++..-=.....|=..+-.|+...+||=+|++++.+.- ....++++.||.+||++|
T Consensus 3 ~~~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 3 DPEFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 131
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.27 E-value=4.6e+02 Score=24.06 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12517 344 AEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386 (1286)
Q Consensus 344 ieELRTKLlsLE~alEEL~EeLEELKrE~KELReEmEELrDs~ 386 (1286)
-..+..++..++..++.....-+.++.+++.+.+.++-..+.+
T Consensus 16 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL 58 (72)
T 3cve_A 16 NKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3445555555555555555555555555555555544443333
No 132
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=22.27 E-value=4.3e+02 Score=24.83 Aligned_cols=54 Identities=26% Similarity=0.371 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy12517 411 LSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDL 473 (1286)
Q Consensus 411 Lq~kLrKaerk~EElE~E~~~~E~k~lrle~~~~gv~~~~~I~eLEreLk~akEvs~rLq~eL 473 (1286)
|=++++.+.-+++++|+|+.+.|.++--+- .-|..|-+.|..-+.--.|||-+|
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK---------~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATK---------AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444555555566666666666666555443 345555555544444444555443
No 133
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.99 E-value=4.1e+02 Score=28.97 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=42.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHhhhccccccCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy12517 244 NDNEYSDQIDLLRHELDNMKAKCEKLEREKS--DILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLS 321 (1286)
Q Consensus 244 ~~~~~~~~i~~lr~el~~~k~rce~~e~eks--~illrrl~~~~t~~~~t~~sELekLQKklnELQqEIEDLe~Dkk~L~ 321 (1286)
|+.++..++..++.+|..+++..+.++..-. .--+.|+..+-. ..-.+..++...+..+...+.++..++..+..++
T Consensus 64 d~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~-~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~ 142 (369)
T 4dk0_A 64 DSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYG-QKATSLDTLNTAKATLNNAKAEMDVVQENIKQAE 142 (369)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGG-SSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777766665544332211 111233222212 2233455666666666666665555555554444
Q ss_pred HHHHHH
Q psy12517 322 LRVREL 327 (1286)
Q Consensus 322 qrLreL 327 (1286)
..+..+
T Consensus 143 ~~l~~a 148 (369)
T 4dk0_A 143 IEVNTA 148 (369)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 134
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=21.89 E-value=7.1e+02 Score=26.13 Aligned_cols=121 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred hHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc----chHHHHHH
Q psy12517 702 KLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD----NVTKQITE 777 (1286)
Q Consensus 702 ~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee----kn~~rlqE 777 (1286)
.|+.-+---+.+++++|..++ +++..||.+-+.-.+...+-.+.++-+=-++.-|..+++. ..+.+|..
T Consensus 6 ple~~~~~k~~r~e~aek~~~-------~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~i~~m~~ 78 (169)
T 3k29_A 6 PLEPVLSIKKDRVDRAEKVVK-------EKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAILKMKA 78 (169)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 778 LKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 778 l~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
-++-+..++-+.|..++...-....-+..|+.+. .....+-.++.++ ..++.
T Consensus 79 yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar----~el~qArke~eKf-elHrq 130 (169)
T 3k29_A 79 YIKVVAIQLSEEEEKVNKQKENVLAASKELERAE----VELTKRRKEEEKT-RLHKE 130 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHH
No 135
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.88 E-value=35 Score=27.37 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=19.9
Q ss_pred CCCCChhhhhhHHHHHHHhhhhhh
Q psy12517 1137 SRANSVDDLKAVITSLEQQISCME 1160 (1286)
Q Consensus 1137 ~~~~s~~~~~~~~~~leqqi~~~e 1160 (1286)
++..+++++|...+.||+||..||
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHhhHHHHHHHHHHHHHHHHhcC
Confidence 445689999999999999998876
No 136
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.70 E-value=60 Score=34.14 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=69.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 672 GSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKAL 748 (1286)
Q Consensus 672 ~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a---Kk~I~kLEaRI~eLEeeLe~EqRek~e 748 (1286)
|++++.++.+.+.++..+++.+ |.+|+--|---.+.+ +=.+.. +
T Consensus 48 g~Vs~~~i~~eA~~~~me~e~Y-------------v~el~kAl~~~~~~~~~~~f~~s~-----------------e--- 94 (175)
T 3mud_A 48 GTVSESEISQEADDMAMEKGKY-------------VGELRKALLSGAGPADVYTFNFSK-----------------E--- 94 (175)
T ss_dssp EEEEHHHHHHHHHHTTCCHHHH-------------HHHHHHHHTTCCCTTCCEEEEECT-----------------T---
T ss_pred eeeCHHHHHHHHHHhcCcHHHH-------------HHHHHHHHhcCCCCCcceEEecCh-----------------h---
Confidence 5677888888888887777776 666665552222222 100100 0
Q ss_pred HHHHHHhhhhHHHHhhhhc-----cc--chHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy12517 749 KEKELKTKESEINVLKNQS-----SD--NVTKQITELK-------TQYEQEIKKLEDTLVQERQEYEDLTNRYDIL 810 (1286)
Q Consensus 749 a~K~~RK~ERrIKEL~~Q~-----ee--kn~~rlqEl~-------KqyKRQlEEaEEea~~~~akyRKLQrELEea 810 (1286)
-.--.+|+.||.+.+++ .. .-+.-+.++. ..++..++.+|+++.....+|..++++|+-.
T Consensus 95 --~~~~syek~lk~vsfrLGs~~Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqT 168 (175)
T 3mud_A 95 --SCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQT 168 (175)
T ss_dssp --TCEEEEEEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234677899999988 33 3355556665 7788899999999999999999999998753
No 137
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.30 E-value=2e+02 Score=31.46 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=22.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhcCCCcccH
Q psy12517 400 ELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCR--EVCGGMEGVNK 448 (1286)
Q Consensus 400 eLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~l--rle~~~~gv~~ 448 (1286)
+++++..+....+.++..++.++.++++++..++..+. .+-++.+|+..
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~ 166 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVI 166 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEE
Confidence 34444444444445555555555555555544443332 23334456653
No 138
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.24 E-value=1.3e+02 Score=34.88 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 354 AEGLCEELMDENEEMKKELRYLEEEMDEMQDH 385 (1286)
Q Consensus 354 LE~alEEL~EeLEELKrE~KELReEmEELrDs 385 (1286)
++.++.++.+.++++++.++++..++..+.++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 139
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=21.08 E-value=5.2e+02 Score=24.28 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12517 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREV 439 (1286)
Q Consensus 398 ~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~k~lrl 439 (1286)
..+|..+--..-.++-+|++++.+..+|..++..++.+..+|
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344445566666666666666655555554444
No 140
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=21.05 E-value=4.6e+02 Score=25.32 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHH
Q psy12517 679 LNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSK 717 (1286)
Q Consensus 679 ~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~ 717 (1286)
+-.|.+-|..++.+.|+...--+.|+-.++.|..+|+++
T Consensus 48 V~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 48 VVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555444443333334444444444444433
No 141
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=20.55 E-value=3.1e+02 Score=26.27 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=48.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q psy12517 780 TQYEQEIK-KLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834 (1286)
Q Consensus 780 KqyKRQlE-EaEEea~~~~akyRKLQrELEeae~~~vE~ad~lE~ev~kLrsklr~ 834 (1286)
..|+-|.. +.|-.++...+....+++.+-+++.-|.-.++.-|-++..||.+|..
T Consensus 31 ~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 31 NTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45676664 88999999999999999999999999999999999999999998865
No 142
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.43 E-value=5e+02 Score=23.80 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 355 EGLCEELMDENEEMKKELRYLEEEMD 380 (1286)
Q Consensus 355 E~alEEL~EeLEELKrE~KELReEmE 380 (1286)
...++.+...++.++.++..|...|.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666655554
No 143
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=20.11 E-value=9.7e+02 Score=27.85 Aligned_cols=137 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHH-----hHHHHHhHHHhHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517 673 SAASRELNQLREELTQLKKEAQR-----NAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKA 747 (1286)
Q Consensus 673 ~~~e~q~~qL~eEL~~Eqe~~Qk-----lE~~rk~LE~qvKELq~RL~E~Es~aKk~I~kLEaRI~eLEeeLe~EqRek~ 747 (1286)
.++..=...+...|..-.....| ..+.+|.++.....++..+......+.+.-.+.+.++.+.+.-...+++-..
T Consensus 99 ~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~ 178 (486)
T 3haj_A 99 EVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKA 178 (486)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred H---HHHHHHhhhhHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHH
Q psy12517 748 L---KEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDI 817 (1286)
Q Consensus 748 e---a~K~~RK~ERrIKEL~~Q~eekn~~rlqEl~KqyKRQlEEaEEea~~~~akyRKLQrELEeae~~~vE~ 817 (1286)
. ..|.+.|+..++.. -...+++....|+..|..+...-.......-.+-..+.++++++|..
T Consensus 179 d~~~t~k~~eK~~~k~~k--------~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~ 243 (486)
T 3haj_A 179 DPSLNPEQLKKLQDKIEK--------CKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRF 243 (486)
T ss_dssp CCCSCSHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!