RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12517
(1286 letters)
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 79.4 bits (196), Expect = 9e-15
Identities = 148/692 (21%), Positives = 272/692 (39%), Gaps = 94/692 (13%)
Query: 217 RRKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDI 276
R E LE + E L E + + + E ++ + L EL+ + A+ E+ + E +
Sbjct: 309 ERLEELENELEELE--ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEK 366
Query: 277 LLRRLASMETTTSK------TTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETE 330
L L +E +EL +++ + ELK E E L + + LS R+ +L+ E
Sbjct: 367 LSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEE 426
Query: 331 AAAFK-KSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFRED 389
+ + + E E L +L E EEL D +E+++EL L+EE+ ++
Sbjct: 427 LKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSL 486
Query: 390 QADEYSSLKKELEQTAKNCRILSFKLRKSE-------------------------RRSEQ 424
+A L+ E + +L R +
Sbjct: 487 EA-RLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALGNRLQA 545
Query: 425 LEAEKLEAEKKCREVCGGMEG----VNKVERIQALEKELKLANETAEKLQKDLKEATDKL 480
+ E E KK E + ++RI+ L A L DL + K
Sbjct: 546 VVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKY 605
Query: 481 ERANGGKPPKLGALPKTPSVETAEKLQKDLKEAT-------DKLERA---NGGKPPKLGA 530
E A LG +E A +L + L+ D +E + GG K +
Sbjct: 606 EPAV---RFVLGDTLVVDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSS 662
Query: 531 LPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVA 590
L + ++++ E E ++ L++ + DL E+LR EE +R
Sbjct: 663 LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEEL-ERQLEEL 721
Query: 591 RDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKI 650
+ + Q++ E E ++ ELE L+ +L LE E + E + + +I
Sbjct: 722 KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781
Query: 651 TQLEASIREERERATDLSVK------AGSAASRELNQLREELTQLKKEAQRNAEKVTKLE 704
+LE + +E +L + A REL L + +L++E + E++ +LE
Sbjct: 782 EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELE 841
Query: 705 RDKTSLEENLKS---KETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEIN 761
LEE L+ + ++ + + +L+ + LE L +++K E+EL+ ESE+
Sbjct: 842 EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELA 901
Query: 762 VLKNQSSDNVTKQ-------------------------ITELKTQYEQEIKKLEDTL--- 793
LK + + L+T+ E+EI++LE+ +
Sbjct: 902 ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEAL 961
Query: 794 --VQER--QEYEDLTNRYDILEGEHVDIKASL 821
V R +EYE++ RY+ L+ + D++ +
Sbjct: 962 GPVNLRAIEEYEEVEERYEELKSQREDLEEAK 993
Score = 60.9 bits (148), Expect = 4e-09
Identities = 76/430 (17%), Positives = 164/430 (38%), Gaps = 89/430 (20%)
Query: 392 DEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEK--------LEAEKKCREV-CGG 442
+ +++LE+T +N L L + E++ E+LE + L+AE + E+
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLL 231
Query: 443 MEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVET 502
+ + ++ LE+EL E E+LQ++L+EA ++E E
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEEL---------REE 282
Query: 503 AEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQ 562
E+LQ++L E +++E G + + L+
Sbjct: 283 LEELQEELLELKEEIEELEG-------------EISLLRER-----------------LE 312
Query: 563 DSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGEL 622
+ +L E+L +E+ +++ E T ++ L
Sbjct: 313 ELENELEELEERLEELKEKI-------------------EALKEELEERETLLEELEQLL 353
Query: 623 ESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQL 682
L+ LE + ++ E + + A + E EL +L
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAELAE-----------IRNELEEL 402
Query: 683 REELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM----------TKTISDLQTKC 732
+ E+ L++ +R +E++ L+ + LE L+ +T++ + + +L+ +
Sbjct: 403 KREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462
Query: 733 STLEKSLTAEQKQKALKEKELKTKESEINVLKN-QSSDNVTKQITELKTQYEQEIKKLED 791
LE+ L Q++ EKEL + E+ ++ L+ Q + + + E +
Sbjct: 463 KELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVA 522
Query: 792 TLVQERQEYE 801
L++ +++YE
Sbjct: 523 ELIKVKEKYE 532
Score = 60.1 bits (146), Expect = 7e-09
Identities = 79/378 (20%), Positives = 157/378 (41%), Gaps = 50/378 (13%)
Query: 414 KLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDL 473
+L++ E +LEA+ + E++ + + N++ ++ L +EL+ E E+ ++L
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSL------KNELRSLEDLLEELRRQLEELERQLEEL 721
Query: 474 KEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPK 533
K LE +L L E E+L+++L+E ++LE +L +L +
Sbjct: 722 KRELAALEEELEQLQSRLEEL-----EEELEELEEELEELQERLEELEE----ELESLEE 772
Query: 534 TPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDA 593
+ K E L Q E +L E+L AE
Sbjct: 773 ALAKLKEEIEELEE------------KRQALQEELEELEEELEEAERR-----LDALERE 815
Query: 594 FHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQL 653
+ ++E+ E E ++ +L+ L+ +L LE E ++ + ++ E ++ +L
Sbjct: 816 LESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875
Query: 654 EASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEEN 713
E ++E E +L EL +L EL +LK+E ++ E++ +LE LE
Sbjct: 876 EDELKELEEEKEELE--------EELRELESELAELKEEIEKLRERLEELEAKLERLEVE 927
Query: 714 LKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTK 773
L E ++ E +L E +++ + +E +N+ + + V +
Sbjct: 928 LPELEEELE----------EEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEE 977
Query: 774 QITELKTQYEQEIKKLED 791
+ ELK+Q E + E
Sbjct: 978 RYEELKSQREDLEEAKEK 995
Score = 58.2 bits (141), Expect = 2e-08
Identities = 91/408 (22%), Positives = 166/408 (40%), Gaps = 88/408 (21%)
Query: 298 KLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGL 357
+ ++++ + E L D + L ++ +LE +A ++ + E L L A+
Sbjct: 176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAK-- 233
Query: 358 CEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRK 417
+EL E EE+++EL LEEE++E+Q+ E+ E LK ELE+ + L +L +
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQE-ELEEAEKEIEELKSELEELREELEELQEELLE 292
Query: 418 SERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEAT 477
+ E+LE E ++ E ++ LE+ L+ E E L+++L+E
Sbjct: 293 LKEEIEELEGEISLLRERLEE---------LENELEELEERLEELKEKIEALKEELEERE 343
Query: 478 DKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSV 537
LE E+L +L+EA ++LE
Sbjct: 344 TLLEE--------------------LEQLLAELEEAKEELEEKLSAL------------- 370
Query: 538 EKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPN 597
+E L +L + A++R +L + E
Sbjct: 371 ---------LEELEELFEALREELAELEAELAEIRNELEELKRE---------------- 405
Query: 598 LVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASI 657
+++ LE LK +L LEAE ++ +T++ E + ++ +LE +
Sbjct: 406 ----------IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455
Query: 658 REERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLER 705
E R+R +L REL +L+EEL +L+KE ++ +LE
Sbjct: 456 EELRDRLKEL--------ERELAELQEELQRLEKELSSLEARLDRLEA 495
Score = 52.8 bits (127), Expect = 1e-06
Identities = 87/388 (22%), Positives = 169/388 (43%), Gaps = 42/388 (10%)
Query: 335 KKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEY 394
+ S A +RE + L +LA E E+L +E + +K ELR LE+ ++E++ +
Sbjct: 660 RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR--------RQL 711
Query: 395 SSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGV-NKVERIQ 453
L+++LE+ + L +L + + R E+LE E E E++ E+ +E + ++E ++
Sbjct: 712 EELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771
Query: 454 ALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETA--EKLQKDLK 511
+LK E E+ ++ L+E ++LE +L AL + E+L+++++
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831
Query: 512 EATDKLERANGGKPPKLGALPKTPSVEKVSRETL--TRGGSQEDPTVLMRDLQDSMEREA 569
E +++E KL L + + E L + + L +L++ E +
Sbjct: 832 ELEEEIEELEE----KLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE 887
Query: 570 DLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKL 629
+L E+LR E E ++++ + ++ +LE L+ +L
Sbjct: 888 ELEEELRELESELA-------------------ELKEEIEKLRERLEELEAKLERLEVEL 928
Query: 630 SALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQL 689
LE E ++ D LE T+LE I E L A E ++ E +L
Sbjct: 929 PELEEELEEEYEDTLE-----TELEREIERLEEEIEALGP-VNLRAIEEYEEVEERYEEL 982
Query: 690 KKEAQRNAEKVTKLERDKTSLEENLKSK 717
K + + E KL L++ + +
Sbjct: 983 KSQREDLEEAKEKLLEVIEELDKEKRER 1010
Score = 51.6 bits (124), Expect = 2e-06
Identities = 84/397 (21%), Positives = 156/397 (39%), Gaps = 70/397 (17%)
Query: 247 EYSDQIDLLRHELDNMKAKCEKLEREKSDI-----LLRRLASMETTTSKTTASELLKLQQ 301
E Q++ L EL ++K + LE ++ L R EL +LQ
Sbjct: 678 ELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQS 737
Query: 302 RVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEEL 361
R+ EL+ E E+L +E + L R+ ELE E E+L LA +L
Sbjct: 738 RLEELEEELEELEEELEELQERLEELE-------------EELESLEEALA-------KL 777
Query: 362 MDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERR 421
+E EE++++ + L+EE E+ +E ++ L+ + L + + E+
Sbjct: 778 KEEIEELEEKRQALQEE--------LEELEEELEEAERRLDALERELESLEQRRERLEQE 829
Query: 422 SEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLE 481
E+LE E E E+K E+ +E + K ++ L++EL+ E+L+ +LKE ++ E
Sbjct: 830 IEELEEEIEELEEKLDELEEELEELEK--ELEELKEELEELEAEKEELEDELKELEEEKE 887
Query: 482 RANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVS 541
E +L+ +L E +++E+ L +
Sbjct: 888 ELE----------------EELRELESELAELKEEIEKLRERLEELEAKLERLEVELPEL 931
Query: 542 RETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQY 601
E L T L R+++ +E E + + E Y+ +
Sbjct: 932 EEELEEEYEDTLETELEREIE-RLEEEIEALGPVNLRAIEEYEEV--------------- 975
Query: 602 LQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKK 638
E+ E +++ + E L + L+ EK++
Sbjct: 976 ---EERYEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009
Score = 48.9 bits (117), Expect = 2e-05
Identities = 62/241 (25%), Positives = 118/241 (48%), Gaps = 4/241 (1%)
Query: 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNE 305
E +++ L EL+ ++ + E+ E+E L L + + ELL+L++ + E
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIE-ELKSELEELREELEELQE-ELLELKEEIEE 299
Query: 306 LKTENEDLNDEKKSLSLRVRELETEAAAFKKS-NAAEREAEALRTKLAAAEGLCEELMDE 364
L+ E L + + L + ELE K+ A + E E T L E L EL +
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359
Query: 365 NEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQ 424
EE++++L L EE++E+ + RE+ A+ + L + + + R + + ER SE+
Sbjct: 360 KEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSER 419
Query: 425 LEAEKLEAEKKCREVCG-GMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERA 483
LE K E ++ E+ E E ++ LE++L+ + ++L+++L E ++L+R
Sbjct: 420 LEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRL 479
Query: 484 N 484
Sbjct: 480 E 480
Score = 35.5 bits (82), Expect = 0.22
Identities = 63/286 (22%), Positives = 119/286 (41%), Gaps = 33/286 (11%)
Query: 1010 RYDKRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTIADLKASHNSPTTSRLSGGS 1069
+ AL +EL+ +Q ++ + E + + LE Q+ + +L+ S +
Sbjct: 720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKL-- 777
Query: 1070 THSEVITTSDRKKKGLFGKLKQLTRSSHSVDRDSDTSQFDPGSDTSL-----DDSRNLKD 1124
E I + K++ L +L++L +R D + + S + L++
Sbjct: 778 --KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835
Query: 1125 RITGIFKKSGSTSRANSVDDLKAVITSLEQQISCMEDELSESRLETSRLKTEL---VSEK 1181
I + +K +D+L+ + LE+++ +++EL E E L+ EL EK
Sbjct: 836 EIEELEEK---------LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEK 886
Query: 1182 SAAEIKLSELTSKVNELEEDRLLSSGRTNKIPGLKTRMELAWHKEREEQQRLLQETSTLA 1241
E +L EL S++ EL+E+ R ++ R+E+ + EE + ++T
Sbjct: 887 EELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT---- 942
Query: 1242 RDLRQTLFEVERERDKERLEAK-RRFDQMKKTTEEEQEECRRKLTE 1286
E E ER+ ERLE + + EE EE + E
Sbjct: 943 -------LETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEE 981
Score = 31.6 bits (72), Expect = 3.8
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Query: 1160 EDELSESRLETSRLKTE---LVSEKSAAEIKLSELTSKVNELEEDRLLSSGRTNKIPGLK 1216
EL E E SRL+ E L E AE ++ EL S++ EL E+ ++
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI 297
Query: 1217 TRMELAWHKEREEQQRLLQETSTLARDLRQTLFEVERERDKERLEAKRRFDQMKKTTEEE 1276
+E RE + L E L L + + + E KE LE + + + E
Sbjct: 298 EELEGEISLLRERLEELENELEELEERLEEL--KEKIEALKEELEERETLLEELEQLLAE 355
Query: 1277 QEE 1279
EE
Sbjct: 356 LEE 358
Score = 31.2 bits (71), Expect = 4.9
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNE 305
+E ++++ L EL+ +K + E+LE EK + L L +E + EL +L+ + E
Sbjct: 845 DELEEELEELEKELEELKEELEELEAEKEE-LEDELKELEEEKEELEE-ELRELESELAE 902
Query: 306 LKTENEDLNDEKKSLSLRVRELETEAAAF-----------------KKSNAAEREAEALR 348
LK E E L + + L ++ LE E ++ E E EAL
Sbjct: 903 LKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962
Query: 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKN 407
A EE+ + EE+K + LEE +++ + E ++ K+ ++ +N
Sbjct: 963 PVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINEN 1021
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 78.6 bits (194), Expect = 1e-14
Identities = 120/629 (19%), Positives = 241/629 (38%), Gaps = 86/629 (13%)
Query: 246 NEYSDQIDLLRHELDNMKAKCEKLERE------KSDILLRRLASMETTTSKTTASELLKL 299
E ++++ L+ EL + + E+L E K + L ++ +E E+ +L
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE--------EEIEEL 286
Query: 300 QQRVNELKTENEDLNDEKKSLSLRVRELETEAAA--------FKKSNAAEREAEALRTKL 351
Q+ + L E L +K+ L R+ LE + K + E L KL
Sbjct: 287 QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
Query: 352 AAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRIL 411
+ E L E EE++ EL LE ++E+++ E + + L+ ++ L
Sbjct: 347 EELKEELESLEAELEELEAELEELESRLEELEEQ-LETLRSKVAQLELQIASLNNEIERL 405
Query: 412 SFKLRKSERRSEQLEAEKLEAEKKC-----REVCGGMEGVNK-----VERIQALEKELKL 461
+L + E R E+L+ E E KK +E+ +E + + E ++ LE+ L+
Sbjct: 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE 465
Query: 462 ANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERAN 521
E E+ ++ L A +L + +L +L + E E + +K +
Sbjct: 466 LREELEEAEQALDAAERELAQLQA----RLDSLERL--QENLEGFSEGVKALLKNQSGLS 519
Query: 522 GGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEE 581
G L L + + E G Q V++ +L + + A L++
Sbjct: 520 GILGV-LSELISVDEGYEAAIEAALGGRLQA---VVVENLNAAKKAIAFLKQN------- 568
Query: 582 RYQRLYSVARDAFHP-NLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFE 640
+ R F P + ++ +I+ E I G L K + +K
Sbjct: 569 ------ELGRVTFLPLDSIKGTEIQGNDREI---LKNIEGFLGVAKDLVKFDPKLRKALS 619
Query: 641 ------------TDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQ 688
+ LE + K+ + + + V G +A + L +
Sbjct: 620 YLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSIL-----E 674
Query: 689 LKKEAQRNAEKVTKLERDKTSLEENLKSKETQ---MTKTISDLQTKCSTLEKSLTAEQKQ 745
++E + EK+ +LE LE+ L + + + + L+ + L + ++A +K
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
Query: 746 KALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTN 805
A E E++ E I L + ++ + + E+ +++ E+ L + E E+L
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTE-----LEAEIEELEERLEEAEEELAEAEAEIEELEA 789
Query: 806 RYDILEGEHVDIKASLVKEKENNHGRLQQ 834
+ + L+ E ++ +L E L +
Sbjct: 790 QIEQLKEELKALREAL-DELRAELTLLNE 817
Score = 67.0 bits (164), Expect = 5e-11
Identities = 58/264 (21%), Positives = 124/264 (46%), Gaps = 4/264 (1%)
Query: 566 EREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESL 625
ER +L+ +LR E R+ + + E+ E + E ++ +LE L
Sbjct: 213 ERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL 272
Query: 626 KSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREE 685
+ ++S LE E ++ + ++ +++I++LE + RER +L + +L +L +
Sbjct: 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL-EELEAQLEELESK 331
Query: 686 LTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQ---MTKTISDLQTKCSTLEKSLTAE 742
L +L +E EK+ +L+ + SLE L+ E + + + +L+ + TL +
Sbjct: 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
Query: 743 QKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYED 802
+ Q A E++ E+ + L+++ + LK E E+K+L+ L + +E E+
Sbjct: 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451
Query: 803 LTNRYDILEGEHVDIKASLVKEKE 826
L + LE +++ L + ++
Sbjct: 452 LQEELERLEEALEELREELEEAEQ 475
Score = 65.5 bits (160), Expect = 1e-10
Identities = 60/284 (21%), Positives = 124/284 (43%), Gaps = 18/284 (6%)
Query: 551 QEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAE 610
+E+ L ++L++ + + LR+ L E E Q +A Q+ K E
Sbjct: 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA------------QLSKELTE 758
Query: 611 SSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVK 670
E ++ LE + +L+ EAE ++ E I + ++ L ++ E R T L+ +
Sbjct: 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
Query: 671 AGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQT 730
A + R L L + ++ + E++ +L D SL ++ E + + S+L+
Sbjct: 819 AANLRER-LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE- 876
Query: 731 KCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLE 790
L + ++ AL EL+ E+ L+++ S+ +++ EL+ + Q +LE
Sbjct: 877 ---ALLNERASLEEALALLRSELEELSEELRELESKRSEL-RRELEELREKLAQLELRLE 932
Query: 791 DTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834
V+ E L+ Y + E ++ + ++E RL++
Sbjct: 933 GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
Score = 57.4 bits (139), Expect = 5e-08
Identities = 64/389 (16%), Positives = 137/389 (35%), Gaps = 63/389 (16%)
Query: 452 IQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLK 511
I +E++ E E+L++ + E L K ++L+
Sbjct: 672 ILERRREIEELEEKIEELEEKIAELEKALA--------------------ELRKELEELE 711
Query: 512 EATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADL 571
E ++L + ++ AL K + + E L +Q + +L+ +E +
Sbjct: 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT--ELEAEIEELEER 769
Query: 572 REQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSA 631
E+ E E E + Q+ EL++L+ L
Sbjct: 770 LEEAEEELAE----------------------AEAEIEELEAQIEQLKEELKALREALDE 807
Query: 632 LEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAG------SAASRELNQLREE 685
L AE + ++ LE I R DL + + + E+ +L E
Sbjct: 808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
Query: 686 LTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQ---MTKTISDLQTKCSTLEKSLTAE 742
+ +L+ E + + LE L L+ + + S+L+ + L + L
Sbjct: 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
Query: 743 QKQKALKEKELKTKESEINVLKNQSSDNV---TKQITELKTQYEQEIKKLEDTLVQ---- 795
+ + E + + ++ + + + +I + + + + +K+LE+ + +
Sbjct: 928 ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPV 987
Query: 796 ---ERQEYEDLTNRYDILEGEHVDIKASL 821
+EYE+L RYD L + D+ +
Sbjct: 988 NLAAIEEYEELKERYDFLTAQKEDLTEAK 1016
Score = 52.8 bits (127), Expect = 1e-06
Identities = 73/349 (20%), Positives = 140/349 (40%), Gaps = 40/349 (11%)
Query: 341 EREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKE 400
RE E L K+ E EL E++KEL LEEE+++++ E+ + + S+L+K+
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE-LEELSRQISALRKD 734
Query: 401 LEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELK 460
L + L ++ + + +LEAE E E++ E E + E E++
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA---------EEELAEAEAEIE 785
Query: 461 LANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERA 520
E+L+++LK + L+ + + +L+E + LER
Sbjct: 786 ELEAQIEQLKEELKALREALDELRA-------------ELTLLNEEAANLRERLESLERR 832
Query: 521 NGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEE 580
+L L + E+L E+ L+ +L+ +E + R L A
Sbjct: 833 IAATERRLEDLEEQIEELSEDIESLA--AEIEELEELIEELESELEALLNERASLEEALA 890
Query: 581 ERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFE 640
L ++ + E ++++++ ELE L+ KL+ LE + E
Sbjct: 891 LLRSELEELSEE---------------LRELESKRSELRRELEELREKLAQLELRLEGLE 935
Query: 641 TDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQL 689
I ++++ + EE E + A R L +L ++ +L
Sbjct: 936 VRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
Score = 51.6 bits (124), Expect = 3e-06
Identities = 74/360 (20%), Positives = 131/360 (36%), Gaps = 51/360 (14%)
Query: 369 KKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAE 428
++E+ LEE+++E+++ E + + L+KELE+ + L +L + R+ L +
Sbjct: 676 RREIEELEEKIEELEEKIAELEK-ALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
Query: 429 KLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKP 488
E + ERI L KEL E+L++ L+EA ++L A
Sbjct: 735 LARLEAEVE---------QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI- 784
Query: 489 PKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRG 548
E E + LKE L A +L L E+ +
Sbjct: 785 ------------EELEAQIEQLKEELKALREALDELRAELTLLN-----EEAANLRERLE 827
Query: 549 GSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVR 608
+ R L+D E+ +L E + E + + ++E
Sbjct: 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE------------ELESEL 875
Query: 609 AESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLS 668
E+ + L L+S+L L E + E SK ++L + E RE+ L
Sbjct: 876 EALLNERASLEEALALLRSELEELSEE-------LRELESKRSELRRELEELREKLAQLE 928
Query: 669 VKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDL 728
++ R N +L +E E+ LE EE + + ++ I +L
Sbjct: 929 LRLEGLEVRIDNL----QERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
Score = 45.8 bits (109), Expect = 2e-04
Identities = 51/251 (20%), Positives = 107/251 (42%), Gaps = 18/251 (7%)
Query: 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDI----------LLRRLASMETTTSKTT--A 293
E + LR EL+ ++ + E+L +E ++ L R A +E + +
Sbjct: 694 AELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
Query: 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREA-EALRTKLA 352
EL +L+ + EL+ E+ +E + ELE + K+ A REA + LR +L
Sbjct: 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
Query: 353 AAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILS 412
L + E +++ + E ++++++ E+ +++ SL E+E+ + L
Sbjct: 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQI-EELSEDIESLAAEIEELEELIEELE 872
Query: 413 FKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVE-RIQALEKELKLANETAEKLQK 471
+L LE + E+ E + ++E + L +EL+ E +L+
Sbjct: 873 SELEALLNERASLEEALALLRSELEEL---SEELRELESKRSELRRELEELREKLAQLEL 929
Query: 472 DLKEATDKLER 482
L+ +++
Sbjct: 930 RLEGLEVRIDN 940
Score = 45.4 bits (108), Expect = 2e-04
Identities = 97/443 (21%), Positives = 176/443 (39%), Gaps = 84/443 (18%)
Query: 325 RELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQD 384
R + EAA K +E E KL + L D E++++L+ LE +
Sbjct: 158 RAIFEEAAGISKYKERRKETE---RKLERTRENLDRLEDILNELERQLKSLERQ------ 208
Query: 385 HFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGME 444
++A+ Y LK EL + +L + + E E+L+ E EAE++ E+ ++
Sbjct: 209 ---AEKAERYKELKAELRELELALLVLRLEELREEL--EELQEELKEAEEELEELTAELQ 263
Query: 445 GVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAE 504
E+++ L E+ E E+LQK+L +++ R K +
Sbjct: 264 --ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK----------------Q 305
Query: 505 KLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDS 564
L++ L +LE L S+ D L +L +
Sbjct: 306 ILRERLANLERQLEELE---------------------AQLEELESKLD--ELAEELAEL 342
Query: 565 MEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELES 624
E+ +L+E+L + E + L E E + ++ +LE+
Sbjct: 343 EEKLEELKEELE-SLEAELEEL------------------EAELEELESRLEELEEQLET 383
Query: 625 LKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLRE 684
L+SK++ LE + +I +++ +LE ++ +L K A EL +L+
Sbjct: 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA---ELKELQA 440
Query: 685 ELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQK 744
EL +L++E + E++ +LE L E L+ E + +L + L+ SL
Sbjct: 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD-SL----- 494
Query: 745 QKALKEKELKTKESEINVLKNQS 767
+ L+E E +LKNQS
Sbjct: 495 -ERLQENLEGFSEGVKALLKNQS 516
Score = 45.0 bits (107), Expect = 3e-04
Identities = 38/184 (20%), Positives = 74/184 (40%), Gaps = 10/184 (5%)
Query: 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNE 305
+E ++ LL E N++ + E LER + R + + ++ L + E
Sbjct: 806 DELRAELTLLNEEAANLRERLESLERRIAA--TERRLEDLEEQIEELSEDIESLAAEIEE 863
Query: 306 LKTENEDLNDEKKSLSLRVRELETEAAAFKKS-NAAEREAEALRTKLAAAEGLCEELMDE 364
L+ E+L E ++L LE A + E L +K + EEL ++
Sbjct: 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
Query: 365 NEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQ 424
+++ L LE +D +Q+ E+ + LE+ + ++ RR ++
Sbjct: 924 LAQLELRLEGLEVRIDNLQERLSEEYSL-------TLEEAEALENKIEDDEEEARRRLKR 976
Query: 425 LEAE 428
LE +
Sbjct: 977 LENK 980
Score = 36.2 bits (84), Expect = 0.16
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 4/146 (2%)
Query: 1141 SVDDLKAVITSLEQQISCMEDELSESRLETSRLKTELVSEKSAAEIKLSELTSKVNELEE 1200
+ +L+ + L++++ +E EL E EL S E +L L SKV +LE
Sbjct: 338 ELAELEEKLEELKEELESLEAELEELE----AELEELESRLEELEEQLETLRSKVAQLEL 393
Query: 1201 DRLLSSGRTNKIPGLKTRMELAWHKEREEQQRLLQETSTLARDLRQTLFEVERERDKERL 1260
+ ++ R+E + ++E + LL++ Q E E +E
Sbjct: 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
Query: 1261 EAKRRFDQMKKTTEEEQEECRRKLTE 1286
E R ++ + EE EE + L
Sbjct: 454 EELERLEEALEELREELEEAEQALDA 479
Score = 35.0 bits (81), Expect = 0.35
Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Query: 1134 GSTSRANSVDDLKAVITSLEQQISCMEDELSESRLETSRLKTELVSEKSAAEIKLSELTS 1193
GS +S+ + + I LE++I +E++++E + L+ EL + E EL
Sbjct: 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE 723
Query: 1194 KVNELEEDRLLSSGRTNKIPGLKTRMELAWHKEREEQQRLLQETSTLARDLRQTLFEVER 1253
++ R + ++ L+ R+ KE E + ++E + + L E E
Sbjct: 724 LSRQISALRKDLARLEAEVEQLEERIAQL-SKELTELEAEIEELEERLEEAEEELAEAEA 782
Query: 1254 ERDKERLEAKRRFDQMKKTTEEEQEECRRKLTE 1286
E ++ + ++ +++ K E +E R +LT
Sbjct: 783 EIEELEAQIEQLKEEL-KALREALDELRAELTL 814
Score = 32.0 bits (73), Expect = 2.8
Identities = 31/177 (17%), Positives = 69/177 (38%), Gaps = 9/177 (5%)
Query: 209 QVKDAKKTRRKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEK 268
Q+++ + E + E E L + + LLR EL+ + + +
Sbjct: 846 QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905
Query: 269 LEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTE-NEDLNDEKKSLSLRVREL 327
LE ++S+ LRR L L+ R++ L+ +E+ + + ++
Sbjct: 906 LESKRSE--LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKI 963
Query: 328 ETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQD 384
E + A R + L K+ + ++E EE+K+ +L + +++ +
Sbjct: 964 EDDEE------EARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTE 1014
Score = 31.6 bits (72), Expect = 3.3
Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 1141 SVDDLKAVITSLEQQISCMEDELSESRLETSRLKT---ELVSEKSAAEIKLSELTSKVNE 1197
++ LK + +L + + + EL+ E + L+ L +A E +L +L ++ E
Sbjct: 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
Query: 1198 LEEDRLLSSGRTNKIPGLKTRMELA---WHKEREEQQRLLQETSTLARDLRQTLFEVERE 1254
L ED + ++ L +E ER + L + +L + L E+E +
Sbjct: 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK 909
Query: 1255 RDKERLEAKRRFDQMKKTTEEEQE 1278
R + R E + +++ + +
Sbjct: 910 RSELRRELEELREKLAQLELRLEG 933
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 66.2 bits (162), Expect = 8e-11
Identities = 118/560 (21%), Positives = 240/560 (42%), Gaps = 65/560 (11%)
Query: 311 EDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKK 370
++L + K + R+ LE K++ E + +L E+ E E+++
Sbjct: 165 KNLGEVIKEIKRRIERLEKF---IKRTENIEELIKEKEKELEEVLREINEISSELPELRE 221
Query: 371 ELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKL 430
EL LE+E+ E+++ +E L+KELE + R L K+R+ E R E+L+ E
Sbjct: 222 ELEKLEKEVKELEELK-----EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276
Query: 431 EAEKKCREVCG-----------GMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDK 479
E E+K +E+ ++ ++ +EK L E +++ +KE +K
Sbjct: 277 ELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK 336
Query: 480 LERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEK 539
ER K + +E +L ++ K ++LER L + EK
Sbjct: 337 EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER--------LKKRLTGLTPEK 388
Query: 540 VSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEE--RYQRLYSVARDAFHPN 597
+ +E ++E+ + + + ++L+ A EE + + V
Sbjct: 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG-----R 443
Query: 598 LVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKS--SKITQLEA 655
+ +++ E + E +I EL+ ++ K L E ++ E + ++S K+ +L
Sbjct: 444 ELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAE 503
Query: 656 SIREERERATDLSVKAGSAASRELNQLREELTQLKKE---AQRNAEKVTKLERDKTSLEE 712
++E E+ +++ + E +L+E+L +LK E ++ EK+ +L++ LE+
Sbjct: 504 QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEK 563
Query: 713 NLKSKETQMT-----------KTISDLQTKCSTLE-------------KSLTAEQKQKAL 748
L E ++ +++ +L+ + LE K L E+K+
Sbjct: 564 KLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKK 623
Query: 749 KEKELKTKESEINVLKNQSSDNVTKQITELKTQY-EQEIKKLEDTLVQERQEYEDLTNRY 807
E+EL E+ + + + K++ EL+ +Y E+E ++L + ++ +E L
Sbjct: 624 LEEELDKAFEELAETEK-RLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAEL 682
Query: 808 DILEGEHVDIKASLVKEKEN 827
+ LE +IK +L K KE
Sbjct: 683 EELEKRREEIKKTLEKLKEE 702
Score = 58.9 bits (143), Expect = 2e-08
Identities = 119/511 (23%), Positives = 222/511 (43%), Gaps = 56/511 (10%)
Query: 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLK-LQQRVN 304
NE S ++ LR EL+ ++ + ++LE K +I SK E ++ L++R+
Sbjct: 210 NEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE 269
Query: 305 ELKTENEDLND---EKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEEL 361
ELK E E+L + E K L + E + +++ RE E ++L EE
Sbjct: 270 ELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
Query: 362 MDENEEMKKELRYLEEEMDEMQDHF-----REDQADEYSSLKKELEQTAKNCRILSFKLR 416
+ E EE ++ L L++++ E++ R + +E + K+ELE+ K L+
Sbjct: 330 IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT--PE 387
Query: 417 KSERRSEQLEAEKLEAEKKCREVCGGMEGVNKV--ERIQALEKELK-------------- 460
K E+ E+LE K E E++ ++ + + K E +A+E ELK
Sbjct: 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIE-ELKKAKGKCPVCGRELT 446
Query: 461 -------LANETAE--KLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLK 511
L TAE +++K+LKE +K + L K + ++L + LK
Sbjct: 447 EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLK 506
Query: 512 EATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADL 571
E +KL++ N + K K EK+ + + G + + L++ ++ A+L
Sbjct: 507 ELEEKLKKYNLEELEK-----KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAEL 561
Query: 572 REQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRA---------ESSTEKTQITGEL 622
++L EEE + L + F +++++ ++ E + EL
Sbjct: 562 EKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKEL 621
Query: 623 ESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREER-ERATDLSVKAGSAASRELNQ 681
+ L+ +L E + E + E ++ +LE EE E + ++ SREL
Sbjct: 622 KKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLEL----SRELAG 677
Query: 682 LREELTQLKKEAQRNAEKVTKLERDKTSLEE 712
LR EL +L+K + + + KL+ + E+
Sbjct: 678 LRAELEELEKRREEIKKTLEKLKEELEEREK 708
Score = 30.8 bits (70), Expect = 6.8
Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 26/211 (12%)
Query: 204 VDFILQVKDAKKTRRKENLETDTESLAGT-ETTDTTETTLVNDNEYSDQIDLLRHELDNM 262
+ + ++++ K E LE E E + + + + ++++ L+ +L +
Sbjct: 502 AEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAEL 561
Query: 263 KAKCEKLEREKSDIL--LRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSL 320
+ K ++LE E +++L L L + EL ELK ++L E+K L
Sbjct: 562 EKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKEL 621
Query: 321 SLRVRELETEAAAFKKSNAAEREAEA-----------------------LRTKLAAAEGL 357
EL+ ++ E L +LA
Sbjct: 622 KKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAE 681
Query: 358 CEELMDENEEMKKELRYLEEEMDEMQDHFRE 388
EEL EE+KK L L+EE++E + +E
Sbjct: 682 LEELEKRREEIKKTLEKLKEELEEREKAKKE 712
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 64.0 bits (156), Expect = 4e-10
Identities = 130/614 (21%), Positives = 248/614 (40%), Gaps = 64/614 (10%)
Query: 247 EYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTA----------SEL 296
+Y +LL+ + KAK E+LE + S++L +E + E
Sbjct: 168 KYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEE 227
Query: 297 LKLQQRVNELKTENEDLNDEKKSL-SLRVRELETEAAAFKKSNAAEREAEALRTKLAAAE 355
+L+Q + L+ +L +EK+ L L+ R LE E+ + E E L L E
Sbjct: 228 EELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELE 287
Query: 356 GLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKL 415
E L + E+++ LE +E L ++L+ + L KL
Sbjct: 288 EKIERLEELEREIEELEEELEG---------LRALLEELEELLEKLKSLEERLEKLEEKL 338
Query: 416 RKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKE 475
K E E+L EK E K E + ++ +EL+ E A + K L+E
Sbjct: 339 EKLESELEELAEEKNELAKLLEERL---------KELEERLEELEKELEKALERLKQLEE 389
Query: 476 ATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTP 535
A +L+ L + E E+L+K+L+E +LE
Sbjct: 390 AIQELKEELAELSAALEEI-----QEELEELEKELEELERELEE---------------- 428
Query: 536 SVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFH 595
+E+ ++ + E +++ +L + E+ ++L E+ LY + +
Sbjct: 429 -LEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELE 487
Query: 596 PNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEA 655
L + + ++R E + ++ E L L EA K++ E + + + + +LE
Sbjct: 488 EELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEE 547
Query: 656 SIREERERATDLSVKAGSAASRELNQLREELTQL---KKEAQRNAEKVTKLERDKTSLEE 712
+ + + ++ +EL +L EEL L K+E + E++ +L++ LEE
Sbjct: 548 LKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEE 607
Query: 713 NLKSKETQMTK-----TISDLQTKCSTLEKSLTAEQKQKALKEKE---LKTKESEINVLK 764
L E + ++L+ LE L Q L+E L+ E ++ L+
Sbjct: 608 RLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELE 667
Query: 765 NQSSDNVTKQITELK-TQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVK 823
+ + + E + + +E+++LE+ L Q R+E E+L + +E +++ S
Sbjct: 668 AEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELE-SRKA 726
Query: 824 EKENNHGRLQQTQK 837
E E L++ +K
Sbjct: 727 ELEELKKELEKLEK 740
Score = 57.8 bits (140), Expect = 3e-08
Identities = 109/564 (19%), Positives = 230/564 (40%), Gaps = 28/564 (4%)
Query: 218 RKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDIL 277
+ L D E L + E + + + + + L E++ ++ + +LE EK +
Sbjct: 193 QLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERL- 251
Query: 278 LRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKS 337
L + L ++ + EL+ E+L ++ + L RE+E +
Sbjct: 252 -EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGL 310
Query: 338 NAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSL 397
A E E L KL + E E+L ++ E+++ EL L EE +E +E
Sbjct: 311 RALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNE-----LAKLLEERLKE 365
Query: 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQA-LE 456
+E + + L L + ++ E ++ K E + + E + ++E+ LE
Sbjct: 366 LEERLEELEK--ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELE 423
Query: 457 KELKLANETAEKLQKDLKEATDKLERAN-----GGKPPKLGA-LPKTPSVETAEKLQKDL 510
+EL+ E +KL++ + + K G K P G LP+ E E + +L
Sbjct: 424 RELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELEL 483
Query: 511 KEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMR----DLQDSME 566
+E ++L R + + ++ E + +E + L++ +E
Sbjct: 484 EELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLE 543
Query: 567 READLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKT---QITGELE 623
+L+E+L+ + + R L + + + E + ++ +L+
Sbjct: 544 ELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLK 603
Query: 624 SLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLR 683
L+ +LS LE + E + E +++ + E + E E+ +L + L +L
Sbjct: 604 ELEERLSQLEELLQSLE--LSEAENELEEAEEELESELEKL-NLQAELEELLQAALEELE 660
Query: 684 EELTQLKKEAQRNAEKVTKLERDKTSLEE--NLKSKETQMTKTISDLQTKCSTLEKSLTA 741
E++ +L+ E +R +++ E+ + LEE L+ + Q+ + + +L K +E+ +
Sbjct: 661 EKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEE 720
Query: 742 EQKQKALKEKELKTKESEINVLKN 765
+ +KA E+ K E L+
Sbjct: 721 LESRKAELEELKKELEKLEKALEL 744
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 53.9 bits (130), Expect = 5e-07
Identities = 62/276 (22%), Positives = 141/276 (51%), Gaps = 16/276 (5%)
Query: 558 MRDLQDSMERE-ADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKT 616
+R+ + ++RE + L+ +LR E + S + + IEK + E+
Sbjct: 679 LRERLEGLKRELSSLQSELRRIENRLDE--LSQELSDASRKIGE---IEKEIEQLEQEEE 733
Query: 617 QITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAAS 676
++ LE L+ LS+LE E + ++++ E ++I +LE + + E DL +
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE---ARLSH 790
Query: 677 RELNQLREELTQLKKEAQRNAEKVTKLER---DKTSLEENLKSKETQMTKTISDLQTKCS 733
+ +++ EL++L++E R ++ ++E+ T +E L+ + ++ + DL+ +
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850
Query: 734 TLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQY---EQEIKKLE 790
++EK + +K E+EL+ E+ + L+++ D + K+ EL+ Q E++I++LE
Sbjct: 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGD-LKKERDELEAQLRELERKIEELE 909
Query: 791 DTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKE 826
+ ++R+ +L + + LE E +I+ +++E
Sbjct: 910 AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE 945
Score = 53.9 bits (130), Expect = 6e-07
Identities = 73/336 (21%), Positives = 138/336 (41%), Gaps = 28/336 (8%)
Query: 270 EREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELET 329
E + L RL ++ S + SEL +++ R++EL E D + + + + +LE
Sbjct: 672 EPAELQRLRERLEGLKRELS-SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730
Query: 330 EAAAFK-KSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFRE 388
E K + E + +L ++ + +EL EE++++L LEE +++++
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790
Query: 389 DQ----ADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCRE------ 438
+ E S L++E+ + R + KL + E LE E E +++ +
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850
Query: 439 -VCGGMEGVN-KVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPK 496
+ +E +N K E ++ +EL+ A E DLK+ D+LE K+ L
Sbjct: 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL-- 908
Query: 497 TPSVETAEKLQKDLKEAT-------DKLERANGGKPPKLGALPKTPSVEKVSRETLTRGG 549
+E K +LK ++E G V+ +
Sbjct: 909 EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIR 968
Query: 550 SQEDPTVLMRDLQD---SMEREADLREQLRFAEEER 582
+ E V M +Q+ ++R +L+E+ EEER
Sbjct: 969 ALEP--VNMLAIQEYEEVLKRLDELKEKRAKLEEER 1002
Score = 53.9 bits (130), Expect = 6e-07
Identities = 75/364 (20%), Positives = 138/364 (37%), Gaps = 49/364 (13%)
Query: 450 ERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKD 509
+ + +EL+ E E+L + E +LER + E AE+ Q
Sbjct: 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRER-------------EKAERYQAL 216
Query: 510 LKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREA 569
LKE K E + AL + E + R+ + E T + +L+ +E
Sbjct: 217 LKE---KREYEGYELLKEKEALER--QKEAIERQLASLEEELEKLTEEISELEKRLEEIE 271
Query: 570 DLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKL 629
L E+L ++ + L + L++++ E E + + + +L
Sbjct: 272 QLLEEL----NKKIKDLGEE----------EQLRVKEKIGELEAEIASLERSIAEKEREL 317
Query: 630 SALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQL 689
E K E +I + ++I +LE I EER+R L+ + EL LR EL ++
Sbjct: 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE-ELEDLRAELEEV 376
Query: 690 KKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALK 749
KE +++ L+ + + ++ + +LQ L ++
Sbjct: 377 DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD---LNAAIAGIE 433
Query: 750 EKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDI 809
K N+ + + E+K Q E ++++L L + QE DL YD
Sbjct: 434 AK------------INELEEEKEDKALEIKKQ-EWKLEQLAADLSKYEQELYDLKEEYDR 480
Query: 810 LEGE 813
+E E
Sbjct: 481 VEKE 484
Score = 53.1 bits (128), Expect = 1e-06
Identities = 71/320 (22%), Positives = 137/320 (42%), Gaps = 39/320 (12%)
Query: 212 DAKKTRRKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLER 271
D KK + E LE E++ L+ D E Q++ LR E + + L +
Sbjct: 169 DRKKEKALEELEEVEENIE--------RLDLIID-EKRQQLERLRRE-REKAERYQALLK 218
Query: 272 EKSD----ILLRRLASMETTTSKTTA------SELLKLQQRVNELKTENEDLNDEKKSLS 321
EK + LL+ ++E EL KL + ++EL+ E++ + L+
Sbjct: 219 EKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELN 278
Query: 322 LRVREL-ETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMD 380
++++L E E K+ + L ++A+ E E E E+ ++ L LE E+D
Sbjct: 279 KKIKDLGEEEQLRVKE------KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID 332
Query: 381 EMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440
+ E L++E+E+ K L+ + + + E L AE E +K+ E
Sbjct: 333 K--------LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET- 383
Query: 441 GGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSV 500
E + E+++ L++E+ ++LQ++L+ +++L N + +
Sbjct: 384 -RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE--LE 440
Query: 501 ETAEKLQKDLKEATDKLERA 520
E E ++K+ KLE+
Sbjct: 441 EEKEDKALEIKKQEWKLEQL 460
Score = 50.8 bits (122), Expect = 5e-06
Identities = 76/384 (19%), Positives = 152/384 (39%), Gaps = 58/384 (15%)
Query: 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEK--KCREVCGGMEGVNKVERIQAL 455
+ELE+ +N L + + ++ E+L E+ +AE+ + EG ++ +AL
Sbjct: 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEAL 235
Query: 456 EKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATD 515
E++ + L+++L++ T+++ + E++++ L+E
Sbjct: 236 ERQKEAIERQLASLEEELEKLTEEISELE----------------KRLEEIEQLLEELNK 279
Query: 516 KLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQL 575
K++ + L + ++ E + S + R+L+D+ ER A L ++
Sbjct: 280 KIKDLGEEE-----QLRVKEKIGELEAEIASLERSIAE---KERELEDAEERLAKLEAEI 331
Query: 576 RFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSAL--- 632
E L + ++ E+ R + ++T E LK +L L
Sbjct: 332 DKLLAE-------------IEELEREIEEERKR------RDKLTEEYAELKEELEDLRAE 372
Query: 633 -EAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKK 691
E K+F E +LE RE E +L EL +L EEL L
Sbjct: 373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ-----EELQRLSEELADLNA 427
Query: 692 EAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEK 751
K+ +LE +K +K +E ++ + +DL S E+ L +++ EK
Sbjct: 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL----SKYEQELYDLKEEYDRVEK 483
Query: 752 ELKTKESEINVLKNQSSDNVTKQI 775
EL + E+ + Q+ + +
Sbjct: 484 ELSKLQRELAEAEAQARASEERVR 507
Score = 50.5 bits (121), Expect = 6e-06
Identities = 80/384 (20%), Positives = 151/384 (39%), Gaps = 64/384 (16%)
Query: 299 LQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLC 358
+Q++ L+ E E + ++L RE E +K A ER+ EA+ +LA+ E
Sbjct: 196 KRQQLERLRREREKA-ERYQALLKEKREYEGYELLKEK-EALERQKEAIERQLASLEEEL 253
Query: 359 EELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKS 418
E+L +E E++K L +E+ ++E+ ++ +E +K+++ + L + +
Sbjct: 254 EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEK 313
Query: 419 ERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATD 478
ER E E + E + + I+ LE+E++ + +KL ++ E +
Sbjct: 314 ERELEDAEERLAKLEAEID---------KLLAEIEELEREIEEERKRRDKLTEEYAELKE 364
Query: 479 KLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVE 538
+LE E++ K+ E D+L+ E
Sbjct: 365 ELED----------------LRAELEEVDKEFAETRDELKDY----------------RE 392
Query: 539 KVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNL 598
K+ + + + L +LQ E ADL + E
Sbjct: 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA------------------ 434
Query: 599 VQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAE--KKKFETDILEKSSKITQLEAS 656
+ ++E+ + + + E + +LE L + LS E E K E D +EK Q E +
Sbjct: 435 -KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
Query: 657 IREERERATDLSVKAGSAASRELN 680
E + RA++ V+ G A L
Sbjct: 494 EAEAQARASEERVRGGRAVEEVLK 517
Score = 50.1 bits (120), Expect = 9e-06
Identities = 70/289 (24%), Positives = 120/289 (41%), Gaps = 31/289 (10%)
Query: 207 ILQVKDAKKTRRKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKC 266
L+ ++ K R E LE D SL +E E +I+ L +L ++
Sbjct: 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK-----ELEARIEELEEDLHKLEEAL 781
Query: 267 EKLER----EKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSL 322
LE + + L+ +E S+ A L +++Q++N L E E L E + L
Sbjct: 782 NDLEARLSHSRIPEIQAELSKLEEEVSRIEAR-LREIEQKLNRLTLEKEYLEKEIQELQE 840
Query: 323 RVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEM 382
+ +L+ + + +K E E L K E EEL +++ L L++E DE+
Sbjct: 841 QRIDLKEQIKSIEK------EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
Query: 383 QDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAE--------- 433
+ RE + + L+ ++E+ K L KL E ++E K E E
Sbjct: 895 EAQLRELE-RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL 953
Query: 434 KKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLER 482
+ + +E E I+ALE LA + E++ K L E +K +
Sbjct: 954 EDVQAELQRVE-----EEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK 997
Score = 49.7 bits (119), Expect = 1e-05
Identities = 62/319 (19%), Positives = 127/319 (39%), Gaps = 53/319 (16%)
Query: 615 KTQITGELESLKSKLSALE-------AEKKKFETDILEKSSKITQLEASIREERERATDL 667
EL+ L+ +L L+ +E ++ E + E S +++ I E + L
Sbjct: 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728
Query: 668 SVKAGSAASR------ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKE--- 718
+ R +L+ L +E+ +K E + ++ +LE D LEE L E
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
Query: 719 ------------TQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQ 766
+++ + +S ++ + +E+ L +K EKE++ + + LK Q
Sbjct: 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848
Query: 767 SSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKE 826
K+I L + E+ ++LE+ R LE D+K KE++
Sbjct: 849 IKSI-EKEIENLNGKKEELEEELEELEAALRD-----------LESRLGDLK----KERD 892
Query: 827 NNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRA 886
+L++ ++ + + KKRK +E +L+ + L+E+
Sbjct: 893 ELEAQLRELERKIEELEAQIEKKRKRLSELKA---------KLEALEEELSEIEDPKGED 943
Query: 887 SQLPPTPPTTEESQNRIRR 905
++P + E+ Q ++R
Sbjct: 944 EEIPEEELSLEDVQAELQR 962
Score = 49.3 bits (118), Expect = 1e-05
Identities = 77/336 (22%), Positives = 132/336 (39%), Gaps = 43/336 (12%)
Query: 504 EKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQD 563
+++ L E + +L A+ K+G + K + E L +E L DL
Sbjct: 698 RRIENRLDELSQELSDASR----KIGEIEKEIEQLEQEEEKL-----KERLEELEEDLSS 748
Query: 564 -SMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYL---QIEKVRAESS---TEKT 616
E E E + +L L +I +++AE S E +
Sbjct: 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVS 808
Query: 617 QITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAAS 676
+I L ++ KL+ L EK+ E +I E + L+ I+ + +L+ K
Sbjct: 809 RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE 868
Query: 677 R------ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQT 730
L L L LKKE ++ +LER LE ++ K ++ S+L+
Sbjct: 869 ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL----SELKA 924
Query: 731 KCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLE 790
K LE+ L E E E E + S ++V ++ + E+EI+ LE
Sbjct: 925 KLEALEEEL---------SEIEDPKGEDEEIPEEELSLEDVQAELQRV----EEEIRALE 971
Query: 791 DTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKE 826
+ QEYE++ R D L+ + A L +E++
Sbjct: 972 PVNMLAIQEYEEVLKRLDELKEKR----AKLEEERK 1003
Score = 49.3 bits (118), Expect = 2e-05
Identities = 59/295 (20%), Positives = 111/295 (37%), Gaps = 42/295 (14%)
Query: 557 LMRDLQDSMEREADLREQLRFAEEERYQRLYSVARD--------AFHPNLVQYLQIEKVR 608
++ + + +ER RE+ ERYQ L R+ Q IE+
Sbjct: 192 IIDEKRQQLERLRREREKA-----ERYQALLKEKREYEGYELLKEKEALERQKEAIERQL 246
Query: 609 AESSTEKTQITGELESLKSKLSALEA---------------EKKKFETDILEKSSKITQL 653
A E ++T E+ L+ +L +E E+ + + I E ++I L
Sbjct: 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASL 306
Query: 654 EASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEEN 713
E SI E+ D A L +L E+ +L E + ++ + + + L E
Sbjct: 307 ERSIAEKERELED--------AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEE 358
Query: 714 LKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NV 771
+ ++ ++L+ ++ + K +EK K K EIN LK +
Sbjct: 359 YAELKEELEDLRAELEEVD---KEFAETRDELKDYREKLEKLKR-EINELKRELDRLQEE 414
Query: 772 TKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKE 826
++++E I +E + + +E ED E + + A L K ++
Sbjct: 415 LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469
Score = 47.0 bits (112), Expect = 6e-05
Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 23/196 (11%)
Query: 246 NEYSDQIDLLRHELDNMKAKCEKLE------REKSDILLRRLASMETTTSKTTASELLKL 299
++ +I+ L E++ + + +KL +E+ + L L ++ T EL
Sbjct: 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE-FAETRDELKDY 390
Query: 300 QQRVNELKTENEDLN-------DEKKSLSLRVRELETEAAAFK-KSNAAEREAEALRTKL 351
++++ +LK E +L +E + LS + +L A + K N E E E ++
Sbjct: 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450
Query: 352 AAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRIL 411
E E+L + + ++EL L+EE D ++ E S L++EL + R
Sbjct: 451 KKQEWKLEQLAADLSKYEQELYDLKEEYDRVE--------KELSKLQRELAEAEAQARAS 502
Query: 412 SFKLRKSERRSEQLEA 427
++R E L+A
Sbjct: 503 EERVRGGRAVEEVLKA 518
Score = 45.1 bits (107), Expect = 3e-04
Identities = 48/274 (17%), Positives = 120/274 (43%), Gaps = 18/274 (6%)
Query: 622 LESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQ 681
++ + +L L E++K E + + E + + A + +A R+L
Sbjct: 193 IDEKRQQLERLRREREKAE-RYQALLKEKREYEGYELLKEKEALERQKEAIE---RQLAS 248
Query: 682 LREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSK----ETQMTKTISDLQTKCSTLEK 737
L EEL +L +E +++ ++E+ L + +K + ++ + I +L+ + ++LE+
Sbjct: 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER 308
Query: 738 SLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITEL---KTQYEQEIKKLEDTLV 794
S+ ++++ E+ L E+EI+ L + + + ++I E + + +E +L++ L
Sbjct: 309 SIAEKERELEDAEERLAKLEAEIDKLLAEI-EELEREIEEERKRRDKLTEEYAELKEELE 367
Query: 795 QERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITT 854
R E E++ + E D + L K K + ++ + +R + +
Sbjct: 368 DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA 427
Query: 855 EPSVAKEEHSKSYQLQTTLQRLTEVAAELKRASQ 888
+ + + + +L+ + A E+K+
Sbjct: 428 AIAGIEAKIN---ELEE---EKEDKALEIKKQEW 455
Score = 36.6 bits (85), Expect = 0.10
Identities = 38/184 (20%), Positives = 79/184 (42%), Gaps = 16/184 (8%)
Query: 640 ETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEK 699
E ++ EKS +T + R + EL +LRE L LK+E +
Sbjct: 645 EGELFEKSGAMTGGSRAPRGGILFSRSEP--------AELQRLRERLEGLKRELSSLQSE 696
Query: 700 VTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESE 759
+ ++E + + L + + ++ I +++ + LE+ +++ E++L + E E
Sbjct: 697 LRRIE----NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
Query: 760 INVLKNQSSDNVTK--QITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDI 817
I +K++ + + ++ E + E+ + LE L R ++ LE E I
Sbjct: 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELSKLEEEVSRI 810
Query: 818 KASL 821
+A L
Sbjct: 811 EARL 814
Score = 31.2 bits (71), Expect = 4.7
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 1136 TSRANSVDDLKAVITSLEQQISCMEDELSESRLETSRLKTELVSEKSAAEIKLSELTSKV 1195
+ L+ ++E+Q++ +E+EL + E S EL E L EL K+
Sbjct: 226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEIS----ELEKRLEEIEQLLEELNKKI 281
Query: 1196 NELEEDRLLSSGRTNKIPGLKTRMELAWHKEREEQQRLLQETSTLARDLRQTLFEVERER 1255
+L E+ L +K ++ E +R + E D + L ++E E
Sbjct: 282 KDLGEEEQLR---------VKEKIG-ELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
Query: 1256 DKERLEAKRRFDQMKKTTEEEQEECRRKLTE 1286
DK E +++++ EEE++ R KLTE
Sbjct: 332 DKLLAEI----EELEREIEEERKR-RDKLTE 357
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 53.0 bits (128), Expect = 8e-07
Identities = 45/244 (18%), Positives = 94/244 (38%), Gaps = 28/244 (11%)
Query: 596 PNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEA 655
V +E++ + E +I E++ L+ ++S LE E K+ E +I +
Sbjct: 76 KKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIER-LEPWGNFDL 134
Query: 656 SIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLK 715
+ +SV G+ +L +L+ E N E ++ + + LK
Sbjct: 135 DLSLLLGFKY-VSVFVGTVPEDKLEELKLE------SDVENVEYISTDKGYVYVVVVVLK 187
Query: 716 SKETQMTKTISDLQ-TKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQ 774
++ + + L + E+ +E ++ ++EL+ E E L ++
Sbjct: 188 ELSDEVEEELKKLGFERLELEEEGTPSELIRE--IKEELEEIEKERESLL--------EE 237
Query: 775 ITELKTQYEQEIKKLEDTLVQERQEYEDL-----TNRYDILEG----EHVDIKASLVKEK 825
+ EL +Y +E+ L + L E + E L T++ +EG + V L+ +
Sbjct: 238 LKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKELIDKA 297
Query: 826 ENNH 829
Sbjct: 298 TGGS 301
Score = 40.3 bits (95), Expect = 0.008
Identities = 52/292 (17%), Positives = 106/292 (36%), Gaps = 47/292 (16%)
Query: 243 VNDNEYSDQIDLLRHELDNMKAKCEKLER--EKSDILLRRLASMETTTSKTTAS----EL 296
+ + ++++ LR L + +KL K + L + + + EL
Sbjct: 36 LKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEEL 95
Query: 297 LKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEG 356
K+++ + EL+ E +L +E K L + LE + + +
Sbjct: 96 EKIEKEIKELEEEISELENEIKELEQEIERLE----PWGNFDLDLSLLLGFKYVSVFVGT 151
Query: 357 LCEELMDENEEMKKELRYLEEEMDEMQDHF------REDQADEYSSLKKE--LEQTAKNC 408
+ E+ E +++ ++ +E + + +E + LKK +
Sbjct: 152 VPEDK-LEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEE 210
Query: 409 RILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANET--A 466
S +R+ + E++E E+ ++ +E+ K E L E A
Sbjct: 211 GTPSELIREIKEELEEIEKERESLLEELKELA------KKYLEELLALYEY-LEIELERA 263
Query: 467 EKLQKDLKEATDK---LERANGGKPPKLGALPKTPSVETAEKLQKDLKEATD 515
E L K LK TDK +E G +P + +KL++ + +AT
Sbjct: 264 EALSKFLK--TDKTFAIE----------GWVP----EDRVKKLKELIDKATG 299
Score = 31.1 bits (71), Expect = 5.4
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 751 KELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDIL 810
+L E + +S + + K + E + E+EIK+LE+ + + E ++L + L
Sbjct: 67 PKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126
Query: 811 E--------------GEHVDIKASLVKE 824
E ++V + V E
Sbjct: 127 EPWGNFDLDLSLLLGFKYVSVFVGTVPE 154
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 53.1 bits (128), Expect = 9e-07
Identities = 128/541 (23%), Positives = 217/541 (40%), Gaps = 102/541 (18%)
Query: 233 ETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTT 292
ET D + L E ++++ L E+++++ + ERE+ ++
Sbjct: 234 ETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREEL---------------- 277
Query: 293 ASELLKLQQRVNELKTENEDLNDE-------KKSLSLRVRELETEAAAFKKS-------- 337
A E+ L++R+ EL+ E +DL E +++ R ELE +
Sbjct: 278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAA 337
Query: 338 NAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRY--------------LEEEMDEMQ 383
A EAE+LR E EEL +E E++ EL LEEE++E++
Sbjct: 338 QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELR 397
Query: 384 DHF------REDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCR 437
+ F + D L++E ++ + L LR + R E EAE L KC
Sbjct: 398 ERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE--EAEALLEAGKCP 455
Query: 438 EVCGGMEGVNKV-------ERIQALEKELKLANETAEKLQ------KDLKEATDKLER-- 482
E +EG V ER++ LE EL+ E E+++ +DL EA D++ER
Sbjct: 456 ECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLE 515
Query: 483 ANGGKPPKLGALPKTPSVETAEKLQKDLKEATD-------------KLERANGGKPPKLG 529
+L A + E E+ ++ + A + + E ++
Sbjct: 516 ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVA 575
Query: 530 ALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRL--- 586
L + K E+L R + D +D +ER + RE L +ER +RL
Sbjct: 576 ELNSKLAELKERIESLER---IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEK 632
Query: 587 ---YSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDI 643
F ++ + +K RAE LE ++ KL L E+ + +I
Sbjct: 633 RERKRELEAEFDEARIEEAREDKERAEEY---------LEQVEEKLDELREERDDLQAEI 683
Query: 644 LEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEA-QRNAEKVTK 702
+++ +LE +RE RE + V+A A E +L L+ E QRN E + +
Sbjct: 684 GAVENELEELE-ELRERREALEN-RVEALEALYDEAEELESMYGDLRAELRQRNVETLER 741
Query: 703 L 703
+
Sbjct: 742 M 742
Score = 45.4 bits (108), Expect = 2e-04
Identities = 109/550 (19%), Positives = 212/550 (38%), Gaps = 99/550 (18%)
Query: 323 RVRELETEAAAFKKSNAAEREAE-------ALRTKLA---------------AAEGL--C 358
RV + + K+ E+E + L ++LA A E
Sbjct: 180 RVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEA 239
Query: 359 EELMDENEEMKKELRYLEEEMDEMQDHFRE-------------DQADEYSSLKKELEQTA 405
+E+++E+EE ++EL LE E++++++ E D + L++E +
Sbjct: 240 DEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLL 299
Query: 406 KNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNK-----VERIQALEKELK 460
+ E R E+LE E + E + N+ E LE+ +
Sbjct: 300 AEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE 359
Query: 461 LANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERA 520
E A +L+ +L+EA + VE + ++L+E ++L
Sbjct: 360 ELREEAAELESELEEAREA--------------------VEDRREEIEELEEEIEELRER 399
Query: 521 NGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEE 580
G P + G +++ L + + EREA+L LR A E
Sbjct: 400 FGDAP-------------------VDLGNAEDFLEELREERDELREREAELEATLRTARE 440
Query: 581 --ERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKK 638
E + L + V+ + E ++ ELE L+ ++ +E ++
Sbjct: 441 RVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLER 500
Query: 639 FET---------DILEKSSKITQL----EASIREERERATDLSVKAGSAASRELNQLREE 685
E + E+ + +L +I E+RERA +L +A + E + RE
Sbjct: 501 AEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEA-EAEEKREA 559
Query: 686 LTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMT--KTISDLQTKCSTLEKSLTAEQ 743
+ ++EA+ E+V +L L+E ++S E T I+D + + L + A
Sbjct: 560 AAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALA 619
Query: 744 KQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDL 803
+ + + L K L+ + + ++ E K + E+ ++++E+ L + R+E +DL
Sbjct: 620 ELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDL 679
Query: 804 TNRYDILEGE 813
+E E
Sbjct: 680 QAEIGAVENE 689
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 50.4 bits (121), Expect = 6e-06
Identities = 116/550 (21%), Positives = 213/550 (38%), Gaps = 75/550 (13%)
Query: 298 KLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKS--------NAAEREAEALRT 349
+LQ + +L+ E E N L + + + A +K+ + A+REA L T
Sbjct: 353 RLQSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLST 412
Query: 350 KLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCR 409
+L + EEL D+ E +++E + L++E+ ++ D E + + L+K +
Sbjct: 413 ELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVH-ELEKARRRLEAEKD 471
Query: 410 ILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKL 469
L L ++E E E++ L A+ + ++ +E R+ E+E + T +
Sbjct: 472 ELQAALEEAEAALELEESKVLRAQVELSQIRSEIE-----RRLAEKEEEFE---NTRKNH 523
Query: 470 QKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLG 529
Q+ ++ LE G K + +KL+ D+ E L+ AN
Sbjct: 524 QRAIESLQATLEAEAKG---------KAEASRLKKKLEGDINELEIALDHANKANAEAQK 574
Query: 530 ALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSV 589
+ K Q+ L +++ D REQL AE +
Sbjct: 575 NVKK----------------YQQQVKELQTQVEEEQRAREDAREQLAVAERRA-----TA 613
Query: 590 ARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSK 649
Q E+ R ++ TE + + + L ++ S+L A+K+K E ++ S
Sbjct: 614 LEAELEELRSALEQAERARKQAETELAEASERVNELTAQNSSLIAQKRKLEGELAALQSD 673
Query: 650 ITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTS 709
+ + ++ ERA A + +L EEL Q ++ +Q +LE
Sbjct: 674 LDEAVNELKAAEERAK--------KAQADAARLAEELRQEQEHSQHLERLRKQLESQVKE 725
Query: 710 LEENLKSKETQMT----KTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKN 765
L+ L E K I L+ + LE L EQ++ A +K L+ E + L+
Sbjct: 726 LQVRLDEAEAAALKGGKKMIQKLEARVRELEAELDGEQRRHAETQKNLRKMERRVKELQF 785
Query: 766 QSSDN----------VTKQITELKTQ------YEQEIKKLEDTLVQERQEYEDLTNRYDI 809
Q ++ V K ++KT E+ + + ++E ED R D
Sbjct: 786 QVEEDKKNLERLQDLVDKLQAKIKTYKRQLEEAEEVAQINLSKYRKAQRELEDAEERADT 845
Query: 810 LEGEHVDIKA 819
E ++A
Sbjct: 846 AERSLNKLRA 855
Score = 36.2 bits (84), Expect = 0.12
Identities = 41/198 (20%), Positives = 87/198 (43%), Gaps = 8/198 (4%)
Query: 604 IEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERER 663
EK +++ E + +L+ + E + K+ E+ + E K+ +L+ + + +
Sbjct: 150 AEKEKSQLQAEVDDLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQ 209
Query: 664 ATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTK 723
+ L S S QL E Q+ ++ ++ ++LE K SLEE + + +
Sbjct: 210 KSRLQ----SENSDLTRQLEEAEAQVSNLSKLKSQLESQLEEAKRSLEEESRERANLQAQ 265
Query: 724 TISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQ---SSDNVTKQITELKT 780
+ L+ +L + L E + KA E++L +EI +++ +++ ELK
Sbjct: 266 -LRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQWRSKFESEGALRAEELEELKK 324
Query: 781 QYEQEIKKLEDTLVQERQ 798
+ Q+I +LE+
Sbjct: 325 KLNQKISELEEAAEAANA 342
Score = 33.1 bits (76), Expect = 1.2
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 18/209 (8%)
Query: 604 IEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERER 663
+E+ + E + + EL L SKL +A + + I E ++I +LE + ER
Sbjct: 2 LERQKRELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERA- 60
Query: 664 ATDLSVKAGSAASRELNQLREEL--------TQLKKEAQRNAEKVTKLERDKTSLEENLK 715
A + KA + SREL +L E L Q++ +R AE + KL +D LEE
Sbjct: 61 ARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAE-LAKLRKD---LEEANL 116
Query: 716 SKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQI 775
E + Q + L + + QKQKA EKE ++E++ L Q QI
Sbjct: 117 QHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLD-----QI 171
Query: 776 TELKTQYEQEIKKLEDTLVQERQEYEDLT 804
+ K E++ K+LE L + + + ++L
Sbjct: 172 AKAKLNAEKKAKQLESQLSELQVKLDELQ 200
Score = 30.4 bits (69), Expect = 7.6
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 13/155 (8%)
Query: 615 KTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSA 674
K+++ ELE L +E E+ LEK K + + E + + +L +
Sbjct: 351 KSRLQSELEDL-----QIELERANAAASELEKKQK--NFDKILAEWKRKVDELQAEL-DT 402
Query: 675 ASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEE---NLKSKETQMTKTISDLQTK 731
A RE L EL +LK E + ++V L R+ +L++ +L + + + + +L+
Sbjct: 403 AQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKA 462
Query: 732 CSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQ 766
LE ++ Q AL+E E + E VL+ Q
Sbjct: 463 RRRLEAEK--DELQAALEEAEAALELEESKVLRAQ 495
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 50.5 bits (120), Expect = 6e-06
Identities = 107/576 (18%), Positives = 222/576 (38%), Gaps = 32/576 (5%)
Query: 315 DEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRY 374
D KK+ + R E +A +K+ A + A + A E EE + K E
Sbjct: 1174 DAKKAEAARKAEEVRKAEELRKAEDARKAEAARK---AEEERKAEEARKAEDAKKAEAVK 1230
Query: 375 LEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEK 434
EE + + ++ + + + ++ E+ K+E + E +K E +K
Sbjct: 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK 1290
Query: 435 KCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGAL 494
K E E K + + +E K A+E +K ++ K+A ++A K
Sbjct: 1291 KADEA-KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK------- 1342
Query: 495 PKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDP 554
+ AE + + + A D+ E A + A K +K + + ++
Sbjct: 1343 ------KAAEAAKAEAEAAADEAEAA---EEKAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
Query: 555 TVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTE 614
+ ++ ++ +L++ A +++ A + + + E +A+ + +
Sbjct: 1394 DEAKKKAEEDKKKADELKKAA--AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
Query: 615 KTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSA 674
K + + E K K A EA+K E++ K + + E +++A + A
Sbjct: 1452 KAEEAKKAEEAKKK--AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA--E 1507
Query: 675 ASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCST 734
A ++ ++ ++ K + + AE+ K + K + EE K+ E + + + + K
Sbjct: 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA-EEKKKADELKKAEELKKAEEKKKA 1566
Query: 735 LEKSLTAEQKQKALKEKEL--KTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDT 792
E E K AL++ E K +E+ I + + + E K E +IK E
Sbjct: 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE-- 1624
Query: 793 LVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKI 852
+++ +E + + E E L K +E N + + K K+ + +K
Sbjct: 1625 -LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
Query: 853 TTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRASQ 888
+ A E K + + L + AE K+ ++
Sbjct: 1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
Score = 46.3 bits (109), Expect = 1e-04
Identities = 120/574 (20%), Positives = 233/574 (40%), Gaps = 59/574 (10%)
Query: 263 KAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSL 322
+A ++ E + A + +K A K + + + ++KK
Sbjct: 1353 EAAADEAEAAEEK---AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK---- 1405
Query: 323 RVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKK--ELRYLEEEMD 380
+ EL+ AAA KK++ A+++AE + K A+ EE +E KK E + EE
Sbjct: 1406 KADELKKAAAAKKKADEAKKKAEEKK-KADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
Query: 381 EMQDHFREDQADEYSSLKK---ELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCR 437
+ ++ + D+A + + K E ++ A+ + + + +K+ ++ + K E K
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
Query: 438 EVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKT 497
+ E K + + E E K A+E + + E K E A + K AL K
Sbjct: 1525 DEAKKAEEAKKADEAKKAE-EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA 1583
Query: 498 PSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVL 557
+ AE+ ++E E K + K K+ E L + E+
Sbjct: 1584 EEAKKAEE--ARIEEVMKLYEEEKKMKAEEA----KKAEEAKIKAEELKK---AEEEKKK 1634
Query: 558 MRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQ 617
+ L+ E E+L+ AEEE + A+ A + +K +AE + + +
Sbjct: 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA---------EEDKKKAEEAKKAEE 1685
Query: 618 ITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASR 677
+ A EA KK+ E++ K +L+ EE+++A +L +
Sbjct: 1686 ---------DEKKAAEALKKE-----AEEAKKAEELKKKEAEEKKKAEELK------KAE 1725
Query: 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEK 737
E N+++ E + KKEA+ + +K + ++D+ ++ K+ + K + K + +E+
Sbjct: 1726 EENKIKAE--EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
Query: 738 SLTAEQKQKALKEKELKTKESEINVLKNQSSDNV-TKQITELKTQYEQEIKKLEDT---L 793
L E+ +K E + K K+ N I + K + IK++ D+
Sbjct: 1784 ELD-EEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQ 1842
Query: 794 VQERQEYEDLTNRYDILEGEHVDIKASLVKEKEN 827
++E +E + GE + +A KEK+
Sbjct: 1843 LEEADAFEKHKFNKNNENGEDGNKEADFNKEKDL 1876
Score = 36.3 bits (83), Expect = 0.15
Identities = 114/623 (18%), Positives = 221/623 (35%), Gaps = 43/623 (6%)
Query: 393 EYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERI 452
++ + + A + K + EA K E KK E E K E
Sbjct: 1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDA 1139
Query: 453 QALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQK--DL 510
+ E+ K + ++ + ++A E K A K V AE+L+K D
Sbjct: 1140 RKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDA 1199
Query: 511 KEATDKLERANGGKPPKLGALPKTPSVEKVSR-------ETLTRGGSQEDPTVLMRDLQD 563
++A + K + E V + + +E +R ++
Sbjct: 1200 RKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
Query: 564 SMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELE 623
+ R+ AEE R A + + + + EK +A+ + +K + + +
Sbjct: 1260 ARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAE-EKKKADEAKKKAEEAKKAD 1318
Query: 624 SLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLR 683
K K AE+ K + D +K ++ + A + A +A + + +
Sbjct: 1319 EAKKK-----AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
Query: 684 EELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQ 743
EE + A++ AE+ K + K EE+ K + + K + K E
Sbjct: 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD----------ELKKAAAAKKKADEA 1423
Query: 744 KQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDL 803
K+KA E++ K E++ + + +D K+ E K E + K E E ++ +
Sbjct: 1424 KKKA--EEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
Query: 804 TNRYDIL--EGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAKE 861
+ D + E KA K+ + + +K K +KK + + AK+
Sbjct: 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Query: 862 EHSKSYQLQTTLQRLTEVAAELKRASQLPPTPPTTEESQNRIRRAAFAAKKSVSTESDHT 921
K + + A E K+A + EE +N R A AKK+ +
Sbjct: 1542 AEEKKKADELKKAEELKKAEEKKKAEE----AKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
Query: 922 GESSSRALHRKGSLYRKSLSLE-QTSQLAQEENIWKMTDDNDSSLTSFQSIDDAYENVKY 980
+ K +K+ + + +L + E K + Q E K
Sbjct: 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVE---------QLKKKEAEEKKK 1648
Query: 981 TNYGRRETSMDRLEAEEKARKSD 1003
++ ++++A E+A+K++
Sbjct: 1649 AEELKKAEEENKIKAAEEAKKAE 1671
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 50.5 bits (121), Expect = 6e-06
Identities = 33/184 (17%), Positives = 74/184 (40%), Gaps = 9/184 (4%)
Query: 631 ALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLK 690
L ++ E + +K Q E + + + + A L Q R +L +L+
Sbjct: 604 ELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAE-AEARTALKQARLDLQRLQ 662
Query: 691 KEAQRNAEKVTK-LERDKTSLEENLKSKETQMT----KTISDLQTKCSTLEKSLTAEQKQ 745
E Q +K+ + K E L+ + Q+ + + L+ + T +
Sbjct: 663 NEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAK 722
Query: 746 KALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKL---EDTLVQERQEYED 802
+ E EL + ++++ + ++ ELK QY++E+ L +T+ + +++ E+
Sbjct: 723 WQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEE 782
Query: 803 LTNR 806
L
Sbjct: 783 LETT 786
Score = 48.9 bits (117), Expect = 2e-05
Identities = 106/619 (17%), Positives = 218/619 (35%), Gaps = 80/619 (12%)
Query: 245 DNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVN 304
+++ + D L EL AK E L L + +L ++
Sbjct: 301 EDQLKEARDELNQELSAANAKLAADRSE-----LELLEDQKGAFEDADIEQLQADLDQLP 355
Query: 305 ELKTENEDLNDEKKSLSLRVREL--ETEAAAFKKSNAAEREAEALRTKLAAA-EGLCEEL 361
+++E E++ +L+ + +++ + E K ER+ E +LAA E +
Sbjct: 356 SIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQK 415
Query: 362 MDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKEL---------EQTAKNCRILS 412
E+++ L ++++ + F E++ + L + + + I
Sbjct: 416 AAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEIND 475
Query: 413 FKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKD 472
L K++ EQ EA + + + R++ + R +ALE L+ A +L++
Sbjct: 476 EALEKAQEEQEQAEANVEQLQSELRQL--------RKRRDEALEA-LQRAERRLLQLRQA 526
Query: 473 LKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKL--------ERANGGK 524
L E +L P+ G+L E + K + +L + G
Sbjct: 527 LDELELQLS-------PQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEGSD 579
Query: 525 PPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQL--RFAEEER 582
L + V +E LQ ++ ++ EQL AE E
Sbjct: 580 SDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEE 639
Query: 583 YQRLYSVARDAFHPN--LVQYLQ---------IEKVRAES----STEKTQITGELESLKS 627
+R + AR A +Q LQ +E AE T+ Q+ +L+ L
Sbjct: 640 QKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLE 699
Query: 628 KL-SALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREEL 686
+ + LEA K F E+ +K +E + + + + A + A L +L+++
Sbjct: 700 QQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQY 759
Query: 687 TQLKKEAQRNAEKVTKLERDKTSLEENLK--------------------SKETQMTKTIS 726
+ + V +L+R LE ++ + +
Sbjct: 760 DRELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERP 819
Query: 727 DLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEI 786
+L + LE S Q++ K+ K + ++ + ++ + Q+ EL E+
Sbjct: 820 NLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQ-ERKALEKQLDQLDELLRGLRDEM 878
Query: 787 KKLEDTLVQERQEYEDLTN 805
++L + + +
Sbjct: 879 RQLAELKEPANANQAEGSI 897
Score = 48.1 bits (115), Expect = 3e-05
Identities = 57/270 (21%), Positives = 109/270 (40%), Gaps = 19/270 (7%)
Query: 535 PSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAF 594
P +EK+ + + L +L ER A+ +E+ R + R ++ D
Sbjct: 246 PEIEKLQEDFEQLLSLELRLQHLHGELVADEERLAEEQEE-RQEAKNRLRQQLRTLED-- 302
Query: 595 HPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLE 654
Q+++ R E + E + +L + +S+L LE +K FE +E+
Sbjct: 303 --------QLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQL 354
Query: 655 ASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENL 714
SIR E E + + A + +++ + E L Q KE + LE++ L
Sbjct: 355 PSIRSELE-EVEARLDALTGKHQDVQRKYERLKQKIKE-----QLERDLEKNNERLAAIR 408
Query: 715 KSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQ 774
+ K+ Q DLQ S L + L A + + +E EL+ + + + ++ T +
Sbjct: 409 EEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSAT--ATPE 466
Query: 775 ITELKTQYEQEIKKLEDTLVQERQEYEDLT 804
E ++ ++K ++ Q E L
Sbjct: 467 ELEQLEINDEALEKAQEEQEQAEANVEQLQ 496
Score = 34.7 bits (80), Expect = 0.40
Identities = 77/372 (20%), Positives = 146/372 (39%), Gaps = 54/372 (14%)
Query: 341 EREAEALRTKLAA--AEGLCEELMDENEEMKKE-LRYLEEEMDEMQDHFREDQADEYSSL 397
E + E ++ + A E L + + + + + + ++ ++ + A E L
Sbjct: 194 EGKFETVKRMIVAIAEEHLADGTVPPKSRLNPQDVEHWIADIQALRAI--QKVAPEIEKL 251
Query: 398 KKELEQTAK---NCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQA 454
+++ EQ + L +L E R + + E+ EA+ + R+ +E K E
Sbjct: 252 QEDFEQLLSLELRLQHLHGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLK-EARDE 310
Query: 455 LEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGA-LPKTPSVETA-EKLQKDLKE 512
L +EL AN + +L+ D+ +L A L + PS+ + E+++ L
Sbjct: 311 LNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDA 370
Query: 513 ATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLR 572
T K + V R+ ++ L RDL+ + ER A +R
Sbjct: 371 LTGK--------------------HQDVQRKYERLKQKIKEQ--LERDLEKNNERLAAIR 408
Query: 573 EQ---LRFAEEERYQRLYSVARDAFHPNLV------QYLQIEKVRAESSTEKTQITGEL- 622
E+ + A EE Q L S R + L++ R + + T E
Sbjct: 409 EEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEEL 468
Query: 623 ---ESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASREL 679
E L + E+++ E ++ + S++ QL R+ R+ A + +A R L
Sbjct: 469 EQLEINDEALEKAQEEQEQAEANVEQLQSELRQL----RKRRDEALEALQRA----ERRL 520
Query: 680 NQLREELTQLKK 691
QLR+ L +L+
Sbjct: 521 LQLRQALDELEL 532
Score = 30.0 bits (68), Expect = 9.6
Identities = 42/219 (19%), Positives = 91/219 (41%), Gaps = 14/219 (6%)
Query: 620 GELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASREL 679
G+ E++K + A+ E T + +E I + + +++A + E+
Sbjct: 195 GKFETVKRMIVAIAEEHLADGTVPPKSRLNPQDVEHWIADIQ------ALRAIQKVAPEI 248
Query: 680 NQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSL 739
+L+E+ QL R +L D+ L E + ++ + L+T L+++
Sbjct: 249 EKLQEDFEQLLSLELRLQHLHGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEAR 308
Query: 740 TAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQE 799
++ + +L SE+ +L++Q I +L+ +Q L R E
Sbjct: 309 DELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQ--------LPSIRSE 360
Query: 800 YEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKG 838
E++ R D L G+H D++ + K+ +L++ +
Sbjct: 361 LEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDLEK 399
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 48.9 bits (117), Expect = 2e-05
Identities = 29/171 (16%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 603 QIEKVRAESSTEKTQITGELESL---KSKLSALEAEKKKFETDILEKSSKITQLEASIRE 659
Q+E++ + + + ELES+ + + S + + ++ + + + + + E
Sbjct: 286 QLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEALEEILEKNLQKLEE 345
Query: 660 ERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKE- 718
+ + + S++ S + + + + + + + + EK+ L+++K ++ L
Sbjct: 346 KLKDPS-TSIELESITD-LIESINDIIDAINELIREHNEKIDNLKKEKNKAKKKLWLHLV 403
Query: 719 TQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD 769
++ + I Q + LEK++ + +K+ E E+K E EI L+ Q ++
Sbjct: 404 AELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTN 454
Score = 36.1 bits (84), Expect = 0.15
Identities = 40/206 (19%), Positives = 81/206 (39%), Gaps = 28/206 (13%)
Query: 623 ESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQL 682
E + + LE K+E+ I + +LE+ + E+E S ++ +L
Sbjct: 278 EEYQELIEQLEELIDKYESHI---EKALEELESILDTEKEN---------SEFKLDVEEL 325
Query: 683 REELTQLKKEAQRNAEKVT-KLERDKTSLE-ENLKSKETQMTKTISDLQTKCSTLEKSLT 740
+ L L++ ++N +K+ KL+ TS+E E++ + I +
Sbjct: 326 KALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIR------- 378
Query: 741 AEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEY 800
E +K + E N K + ++ ++ E Y++E K LE + +E
Sbjct: 379 -EHNEKI------DNLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEI 431
Query: 801 EDLTNRYDILEGEHVDIKASLVKEKE 826
+ L LE E +++ L +
Sbjct: 432 KQLEAEIKALEKEIKELEKQLTNIEP 457
Score = 34.2 bits (79), Expect = 0.57
Identities = 21/126 (16%), Positives = 50/126 (39%), Gaps = 12/126 (9%)
Query: 645 EKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEK--VTK 702
E ++I +L+ +++ E+ L E+ + EEL + K + A K K
Sbjct: 92 EIEAQIEELKKELKKLEEKIEQL--------EAEIEKKEEELEKAKNKFLDKAWKKLAKK 143
Query: 703 LERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALK--EKELKTKESEI 760
+ + + + L K+ K + +L++ L+ E+ + +K K + + +
Sbjct: 144 YDSNLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELALL 203
Query: 761 NVLKNQ 766
+
Sbjct: 204 TLSVID 209
Score = 32.7 bits (75), Expect = 1.5
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 607 VRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERE 662
+ AE + E + L+ +++LE E K+ E +I +I +LE +
Sbjct: 402 LVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEP 457
Score = 30.7 bits (70), Expect = 6.7
Identities = 36/218 (16%), Positives = 79/218 (36%), Gaps = 30/218 (13%)
Query: 267 EKLER---EKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLR 323
+LE E+ L+ +L + L +L+ ++ + EN + + + L
Sbjct: 270 AELEAHFDEEYQELIEQLEELIDKYESHIEKALEELESILD-TEKENSEFKLDVEELKAL 328
Query: 324 VRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDE----NEEMKKELRY---LE 376
+ LE + + + + +L + L E + D NE +++ L+
Sbjct: 329 LEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLK 388
Query: 377 EEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKC 436
+E ++ + E ++ + + E+ LE E + E +
Sbjct: 389 KEKNKAKKKLWLHLVAELKEDIDAYQK----------EKKGLEKAINSLEKEIKQLEAEI 438
Query: 437 REVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLK 474
+ + I+ LEK+L TA+++ K LK
Sbjct: 439 KA---------LEKEIKELEKQLTNIEPTADEINKLLK 467
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 48.8 bits (116), Expect = 2e-05
Identities = 107/624 (17%), Positives = 208/624 (33%), Gaps = 24/624 (3%)
Query: 210 VKDAKKTRRKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKL 269
+ AKK L+ E + ++ E + +
Sbjct: 204 KEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEK 263
Query: 270 EREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELET 329
E E + + E K EL L + ELK+E L K +++E E
Sbjct: 264 EEEILA-QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 322
Query: 330 E-AAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFRE 388
E K+ + E E L +L E E +E E+++K LE+ +E+ +
Sbjct: 323 ELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKL 382
Query: 389 DQADEYSSLK---KELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEG 445
+ S+ K +ELE + + L SE+ + L+ EK E K E
Sbjct: 383 ESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEE------- 435
Query: 446 VNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEK 505
E ++ + +L E EK L + +L+++ L +T V+ E+
Sbjct: 436 --LEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSE-------DLLKETKLVKLLEQ 486
Query: 506 LQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDP-TVLMRDLQDS 564
L+ L + K + A+ + V ++ G D +
Sbjct: 487 LELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKVAI 546
Query: 565 MEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELES 624
+ +ER + + ++ L S +I L
Sbjct: 547 SVAVIVEVSAVADEVDERQKLVRALTELPLPARTFVLLDPLLKLPLKSIAVLEIDPALNL 606
Query: 625 LKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLRE 684
+ + LEA++ ++E K T+L E +A + ++ G + L + E
Sbjct: 607 AQLNKATLEADEDDKRAKVVEGILKDTELTK--LLESAKAKESGLRKGVSLEEGLAEKSE 664
Query: 685 ELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQK 744
L + + + E+ ++ L +N + + K + K E
Sbjct: 665 LKASLSELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELL 724
Query: 745 QKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLT 804
++E + K E + + ++ + LK + E+E K +E E E+ T
Sbjct: 725 ADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKT 784
Query: 805 NRYDILEGEHVDIKASLVKEKENN 828
+ + E + +KA + +
Sbjct: 785 EKLKVEEEKEEKLKAQEEELRALE 808
Score = 33.4 bits (76), Expect = 1.2
Identities = 55/365 (15%), Positives = 122/365 (33%), Gaps = 7/365 (1%)
Query: 335 KKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEY 394
++ E E L + E L + + E+ KK L Y + + + D
Sbjct: 174 ERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYL 233
Query: 395 SSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVER--I 452
++ ++ + R ++ S++ E+ E E L K + + + + E +
Sbjct: 234 KLNEERIDLLQELLRDEQEEIESSKQELEK-EEEILAQVLKENKEEEKEKKLQEEELKLL 292
Query: 453 QALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKE 512
E+ELK E+ + D +E + E+ +L + E + ++K
Sbjct: 293 AKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKR 352
Query: 513 ATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLR 572
++ E K + + + K E+ + + + L++ E+EA L
Sbjct: 353 EAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE-LKNEEEKEAKLL 411
Query: 573 EQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSAL 632
+L EE+ + +E + + + EK ++ + L L
Sbjct: 412 LELSEQEEDLLKEEKKEELKI---VEELEESLETKQGKLTEEKEELEKQALKLLKDKLEL 468
Query: 633 EAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKE 692
+ + + L K + +L ++ E + S A ++
Sbjct: 469 KKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISA 528
Query: 693 AQRNA 697
A R
Sbjct: 529 AGRGG 533
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 48.4 bits (115), Expect = 2e-05
Identities = 80/371 (21%), Positives = 148/371 (39%), Gaps = 59/371 (15%)
Query: 33 RDYKEHGNRNRDN-DLRKDDFTVSSPSLSSWTSASTIRDYKE-HGNRNRDNDLRKDDFTV 90
+Y E G + + + + +++ S + E H N++R + T
Sbjct: 253 LEYSEKGKDHHHSHNHQHHSIGINNHHSKHADSKLQTIEVIENHSNKSRPSS----SSTN 308
Query: 91 SSPSLSSWTSASTIRESEKKNEGRSWTSSTNLSSVSSSNDSQNSSRRPPPEDSSNEDDDY 150
S +S +S++ K+ + S+ N S+ S + S + P S NE
Sbjct: 309 GSKETTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQK 368
Query: 151 RSTKYVVRRRTSHLPATSTSSSNAEPSTSSNTTRTRSSASPRLKTPDKPSKADVDFILQV 210
R++K R S A+ S++ + + SA RL+ K +A++
Sbjct: 369 RASKSSSGARDSKKDASGMSANGTVENCIPENKISTPSAIERLEQDIKKLQAEL------ 422
Query: 211 KDAKKTRRKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLE 270
+ R+ N++E +QI LL ++K+ +L+
Sbjct: 423 ----QQARQ------------------------NESELRNQISLLTSLERSLKSDLGQLK 454
Query: 271 REKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENE-------DLNDEKKSLSLR 323
+E +D+L +L SM + K S +Q LK+E + L +EKK R
Sbjct: 455 KE-NDMLQTKLNSMVSAKQKDKQS----MQSMEKRLKSEADSRVNAEKQLAEEKK----R 505
Query: 324 VRELETEAAAFKKSNAAERE--AEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDE 381
+E E AA AA RE AE+L+ E ++L + + ++E R LE+E E
Sbjct: 506 KKEEEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQE 565
Query: 382 MQDHFREDQAD 392
++ ++E + +
Sbjct: 566 LR-KYQESEKE 575
Score = 36.8 bits (85), Expect = 0.078
Identities = 70/413 (16%), Positives = 146/413 (35%), Gaps = 57/413 (13%)
Query: 56 SPSLSSWTSASTIRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRESEKKNEGRS 115
S S + +Y E G + + ++ + S + S ++ E
Sbjct: 240 HSLSKSSNSQTPELEYSEKGKDHHHSH-NHQHHSIGINNHHSKHADSKLQTIEVI----- 293
Query: 116 WTSSTNLSSVSSSNDSQNSSRRPPPEDSSNEDDDYRSTKYVVRRRTSHLPATSTSSSNAE 175
+ + S+ S N S+ SS S ++ + SN+
Sbjct: 294 ---ENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSS------KSAKHSNRNKSNSS 344
Query: 176 PSTSSNTTRTRSSASPRLKTPDKPSKADVDFILQVKDAKKTRRKENLETDTESLAGTETT 235
P + S+ + S+S D SK K+ + + D++ A +
Sbjct: 345 PKSHSSANGSVPSSS----VSDNESKQ-----------KRASKSSSGARDSKKDASGMSA 389
Query: 236 DTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASE 295
+ T + +N+ S + R E D K + E + +++ LR S+ T+ ++ S+
Sbjct: 390 NGTVENCIPENKISTPSAIERLEQDIKKLQAELQQARQNESELRNQISLLTSLERSLKSD 449
Query: 296 LLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAE 355
L +L++ + L+T+ + K+ ++ +E K +E ++
Sbjct: 450 LGQLKKENDMLQTKLNSMVSAKQKDKQSMQSME-------KRLKSEADSRVN-------- 494
Query: 356 GLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKL 415
E+ + E ++ KKE RE+ A+ K++LE + L L
Sbjct: 495 --AEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEM---EIKKLEHDL 549
Query: 416 RKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEK 468
+ E E EK+ +E+ E + E + + + ++ N E
Sbjct: 550 KLKEE-------ECRMLEKEAQELRKYQESEKETEVLMSALQAMQDKNLMLEN 595
Score = 33.7 bits (77), Expect = 0.81
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 23/171 (13%)
Query: 604 IEKVRAESSTEKTQITGELESLKSKLSALEAEKK------KFETDILEKSSKITQLEASI 657
I+K++AE + Q EL + S L++LE K K E D+L+ +K+ + ++
Sbjct: 415 IKKLQAELQQAR-QNESELRNQISLLTSLERSLKSDLGQLKKENDMLQ--TKLNSMVSAK 471
Query: 658 REERERATDLSVKAGSAASRELN---QLREELTQLKKEAQRNAEKVTKLERDKTSLEENL 714
+++++ + + S A +N QL EE + K+E + A + + E+L
Sbjct: 472 QKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESL 531
Query: 715 KSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKEL----KTKESEIN 761
K DL+ + LE L ++++ + EKE K +ESE
Sbjct: 532 KQA-------KQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQESEKE 575
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 47.8 bits (114), Expect = 3e-05
Identities = 44/272 (16%), Positives = 91/272 (33%), Gaps = 39/272 (14%)
Query: 452 IQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLK 511
I ALEK+++ + KL+K LK ++ L +T + +KL+K +
Sbjct: 47 IAALEKKIREQQDQRAKLEKQLKSLETEIASLEA-------QLIET--ADDLKKLRKQIA 97
Query: 512 EATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADL 571
+ +L + + L + + L R G P +L+ + +R L
Sbjct: 98 DLNARLNALEVQEREQRRRLAEQLA-------ALQRSGRNPPPALLV--SPEDAQRSVRL 148
Query: 572 REQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSA 631
R +R+ + ++ + + + +I E L + LS
Sbjct: 149 AIYYGALNPARAERIDA---------------LKATLKQLAAVRAEIAAEQAELTTLLSE 193
Query: 632 LEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSA------ASRELNQLREE 685
A++ K + E+ + QL + + ++++ +L A + RE
Sbjct: 194 QRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREA 253
Query: 686 LTQLKKEAQRNAEKVTKLERDKTSLEENLKSK 717
+ A R K + K
Sbjct: 254 AAAAEAAAARARAAEAKRTGETYKPTAPEKML 285
Score = 37.0 bits (86), Expect = 0.056
Identities = 36/229 (15%), Positives = 68/229 (29%), Gaps = 44/229 (19%)
Query: 290 KTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSN--------AAE 341
K E+ L++++ E + + L + KSL + LE +
Sbjct: 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100
Query: 342 REAEALRTKLAAAEGLCEELMD---------------------ENEEMKKELRYLEEEMD 380
AL + E + + + L
Sbjct: 101 ARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARA 160
Query: 381 EMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEK------LEAEK 434
E D + + ++++ E+ L + R + + QL E+ L +E
Sbjct: 161 ERIDALKATLK-QLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSEL 219
Query: 435 KCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERA 483
+ K+E ++A E LK +AE +EA E A
Sbjct: 220 SADQ--------KKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAA 260
Score = 36.2 bits (84), Expect = 0.12
Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 28/215 (13%)
Query: 609 AESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLS 668
A + QI E+ +L+ K+ + ++ K E + ++I LEA + E +
Sbjct: 34 AADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE--------T 85
Query: 669 VKAGSAASRELNQLREELTQLKKEAQRNAEKVTKL------ERDKTSLEENLKSKETQ-- 720
+++ L L L+ + + ++ + + ++ Q
Sbjct: 86 ADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRS 145
Query: 721 ---------MTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNV 771
+ ++ K L A + + A ++ EL T SE Q+
Sbjct: 146 VRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSE--QRAQQAKLAQ 203
Query: 772 TKQ-ITELKTQYEQEIKKLEDTLVQERQEYEDLTN 805
+ + Q E+ + L + R L N
Sbjct: 204 LLEERKKTLAQLNSELSADQKKLEELRANESRLKN 238
Score = 35.5 bits (82), Expect = 0.18
Identities = 49/250 (19%), Positives = 92/250 (36%), Gaps = 35/250 (14%)
Query: 674 AASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQT--- 730
A ++L Q+++E+ L+K+ + ++ KLE+ SLE + S E Q+ +T DL+
Sbjct: 35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94
Query: 731 KCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQI--TELKTQYEQEIKK 788
+ + L L A + Q+ + + L +E +S N + + Q +
Sbjct: 95 QIADLNARLNALEVQEREQRRRL----AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAI 150
Query: 789 LEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVK--EKENNHGRLQQTQKGMWISKRPW 846
L R E R D L+ + A + ++ L Q+
Sbjct: 151 YYGALNPARAE------RIDALKATLKQLAAVRAEIAAEQAELTTLLSEQR--------- 195
Query: 847 SKKRKITTEPSVAKEEHSKSYQ-----LQTTLQRLTEVAAELKRASQLPPTPPTTEESQN 901
+++ K+ + EE K+ L ++L E+ A R +
Sbjct: 196 AQQAKL----AQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAR 251
Query: 902 RIRRAAFAAK 911
AA AA
Sbjct: 252 EAAAAAEAAA 261
Score = 31.2 bits (71), Expect = 4.2
Identities = 42/282 (14%), Positives = 87/282 (30%), Gaps = 48/282 (17%)
Query: 1017 ALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTIADLKASHNSPTTSRLSGGSTHSEV-- 1074
A +LK IQ ++ +++ + +K + L+ S + ++
Sbjct: 35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94
Query: 1075 -ITTSDRKKKGL-------FGKLKQLTRSSHSVDRDSDTSQFDPGSDTSLDDSRNLKDRI 1126
I + + L +L + + R+ P S +D++ R+
Sbjct: 95 QIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPP-----PALLVSPEDAQR-SVRL 148
Query: 1127 TGIFKKSGSTSRANSVDDLKAVITSLEQQISCMEDELSESRLETSRLKTELVSEKSAAEI 1186
+ + +RA +D LKA + L + + E +E L +E ++++
Sbjct: 149 AIYYGAL-NPARAERIDALKATLKQLAAVRAEIAAEQAELT----TLLSEQRAQQAKLAQ 203
Query: 1187 KLSELTSKVNELEEDRLLSSGRTNKIPGLKTRMELAWHKEREEQQRLLQETSTLARDLRQ 1246
L E + +L E Q+ L+E L+
Sbjct: 204 LLEERKKTLAQLN-------------------------SELSADQKKLEELRANESRLKN 238
Query: 1247 TLFEVERERDKER--LEAKRRFDQMKKTTEEEQEECRRKLTE 1286
+ E K R A + E ++ K T
Sbjct: 239 EIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTA 280
Score = 30.8 bits (70), Expect = 5.2
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 250 DQIDLLRHELDNMKAKCEKLEREKSDIL------------LRRLASMETTTSKTTASELL 297
++ID L+ L + A ++ E++++ L +L T SEL
Sbjct: 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS 220
Query: 298 KLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTK 350
Q+++ EL+ L +E S + AAA + + A R AEA RT
Sbjct: 221 ADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTG 273
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 48.1 bits (115), Expect = 3e-05
Identities = 51/317 (16%), Positives = 108/317 (34%), Gaps = 77/317 (24%)
Query: 446 VNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEK 505
VN+V R +E++L+ +KL LK+ GGKP + E
Sbjct: 27 VNEVRRCDEVERKLRKLESKIKKLGIPLKD--------TGGKPDVPPSKEFLDLEEEILD 78
Query: 506 LQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSM 565
L+ ++KE + LE + +E +L+
Sbjct: 79 LEAEIKEVEENLES--------------------LEKEI--------------NELE--- 101
Query: 566 EREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITG----- 620
E L E+ F +E + NL + + +R + + G
Sbjct: 102 EWLNVLDEEKSFLDENLEELSEL-------SNL--DIDFKYLRGAEGLKLGFVAGVINRE 152
Query: 621 ELESLKSKLS-ALEAEKKKFETDILEKSSKIT---------QLEASIRE--ERERATDLS 668
+LE+ + +L A ++ E + + K T + +++ +
Sbjct: 153 KLEAFERELWRACRGYIRQAEIEEPLEDPKKTVFIIFFVGKEDLDKVKKILDSFGFELYD 212
Query: 669 VKAGSAASRE-LNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMT--KTI 725
V E ++++ + + +L++ E LE+ + + L + + Q++ K +
Sbjct: 213 VPETEGERSELISKVNKRIEELQRV-LEQTES--HLEKVLVKIADELLAWDEQVSKEKAV 269
Query: 726 SDLQTKCSTLEKSLTAE 742
+ + K+L AE
Sbjct: 270 YETLNLFNYDTKTLIAE 286
Score = 44.3 bits (105), Expect = 5e-04
Identities = 63/336 (18%), Positives = 110/336 (32%), Gaps = 57/336 (16%)
Query: 366 EEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQL 425
+E++++LR LE ++ ++ ++ KE + L ++++ E E L
Sbjct: 34 DEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESL 93
Query: 426 EAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQ--KDLKEATDKLERA 483
E E E E + L++E +E E+L +L L A
Sbjct: 94 EKEINE----------------LEEWLNVLDEEKSFLDENLEELSELSNLDIDFKYLRGA 137
Query: 484 NGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRE 543
G KLG + + E E +++L A R + P + V +E
Sbjct: 138 EG---LKLGFVAGVINREKLEAFERELWRACRGYIRQAEIEEPLEDPKKTVFIIFFVGKE 194
Query: 544 TLTR--------GGSQED-PTV--LMRD-LQDSMEREADLREQLRFAEEERYQRLYSVAR 591
L + G D P + + +R +L+ L E + L +A
Sbjct: 195 DLDKVKKILDSFGFELYDVPETEGERSELISKVNKRIEELQRVLEQTESHLEKVLVKIAD 254
Query: 592 DAFHPNLVQYLQIEKVRAE-----SSTEKTQI------TGELESLKSKL---SALEAEKK 637
+ + EK E + KT I +LE LK+ L +
Sbjct: 255 --ELLAWDEQVSKEKAVYETLNLFNYDTKTLIAEGWVPAKDLEKLKAALENATEGSGSVP 312
Query: 638 KFETDILE--------KSSKITQLEASIREERERAT 665
E DI K++K T I +
Sbjct: 313 SIENDIETNEEPPTYLKNNKFTAPFQMIVDAYGIPK 348
Score = 37.4 bits (87), Expect = 0.059
Identities = 49/268 (18%), Positives = 89/268 (33%), Gaps = 36/268 (13%)
Query: 551 QEDPTVLMRDLQDSMEREADLREQLRFAEEER-----YQRLYSVARDAFHPNLVQYLQIE 605
E V +RDL E + Q +F E R ++L + +
Sbjct: 5 GELGLVQIRDLN---EDVSAF--QRKFVNEVRRCDEVERKLRKLESKIKKLGIPLKDTGG 59
Query: 606 KVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERAT 665
K S E + E+ L++++ +E + E +I E + + EE+
Sbjct: 60 KPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINEL----EEWLNVLDEEKS--- 112
Query: 666 DLSVKAGSAASRELNQLREELTQLK-KEAQR--------NAEKVTKLERDKTSLEENLKS 716
+ EL+ L + L+ E + N EK+ ER L +
Sbjct: 113 --FLDENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFER---ELWRACRG 167
Query: 717 KETQMTKTISDLQTKCSTLEKSLTAEQKQKALKE--KELKTKESEINVLKNQSSD---NV 771
Q K + ++ +K+ + ++ + + S+ V
Sbjct: 168 YIRQAEIEEPLEDPKKTVFIIFFVGKEDLDKVKKILDSFGFELYDVPETEGERSELISKV 227
Query: 772 TKQITELKTQYEQEIKKLEDTLVQERQE 799
K+I EL+ EQ LE LV+ E
Sbjct: 228 NKRIEELQRVLEQTESHLEKVLVKIADE 255
Score = 35.0 bits (81), Expect = 0.29
Identities = 44/217 (20%), Positives = 82/217 (37%), Gaps = 33/217 (15%)
Query: 267 EKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRE 326
LE E+ L + +E ++ E+ +L++ +N L E L++ + LS
Sbjct: 70 LDLE-EEILDLEAEIKEVEEN-LESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNL 127
Query: 327 LETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386
FK AE KL G+ E E E+ +
Sbjct: 128 DI----DFKYLRGAE------GLKLGFVAGVINREKLEA---------FERELWRACRGY 168
Query: 387 REDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEK-KCREVCGG-ME 444
+ +++ LE K I+ F ++ + +++ + E E G E
Sbjct: 169 I-----RQAEIEEPLEDPKKTVFIIFFVGKEDLDKVKKI-LDSFGFELYDVPETEGERSE 222
Query: 445 GVNKVE-RIQALEKELKLANETAEKLQKDLKEATDKL 480
++KV RI+ L++ L+ +T L+K L + D+L
Sbjct: 223 LISKVNKRIEELQRVLE---QTESHLEKVLVKIADEL 256
Score = 30.8 bits (70), Expect = 6.5
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 725 ISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTK----------Q 774
I DL S ++ E ++ E++L+ ES+I L D K
Sbjct: 12 IRDLNEDVSAFQRKFVNEVRRCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLD 71
Query: 775 ITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASL 821
+ E E EIK++E+ L +E +L ++L+ E + +L
Sbjct: 72 LEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENL 118
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 47.2 bits (113), Expect = 5e-05
Identities = 55/263 (20%), Positives = 94/263 (35%), Gaps = 42/263 (15%)
Query: 623 ESLKSKLSAL------EAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAAS 676
++++L AL EAE K + D LE++ L I ++E L + + A
Sbjct: 39 ADVQAQLDALNKQKLLEAEDKLVQQD-LEQT---LALLDKIDRQKEETEQLKQQL-AQAP 93
Query: 677 RELNQLREELTQLKKEAQRNAEKVTKLERDKTS---LEENLKSKETQMTKTISDLQTKCS 733
+L Q + EL LK + + T+ S LE L Q+ +DL S
Sbjct: 94 AKLRQAQAELEALKDDND----EETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNS 149
Query: 734 TLEKSLTA-EQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDT 792
L T E+ Q AL + ++ I L + + E L
Sbjct: 150 QLVSLQTQPERAQAALYANSQRLQQ--IRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQ 207
Query: 793 LVQERQE--------------YEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKG 838
+R+ + LT R LE + ++ + K RL ++K
Sbjct: 208 NDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQE-AINSK-----RLTLSEKT 261
Query: 839 MWISKRPWSKKRKITTEPSVAKE 861
+ ++ + +I P VA+E
Sbjct: 262 VQEAQSQ-DEAARIQANPLVAQE 283
Score = 36.0 bits (84), Expect = 0.14
Identities = 51/259 (19%), Positives = 102/259 (39%), Gaps = 54/259 (20%)
Query: 603 QIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSK--ITQLEASIREE 660
+I++ + E+ K Q+ L+ + LEA K + + E S + QLE+
Sbjct: 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLES----- 128
Query: 661 RERATDLSVKAGSAASRELNQLREELTQLKKE-AQRNAEKV---TKLERDKTSLEENLKS 716
L Q ++L + + A+ N++ V T+ ER + +L N +
Sbjct: 129 -----------------RLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQR 171
Query: 717 KETQMTKTISDLQTKCSTLEKS----LTAEQK----QKALKEKELKTKESEINVLKNQSS 768
+ Q+ + + L S L AEQ Q L+ K L+ ++L+ Q
Sbjct: 172 LQ-QIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQ-R 229
Query: 769 DNVTKQITELKTQYEQEIKKLEDT-----LVQERQEYEDLTNRYDILEGEHVDIKASLVK 823
D +T +I L E +++ L++ L + ++ ++ + + + + +
Sbjct: 230 DYLTARIQRL----EHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPL---VAQ 282
Query: 824 EKENNH----GRLQQTQKG 838
E E N L+ T+K
Sbjct: 283 ELEINLQLSQRLLKATEKL 301
Score = 34.5 bits (80), Expect = 0.45
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 60/196 (30%)
Query: 1143 DDLKAVITSLEQQISCMEDELSESRLETSRLKTE---------------LVSEKSAAEIK 1187
D L A I LE Q+ +++ ++ RL S + LV+++ ++
Sbjct: 230 DYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQ 289
Query: 1188 LSEL----TSKVNELEE---------DRLLSSGRTNK--IPGLKTRMELAWHKER---EE 1229
LS+ T K+N L + DRL S R K I LK + L+ R ++
Sbjct: 290 LSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLS----RILYQQ 345
Query: 1230 QQRL--LQETSTLAR---DLRQTLFEVERERDK--------ERLEAKRRFDQMKKTTEEE 1276
QQ L LA DLR FE+ ++RD ++LEA + T+E
Sbjct: 346 QQALPSADLIEGLADRIADLRLEQFEINQQRDALFQPDAYIDKLEA----GHKSEVTDEV 401
Query: 1277 QE------ECRRKLTE 1286
++ + RR+L +
Sbjct: 402 RDALLQLLDERRELLD 417
Score = 33.0 bits (76), Expect = 1.2
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 299 LQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLC 358
+Q +++ L + + L E K + ++LE A K + + E E L+ +LA A
Sbjct: 41 VQAQLDALN-KQKLLEAEDKLV---QQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKL 96
Query: 359 EELMDENEEMKKE-------------LRYLEEEMDEMQDHFREDQAD--EYSSL 397
+ E E +K + LR LE + + D + Q D EY+S
Sbjct: 97 RQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQ 150
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 47.0 bits (112), Expect = 7e-05
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 323 RVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEM 382
+V+E E RE ++ E E L +EN E+K+EL L+ E++++
Sbjct: 396 KVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKL 455
Query: 383 QDHFREDQADEYSSLKKELEQTAKNCRI--LSFKLRKSERRSEQLEAEKLEAEKKCREVC 440
+ + + ++K+ E A++ RI L +L + ++R E+LE + E K +
Sbjct: 456 ESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK--- 512
Query: 441 GGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGG 486
+E K ++ +EK A E AE+ + +E +GG
Sbjct: 513 --LELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVEDPSGG 556
Score = 37.4 bits (87), Expect = 0.050
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 605 EKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERA 664
E E E T ++ L+ + LE E + + ++ E +I +LE+ + R
Sbjct: 407 EGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466
Query: 665 TDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEEN 713
D K RE+ + +L+KE + ++V +LER L +
Sbjct: 467 RDKVRK-----DREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510
Score = 34.7 bits (80), Expect = 0.39
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 262 MKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLS 321
K K E+ REK E + KL++ V L+ EN +L E + L
Sbjct: 395 SKVKEEERPREK-----EGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELK 449
Query: 322 LRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDE 381
+ +LE+E F++ R+ ++ A + E L E EE KK + LE ++ E
Sbjct: 450 REIEKLESELERFRRE---VRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506
Query: 382 MQDHFREDQADEYSSLKK 399
++ + + + + + +K
Sbjct: 507 LRKMRKLELSGKGTPVKV 524
Score = 33.9 bits (78), Expect = 0.59
Identities = 33/193 (17%), Positives = 75/193 (38%), Gaps = 27/193 (13%)
Query: 624 SLKSKLSALEAEKKKFETDILEKSSKI-----TQLEASIREERERATDLSVKAGSAASRE 678
+ K KL +E + + + K L ++ + +E
Sbjct: 356 AYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEER------PREKEGT 409
Query: 679 LNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTL--- 735
+ R E+T +K ++ E V +LE + LK + ++ + I L+++
Sbjct: 410 EEEERREITVYEKRIKKLEETVERLEEEN----SELKRELEELKREIEKLESELERFRRE 465
Query: 736 -------EKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITEL--KTQYEQEI 786
++ + A ++ EKEL+ K+ + L+ + ++ + EL K + +
Sbjct: 466 VRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVV 525
Query: 787 KKLEDTLVQERQE 799
+KL ++E +E
Sbjct: 526 EKLTLEAIEEAEE 538
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 44.7 bits (106), Expect = 1e-04
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 595 HPNLVQYLQIEKVRAE---SSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKIT 651
+ NL L I+K+ E +I L+ K++L AL + E ++ + ++++
Sbjct: 3 NNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS 62
Query: 652 QLEASIREERERATDLSVKAGSAA-SRELNQLREELTQLKKEAQRNAEKVTKLERDKTSL 710
QLE+ I+E RER K + REL L E+ K+ +++ +L + L
Sbjct: 63 QLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKL 122
Query: 711 EENLKSKETQMTKTISDLQTKCSTLEKSLT-AEQKQKALKEKELKTKE 757
E+ ++ + ++ + +L + LE+ + ++ + L K + KE
Sbjct: 123 EKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170
Score = 33.5 bits (77), Expect = 0.54
Identities = 33/181 (18%), Positives = 78/181 (43%), Gaps = 22/181 (12%)
Query: 241 TLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQ 300
+L+ + + D L + ++ +K + E + L L+
Sbjct: 8 SLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALN----------------KALEALE 51
Query: 301 QRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKS---NAAEREAEALRTKLAAAEGL 357
+ +L+ + L E + + R++ E + +A K A E + + ++ + E
Sbjct: 52 IELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDE 111
Query: 358 CEELMDENEEMKKELRYLEEEMDEMQDHFREDQAD---EYSSLKKELEQTAKNCRILSFK 414
ELM+E E+++KE+ L+E ++ ++ + E +A E + +++E ++ + L K
Sbjct: 112 LAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK 171
Query: 415 L 415
L
Sbjct: 172 L 172
Score = 30.8 bits (70), Expect = 4.0
Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 7/143 (4%)
Query: 691 KEAQRNAEKVTKLERDKTSLEENLKSKETQMTKT---ISDLQTKCSTLEKSLTAEQKQKA 747
++ + KL+ +K LE +K + K + L LE L + Q +
Sbjct: 3 NNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS 62
Query: 748 LKEKELKTKESEINV----LKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDL 803
E E++ I L + + + ++ I LED L + +E E L
Sbjct: 63 QLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKL 122
Query: 804 TNRYDILEGEHVDIKASLVKEKE 826
+ L+ ++ +L + +
Sbjct: 123 EKEIEDLKERLERLEKNLAEAEA 145
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 45.6 bits (108), Expect = 2e-04
Identities = 113/497 (22%), Positives = 207/497 (41%), Gaps = 94/497 (18%)
Query: 251 QIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTEN 310
Q+ LL+ E ++++ + EKL+ L +L ++ + + LQ ++ +L+ EN
Sbjct: 201 QVLLLQEEKNSLQQENEKLQER-----LAQLEGSSLGPNQLGSKKYNLLQSQLEQLQEEN 255
Query: 311 EDLNDEKKSLSLRVRELETEAAAFKKSN----AAEREAEALR-------------TKLAA 353
L + ++ ELE E A + N + E++AL+ KL A
Sbjct: 256 FRLEAARDDYRIKCEELEKELAELQHRNDELTSLAAESQALKDEIDVLRESSDKAKKLEA 315
Query: 354 AEGLCEELMDENEEMKKELRYLEE-EMDEMQDHFR-EDQADEYSSLKKELEQTAKNCRIL 411
++ +++ +++++++ LEE MQ+ + E++ + ++ + +LE + + L
Sbjct: 316 QVETYKKKLEDLNDLRRQVKLLEERNAMYMQNTVQLEEELKKANAARGQLETYKRQVQEL 375
Query: 412 SFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQK 471
KL E +A+KLE E K E E+++AL+KE E +
Sbjct: 376 HAKL-----SEESKKADKLEFEYKRLE-----------EKLEALQKE----KERLLAERD 415
Query: 472 DLKEATDKLE--RANGGKPPKLGALPKTPSVET--AEKLQKDLKEATDKLERANGGKPPK 527
L+E ++L +A + + A +PS + AE L + +E +L+ N
Sbjct: 416 SLRETNEELRCGQAQQDQLTQADA-GTSPSGDNLAAELLPSEYREKLIRLQHEN------ 468
Query: 528 LGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLY 587
K+ R G E T L + L+D+ R +L QLR A +R L
Sbjct: 469 -----------KMLRLG-QEGSENERITELQQLLEDANRRNNELETQLRLA-NQRILELQ 515
Query: 588 SVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILE-- 645
D L + LQ + ++E S+ +LE +L E +K I E
Sbjct: 516 QQVED-----LQKALQEQGSKSEDSSLLKS---KLEEHLEQLHEANEELQKKREQIEELE 567
Query: 646 ------KSSKITQLEASI--REERERATDLSVKAGSAASRE--------LNQLREELTQL 689
S KI +LEA++ ++E RA + K +RE N E+ L
Sbjct: 568 PDQDQNLSRKIAELEAALQKKDEDMRAMEERYKKYVEKAREVIKTLDPKQNPASPEIQLL 627
Query: 690 KKEAQRNAEKVTKLERD 706
KK+ +++ LE +
Sbjct: 628 KKQLTERDKRIRHLESE 644
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 44.8 bits (107), Expect = 3e-04
Identities = 56/277 (20%), Positives = 113/277 (40%), Gaps = 40/277 (14%)
Query: 245 DNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVN 304
E DQ+ L+ + + L+ + + + ++ + LL+ + ++
Sbjct: 225 QTELPDQLQELKAGYRELVEEGYHLD---HLDIEKEIQDLKEQIDE--NLALLE-ELDLD 278
Query: 305 ELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDE 364
E + +NE++ + L LE E A K E+ ++ L L E ++
Sbjct: 279 EAEEKNEEIQERIDQL---YDILEREVKARKY---VEKNSDTLPDFL-------EHAKEQ 325
Query: 365 NEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQ 424
N+E+K+E+ +++ E + + L+K+LE K ++ ++ + E +
Sbjct: 326 NKELKEEIDRVKQSY-----TLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSE 380
Query: 425 LEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERAN 484
L+ E E K+ E+ E ++ E +Q L K+ A E E+ + L E LE++N
Sbjct: 381 LQEELEEILKQLEEIEKEQEKLS--EMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSN 438
Query: 485 GGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERAN 521
LP P E + E +D++E
Sbjct: 439 ---------LPGLP-----EDYLEMFFEVSDEIEALA 461
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 42.7 bits (101), Expect = 4e-04
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAA 353
EL +LQ+ + EL+ + +L E + L + LE E +K A ++ A +L
Sbjct: 73 QELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDE 132
Query: 354 AEGLCEELMDENEEMKKELRYLEEEMDEMQDHFR 387
EL +E E+K+E LE E + +Q++ +
Sbjct: 133 EN---RELREELAELKQENEALEAENERLQENEQ 163
Score = 37.3 bits (87), Expect = 0.024
Identities = 16/90 (17%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 673 SAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEE-------------NLKSKET 719
+ EL +L+E+L +L++E Q ++++ LE + L++ L +
Sbjct: 76 AELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENR 135
Query: 720 QMTKTISDLQTKCSTLEKSLTAEQKQKALK 749
++ + +++L+ + LE Q+ + +
Sbjct: 136 ELREELAELKQENEALEAENERLQENEQRR 165
Score = 33.8 bits (78), Expect = 0.31
Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 623 ESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGS--------- 673
S + +L L+ E + + ++ E ++ +L+ +E ++ + L +
Sbjct: 62 PSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIK 121
Query: 674 AASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSK 717
S +L EE +L++E ++ LE + L+EN + +
Sbjct: 122 QLSANAIELDEENRELREELAELKQENEALEAENERLQENEQRR 165
Score = 31.1 bits (71), Expect = 2.9
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 325 RELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQD 384
R L +A ++ ++E L+ +LA + EL EN+E+K+EL LE E++ +Q
Sbjct: 56 RYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQ- 114
Query: 385 HFREDQADEYSSLKK---ELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEK 434
E + +K+ + + R L +L + ++ +E LEAE ++
Sbjct: 115 -------KELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQE 160
Score = 30.0 bits (68), Expect = 6.5
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTS--KTTASELLKLQQRV 303
E +Q+ L+ E +K + LE E L + LA ++ ++ E +L++ +
Sbjct: 83 AELQEQLAELQQENQELKQELSTLEAELER-LQKELARIKQLSANAIELDEENRELREEL 141
Query: 304 NELKTENEDLNDEKKSLS 321
ELK ENE L E + L
Sbjct: 142 AELKQENEALEAENERLQ 159
Score = 29.6 bits (67), Expect = 9.0
Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 734 TLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTL 793
L++ L Q++ A +++L + E LK + S + ++ L+ + IK+L
Sbjct: 70 ELQQELAELQEELAELQEQLAELQQENQELKQELS-TLEAELERLQKEL-ARIKQLSANA 127
Query: 794 VQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNH 829
++ +E +L L+ E+ ++A + +EN
Sbjct: 128 IELDEENRELREELAELKQENEALEAENERLQENEQ 163
Score = 29.2 bits (66), Expect = 9.7
Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 15/98 (15%)
Query: 712 ENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNV 771
L+ + ++ + +++LQ + L++ L+ + + +KEL +
Sbjct: 76 AELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKEL------------ARIKQL 123
Query: 772 TKQITELKTQYEQ---EIKKLEDTLVQERQEYEDLTNR 806
+ EL + + E+ +L+ E E L
Sbjct: 124 SANAIELDEENRELREELAELKQENEALEAENERLQEN 161
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 44.4 bits (106), Expect = 4e-04
Identities = 27/154 (17%), Positives = 65/154 (42%), Gaps = 27/154 (17%)
Query: 673 SAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKC 732
+LN+L L +L++E ++ AE+ L ++ L+E L+ K+ ++ +
Sbjct: 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE-------- 563
Query: 733 STLEKSLTAEQKQKALKEKELKTKESEI--------NVLKNQSSDNVTKQITELKTQYEQ 784
E L E +++A ++ +K + E + K + ++ E + + +
Sbjct: 564 ---EDKLLEEAEKEA--QQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNK 618
Query: 785 EIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIK 818
+K E +++++ E+L G+ V
Sbjct: 619 ANEKKEKKKKKQKEKQEELK------VGDEVKYL 646
Score = 36.7 bits (86), Expect = 0.099
Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 25/143 (17%)
Query: 615 KTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSA 674
K I + E L +++LE +++ E E + + + E ++EE E
Sbjct: 508 KKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAE-KLKEELE------------ 554
Query: 675 ASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCST 734
+ +L+EE +L +EA++ A++ K K + ++ K + LQ
Sbjct: 555 --EKKEKLQEEEDKLLEEAEKEAQQAIK----------EAKKEADEIIKELRQLQKGGYA 602
Query: 735 LEKSLTAEQKQKALKEKELKTKE 757
K+ + +K L + K ++
Sbjct: 603 SVKAHELIEARKRLNKANEKKEK 625
Score = 35.6 bits (83), Expect = 0.19
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 31/146 (21%)
Query: 336 KSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYS 395
ERE E K A E L+ E E++K+E LEE+ +++Q+ +
Sbjct: 524 SLEELERELE---QKAEEA----EALLKEAEKLKEE---LEEKKEKLQEEEDK------- 566
Query: 396 SLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQAL 455
L +E E+ A+ ++ + E E K+ R++ G K +
Sbjct: 567 -LLEEAEKEAQQ-------------AIKEAKKEADEIIKELRQLQKGGYASVKAHELIEA 612
Query: 456 EKELKLANETAEKLQKDLKEATDKLE 481
K L ANE EK +K KE ++L+
Sbjct: 613 RKRLNKANEKKEKKKKKQKEKQEELK 638
Score = 35.2 bits (82), Expect = 0.27
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 20/122 (16%)
Query: 1168 LETSR---LKTELVSEKSAAEIKLSELTSKVNELEEDRLLSSGRTNKIPGLKTRMELAWH 1224
E ++ L ++ E A+ + E K+NEL L L+ +E
Sbjct: 491 FEIAKRLGLPENIIEE---AKKLIGEDKEKLNELIAS--LEE--------LERELE---- 533
Query: 1225 KEREEQQRLLQETSTLARDLRQTLFEVERERDKERLEAKRRFDQMKKTTEEEQEECRRKL 1284
++ EE + LL+E L +L + +++ E DK EA++ Q K ++E +E ++L
Sbjct: 534 QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKEL 593
Query: 1285 TE 1286
+
Sbjct: 594 RQ 595
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 43.9 bits (104), Expect = 5e-04
Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 21/202 (10%)
Query: 568 EADLREQLRFAEEE----RYQRLYSVA-RDAFHPNLVQYLQIEKVRAESSTEKTQITGEL 622
E D ++ A+EE R + ++A RDA L + + A SS +++ G +
Sbjct: 199 EGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGG--EEPVLLAGSSVANSELDGRI 256
Query: 623 ESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQL 682
E+L+ +L AL D++ +I QLE EE + G N +
Sbjct: 257 EALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGS-----AKNGGPERGEIANPV 311
Query: 683 REELTQLKKEA--------QRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCST 734
++L EA R AE ++ER ++ L + E ++T+ D + S
Sbjct: 312 YQQLQIELAEAEAEIASLEARVAELTARIERLESLL-RTIPEVEAELTQLNRDYEVNKSN 370
Query: 735 LEKSLTAEQKQKALKEKELKTK 756
E+ LT + + K+ E++ K
Sbjct: 371 YEQLLTRRESAEVSKQMEVQDK 392
Score = 32.3 bits (74), Expect = 1.9
Identities = 42/201 (20%), Positives = 76/201 (37%), Gaps = 24/201 (11%)
Query: 244 NDNEYSDQIDLLRHELDNMKAKCEKLERE-KSDILLRRLASMETTTSKTTASELLKLQQR 302
+ +Y +I + EL+ A+ E E + D L R+L E ++ +L R
Sbjct: 198 QEGDYYSEISEAQEELE--AARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGR 255
Query: 303 VNELKTENEDLN----------DEKKSLSLRVRELETEAAAFKKSNAAEREA-----EAL 347
+ L+ + + L K ++ E + E + K E + L
Sbjct: 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQL 315
Query: 348 RTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKN 407
+ +LA AE L E+ + LE + + E +A E + L ++ E N
Sbjct: 316 QIELAEAEAEIASLEARVAELTARIERLESLLRTIP----EVEA-ELTQLNRDYEVNKSN 370
Query: 408 CRILSFKLRKSERRSEQLEAE 428
L R+S S+Q+E +
Sbjct: 371 YEQL-LTRRESAEVSKQMEVQ 390
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 42.2 bits (100), Expect = 0.002
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 626 KSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREE 685
+ KL + E K I+E++ K + E +E A + K + REL + R E
Sbjct: 24 EKKLGSAEELAK----RIIEEAKK--EAETLKKEALLEAKEEVHKLRAELERELKERRNE 77
Query: 686 LTQLKKEAQRNAEKVTKLERDKTSL---EENLKSKETQMTKTISDLQTKCSTLEKSLTAE 742
L +L++ R ++ L+R SL EENL+ KE +++ +L K LE+ +
Sbjct: 78 LQRLER---RLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELI--A 132
Query: 743 QKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIK 787
++++ L+ T+E +L + + + +L + E+E K
Sbjct: 133 EQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAK 177
Score = 34.9 bits (81), Expect = 0.27
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 38/151 (25%)
Query: 660 ERERATDLSVKAGSAASRELNQLREE-LTQLKKEA---QRNAEKVTKLERDKTS-LEENL 714
+ A +L+ + A +E L++E L + K+E + E+ K R++ LE L
Sbjct: 26 KLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRL 85
Query: 715 KSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQ 774
+E + + + L K LEK KEKEL KE K
Sbjct: 86 LQREETLDRKMESLDKKEENLEK-----------KEKELSNKE---------------KN 119
Query: 775 ITELKTQYEQEIKKLEDTLVQERQEYEDLTN 805
+ E + + E+ I ++R+E E ++
Sbjct: 120 LDEKEEELEELIA-------EQREELERISG 143
Score = 33.7 bits (78), Expect = 0.76
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 11/172 (6%)
Query: 1112 SDTSLDDSRNLKDRITGIFKKSGSTSRANSVDDLKAVITSLEQQISCMEDELSESRLETS 1171
++ L + L RI KK T + ++ + K + L ++ E EL E R E
Sbjct: 23 AEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAEL---ERELKERRNELQ 79
Query: 1172 RLKTELVSEKSAAEIKLSELTSKVNELEEDRLLSSGRTNKIPGLKTRMELAWHKEREEQQ 1231
RL+ L+ + + K+ L K LE+ S + + + +E ++REE +
Sbjct: 80 RLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELE 139
Query: 1232 RLLQETSTLARDLRQTLFEVERERDKERLEAKRRFDQMKKTTEEEQEECRRK 1283
R+ T A+++ L EVE E E AK +K+ EE +EE +K
Sbjct: 140 RISGLTQEEAKEI--LLEEVEEEARHEA--AKL----IKEIEEEAKEEADKK 183
Score = 33.4 bits (77), Expect = 0.99
Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 27/175 (15%)
Query: 409 RILSFKLRKSERRSEQL--EAEKLEAEKKCREVCGGMEGVNKVERIQA-LEKELKLANET 465
RI KL +E ++++ EA+K EAE +E +E +V +++A LE+ELK
Sbjct: 21 RIAEKKLGSAEELAKRIIEEAKK-EAETLKKEAL--LEAKEEVHKLRAELERELKERRNE 77
Query: 466 AEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKP 525
++L++ L + + L+R K L K + +K+L E ++LE +
Sbjct: 78 LQRLERRLLQREETLDRKMESLDKKEENLEK--KEKELSNKEKNLDEKEEELEELIAEQR 135
Query: 526 PKLGALPKTPSVEKVS-------RETL---TRGGSQEDPTVLMRDLQDSMEREAD 570
+L E++S +E L ++ + L++++++ + EAD
Sbjct: 136 EEL---------ERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEAD 181
Score = 31.8 bits (73), Expect = 2.7
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 621 ELESLKSKLSALEAEKKKF---ETDILEKSSKITQLEASIREERERATDLSVKAGSAASR 677
++ESL K LE ++K+ E ++ EK ++ +L A REE ER + L+ + A
Sbjct: 95 KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQE--EAKEI 152
Query: 678 ELNQLREELT--------QLKKEAQRNAEKVTK 702
L ++ EE ++++EA+ A+K K
Sbjct: 153 LLEEVEEEARHEAAKLIKEIEEEAKEEADKKAK 185
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 41.7 bits (98), Expect = 0.002
Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 30/220 (13%)
Query: 285 ETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREA 344
E +K +EL LQ++++EL++ E++ E K+L+ +++++ E ++ N E
Sbjct: 261 EEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEE 320
Query: 345 EALRTKLAAAEGLCEELMDENEEMKKELRYL----EEEMDEMQDHFREDQA---DEYSSL 397
++ + EL+ + E +L+ L E + E+ + + DEY SL
Sbjct: 321 YKIKKRTV-------ELLPDAENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEYRSL 373
Query: 398 K-KELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNK-------V 449
K K + + R L +++K + E+LE+E E+ +++ E K
Sbjct: 374 KEKNRNKEDETQRQLD-EIKKLRNKIEELESELQTKEQLYKQLLDEYENAPKSVSRSAYT 432
Query: 450 ERIQALEKELKLANETAEK-------LQKDLKEATDKLER 482
RI + K +K E +K LQK++ T KL+R
Sbjct: 433 RRILEIIKNIKKQKEDIDKILSDTRSLQKEINNITGKLDR 472
Score = 34.3 bits (79), Expect = 0.49
Identities = 40/218 (18%), Positives = 88/218 (40%), Gaps = 33/218 (15%)
Query: 603 QIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERE 662
+ K R +S + ++ T + ++ +A E + +T+ + +LEA ++E+ +
Sbjct: 222 LLSKFRLDSWDKGSRFTRTEKVEQAATAAAEVPPAEMDTEEDRTKEREAELEA-LQEQID 280
Query: 663 RATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSK----- 717
+ ++ E+ L + ++ E++T + ++ LEE K K
Sbjct: 281 EL-----------ESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEEYKIKKRTVE 329
Query: 718 -----ETQMTKTISDL-QTKCSTLEKSLTAEQKQKALKEK--ELKTKESEINVLKNQSSD 769
E + K + + + LE + E + L ++ LK K K +
Sbjct: 330 LLPDAENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEYRSLKEKNRN----KEDETQ 385
Query: 770 NVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRY 807
+I +L+ +I++LE L + Q Y+ L + Y
Sbjct: 386 RQLDEIKKLR----NKIEELESELQTKEQLYKQLLDEY 419
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 41.2 bits (97), Expect = 0.002
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 17/155 (10%)
Query: 615 KTQITGELESLKSKLSALEAEKKKFETDILEKSS---KITQLEASIREERERATDLSVKA 671
+ G E L+ L ++ +++ D+ +S K+ + +++EE L+ +
Sbjct: 142 MQLLEGLKEGLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQLADEL 201
Query: 672 GSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTK 731
EL + R+EL L K+ + LEE L+ + ++T I L K
Sbjct: 202 NLCDPLELEKARQELRSLSV----------KISEKRKQLEE-LQQELQELTIAIEALTNK 250
Query: 732 CSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQ 766
S L + + +K +E+ EI+ LK +
Sbjct: 251 KSELLEEIAEAEKI---REECRGWSAKEISKLKAK 282
Score = 38.9 bits (91), Expect = 0.015
Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 15/145 (10%)
Query: 677 RELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEE------NLKSKETQMTKT-ISDLQ 729
L ++ + L K+ KL + +L+E L + + +
Sbjct: 154 ENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQLADELNLCDPLELEKAR 213
Query: 730 TKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKL 789
+ +L ++ ++KQ ++EL+ I L N+ +EL + + K
Sbjct: 214 QELRSLSVKISEKRKQLEELQQELQELTIAIEALTNK--------KSELLEEIAEAEKIR 265
Query: 790 EDTLVQERQEYEDLTNRYDILEGEH 814
E+ +E L + +L+
Sbjct: 266 EECRGWSAKEISKLKAKVSLLQKLT 290
Score = 31.2 bits (71), Expect = 3.7
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 296 LLKLQQRVNELKTENEDLNDE-------KKSLSLRVRELETEAAAFKKSNAAEREAEALR 348
L++ + +K + E LN + K L +++ L+ E A+ + A+
Sbjct: 149 KEGLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLR--QLADELNLCDP 206
Query: 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLK---KELEQTA 405
+L A L + E +K+L L++E+ E+ E ++ S L E E+
Sbjct: 207 LELEKARQELRSLSVKISEKRKQLEELQQELQELTIAI-EALTNKKSELLEEIAEAEKIR 265
Query: 406 KNCRILSFK 414
+ CR S K
Sbjct: 266 EECRGWSAK 274
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 41.3 bits (97), Expect = 0.003
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 5/187 (2%)
Query: 297 LKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEG 356
L K NE + + + +LE + KK + + +LA +
Sbjct: 39 RILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDE 98
Query: 357 LC--EELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFK 414
+ E L N E KEL LE+E+DE+ ++ + ++K+ E KN L F+
Sbjct: 99 IAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKREN-NKNEERLKFE 157
Query: 415 LRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLK 474
K E LE E+ + E++ E +E E+ ++ LK AE + ++
Sbjct: 158 NEKKLE--ESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAELGSQQVQ 215
Query: 475 EATDKLE 481
+L
Sbjct: 216 GEALELP 222
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein. The sequences
featured in this family are similar to a region of human
TPR protein and to yeast myosin-like proteins 1 (MLP1)
and 2 (MLP2). These proteins share a number of features;
for example, they all have coiled-coil regions and all
three are associated with nuclear pores. TPR is thought
to be a component of nuclear pore complex- attached
intra-nuclear filaments, and is implicated in nuclear
protein import. Moreover, its N-terminal region is
involved in the activation of oncogenic kinases,
possibly by mediating the dimerisation of kinase domains
or by targeting these kinases to the nuclear pore
complex. MLP1 and MLP2 are involved in the process of
telomere length regulation, where they are thought to
interact with proteins such as Tel1p and modulate their
activity.
Length = 132
Score = 39.2 bits (92), Expect = 0.003
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 625 LKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVK------AGSAASRE 678
L+ + S+L+AE K+ + KI +L+ + E+ E A + K + E
Sbjct: 1 LEEEKSSLQAELKRLLEKKEDAEEKIQKLQEDLEEQAEIANEAQQKYERELVKHAEDIEE 60
Query: 679 LNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEK 737
L LR++L +LKKE + + + + + EE+ + ++ + +S+L+ + L +
Sbjct: 61 LQALRKQLNELKKEIAQLKAEAESAQAELSEAEESWEEQKKMLEDELSELEKRIEELNE 119
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 40.4 bits (94), Expect = 0.007
Identities = 112/635 (17%), Positives = 251/635 (39%), Gaps = 83/635 (13%)
Query: 198 KPSKADVDFILQVKDAKKTRRKENLETDTESLAGT-ETTDTTETTLVNDNEYSDQIDLLR 256
+ KAD+D L+ D + + + T T+ T + D E + +SD++ L
Sbjct: 507 QNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLL 566
Query: 257 HELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDE 316
N K + L + +I T L KL + + L+ +N+E
Sbjct: 567 GYFPNKKQLEDWLHSKSKEI-------------NQTRDRLAKLNKELASLEQNKNHINNE 613
Query: 317 KKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLE 376
+S ++ E + S E + E L+ ++ + L + ++
Sbjct: 614 LESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQ---FIT 670
Query: 377 EEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKC 436
+ DE Q Q + + EL++ + L KLR + + + E+E + EK+
Sbjct: 671 QLTDENQSCCPVCQRVFQT--EAELQEFISD---LQSKLRLAPDKLKSTESELKKKEKRR 725
Query: 437 REVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPK 496
E+ G G + I EKE+ +K+ +D++ + +E +
Sbjct: 726 DEMLGLAPG--RQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEES 783
Query: 497 TPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTV 556
T + + + +ER + KL +V++V++E
Sbjct: 784 AKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQE------------- 830
Query: 557 LMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKT 616
++ Q ++ E R +++ ++ +Q+L+ +
Sbjct: 831 -KQEKQHELDTVVSKIELNRKLIQDQQEQ-------------IQHLKSK----------- 865
Query: 617 QITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAAS 676
T EL+S K ++ +++FE ++E S+++ L I++ +E+ + L
Sbjct: 866 --TNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL-----ETFL 918
Query: 677 RELNQLREELTQLKKEAQRNAE-KVTKLERDKTSLEENLKSKETQMT----KTISDLQTK 731
+ Q +EEL K+ + + A+ KV ++ ++ +K E ++ + +T+
Sbjct: 919 EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETE 978
Query: 732 CSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSS---DNVTK-----QITELKTQYE 783
+T+ L +K + ++++ +I+ K Q DN+T ++ E++ + +
Sbjct: 979 LNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELK 1038
Query: 784 QEIKKL-EDTLVQERQEYEDLTNRYDILEGEHVDI 817
Q +K++ + ++Q +QE++ L D+++ HV
Sbjct: 1039 QHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLA 1073
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 40.4 bits (94), Expect = 0.007
Identities = 99/483 (20%), Positives = 179/483 (37%), Gaps = 28/483 (5%)
Query: 239 ETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLK 298
ET D++ +D L+ +L + + L+ E D L L T +K TAS L
Sbjct: 311 ETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTE-VDALRYELERKHNTLTKKTAS-LQA 368
Query: 299 LQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKS---NAAEREAEALRTKLAAAE 355
Q+ E ED+ D + ++R L+ + +++ + E R + +
Sbjct: 369 AQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQETFRRKERRLKEEKERLRSLQTD 428
Query: 356 GLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKL 415
+ +++ E+ E + E + E +D + +E+ + KKE E + + L KL
Sbjct: 429 TNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQEEFETYKKEFEDLKEEVQNLQLKL 488
Query: 416 RKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKE 475
+ R QLE K E K + + ++ EL+ E EKL+K+LK
Sbjct: 489 SE---RELQLELLKEEVSKLASN------QLKQRSDLERAHIELEKIREKHEKLEKELKR 539
Query: 476 ATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTP 535
E A+ G G A L + +K E+ + G L
Sbjct: 540 LRANPESADRGSAVDAGTSRSRADSAGARNEVDRLLDRLEKAEQERDDTEMEAGRL---- 595
Query: 536 SVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFH 595
K + Q++ T R + E L E R + E +
Sbjct: 596 --AKELEKAQRHLTKQQEKTEATRIEFERKSAEL-LEEAERLEKSE-------AEEETLR 645
Query: 596 PNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEA 655
+ ++ +L+ L+++ L A+ +K + ++E ++ EA
Sbjct: 646 QSTQIGHAQAAAHNHIEHHVQKLESDLKQLRAEREQLVAQLEKSQQSLMEFQQELNAAEA 705
Query: 656 SIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLK 715
R+ E +L +A AA E + L + ++ E+V L R+K L E LK
Sbjct: 706 ERRKHLEENRELKQEALLAAISEKDANIALLELSASKKKKTQEEVALLRREKDKLVEQLK 765
Query: 716 SKE 718
+
Sbjct: 766 DQT 768
Score = 32.3 bits (73), Expect = 2.0
Identities = 117/526 (22%), Positives = 212/526 (40%), Gaps = 32/526 (6%)
Query: 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNE 305
N +++ R L MKAKC++ +E S L T +T A++ ++Q +++
Sbjct: 269 NRLDKEVEAERSALAAMKAKCDRAAQELSRKKTELLGLQ--TELETLANQDSDMRQHLDK 326
Query: 306 LKTENEDLNDEKKSLSLRVRELETE-AAAFKKSNAAEREAEALRTKLAAAEGLCEELMDE 364
LK + EK L V L E +A + + A G E++ D
Sbjct: 327 LKEDLTRAEQEKAILQTEVDALRYELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDR 386
Query: 365 NEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELE--QTAKNCRILSFKLRKSERRS 422
E+ +++LR L+++++ +Q+ FR + K+ L QT N KL K+
Sbjct: 387 YEKTERKLRVLQKKIENLQETFR-RKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEK 445
Query: 423 EQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLER 482
E++ E+L+ ++ E + E + +KE + E + LQ L E +LE
Sbjct: 446 ERI-IERLKEQRDRDER-------YEQEEFETYKKEFEDLKEEVQNLQLKLSERELQLEL 497
Query: 483 ANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSR 542
+ K + DL+ A +LE+ K L K + +
Sbjct: 498 LKE---------EVSKLASNQLKQRSDLERAHIELEKIR----EKHEKLEKELKRLRANP 544
Query: 543 ETLTRGGSQEDPTVLMRDLQDSMEREAD-LREQLRFAEEERYQRLYSVARDAFHPNLVQY 601
E+ RG + + T R E D L ++L AE+ER R A ++
Sbjct: 545 ESADRGSAVDAGTSRSRADSAGARNEVDRLLDRLEKAEQERDDTEMEAGRLA---KELEK 601
Query: 602 LQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREER 661
Q + + TE T+I E +S + A EK + E + L +S++I +A+
Sbjct: 602 AQRHLTKQQEKTEATRIEFERKSAELLEEAERLEKSEAEEETLRQSTQIGHAQAAAHNHI 661
Query: 662 ERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERD-KTSLEENLKSKETQ 720
E E QL +L + ++ +++ E + + LEEN + K+
Sbjct: 662 EHHVQKLESDLKQLRAEREQLVAQLEKSQQSLMEFQQELNAAEAERRKHLEENRELKQEA 721
Query: 721 MTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQ 766
+ IS+ + LE S + ++K + + K+ + LK+Q
Sbjct: 722 LLAAISEKDANIALLELSASKKKKTQEEVALLRREKDKLVEQLKDQ 767
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 40.1 bits (95), Expect = 0.007
Identities = 31/135 (22%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 673 SAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKC 732
A ++ + EE ++ +EA++ AE + K E + EE K + + K + + + +
Sbjct: 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKK-EALLEAKEEIHKLRN-EFEKELRERRNEL 84
Query: 733 STLEKSLTAEQKQKALKEK--ELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLE 790
LEK L QK++ L K L+ +E E+ + K++ + + + E++ ++LE
Sbjct: 85 QKLEKRL--LQKEENLDRKLELLEKREEEL--------EKKEKELEQKQQELEKKEEELE 134
Query: 791 DTLVQERQEYEDLTN 805
+ + ++ QE E ++
Sbjct: 135 ELIEEQLQELERISG 149
Score = 39.8 bits (94), Expect = 0.009
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Query: 625 LKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLRE 684
K A E ++ ILE++ K + EA +E A + K + +EL + R
Sbjct: 25 RKKIAEAKIKEAEEEAKRILEEAKK--EAEAIKKEALLEAKEEIHKLRNEFEKELRERRN 82
Query: 685 ELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQK 744
EL +L+K + E + + EE L+ KE ++ + +L+ K LE+ L EQ
Sbjct: 83 ELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE-LIEEQL 141
Query: 745 QKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIK 787
Q+ + L T E +L + + + L + E+E K
Sbjct: 142 QELERISGL-TAEEAKEILLEKVEEEARHEAAVLIKEIEEEAK 183
Score = 34.4 bits (80), Expect = 0.41
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 45/169 (26%)
Query: 317 KKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLE 376
KK +++E E EA + A++EAEA++ K A E EE+ K E
Sbjct: 26 KKIAEAKIKEAEEEAKRILE--EAKKEAEAIK-KEALLEA--------KEEIHKLRNEFE 74
Query: 377 EEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKC 436
+E+ E ++ ++ L+K L Q +N L KL E+R E+LE ++
Sbjct: 75 KELRERRNELQK--------LEKRLLQKEEN---LDRKLELLEKREEELEKKE------- 116
Query: 437 REVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANG 485
+ LE++ + + E+L++ ++E +LER +G
Sbjct: 117 ----------------KELEQKQQELEKKEEELEELIEEQLQELERISG 149
Score = 30.9 bits (71), Expect = 5.0
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 298 KLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAF-KKSNAAEREAEALRTKLAAAEG 356
+L Q+ L + E L ++ L + +ELE + KK E E +L G
Sbjct: 90 RLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG 149
Query: 357 LCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAK 406
L EE K+ L ++++++ R + A L KE+E+ AK
Sbjct: 150 LTA------EEAKEIL------LEKVEEEARHEAA----VLIKEIEEEAK 183
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope
biogenesis, outer membrane].
Length = 458
Score = 40.1 bits (94), Expect = 0.008
Identities = 45/315 (14%), Positives = 114/315 (36%), Gaps = 47/315 (14%)
Query: 518 ERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRF 577
++ P+ P S ++ ++ + + + + + DL +S++ R ++
Sbjct: 100 DKLKLDDDPEFVGKPLIASFLRLLKDLIGPDPTIFEISYRLDDLLESLKVLRAGRSRV-- 157
Query: 578 AEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQ---ITGELESLKSKLSALEA 634
E Y L Q +++ A+ + + LE L+++L EA
Sbjct: 158 -IELSYTSNDPKLAAKLANALAQAYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEA 216
Query: 635 EKKKFETD-------------ILEKSSKITQL-------------EASIREERERATDLS 668
+ + F + S+ TQL AS+ + + +
Sbjct: 217 QVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAA 276
Query: 669 VKAGSAASRELNQLREELTQLKKE----AQRNAEKVTKLERDKTSLEENLKSKETQMTKT 724
S + LR++ Q++++ + K +L + L E + ++ +
Sbjct: 277 ALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQI 336
Query: 725 ISDLQTKCSTLEKSLTAEQKQKALKEKELKT---KESEINVLKNQSSDNVTKQITELKTQ 781
++ L + + LE+ A +K+ A + L + ++ L ++ ++
Sbjct: 337 LASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLREL--------EREAEAARSL 388
Query: 782 YEQEIKKLEDTLVQE 796
YE +++ ++ +QE
Sbjct: 389 YETLLQRYQELSIQE 403
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 39.6 bits (93), Expect = 0.008
Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 8/151 (5%)
Query: 615 KTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSA 674
K + LE LK L K + K+ + ++ EE + L +
Sbjct: 146 KEGLDENLEGLKEDYKLL----MKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC 201
Query: 675 ASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCST 734
EL++ +E+L +L +E +K+ +LE + LE ++ T S+L T+ +
Sbjct: 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDL----TNKKSELNTEIAE 257
Query: 735 LEKSLTAEQKQKALKEKELKTKESEINVLKN 765
EK L + + ++LK + + L
Sbjct: 258 AEKKLEQCRGFTFKEIEKLKEQLKLLQSLTG 288
Score = 37.7 bits (88), Expect = 0.031
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 677 RELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLE 736
L L+E+ L KE + KL ++ L+ + Q+ + +L+ T
Sbjct: 151 ENLEGLKEDYKLLMKELELLNSIKPKL----RDRKDALEEELRQLKQLEDELEDCDPTEL 206
Query: 737 KSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQE 796
+ K K L+E +K K+ E + Q ++ + +T K++ EI + E L Q
Sbjct: 207 DRAKEKLK-KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC 265
Query: 797 RQ----EYEDLTNRYDILEGEH 814
R E E L + +L+
Sbjct: 266 RGFTFKEIEKLKEQLKLLQSLT 287
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 39.5 bits (92), Expect = 0.010
Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 303 VNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELM 362
+ L +E D E+ + + +LE++ A + E + L+ + EEL
Sbjct: 31 LERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELE 90
Query: 363 DENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRS 422
E++++ EL L+EE +++++ EY+ + Q N + L + S +
Sbjct: 91 KEDDDLDGELVELQEEKEQLENE-ELQYLREYNLFDRNNLQLEDNLQSLELQYEYSLNQL 149
Query: 423 EQLE 426
++L
Sbjct: 150 DKLR 153
Score = 32.2 bits (73), Expect = 1.8
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 22/135 (16%)
Query: 357 LCEELMDE-NEEMKKELRYLEEEMD-------------------EMQDHFREDQADEYSS 396
LCEE D E + ELR E+E D E D ++ E
Sbjct: 22 LCEECADILLERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEER 81
Query: 397 LKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALE 456
L ELE+ K L +L + + EQLE E+L+ ++ + + +Q+LE
Sbjct: 82 LLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLF--DRNNLQLEDNLQSLE 139
Query: 457 KELKLANETAEKLQK 471
+ + + +KL+K
Sbjct: 140 LQYEYSLNQLDKLRK 154
Score = 30.6 bits (69), Expect = 5.1
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 20/144 (13%)
Query: 622 LESLKSKLSALEAEKKKFET--DILEKSSK-ITQLEASIREERERATDLSVKAGSAASRE 678
LE L S+L E E+ ++ LE + I+ EA E E +E
Sbjct: 31 LERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELK------------KE 78
Query: 679 LNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKS 738
+L +EL +L+KE ++ +L+ +K LE +E Q + + LE +
Sbjct: 79 EERLLDELEELEKEDDDLDGELVELQEEKEQLEN----EELQYLREYNLFDRNNLQLEDN 134
Query: 739 LTAEQKQKALKEKELKTKESEINV 762
L + + Q +L K + N+
Sbjct: 135 LQSLELQYEYSLNQLD-KLRKTNI 157
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 39.6 bits (92), Expect = 0.012
Identities = 85/577 (14%), Positives = 192/577 (33%), Gaps = 42/577 (7%)
Query: 417 KSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEA 476
++++S +AE L + +C ER Q LEKELK E ++ Q+
Sbjct: 186 FAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYL 245
Query: 477 TDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPS 536
T K E + +E + L+E +++ RA P +
Sbjct: 246 TQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRAR-KAAPLAAHIKAVTQ 304
Query: 537 VEKVSRETLTRGGSQEDP-TVLMRDLQDSMEREADLREQLR-----FAEEERYQRLYSVA 590
+E+ ++ T S+ L+ +++++ + EQ R ++E + + VA
Sbjct: 305 IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVA 364
Query: 591 RDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSS-- 648
+ Q + + +KT +T +L+SL +L L+ E+ +T
Sbjct: 365 T-SIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQ 423
Query: 649 -KITQLEASIREERERATDLSV---------KAGSAASRELNQLREELTQLKKEAQRNAE 698
++ + ++ A + K +E Q +E Q + ++
Sbjct: 424 GQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHL 483
Query: 699 KVTKLERDKTSLEENLKSKETQMTKTISDL-------------QTKCSTLEKSLTAEQKQ 745
+ T+ + + L+ + + + + E++ +
Sbjct: 484 QETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETS 543
Query: 746 KALKEKELKTKESEINVLKNQ--SSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDL 803
+ +L ++ + LK Q +T+ + +++I L++ V+ + E L
Sbjct: 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKL 603
Query: 804 TNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAKEEH 863
+ D+L E + L E++ RL Q ++ + + T EH
Sbjct: 604 SEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREH 663
Query: 864 ---SKSYQLQTTLQRLTEVAAELKRASQLPPTPPTTEESQNRIRRAAFAAKKSVSTESDH 920
+ + R + QL + Q +R + +
Sbjct: 664 ALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLR----ELETHIEEYDRE 719
Query: 921 TGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKM 957
E + + L + +L Q+ + + +
Sbjct: 720 FNEIENASSSLGSDLAAREDALNQSLKELMHQARTVL 756
Score = 35.7 bits (82), Expect = 0.21
Identities = 90/566 (15%), Positives = 169/566 (29%), Gaps = 71/566 (12%)
Query: 251 QIDLLRHELDNMKAKCEKLEREKSDIL-LRRLASMETT---TSKTTASELLKLQQRVNEL 306
Q +R + + E ++ + + L +TT ++ EL LQ+ +
Sbjct: 353 QEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATI 412
Query: 307 KTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENE 366
T D + L A A K+ +R AE AA + E
Sbjct: 413 DTRTSAFRDLQGQL----------AHAKKQQELQQRYAELCA---AAITCTAQCEKLEKI 459
Query: 367 EMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLE 426
+++ + L+E ++Q +E + + K + + L S
Sbjct: 460 HLQESAQSLKEREQQLQT--KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPAR 517
Query: 427 AEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGG 486
+ R + G + + LE + +K ++++
Sbjct: 518 QDIDNPGPLTRRMQRGEQTYAQ------LETSEEDVYHQLTSERKQRASLKEQMQEIQ-- 569
Query: 487 KPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLT 546
+ + S E LQ D E+ + + L
Sbjct: 570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACE----------QHALLR 619
Query: 547 RGGSQEDPTVLMRDLQDSMEREADLREQL-RFAEEERYQRLYSVARDAFHPNLVQYLQIE 605
+ ++D + LQ + A L +R+ A +
Sbjct: 620 KLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQ 679
Query: 606 KVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERAT 665
+ +EK Q+T E L + L ET I E + ++E
Sbjct: 680 LALQKMQSEKEQLTYWKEMLAQCQTLLREL----ETHIEEYDREFNEIE----------- 724
Query: 666 DLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTI 725
A S+ +L + L Q KE A +T L+ ++ +
Sbjct: 725 ----NASSSLGSDLAAREDALNQSLKELMHQA---------RTVLKARTEAHFNNNEEVT 771
Query: 726 SDLQT--KCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYE 783
+ LQT + S L + + + LKT E+EI D + Q L + E
Sbjct: 772 AALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEE 831
Query: 784 QEIKKLED---TLVQERQEYEDLTNR 806
Q + +LE+ TL + +
Sbjct: 832 QFLSRLEEKSATLGEITHQLLKYEEC 857
Score = 33.0 bits (75), Expect = 1.2
Identities = 73/548 (13%), Positives = 160/548 (29%), Gaps = 37/548 (6%)
Query: 258 ELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEK 317
+L M+ +K K+++L R + T + + Q ELK E L +
Sbjct: 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQ 239
Query: 318 KSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEE 377
+S + ++ E + KK ++ A +L A E + EE + +K
Sbjct: 240 QSHAYLTQKREAQEEQLKKQQLL-KQLRARIEELRAQEAVLEETQERINRARKAAPLAAH 298
Query: 378 EMDEMQDHF---------------REDQADEYSSLKKELEQTAKNCRILSFKLRKSERRS 422
Q R + ++ K+ + R+L +
Sbjct: 299 IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIR 358
Query: 423 EQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLER 482
+ E E C++ ++ L ++L+ + + LQ++ +
Sbjct: 359 DAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA 418
Query: 483 ANGGKPPKLGALPK-TPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVS 541
+ A + AE + + +L + +
Sbjct: 419 FRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTK 478
Query: 542 RETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQY 601
+ + V++ L + E L R P +
Sbjct: 479 EQIHLQ--ETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNP------GPLTRRM 530
Query: 602 LQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREER 661
+ E+ A+ T + + +L S + + ++L+ + ++ + + + + I
Sbjct: 531 QRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDI-PNL 589
Query: 662 ERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM 721
+ T S + L E L ++ Q + L S+E +
Sbjct: 590 QNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDV------RLHLQQCSQELAL 643
Query: 722 TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQ 781
T + ++ AL + L + L Q + +Q+T K
Sbjct: 644 KLT-----ALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEM 698
Query: 782 YEQEIKKL 789
Q L
Sbjct: 699 LAQCQTLL 706
Score = 33.0 bits (75), Expect = 1.4
Identities = 79/516 (15%), Positives = 175/516 (33%), Gaps = 46/516 (8%)
Query: 323 RVRELETEAAAFKKSNAAEREAEALRTKLAA--AEGLCEELMDENEEMKKELRYLEEEMD 380
+ +L A KKS + E LR++L + + + + ++KEL++L E +
Sbjct: 177 QYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQ 236
Query: 381 EMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVC 440
+ Q Q+ Y + K+E ++ + L +LR EA E +++
Sbjct: 237 QTQ------QSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRAR 290
Query: 441 GGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSV 500
K + A K + + A+++ +L+ + + + + S+
Sbjct: 291 -------KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKL---LMKRAAHVKQQSSI 340
Query: 501 ETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRD 560
E +L + L + A+ + ++ + + + +
Sbjct: 341 EEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCK 400
Query: 561 LQDSMEREA-----------DLREQLRFAE-EERYQRLYSVARDAFHPNLVQYLQIEKVR 608
D ++RE DL+ QL A+ ++ Q+ Y+ A Q ++EK+
Sbjct: 401 ELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIH 460
Query: 609 AESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKIT-QLEASIREERERATDL 667
+ S + + + K ++ E KK L + + L S D+
Sbjct: 461 LQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI 520
Query: 668 SVKAGSAA------------SRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLK 715
+ +LT +K+ E++ ++++ + L +
Sbjct: 521 DNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDN 580
Query: 716 SKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQI 775
+ + + EK AE + L+ + E ++ + +Q
Sbjct: 581 RSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHL---QQC 637
Query: 776 TELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILE 811
++ + L+ TL QER L+ R E
Sbjct: 638 SQELALKLTALHALQLTLTQERVREHALSIRVLPKE 673
Score = 30.3 bits (68), Expect = 9.9
Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 1/168 (0%)
Query: 272 EKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRE-LETE 330
+ LLR L + + ++L + LN K L + R L+
Sbjct: 700 AQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR 759
Query: 331 AAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQ 390
A +N A +L+ + EE L+ LE E+ + +
Sbjct: 760 TEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDIL 819
Query: 391 ADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCRE 438
+ +L +E EQ S L + + + E + + +E
Sbjct: 820 NLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQE 867
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 39.3 bits (92), Expect = 0.018
Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 8/152 (5%)
Query: 651 TQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSL 710
+ + +EE E A + + +EL QL + + E++ L D L
Sbjct: 36 EAVNSKRQEEAEPAAEEAELQAELIQQELAIND----QLSQALNQQTERLNALASDDRQL 91
Query: 711 EENLKSKETQMTKTISDLQTKC-STLEKSLTAEQKQKALKEKELKTKESEINVLKN--QS 767
NL + Q ++TI + +L S Q+ L E ++ E+ ++ Q+
Sbjct: 92 -ANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERDALQA 150
Query: 768 SDNVTKQITELKTQYEQEIKKLEDTLVQERQE 799
+ Q E++ + D ++ R+E
Sbjct: 151 EKAYINALEGQAEQLTAEVRDILDQILDTRRE 182
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 38.6 bits (90), Expect = 0.023
Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 18/161 (11%)
Query: 250 DQIDLLRHELDNMKAKCEKLEREKSD--ILLRRLASMETTTSKTTASELLKLQQRVNELK 307
+Q+D R EL+ ++A L R + T ++ ++ +L + + +
Sbjct: 230 EQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRAR 289
Query: 308 TENEDLNDEKKSLSLRVRELETEAAAF----------------KKSNAAEREAEALRTKL 351
E E +E++ L R LE EA A ++ A +AEAL+
Sbjct: 290 DELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAA 349
Query: 352 AAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQAD 392
A A E EE ++ L +D+ + R +
Sbjct: 350 ADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQ 390
Score = 36.3 bits (84), Expect = 0.12
Identities = 42/209 (20%), Positives = 81/209 (38%), Gaps = 14/209 (6%)
Query: 278 LRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKS 337
LRR+A ++ + EL +L + + L L DE R L AA +++
Sbjct: 741 LRRIAELDARLA-AVDDELAELARELRALGARQRALADELAGAP-SDRSLR---AAHRRA 795
Query: 338 NAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADE---- 393
AER+AE+ +LA A ++ ++EL ++D D +
Sbjct: 796 AEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKR 855
Query: 394 YSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQ 453
+ LE + R + + + R+ + E++ EA + E E + R++
Sbjct: 856 FGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEAS--LRLR 913
Query: 454 ALEKELKLANETAEKLQKDLKEATDKLER 482
LE+ + ++++ L E L
Sbjct: 914 TLEESV---GAMVDEIRARLAETRAALAS 939
Score = 35.6 bits (82), Expect = 0.21
Identities = 32/197 (16%), Positives = 67/197 (34%), Gaps = 12/197 (6%)
Query: 557 LMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKT 616
+ D+ D++E+ + R++L ER + L R+ F +Y + +T
Sbjct: 221 ELTDVADALEQLDEYRDEL-----ERLEALERALRN-FLQRYRRYA--RTMLRRRATRLR 272
Query: 617 QITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAAS 676
+ + L L E + + E ++ LE R R L +
Sbjct: 273 SAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDA 332
Query: 677 RELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLE 736
EL + R + L+ A + + R+ S E + + + + D + +
Sbjct: 333 EELERARADAEALQAAAADARQAI----REAESRLEEERRRLDEEAGRLDDAERELRAAR 388
Query: 737 KSLTAEQKQKALKEKEL 753
+ L ++ L
Sbjct: 389 EQLARAAERAGLSPAHT 405
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 38.6 bits (90), Expect = 0.025
Identities = 82/441 (18%), Positives = 147/441 (33%), Gaps = 37/441 (8%)
Query: 302 RVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEEL 361
+N E ++L E + + L+ R + A + AE E LR +L E + L
Sbjct: 151 EINVALKELKELEAEIREVQLKTRTWKDLVKALDE---AEEELANLRKELRQLEKEKQRL 207
Query: 362 --MDENEEMKKELRYLEEEMDEMQD--HFREDQADEYSSLKKELEQTAKNCRILSFKL-- 415
+ + E + LE+++ + + D + Y + EL +N +L+ +L
Sbjct: 208 ERLRRLLPLLAERKALEQQLAALGEVIDLPPDAVERYEEARAELRAARRNLELLTERLEA 267
Query: 416 RKSERRSEQLEAEKLEAEKKCREVCGGM-EGVNKVERIQALEKELKLANETAEKLQKDLK 474
++E L+ E L + E N + + E E+ A E A L +
Sbjct: 268 LQAELDEISLDEELLAQAAAIEALHQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIG 327
Query: 475 EATDKLERANGGKPPKLGALPKTPSVETAEKLQ----------KDLKEATDKLERANGGK 524
D + P + ET +L+ K ++A ++ ER
Sbjct: 328 PDAD--------EEAVESLRPSLAAKETVTELEKRKEALDQALKSARDALEERERELKQV 379
Query: 525 PPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQ 584
+L ALP E + + + L Q+ + +L + L R
Sbjct: 380 RAQLAALPTVTVPEPLRAALADALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGD 439
Query: 585 RLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDIL 644
VA P+ Q K E K Q L L+ L LE + + +
Sbjct: 440 LEELVALPV--PSAEQVQAFLKEAEEIMQAKRQKRDRLLELEEDLETLELQLRHLDAAGA 497
Query: 645 EKSSKITQLEASIREE-----RERATDLSVKAGS--AASRELNQLREELTQLKKEAQRNA 697
+ + + R+ R L A + A +QL + L + +
Sbjct: 498 VPTEEEVAAARARRDALWQDIRRGYALLEPTASAYEEAVESADQLADRLLREAQLVGELQ 557
Query: 698 EKVTKLERDKTSLEENLKSKE 718
+ E + LE+ K E
Sbjct: 558 SLRQQEEAARRRLEQLEKELE 578
Score = 37.4 bits (87), Expect = 0.053
Identities = 88/508 (17%), Positives = 159/508 (31%), Gaps = 69/508 (13%)
Query: 207 ILQVKDAKKTRRKENLETDTESLAGTETTDTTETTLVNDNEYSDQI-------DLLRHEL 259
I+Q K K+ R E LE D E+L + + E + +R
Sbjct: 464 IMQAKRQKRDRLLE-LEEDLETLELQLRHLDAAGAVPTEEEVAAARARRDALWQDIRRGY 522
Query: 260 DNMKAKCEKLER--EKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEK 317
++ E E +D L RL EL L+Q+ + E L E
Sbjct: 523 ALLEPTASAYEEAVESADQLADRL-----LREAQLVGELQSLRQQEEAARRRLEQLEKEL 577
Query: 318 KSLSLRVRELET------EAAAFKKSNAAEREAEALRTKL-------AAAEGLCEELMDE 364
+ L L + L AA + A + A R A + L+D
Sbjct: 578 EVLELALAALREAWQAQWAAAGLPLTPAEMEDWLAERATAREQVRAYFKARAELDALLDR 637
Query: 365 NEEMKKELRYLEEEMDEMQDHFREDQADEYS-SLKKELEQTAKNCRILSFKLRKSERRSE 423
++ LR + + + + E + L +E E+ A L +LR +ER E
Sbjct: 638 RARLRAALRAALKAVAIVLPGEELAELLELARQLLEEAEKQAARKASLDERLRDAERALE 697
Query: 424 QLEAEKLEAEKKCREV-------------------CGGMEGVNKVERIQALEKELKLANE 464
+ E EA+ G ++ + ++ I+ + +
Sbjct: 698 EAEERHDEAQSALEAWQEQWYDALLEAGLGGRASPAGALDALELLQNIKEKLQAADDLRQ 757
Query: 465 TAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATD---KLERAN 521
+++DL +++E P + TP+ ETA L++ LK A D E+
Sbjct: 758 RIAAMERDLARFEEEVEALAEAVAP---EMLGTPADETARALKQRLKRARDTAAAAEKLA 814
Query: 522 GGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEE 581
+ EK E E + E L R
Sbjct: 815 E----------EIEEAEKEVSEAAAALDEAEARLTALLRAARCTTIEELLAAVERSDTYR 864
Query: 582 RYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFET 641
++ + V ++ + ++ LE L + LE E +
Sbjct: 865 ELRKRIAALERTLVRAGGGLSLEALVAEAAALDPDELPARLEELARDIEELEEELNELAQ 924
Query: 642 DILEKSSKITQLE-----ASIREERERA 664
++ ++ +++ A + ERE
Sbjct: 925 EVGAAKQELARMDGGSTAAELEAERESL 952
Score = 34.7 bits (80), Expect = 0.41
Identities = 70/412 (16%), Positives = 141/412 (34%), Gaps = 61/412 (14%)
Query: 448 KVERIQALEKELKLANETAEKLQKDLKEATDKLE--RANGGKPPKLGALPKTPS------ 499
V +Q+L ++ + A E+L+K+L+ L R LP TP+
Sbjct: 552 LVGELQSLRQQEEAARRRLEQLEKELEVLELALAALREAWQAQWAAAGLPLTPAEMEDWL 611
Query: 500 --VETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVL 557
TA + + +A +L+ + AL + E L
Sbjct: 612 AERATAREQVRAYFKARAELDALLDRRARLRAALRAALKAVAIVLPGEELAELLELARQL 671
Query: 558 MRDLQDSMEREADLREQLRFAEEERYQRLYSVAR-----DAFHPNLVQYLQIEKVRAESS 612
+ + + R+A L E+LR AE + +A+ L + +S
Sbjct: 672 LEEAEKQAARKASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGRAS 731
Query: 613 TEKTQITGEL-----------ESLKSKLSALEAEKKKFETDILEKSSKITQ-LEASIREE 660
EL + L+ +++A+E + +FE ++ + + + + +E
Sbjct: 732 PAGALDALELLQNIKEKLQAADDLRQRIAAMERDLARFEEEVEALAEAVAPEMLGTPADE 791
Query: 661 RERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQ 720
RA +K + +L EE+ + +KE A + + E T+L
Sbjct: 792 TARALKQRLKRARDTAAAAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLR-------- 843
Query: 721 MTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKN--------------- 765
+C+T+E+ L A ++ +E + E +++
Sbjct: 844 --------AARCTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGLSLEALVAEAAA 895
Query: 766 QSSDNVTKQITELKTQ---YEQEIKKLEDTLVQERQEYEDLTNRYDILEGEH 814
D + ++ EL E+E+ +L + +QE + E E
Sbjct: 896 LDPDELPARLEELARDIEELEEELNELAQEVGAAKQELARMDGGSTAAELEA 947
Score = 32.4 bits (74), Expect = 2.0
Identities = 99/605 (16%), Positives = 197/605 (32%), Gaps = 77/605 (12%)
Query: 280 RLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNA 339
R ++T T K L + ++ + L+ E L EK+ L R+R L A +K+
Sbjct: 167 REVQLKTRTWKDLVKALDEAEEELANLRKELRQLEKEKQRLE-RLRRLLPLLAE-RKALE 224
Query: 340 AEREA--------EALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQ-DHFREDQ 390
+ A + A E + + L L+ E+DE+ D Q
Sbjct: 225 QQLAALGEVIDLPPDAVERYEEARAELRAARRNLELLTERLEALQAELDEISLDEELLAQ 284
Query: 391 ADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCR----EVCGGMEGV 446
A +L ++ + + L R+ E + + A L A+ V +
Sbjct: 285 AAAIEALHQQRGEYRNAEQDL--PDREGEIANAREAAAALLAQIGPDADEEAVESLRPSL 342
Query: 447 NKVERIQALEK---ELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETA 503
E + LEK L A ++A ++ + ++ P P ++ A
Sbjct: 343 AAKETVTELEKRKEALDQALKSARDALEERERELKQVRAQLAALPTVTVPEPLRAALADA 402
Query: 504 EKL-----------------QKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLT 546
+ +++L +A +L G L ALP PS E+V
Sbjct: 403 LRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEE-LVALP-VPSAEQVQAFLKE 460
Query: 547 RGGSQEDPTVLMRDLQDSMEREADLREQLRFAEE--------------ERYQRLYSVAR- 591
+ L + E L QLR + R L+ R
Sbjct: 461 AEEIMQAKRQKRDRLLELEEDLETLELQLRHLDAAGAVPTEEEVAAARARRDALWQDIRR 520
Query: 592 --DAFHPNLVQYLQIEKVRAESSTE---KTQITGELESLKSKLSALEAEKKKFETDILEK 646
P Y + + + + + Q+ GEL+SL+ + A ++ E ++
Sbjct: 521 GYALLEPTASAYEEAVESADQLADRLLREAQLVGELQSLRQQEEAARRRLEQLEKELEVL 580
Query: 647 SSKITQLEASIREE-RERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLER 705
+ L + + + L+ E RE++ K + + R
Sbjct: 581 ELALAALREAWQAQWAAAGLPLTPAEMEDWLAERATAREQVRAYFKARAELDALLDRRAR 640
Query: 706 DKTSLEENLKSKET---------------QMTKTISDLQTKCSTLEKSLTAEQKQKALKE 750
+ +L LK+ Q+ + + ++L++ L ++ E
Sbjct: 641 LRAALRAALKAVAIVLPGEELAELLELARQLLEEAEKQAARKASLDERLRDAERALEEAE 700
Query: 751 KELKTKESEINVLKNQSSDNVTKQITELKTQYE--QEIKKLEDTLVQERQEYEDLTNRYD 808
+ +S + + Q D + + + + +L + ++ Q +DL R
Sbjct: 701 ERHDEAQSALEAWQEQWYDALLEAGLGGRASPAGALDALELLQNIKEKLQAADDLRQRIA 760
Query: 809 ILEGE 813
+E +
Sbjct: 761 AMERD 765
Score = 30.9 bits (70), Expect = 5.7
Identities = 39/199 (19%), Positives = 79/199 (39%), Gaps = 19/199 (9%)
Query: 622 LESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERE-----RATDLSVKAGSAAS 676
+ SL S LE E + + + + ++ +++E +E R L +
Sbjct: 125 VGSLGSVRDELEKEADE----LWKPRGRKPEINVALKELKELEAEIREVQLKTRTWKDLV 180
Query: 677 RELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEE--NLKSKETQMTKTISDLQTKCST 734
+ L++ EEL L+KE ++ ++ +LER + L K+ E Q+ +
Sbjct: 181 KALDEAEEELANLRKELRQLEKEKQRLERLRRLLPLLAERKALEQQLAALGEVIDLPPDA 240
Query: 735 LEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLV 794
+E+ A + +A + L+ + L+ + +I+ + Q + L
Sbjct: 241 VERYEEARAELRAA-RRNLELLTERLEALQAE-----LDEISLDEELLAQAAAI--EALH 292
Query: 795 QERQEYEDLTNRYDILEGE 813
Q+R EY + EGE
Sbjct: 293 QQRGEYRNAEQDLPDREGE 311
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 36.8 bits (86), Expect = 0.028
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 297 LKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEG 356
L+ +Q +EL+ E + L +EK+ L RV ELE + A +K ER+ E
Sbjct: 116 LQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEE---------- 165
Query: 357 LCEELMDENEEMKKELRYLEEEMDEM 382
+ DE +KK+ + L+ +++++
Sbjct: 166 --KRHADEIAFLKKQNQQLKSQLEQI 189
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 37.7 bits (89), Expect = 0.033
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 17/88 (19%)
Query: 295 ELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAA 354
ELL+L + EL+TE E+L E+ +LS ++ +AEAL ++
Sbjct: 29 ELLELDEERRELQTELEELQAERNALS----------KEIGQAKRKGEDAEALIAEVK-- 76
Query: 355 EGLCEELMDENEEMKKELRYLEEEMDEM 382
EL +E + ++ EL LE E++E+
Sbjct: 77 -----ELKEEIKALEAELDELEAELEEL 99
Score = 31.6 bits (73), Expect = 3.2
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 25/112 (22%)
Query: 419 ERRSEQLEAEKLEAE------------KKCREVCGGMEGVNKV-ERIQALEKELKLANET 465
ERR Q E E+L+AE +K + + V ++ E I+ALE EL
Sbjct: 36 ERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAE 95
Query: 466 AEKLQKDL-----------KEATDKLERANGGKPPKLGALPKTPSVETAEKL 506
E+L + K+ D +E G+P + PK E EKL
Sbjct: 96 LEELLLRIPNLPHDSVPVGKDEDDNVEVRRWGEPREFDFEPK-DHWELGEKL 146
>gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407). This
family of proteins is found in bacteria. Proteins in
this family are typically between 366 and 597 amino
acids in length. There is a single completely conserved
residue R that may be functionally important.
Length = 297
Score = 37.2 bits (87), Expect = 0.040
Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 19/128 (14%)
Query: 603 QIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERE 662
+V A + +T E+ +L++++ +AE Q EA
Sbjct: 125 AQAQVAAGFRPKIAALTAEIAALQAEIDEAQAEVNAAYQ--------EAQCEAEGTGGTG 176
Query: 663 RATDLSVKAGSAASR---ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKET 719
A G +L+ + L LK R + +LE K +LE N ++
Sbjct: 177 VAGK-----GPVYKEKREKLDAAQARLETLKA---RLDAAIAQLEAQKAALERNRQAAVA 228
Query: 720 QMTKTISD 727
+ I
Sbjct: 229 EKQARIEA 236
Score = 31.5 bits (72), Expect = 2.9
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 16/116 (13%)
Query: 375 LEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEK 434
L E E Q + A + L ++E Q E E
Sbjct: 114 LLEIQQEEQAAAQAQVAAGFRPKIAALTAEIAA--------LQAEIDEAQAEVNAAYQEA 165
Query: 435 KCREVCGGMEGV--------NKVERIQALEKELKLANETAEKLQKDLKEATDKLER 482
+C G GV K E++ A + L+ + L+ LER
Sbjct: 166 QCEAEGTGGTGVAGKGPVYKEKREKLDAAQARLETLKARLDAAIAQLEAQKAALER 221
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerises into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 37.5 bits (88), Expect = 0.043
Identities = 52/239 (21%), Positives = 104/239 (43%), Gaps = 26/239 (10%)
Query: 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNE 305
NE+ DQ++ L+ M + + + + L ++ + LL+ + ++E
Sbjct: 222 NEFPDQLEELKAGYREMTEEGYHFD---HLDIEKELQDLKEQIDQ--NLALLE-ELDLDE 275
Query: 306 LKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDEN 365
+ ENE++ + +L LE E A K E+ + L L E ++N
Sbjct: 276 AEEENEEIEERIDTL---YDILEKEVKAKKF---VEKNIDKLTDFL-------EHAREQN 322
Query: 366 EEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQL 425
+++ EL L++ ED+ + L+K+LE+ L ++ + + +L
Sbjct: 323 KQLLLELDRLQQSY-----TLNEDELETVRELEKQLEELEAQYDQLVERIAEKKVAYSEL 377
Query: 426 EAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERAN 484
+ E E EK+ E+ E ++ E +Q L K+ A E ++ ++ L E LE++N
Sbjct: 378 QEELEEIEKQLEEIEKEQEELS--ESLQGLRKDELEAREKLQEYRQKLHEIKRYLEKSN 434
Score = 34.1 bits (79), Expect = 0.58
Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 50/218 (22%)
Query: 617 QITGELESLKSKLSALEAE----KKKFET---DILEKSSK----ITQLE---ASIREERE 662
QI EL LK E K K+ +L KS + +LE + EE E
Sbjct: 119 QILEELNELKESEEKNRKEVEELKDKYRELRKTLLAKSFSYGPALDELEKQLDELEEEFE 178
Query: 663 RATDLSVKAGS--AASRELNQLREELTQLKKEAQRNAEKVTKLERD------------KT 708
+ +L+ ++G A L +L EE L+++ + + +L+ + +
Sbjct: 179 QFVELT-ESGDYLEAREVLLKLEEETDALEQKMEEIPPLLKELQNEFPDQLEELKAGYRE 237
Query: 709 SLEENLKSKETQMTKTISDLQTKCSTLEKSL------TAEQKQKALK----------EKE 752
EE + K + DL+ + L AE++ + ++ EKE
Sbjct: 238 MTEEGYHFDHLDIEKELQDLKEQIDQNLALLEELDLDEAEEENEEIEERIDTLYDILEKE 297
Query: 753 LKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLE 790
+K K V KN D +T + + Q +Q + +L+
Sbjct: 298 VKAK---KFVEKNI--DKLTDFLEHAREQNKQLLLELD 330
Score = 31.0 bits (71), Expect = 4.5
Identities = 25/123 (20%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEK 737
++ Q+ EEL +LK+ ++N ++V +L+ L + L +K + +L+ + LE+
Sbjct: 116 DIEQILEELNELKESEEKNRKEVEELKDKYRELRKTLLAKSFSYGPALDELEKQLDELEE 175
Query: 738 SLTAEQKQKALKE--------KELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKL 789
++ L E + L E E + L+ Q + + + EL+ ++ ++++L
Sbjct: 176 EF---EQFVELTESGDYLEAREVLLKLEEETDALE-QKMEEIPPLLKELQNEFPDQLEEL 231
Query: 790 EDT 792
+
Sbjct: 232 KAG 234
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 36.1 bits (84), Expect = 0.045
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 701 TKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEI 760
+LE++ L+ L+ KE ++ K LQ + +L+ E ++ K++EL+ K+ E+
Sbjct: 38 KQLEKEFKKLQAELQKKEKELQKEEQKLQKQ----AATLSEEARKA--KQQELQQKQQEL 91
Query: 761 NVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQ 798
+ + + ++ EL +I K + +E+
Sbjct: 92 QQKQQAAQQELQQKQQELLQPIYDKIDKAIKEVAKEKG 129
Score = 30.3 bits (69), Expect = 3.2
Identities = 16/103 (15%), Positives = 42/103 (40%), Gaps = 20/103 (19%)
Query: 643 ILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTK 702
+L +S + + +E + EL + +EL + +++ Q+ A +++
Sbjct: 26 VLSESPAGKAAQKQLEKEFK-----------KLQAELQKKEKELQKEEQKLQKQAATLSE 74
Query: 703 LERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQ 745
R K+ ++ + +LQ K ++ L +Q++
Sbjct: 75 EARKA---------KQQELQQKQQELQQKQQAAQQELQQKQQE 108
Score = 30.3 bits (69), Expect = 3.9
Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 707 KTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQ 766
+ LE+ K + ++ K +LQ + L+K + L E+ K K+ E+ + +
Sbjct: 37 QKQLEKEFKKLQAELQKKEKELQKEEQKLQK------QAATLSEEARKAKQQELQQKQQE 90
Query: 767 SSDNVTKQITELKTQYEQEIKKLEDTL 793
EL+ + ++ ++ + D +
Sbjct: 91 LQQKQQAAQQELQQKQQELLQPIYDKI 117
Score = 29.9 bits (68), Expect = 4.5
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 621 ELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELN 680
E + K+ LE E KK + ++ +K ++ + E ++++ LS +A A +EL
Sbjct: 29 ESPAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAA---TLSEEARKAKQQELQ 85
Query: 681 QLREELTQLKKEAQRNAEK 699
Q ++EL Q ++ AQ+ ++
Sbjct: 86 QKQQELQQKQQAAQQELQQ 104
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 37.2 bits (87), Expect = 0.053
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 638 KFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQL----REELTQLKKEA 693
+ D E ++ +LE ++E E + + QL RE+L +L +
Sbjct: 324 EVGVDFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETK 383
Query: 694 QRNAEKVTKLERDKTSLEENLKSK 717
++ +E++ +LE + L+E L+S
Sbjct: 384 EKLSEELEELEEELKELKEELESL 407
Score = 35.3 bits (82), Expect = 0.22
Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 608 RAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDL 667
A + TE ++ + LK +L LE E K+ E ++ + + +L + R +
Sbjct: 316 PAGTKTE-IEVGVDFPELKEELKELEEELKELEEELEKIKKLLKKLPK---KARGQLPPE 371
Query: 668 SVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKT 708
+ +L EEL +L++E + E++ L +
Sbjct: 372 KREQLEKLLETKEKLSEELEELEEELKELKEELESLYSEGK 412
Score = 34.9 bits (81), Expect = 0.25
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 282 ASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAE 341
+ T T + +L++ + EL+ E ++L +E + + +++L K
Sbjct: 315 SPAGTKTEIEVGVDFPELKEELKELEEELKELEEELEKIKKLLKKLPK-----KARGQLP 369
Query: 342 REAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDH 385
E KL + E+L +E EE+++EL+ L+EE++ +
Sbjct: 370 PEKREQLEKLLETK---EKLSEELEELEEELKELKEELESLYSE 410
Score = 34.9 bits (81), Expect = 0.31
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 680 NQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSL 739
+L+EEL +L++E + E++ K+++ L++ K Q+ + K L ++
Sbjct: 330 PELKEELKELEEELKELEEELEKIKK---LLKKLPKKARGQLPPEKREQLEK---LLETK 383
Query: 740 TAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQI 775
++ E+ELK + E+ L ++ +V K I
Sbjct: 384 EKLSEELEELEEELKELKEELESLYSEGKISVNKTI 419
Score = 34.1 bits (79), Expect = 0.43
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 243 VNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELL-KLQQ 301
V+ E +++ L EL ++ + EK+++ LL++L E L KL +
Sbjct: 327 VDFPELKEELKELEEELKELEEELEKIKK-----LLKKLPKKARGQLPPEKREQLEKLLE 381
Query: 302 RVNELKTENEDLNDEKKSLSLRVRELETEA 331
+L E E+L +E K L + L +E
Sbjct: 382 TKEKLSEELEELEEELKELKEELESLYSEG 411
Score = 33.4 bits (77), Expect = 0.77
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 425 LEAEKLEAEKKCR-EVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERA 483
++A++L + + E+ G++ E ++ LE+ELK E EK++K LK+ K
Sbjct: 308 VKAKELGSPAGTKTEIEVGVDFPELKEELKELEEELKELEEELEKIKKLLKKLPKKAR-- 365
Query: 484 NGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLER 519
P K L K +ET EKL ++L+E ++L+
Sbjct: 366 GQLPPEKREQLEKL--LETKEKLSEELEELEEELKE 399
Score = 33.4 bits (77), Expect = 0.89
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 722 TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQ 781
TKT + L E K+ E+ELK E E+ +K K +L +
Sbjct: 319 TKTE----IEVGVDFPELKEELKEL---EEELKELEEELEKIKKLLKKLPKKARGQLPPE 371
Query: 782 YEQEIKKLEDTLVQERQEYEDLTNRYDILEGE 813
++++KL +T + +E E+L L+ E
Sbjct: 372 KREQLEKLLETKEKLSEELEELEEELKELKEE 403
Score = 30.7 bits (70), Expect = 6.5
Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 713 NLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVT 772
LK + ++ + + +L+ + ++K L K+ + K ++ E
Sbjct: 331 ELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEK------------ 378
Query: 773 KQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDI 809
+ E K + +E+++LE+ L + ++E E L + I
Sbjct: 379 --LLETKEKLSEELEELEEELKELKEELESLYSEGKI 413
>gnl|CDD|218079 pfam04420, CHD5, CHD5-like protein. Members of this family are
probably coiled-coil proteins that are similar to the
CHD5 (Congenital heart disease 5) protein. In
Saccharomyces cerevisiae this protein localises to the
ER and is thought to play a homeostatic role.
Length = 161
Score = 35.7 bits (83), Expect = 0.059
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 672 GSAASRELNQLREELTQLKKE-----AQRNAEKVTKLER--DKTSLE-----ENLKSKET 719
S ++E +QLR+E+ +LK+E AQ K KL R DK + E + L ++++
Sbjct: 35 LSKDAKEQSQLRKEILELKRELNSISAQDEFAKWAKLNRKLDKLTDELEKLKKELTAQKS 94
Query: 720 QMTKTIS 726
+ +
Sbjct: 95 KFKWVLK 101
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 35.9 bits (83), Expect = 0.062
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 673 SAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKET----------QMT 722
S ++L++L+EEL L++ ++ L+ D L E LKS E ++
Sbjct: 82 SELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELA 141
Query: 723 KTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQS 767
K + +L+ + L E ++ + L+ E+ L Q
Sbjct: 142 KELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLLEQL 186
Score = 35.1 bits (81), Expect = 0.12
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 295 ELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAA-EREAEALRTKLAA 353
EL L++R+ EL++E EDL ++ + L ++ LE + ++S +E LR L
Sbjct: 94 ELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAKELRELRQDLRE 153
Query: 354 AEGLCEELMDENEEMKKELRYLEEEMDEMQD 384
EEL +E E +++ L+ L+E + E+Q
Sbjct: 154 E---VEELREELERLQENLQRLQEAIQELQS 181
Score = 32.8 bits (75), Expect = 0.72
Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 359 EELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKS 418
EEL E E+K++L L+EE++++++ E ++ E LK++L+ + + L +L
Sbjct: 75 EELQGELSELKQQLSELQEELEDLEERIAELES-ELEDLKEDLQLLRELLKSLEERLESL 133
Query: 419 ERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATD 478
E ++L E E + RE +VE ++ + L+ + ++ ++L+ +
Sbjct: 134 EESIKELAKELRELRQDLRE---------EVEELREELERLQENLQRLQEAIQELQSLLE 184
Query: 479 KL 480
+L
Sbjct: 185 QL 186
Score = 30.9 bits (70), Expect = 2.7
Identities = 18/102 (17%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 725 ISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQ 784
+S+L+ + S L++ L +++ A E EL+ + ++ +L+ + +++ L+ ++
Sbjct: 81 LSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKS-LEERLESLEESIKE 139
Query: 785 EIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKE 826
K+L + R+E E+L + L+ ++ ++ + +
Sbjct: 140 LAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQS 181
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 37.0 bits (86), Expect = 0.079
Identities = 62/280 (22%), Positives = 106/280 (37%), Gaps = 34/280 (12%)
Query: 233 ETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLR----RLASMETTT 288
E E L N E Q L D ++A+ E E+ I LR R+ S+
Sbjct: 164 EAAPELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAEL 223
Query: 289 SKTTASELLKLQQRVNELKTEN------------EDLNDEKKSLSLRVRELETEAAAFKK 336
+L L+ ++K E E L ++ S + +LE + A +
Sbjct: 224 QTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQLELDEAEEEL 283
Query: 337 SNAA----------EREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386
ERE EA E L D E+ K+ +L+EE++ +++ +
Sbjct: 284 GLIQEKIESLYDLLEREVEAKNV----VEENLPILPDYLEKAKENNEHLKEEIERVKESY 339
Query: 387 R--EDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGME 444
R E + +KEL++ + + E +L+ E EK ++ E
Sbjct: 340 RLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQE 399
Query: 445 GVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERAN 484
V E + +L K+ A E E+L+ L E +E++N
Sbjct: 400 KVQ--EHLTSLRKDELEARENLERLKSKLHEIKRYMEKSN 437
Score = 34.3 bits (79), Expect = 0.49
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 595 HPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEK-KKFETDILEKSSKITQL 653
P L YL EK + + K +I E +L+ E +KFE ++ E S + ++
Sbjct: 311 LPILPDYL--EKAKENNEHLKEEI--ERVKESYRLAETELGSVRKFEKELKELESVLDEI 366
Query: 654 EASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEEN 713
+I + A S L ++ + LT ++ E ++ E +T L +D+ EN
Sbjct: 367 LENIEAQE--------VAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEAREN 418
Query: 714 LK 715
L+
Sbjct: 419 LE 420
Score = 33.5 bits (77), Expect = 0.95
Identities = 48/246 (19%), Positives = 84/246 (34%), Gaps = 41/246 (16%)
Query: 605 EKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIRE----- 659
+ E I LE LK +L + E D E ++ ++ I
Sbjct: 240 DMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQLELD--EAEEELGLIQEKIESLYDLL 297
Query: 660 ERERATDLSVKAGSAASRE-LNQLREELTQLKKEAQR----------NAEKVTKLERDKT 708
ERE V+ + L + +E LK+E +R V K E++
Sbjct: 298 EREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELK 357
Query: 709 SLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQ--------KALKEKELKTKE 757
LE L + S+LQ +EK+LT + + +L++ EL+ +E
Sbjct: 358 ELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARE 417
Query: 758 SEINVLKNQSSD-----------NVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNR 806
+ LK++ + + + L EI+ L L + E ++
Sbjct: 418 -NLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSAL 476
Query: 807 YDILEG 812
DI
Sbjct: 477 VDIATE 482
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 35.3 bits (82), Expect = 0.099
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 25/181 (13%)
Query: 624 SLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVK---------AGSA 674
SLK +++ ++ ++ E + E + + +L +++ E +L K +
Sbjct: 31 SLKEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLKN 90
Query: 675 ASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCST 734
L +L +EL LK E++ ++ K+ER++ L + + I D+Q K T
Sbjct: 91 LKARLKELEKELKNLKWESEVLEQRFEKVERERDELYD-------KFEAAIQDVQQK--T 141
Query: 735 LEKSLTAEQKQKALKEKELKTKESEINV------LKNQSSDNVTKQITELKTQYEQEIKK 788
K+L EQK +AL E EL+ KE+++N L + V++++ ++ + Q IK
Sbjct: 142 GLKNLLLEQKLEALNE-ELEKKEAQLNEVLAAANLDPAALQAVSEKLDDVLEEKNQLIKD 200
Query: 789 L 789
L
Sbjct: 201 L 201
Score = 33.7 bits (78), Expect = 0.35
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 343 EAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQAD--EYSSLKKE 400
E ++ E L E+ EN+ + + L+ EEE++E++ ++ + D +LK
Sbjct: 35 EIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLKNLKAR 94
Query: 401 LEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVE-RIQALEKEL 459
L++ K + L ++ E+R E++E E+ E K + K + LE++L
Sbjct: 95 LKELEKELKNLKWESEVLEQRFEKVERERDELYDKFEAAI--QDVQQKTGLKNLLLEQKL 152
Query: 460 KLANETAEKLQKDLKE 475
+ NE EK + L E
Sbjct: 153 EALNEELEKKEAQLNE 168
Score = 31.4 bits (72), Expect = 2.2
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 712 ENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKN-QSSDN 770
+K E K ++++ + L + L +++ K+LK E + LKN ++
Sbjct: 37 AEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLKNLKARLK 96
Query: 771 V-TKQITELKTQYEQEIKKLEDTLVQERQEYED 802
K++ LK + E ++ E + +ER E D
Sbjct: 97 ELEKELKNLKWESEVLEQRFE-KVERERDELYD 128
Score = 29.5 bits (67), Expect = 8.8
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 22/133 (16%)
Query: 680 NQLREELTQLKKEAQRN--------------AEKVTKLERDKTSLEENLK--SKETQMTK 723
L+EE+ ++KK + N E + K E + L + LK K+ Q K
Sbjct: 30 KSLKEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLK 89
Query: 724 TISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNV--TKQITELKTQ 781
L+ + LEK L + + + E+ + E E + L ++ + +Q T LK
Sbjct: 90 N---LKARLKELEKELKNLKWESEVLEQRFEKVERERDELYDKFEAAIQDVQQKTGLKNL 146
Query: 782 -YEQEIKKLEDTL 793
EQ+++ L + L
Sbjct: 147 LLEQKLEALNEEL 159
>gnl|CDD|218908 pfam06136, DUF966, Domain of unknown function (DUF966). Family of
plant proteins with unknown function.
Length = 308
Score = 36.2 bits (84), Expect = 0.10
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 118 SSTNLSSVSSSNDSQNSSRRPPPEDSSNEDDDYR----------STKYVVRRRTSHLPAT 167
+ + +D+ +RR SS++ +Y+ ST+ RR A
Sbjct: 99 EEASSRKLQEESDTPPVNRRANQSWSSSDLAEYKVYKAEEPADASTQTDDRRSRDSSEAE 158
Query: 168 STSSSNAEPSTSSNTTRTRSSASPR 192
ST S E S S+++ SS+SP
Sbjct: 159 STELSREEISPPSSSSSPSSSSSPE 183
>gnl|CDD|163506 TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a leader peptide
region related to nitrile hydratase. We designate the
class of bacteriocin as Nitrile Hydratase Leader
Microcin, or NHLM. This family, therefore, is designated
as NHLM bacteriocin system secretion protein. Some but
not all NHLM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters [Transport
and binding proteins, Amino acids, peptides and amines,
Cellular processes, Biosynthesis of natural products].
Length = 421
Score = 36.4 bits (84), Expect = 0.10
Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 34/187 (18%)
Query: 608 RAESSTEK-TQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATD 666
R + S +K TQ+ +LE ++ K+ +KS + LE +I RE
Sbjct: 97 RLQESYQKLTQLQEQLE----EVRNYTGRLKEGRERHFQKSKEA--LEETIGRLREELAA 150
Query: 667 LSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTIS 726
LS RE+ + R L++ +R+ + ++ + K++ +T +
Sbjct: 151 LS--------REVGKQRGLLSRGLATFKRDRILQQQWREEQEKYDAADKARAIYALQTKA 202
Query: 727 DLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEI 786
D + + L+ A+ + + EKEL+T E+ I + EI
Sbjct: 203 DERNLETVLQSLSQADFQLAGVAEKELETVEARIK-------------------EARYEI 243
Query: 787 KKLEDTL 793
++LE+ L
Sbjct: 244 EELENKL 250
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 35.9 bits (83), Expect = 0.11
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 267 EKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRE 326
E+ ERE+ + L R+ ME + EL + ++ EL+ + + +E + L + E
Sbjct: 1 EEAEREQQE-LEERMEQMEEDMRRAQ-KELEEYEETALELEEKLKQEEEEAQLLEKKADE 58
Query: 327 LETEAAAFKK-SNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDH 385
LE E ++ + A+E E E L ++ A +L +E E+ + E R L++E+ E Q+
Sbjct: 59 LEEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEA 118
Query: 386 FRE 388
Sbjct: 119 HER 121
Score = 30.5 bits (69), Expect = 5.3
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 621 ELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELN 680
E + L+ ++ +E + ++ + ++ E +LE +++E E A L KA E
Sbjct: 6 EQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKA-DELEEENR 64
Query: 681 QLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSL 739
+L EE ++E +R +V + + LEE + KE + + +L+ E++
Sbjct: 65 RLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERAR 123
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 36.7 bits (85), Expect = 0.11
Identities = 50/257 (19%), Positives = 88/257 (34%), Gaps = 39/257 (15%)
Query: 603 QIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERE 662
Q+ + + S Q T + LKS + + E++K E K I + I E
Sbjct: 711 QLNNIEQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEV---YKHQIINRKNEFILHLYE 767
Query: 663 RATDLS----------------VKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERD 706
DL + + S ++N L+E + + KLE
Sbjct: 768 NDKDLPDGKNTYEEFLQYKDTILNKENKISNDINILKENKKNNQDLLNSYNILIQKLEAH 827
Query: 707 KTSLEENLKSKETQMTKTIS--DLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLK 764
+E LK Q+ + D LEK + K+++ IN++K
Sbjct: 828 TEKNDEELK----QLLQKFPTEDENLNLKELEKEFNENNQIVDNIIKDIENMNKNINIIK 883
Query: 765 N-----QSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILE-GEHVDIK 818
S++ + + L KLE + N +I++ E +++
Sbjct: 884 TLNIAINRSNSNKQLVEHLLNNKIDLKNKLEQHMKI--------INTDNIIQKNEKLNLL 935
Query: 819 ASLVKEKENNHGRLQQT 835
+L KEKE +L T
Sbjct: 936 NNLNKEKEKIEKQLSDT 952
Score = 33.7 bits (77), Expect = 0.83
Identities = 41/209 (19%), Positives = 89/209 (42%), Gaps = 4/209 (1%)
Query: 632 LEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKK 691
+E K++F +++ EK K+ Q+E ++ E + + + A + + K+
Sbjct: 2406 VETIKQRFSSNLPEKE-KLHQIEENLNEIKNIMNETKRISNVDAFTNKILQDIDNEKNKE 2464
Query: 692 EAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEK 751
NAEK+ L + TS E +KS+ + + ++ K + K + +
Sbjct: 2465 NNNMNAEKIDDLIENVTSHNEKIKSELLIINDALRRVKEKKDEMNKLFNSLTENNNNNNN 2524
Query: 752 ELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQ--ERQEYEDLTNRYDI 809
K + N+ +V+K + EL + + EIK+LE+ ++ E+ + E+ +
Sbjct: 2525 SAKNIVDNSTYIINELESHVSK-LNELLSYIDNEIKELENEKLKLLEKAKIEESRKERER 2583
Query: 810 LEGEHVDIKASLVKEKENNHGRLQQTQKG 838
+E E + + RLQ+ ++
Sbjct: 2584 IESETQEDNTDEEQINRQQQERLQKEEEQ 2612
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 36.3 bits (84), Expect = 0.11
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 604 IEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERER 663
IE+ + K +I +E L + LE + + E + E+ +LE + E +ER
Sbjct: 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558
Query: 664 ATDLSVKAGSAASRELNQLREELTQLKKEAQR---NAEKVTKLERDKTSLEEN 713
+ ++ A L L++E+ + +E + + K K D L+E
Sbjct: 559 ERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKET 611
Score = 30.2 bits (68), Expect = 8.5
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 22/130 (16%)
Query: 350 KLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCR 409
KL+A E E+ + E++ KE L++E+++ E+ + + K ELE+ A+
Sbjct: 519 KLSALEKELEQKNEHLEKLLKEQEKLKKELEQ----EMEELKERERNKKLELEKEAQ--- 571
Query: 410 ILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKL 469
E L+A K E E RE+ K I+++E +KL +
Sbjct: 572 -------------EALKALKKEVESIIRELKEKKIHKAKE--IKSIEDLVKLKETKQKIP 616
Query: 470 QKDLKEATDK 479
QK DK
Sbjct: 617 QKPTNFQADK 626
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 36.1 bits (84), Expect = 0.11
Identities = 37/190 (19%), Positives = 77/190 (40%), Gaps = 34/190 (17%)
Query: 558 MRDLQDSMER---EADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQ--IEKVRAESS 612
+ L+ + R EAD + + F ++ D P L++ Q E ++
Sbjct: 90 VLRLEAEVARLRAEADSQAAIEFPDDLLSAE------DPAVPELIKGQQSLFESRKSTLR 143
Query: 613 TEKTQITGELESLKSKLSALEAEKKKFET------DILEKSSKITQLEASIR-----EER 661
+ I +++ L+++L+ L+A+ + + LE K+ + R ER
Sbjct: 144 AQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELER 203
Query: 662 ERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM 721
ERA A EL +L EL LK++ + ++E+ E + + T+
Sbjct: 204 ERA---------EAQGELGRLEAELEVLKRQIDELQLERQQIEQTFR---EEVLEELTEA 251
Query: 722 TKTISDLQTK 731
+++L+ +
Sbjct: 252 QARLAELRER 261
Score = 35.4 bits (82), Expect = 0.18
Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 31/169 (18%)
Query: 559 RDLQDSMEREADLREQLRFAEEE---RYQRLYSVARDAFHPNLVQYL-QIEKVRAESSTE 614
D Q ++E DL A E Q L+ + L L QI+++ AE +
Sbjct: 104 ADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGL 163
Query: 615 KTQITG----------ELESLK--------SKLSALEAEKK--KFETDILEKSSKITQLE 654
+ Q+ ELE+ + S+L LE E++ + + ++ +++ L+
Sbjct: 164 QAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLK 223
Query: 655 ASIREERERATDLSVKAGSAASRELNQ-------LREELTQLKKEAQRN 696
I E + + EL + LRE L + + QR
Sbjct: 224 RQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRL 272
Score = 32.3 bits (74), Expect = 1.6
Identities = 39/194 (20%), Positives = 76/194 (39%), Gaps = 20/194 (10%)
Query: 251 QIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTEN 310
L ++ ++A+ +L E + EL+K QQ + ++
Sbjct: 82 DAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQ--SLFESRK 139
Query: 311 EDLNDEKKSLSLRVRELETEAAAFK-KSNAAEREAEALRTKLAAAEGLCE---------- 359
L + + + ++++LE E A + + A ++ E + +L A L E
Sbjct: 140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELL 199
Query: 360 ELMDENEEMKKELRYLEEE-------MDEMQDHFREDQADEYSSLKKELEQTAKNCRILS 412
EL E E + EL LE E +DE+Q ++ + + +EL + L
Sbjct: 200 ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELR 259
Query: 413 FKLRKSERRSEQLE 426
+L K+ R ++L
Sbjct: 260 ERLNKARDRLQRLI 273
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 36.2 bits (84), Expect = 0.14
Identities = 50/390 (12%), Positives = 106/390 (27%), Gaps = 58/390 (14%)
Query: 597 NLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSS-------K 649
V++ I K ++E T + + E + E D L K
Sbjct: 1044 GYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEK 1103
Query: 650 ITQLEASIRE-ERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKT 708
+ +L A + + E+E + +L++ E L + ++ ++ K +L+
Sbjct: 1104 VEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTK 1163
Query: 709 SLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSS 768
L+ + ++K+K+ +K K + K S
Sbjct: 1164 GKASKLRKP------------------KLKKKEKKKKKSSADKSKKASVVGNS--KRVDS 1203
Query: 769 DNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENN 828
D K + D + + + + +K K+ ++
Sbjct: 1204 DEKRK------------LDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSS 1251
Query: 829 HGRLQQTQKGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRASQ 888
+ S SK+ K P + ++ ++
Sbjct: 1252 KSSEDNDEF----SSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTK 1307
Query: 889 LPPTPP-----TTEESQNRIRRAAFAAKKSVSTESDHTGESSSRALHRKGSLYRKSLSLE 943
+ + + + KKS + + SSR L R S S +
Sbjct: 1308 KKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSED 1367
Query: 944 QTSQLAQEENIWKMTDDNDSSLTSFQSIDD 973
DD++ DD
Sbjct: 1368 DDD---------SEVDDSEDEDDEDDEDDD 1388
Score = 31.6 bits (72), Expect = 3.5
Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 6/143 (4%)
Query: 17 GFHPQVRWPTRCKRCFRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRDYKEHGN 76
V+ K E + +DL K+ ++P S S K
Sbjct: 1235 PKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDG 1294
Query: 77 RNRDNDLRKDDFTVSSPSLSSWTSASTIRESEKKNEGRSWTSSTNLSSVSSSNDSQNSSR 136
+ + + T + + +KK+E ++ + + V ++ SQ+S
Sbjct: 1295 ES-NGGSKPSSPT-KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRL 1352
Query: 137 RPPP----EDSSNEDDDYRSTKY 155
P DSS+EDDD
Sbjct: 1353 LRRPRKKKSDSSSEDDDDSEVDD 1375
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 35.8 bits (83), Expect = 0.17
Identities = 47/285 (16%), Positives = 105/285 (36%), Gaps = 18/285 (6%)
Query: 602 LQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREER 661
L R + S + I E+E+L+++L + + +I +++ + + S+
Sbjct: 191 LTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250
Query: 662 ERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM 721
++ G E QL +L +++ + N ++ +L D L +
Sbjct: 251 KKFRS----EGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPL--------LLI 298
Query: 722 TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQ 781
+ + + E+S + Q+ L+E++ + ES + +++V + EL
Sbjct: 299 PNLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESLPKL--ALPAEHVKEIAAELAEI 356
Query: 782 YEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWI 841
+ E E L ++ E D K+ L+KE + + I
Sbjct: 357 DKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELREL--EEELAEVDKKI 414
Query: 842 SKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRA 886
S P + +I E ++ ++ + ++ L LK A
Sbjct: 415 STIP--SEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEA 457
Score = 34.7 bits (80), Expect = 0.41
Identities = 66/318 (20%), Positives = 114/318 (35%), Gaps = 50/318 (15%)
Query: 217 RRKENLETDTESLAGTETTDTTETTLVNDNE-YSDQIDLLRHELDNMKAKCEKLER---- 271
RR++ E + L+ E + E + +I LR+EL+ + E LE+
Sbjct: 196 RRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS 255
Query: 272 ------EKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVR 325
E+ + L R+L +E K ++L +L L L+ K L +
Sbjct: 256 EGGDLFEEREQLERQLKEIEAA-RKANRAQLRELAADPLPLLLIPNLLDSTKAQLQ---K 311
Query: 326 ELETEAAAFKKSNAAEREAEALRT--KLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQ 383
E +++ + ER+ E L + KLA +E+ E E+ K + E+
Sbjct: 312 EEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKP-ATTDSEIPHRL 370
Query: 384 DHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGM 443
Q + K R+ + QL E E E++ EV +
Sbjct: 371 SGSELTQLEVLIQQVK----------------RELQDAKSQLLKELRELEEELAEVDKKI 414
Query: 444 EGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETA 503
+ E+I L +EL A + + +++E +LE E
Sbjct: 415 STIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLK----------------EAI 458
Query: 504 EKLQKDLKEATDKLERAN 521
E L+K L E T + A
Sbjct: 459 EALRKTLDEKTKQKINAF 476
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 35.8 bits (83), Expect = 0.18
Identities = 57/319 (17%), Positives = 110/319 (34%), Gaps = 50/319 (15%)
Query: 361 LMDENEEMKKELRYLE----EEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLR 416
L E + + EL E+++E E E LK +LS L
Sbjct: 14 LKSELDPVLAELHDFGLVHLEDLEEG-----EKGLKELEKLKVAEVAQISLSSLLSEVLD 68
Query: 417 KSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVE-RIQALEKELKLANETAEKLQKDLKE 475
+ LE E V K+E +++LE+ +K A + + ++++ ++
Sbjct: 69 YLRSV-KGLEGRLFILP----------EEVEKLEAELKSLEEVIKPAEKFSSEVEELTRK 117
Query: 476 ATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTP 535
++L + + L L + L L G K +
Sbjct: 118 LEERLSELDE-ELEDLEDL------LEELEPLAYLDFDLSLL---RGLKFLLVRL----G 163
Query: 536 SVEKVSRETLTRGGSQEDPTVLMRDLQDSMER----EADLREQLRFAEEERYQRLYSVAR 591
V + E L G +++ + +++ S+ A+ +++ E LY V
Sbjct: 164 LVRREKLEAL-VGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPE 222
Query: 592 DAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLS--------ALEAEKKKFET-D 642
P ++E+V AE E + ELE+L K++ LE EK +
Sbjct: 223 FDGGP-SELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKALGDVLS 281
Query: 643 ILEKSSKITQLEASIREER 661
L ++ +E + +
Sbjct: 282 KLARTEYTLAIEGWVPADE 300
Score = 32.7 bits (75), Expect = 1.5
Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 704 ERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVL 763
E +K E ++S L ++ +S+ + + + +E++ E+E+ L
Sbjct: 38 EGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSL 97
Query: 764 KNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILE-GEHVDIKASLV 822
+ V K + ++ E+ +KLE+ L + +E EDL + + LE ++D SL+
Sbjct: 98 EE-----VIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLL 152
Query: 823 KEKE 826
+ +
Sbjct: 153 RGLK 156
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 35.6 bits (82), Expect = 0.19
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 21/150 (14%)
Query: 652 QLEASIREERERATDLSVKAGSAASRELNQLREE-LTQLKKEAQRNAEKVTKLERDKTSL 710
Q ++R + ER + K A RE L++E L + K+EA++ E++ E++ S
Sbjct: 42 QEAVNLRGKAERDAEHIKKT---AKRESKALKKELLLEAKEEARKYREEI---EQEFKSE 95
Query: 711 EENLKSKETQMTKTISDLQTKCSTL-EKSLTAEQKQKALKEKELKTKESEINVLKNQSSD 769
+ LK E+++T+ + L K L K T E K+++L +K E E
Sbjct: 96 RQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDERE---------- 145
Query: 770 NVTKQITELKTQYEQEIKKLEDTLVQERQE 799
+Q+ +L+ Q + E++++ E +E
Sbjct: 146 ---EQVEKLEEQKKAELERVAALSQAEARE 172
Score = 35.2 bits (81), Expect = 0.22
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 20/187 (10%)
Query: 625 LKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVK-AGSAASRELNQLR 683
+KS A E E + + K + I++ +R + K A E + R
Sbjct: 26 MKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYR 85
Query: 684 EELTQ--------LKKEAQRNAEKVTKLER---DKTSLEENLKSKETQMT---KTISDLQ 729
EE+ Q LK+ R E+ T L+R + +S E+ L+SKE +T K I + +
Sbjct: 86 EEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDERE 145
Query: 730 TKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKL 789
+ LE EQK+ L+ ++ ++ ++ + +T +I + E+E+K
Sbjct: 146 EQVEKLE-----EQKKAELERVAALSQAEAREIILAETENKLTHEIATRIREAEREVKDR 200
Query: 790 EDTLVQE 796
D + ++
Sbjct: 201 SDKMAKD 207
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 35.8 bits (82), Expect = 0.19
Identities = 59/364 (16%), Positives = 106/364 (29%), Gaps = 52/364 (14%)
Query: 450 ERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKT--PSVETAEKLQ 507
E+I AL++ A A EA ++ +G L + A+K+
Sbjct: 287 EQIAALQRAGDTAAAAAA-----AAEAAAAMDDRTARVKENMGTLETAWDALADAAKKMW 341
Query: 508 KDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRET--LTRGGSQEDPTVLMRDLQDSM 565
+ + ++A KL A + + + +
Sbjct: 342 DAVLGIGREDKQAALLAA-KLAAEKLARVTAQGALNARLKLAQDDLTQAELNYAAADQAA 400
Query: 566 EREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESL 625
+E L + AE Q + + ++ + L
Sbjct: 401 NQEGALNAREDEAEVLSTQEERRDILKNLLADAEKRTARQEELNK----------ALAKA 450
Query: 626 KSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREE 685
K + A+ Q + RE + R +AA R Q+
Sbjct: 451 KILQADKAAKAY--------------QEDILQREAQSR------GKTAAAERSQEQMTAA 490
Query: 686 LTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQ 745
L L Q+ A+ ++K S +++L K ++ Q E Q+Q
Sbjct: 491 LKALLAFQQQIADLSGA--KEKASDQKSLLWK--------AEEQYALLKEEAKQRQLQEQ 540
Query: 746 KALKE--KELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDL 803
KAL E KE S++ L +Q +D +Q E+ + L Q
Sbjct: 541 KALLEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGSDLYREALAQNAAALNKA 600
Query: 804 TNRY 807
N
Sbjct: 601 LNEL 604
Score = 34.2 bits (78), Expect = 0.54
Identities = 39/245 (15%), Positives = 75/245 (30%), Gaps = 13/245 (5%)
Query: 249 SDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKT 308
+ + A +L+ + D+ L + L + L T
Sbjct: 359 AKLAAEKLARVTAQGALNARLKLAQDDLTQAELNYAAADQAANQEGALNAREDEAEVLST 418
Query: 309 ENEDLNDEKKSLS------LRVRELETEAAAFKKSNA---AEREAEALRTKLAAAEGLCE 359
+ E + K L+ R EL A K A A+ E + + A + G
Sbjct: 419 QEERRDILKNLLADAEKRTARQEELNKALAKAKILQADKAAKAYQEDILQREAQSRGKTA 478
Query: 360 ELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSE 419
E+M L+ L ++ D A E +S +K L A+ L + K
Sbjct: 479 AAERSQEQMTAALKALLAFQQQIADL---SGAKEKASDQKSLLWKAEEQYALLKEEAKQR 535
Query: 420 RRSEQLEAEKLEAEK-KCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATD 478
+ EQ + + E + + + + ++ ++ L +
Sbjct: 536 QLQEQKALLEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGSDLYREALAQNAA 595
Query: 479 KLERA 483
L +A
Sbjct: 596 ALNKA 600
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 35.9 bits (83), Expect = 0.20
Identities = 31/158 (19%), Positives = 47/158 (29%), Gaps = 15/158 (9%)
Query: 55 SSPSLSSWTSASTIRDYKEHGNRNRDNDLRKDDFTVSSPSL-SSWT--------SASTIR 105
P SS SAS G D+ + SS S W + I
Sbjct: 205 RPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPIT 264
Query: 106 ESEKKNEGRSWTSSTNLSSVSSSNDSQNSSRRPPP---EDSSNEDDDYRSTKYVVRRRTS 162
+ E W ++ +SS+ S P S R++ R S
Sbjct: 265 LPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRES 324
Query: 163 HLPATSTSSSNAEPSTSSNTTRTRSSASPRLKTPDKPS 200
+TS+SS E S + + S + + P
Sbjct: 325 SSSSTSSSS---ESSRGAAVSPGPSPSRSPSPSRPPPP 359
Score = 34.4 bits (79), Expect = 0.58
Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 11/125 (8%)
Query: 90 VSSPSLSSWTSASTIRESEKKNEGRSWTSSTNLSSVSSSNDSQNSSRRPPPEDS--SNED 147
S S S + S+ R S + R +SS+ SS S S+ S P P S +
Sbjct: 298 PSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSS-SESSRGAAVSPGPSPSRSPSPSRP 356
Query: 148 DDYRSTKYVVRRRTSHLPATSTSSSNAEPS--------TSSNTTRTRSSASPRLKTPDKP 199
+R +S ++S P+ R + P + P
Sbjct: 357 PPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSP 416
Query: 200 SKADV 204
A
Sbjct: 417 LDAGA 421
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 35.4 bits (82), Expect = 0.21
Identities = 62/336 (18%), Positives = 119/336 (35%), Gaps = 56/336 (16%)
Query: 598 LVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFET-----DILEKSSKITQ 652
V+ + + E + + + T + S E + E + +
Sbjct: 81 QVKIPRQSGLSEEVAEAEAKATSVAAEATTPKSIQELVEALEELLEELLKETASDPVVQE 140
Query: 653 LEASIRE------ERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAE---KVTKL 703
L + + E DL SA EL+QL ++L +LK E + E K +
Sbjct: 141 LVSIFNDLIDSIKEDNLKDDLESLIASA-KEELDQLSKKLAELKAEEEEELERALKEKRE 199
Query: 704 ERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVL 763
E EE L E++ L+ + ++ L + ++K +EL+ +
Sbjct: 200 ELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKL--RQELERQAEAHE-- 255
Query: 764 KNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEY----EDLTNRYDILEGEHVDIKA 819
+ + + Q EL+ ++ +EIK + + +ER +L +R LE
Sbjct: 256 -QKLKNELALQAIELQREFNKEIK---EKVEEERNGRLAKLAELNSRLKGLE----KALD 307
Query: 820 SLVKEKENNHGRLQQTQ-----------KGMWISKRPWSKK----RKITTEPSVAKE--- 861
S + ++ NH ++QQ G S RP K+ +++ + +
Sbjct: 308 SRSEAEDENH-KVQQLWLAVEALKSALKSGSAGSPRPLVKELDALKELAKDDELVDAALA 366
Query: 862 ------EHSKSYQLQTTLQRLTEVAAELKRASQLPP 891
+ R +A EL++AS LP
Sbjct: 367 SLPPEASQRGILSEEQLRNRFNLLAPELRKASLLPE 402
Score = 30.8 bits (70), Expect = 6.4
Identities = 36/197 (18%), Positives = 74/197 (37%), Gaps = 14/197 (7%)
Query: 619 TGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREE--RERATDLSVKAGSAAS 676
+ ++S + + K + E ++ + EE A SV A +
Sbjct: 52 EEDPTLRDPQISVVSSVTKLSKGPKDEPKQVKIPRQSGLSEEVAEAEAKATSVAAEATTP 111
Query: 677 RELNQLREELTQLKKEA---QRNAEKVTKLERDKTSLEENLKSKE--TQMTKTISDLQTK 731
+ + +L E L +L +E + V +L L +++K + I+ + +
Sbjct: 112 KSIQELVEALEELLEELLKETASDPVVQELVSIFNDLIDSIKEDNLKDDLESLIASAKEE 171
Query: 732 CSTLEKSLTAEQK------QKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQE 785
L K L + ++ALKEK + L + +L+ ++E+E
Sbjct: 172 LDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFERE 231
Query: 786 IKKLEDTLVQE-RQEYE 801
++L ++ RQE E
Sbjct: 232 KEELRKKYEEKLRQELE 248
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 35.4 bits (82), Expect = 0.21
Identities = 49/231 (21%), Positives = 103/231 (44%), Gaps = 25/231 (10%)
Query: 604 IEKVRAESSTEKTQITGEL----ESLKSKLSALEAEKKKFETDILEKSS---KITQLEAS 656
K E+ K EL +++K+++ L E DI + S+ K+ A
Sbjct: 207 QRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAK 266
Query: 657 IREERERATDLSV--KAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEE-- 712
I+ + E+ + + G Q+ E ++ K + E LE+ T+++E
Sbjct: 267 IKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELE 326
Query: 713 NLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVT 772
+ + + +K + +L+ K ST ++SL + K ++ I L+ + DN
Sbjct: 327 EIMDEFNEQSKKLLELKNKISTNKQSLITL-------VDKAKKVKAAIEELQAEFVDN-A 378
Query: 773 KQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVK 823
+++ +L+ + ++ +K + LV+E+ +T D+L+ IKAS++K
Sbjct: 379 EELAKLQDELDKIVKTKSE-LVKEKYHRGIVT---DLLKDS--GIKASIIK 423
Score = 33.8 bits (78), Expect = 0.72
Identities = 44/243 (18%), Positives = 93/243 (38%), Gaps = 34/243 (13%)
Query: 247 EYSDQIDLLRHELDNMKAKCEKLEREKSDIL-LRRLASMETTTSKTTASELLKLQQRVNE 305
E + QI L ++D+++ ++++ +I R+ + EL++ +
Sbjct: 178 ELNQQIQTLDMKIDHIQ---QQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAK---T 231
Query: 306 LKTENEDLNDEKKSLSLRVRELETEAAAFKKSN------AAEREAEALRTKLAAAEGLCE 359
+K E E+L DE +L V ++E +AA K N ++ E K+ G+C
Sbjct: 232 IKAEIEELTDELLNL---VMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCP 288
Query: 360 ELMDENEEMKKELRYLEEEMDEMQDHFRE--DQADEYSSLKKELEQTAKNCRILSFKLRK 417
+ E + +++++ E+Q + DE + E + +K L K+
Sbjct: 289 TCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST 348
Query: 418 SERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEAT 477
+++ L + + + I+ L+ E E KLQ +L +
Sbjct: 349 NKQSLITLVDKAKKVKAA----------------IEELQAEFVDNAEELAKLQDELDKIV 392
Query: 478 DKL 480
Sbjct: 393 KTK 395
Score = 33.1 bits (76), Expect = 1.1
Identities = 37/199 (18%), Positives = 72/199 (36%), Gaps = 9/199 (4%)
Query: 634 AEKKKFETDILEK---SSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLK 690
++K D+L+ S + IRE ++ L +K + + Q K
Sbjct: 150 PARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRK 209
Query: 691 KEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKE 750
K + A K K + + + +K++ ++T + +L +L A +
Sbjct: 210 KNGENIARKQNKYD-ELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIK 268
Query: 751 KELKTKESEINVL-KNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDI 809
+++ + I + K T+QI+E I K++D L + + E L D
Sbjct: 269 SKIEQFQKVIKMYEKGGVCPTCTQQISE----GPDRITKIKDKLKELQHSLEKLDTAIDE 324
Query: 810 LEGEHVDIKASLVKEKENN 828
LE + K E
Sbjct: 325 LEEIMDEFNEQSKKLLELK 343
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 35.6 bits (82), Expect = 0.21
Identities = 68/368 (18%), Positives = 141/368 (38%), Gaps = 48/368 (13%)
Query: 135 SRRPPPEDSSNEDDDYRSTKYVVRRRTSHLPATSTSSSNAEPSTSSNTTRTRSSASPRLK 194
S R S++ R ++R+S+ S + N + +S R+ K
Sbjct: 34 SCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTS----LRTVMELPQK 89
Query: 195 TPDKPSKADVDFILQVK--DAKKTRRKENLETDTESLAGTETTD------TTETTLVNDN 246
+ + + + + A ++ N + D E L+ + D E ++ N
Sbjct: 90 STSSDDDHNRASMQRDEAIAAIDNEQQTNSK-DGEQLSDFQLEDLVGMIQNAEKNILLLN 148
Query: 247 EYS----DQIDLLRHELDNMKAKCEKLEREKSDILLR-RLASMETTTSKTTASELLKLQQ 301
+ + ++ + E + ++ K LE S+ R +LA+ E + +L KL+
Sbjct: 149 QARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLR- 207
Query: 302 RVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEEL 361
NEL SLS + L+ E K + + L+ +L E +
Sbjct: 208 --NELLIRGATEGLCVHSLSKELDVLKEENMLLKD------DIQFLKAELIEVAETEERV 259
Query: 362 MDENEEMKKELRYLEEEMDEMQDHFREDQAD--EYSSLKKELEQTAKNCRILSFKLRKSE 419
+++KE L+ + E++ F Q D + S L+ + K E
Sbjct: 260 F----KLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC------------WWEKVE 303
Query: 420 RRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEK---LQKDLKEA 476
+ L+ + EK + + +KV++++A KE ++ ++ K LQ+ LK
Sbjct: 304 NLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLL 363
Query: 477 TDKLERAN 484
++L+ ++
Sbjct: 364 EERLQASD 371
>gnl|CDD|220640 pfam10234, Cluap1, Clusterin-associated protein-1. This protein is
conserved from worms to humans. The protein of 413 amino
acids contains a central coiled-coil domain, possibly
the region that binds to clusterin. Cluap1 expression is
highest in the nucleus and gradually increases during
late S to G2/M phases of the cell cycle and returns to
the basal level in the G0/G1 phases. In addition, it is
upregulated in colon cancer tissues compared to
corresponding non-cancerous mucosa. It thus plays a
crucial role in the life of the cell.
Length = 269
Score = 35.0 bits (81), Expect = 0.21
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 647 SSKITQLEASIREERERATDLSVKAGSAASRELNQ------LREELTQLKKEAQRNAEKV 700
+S+IT+ A++ + + DL A SR L L+E + L Q+ ++
Sbjct: 128 ASEITERGAALYDLLGKELDLRESRQKALSRPLELAEVEKALKEAIKNLAARLQQLQAEL 187
Query: 701 TKLERDKTSLEENLKSKETQMTKTISDLQT 730
L+ D+ +LE ++ K+ ++ +T LQ
Sbjct: 188 DNLKSDEANLEAKIERKKQELERTQKRLQA 217
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 33.7 bits (78), Expect = 0.22
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 701 TKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEI 760
+LE++ + L+ E ++ K LQ +L+ ++K KEKEL+ K E
Sbjct: 21 KQLEKEFKKRQAELEKLEKELQKLKEKLQKD----AATLSEAAREK--KEKELQKKVQEF 74
Query: 761 NVLKNQSSDNVTKQITELKTQYEQEIKK 788
+ + ++ K+ E + +I K
Sbjct: 75 QRKQQKLQQDLQKRQQEELQKILDKINK 102
Score = 29.9 bits (68), Expect = 3.6
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 632 LEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKK 691
LE E KK + ++ + ++ +L+ + +++ AT LS A +EL + +E + ++
Sbjct: 23 LEKEFKKRQAELEKLEKELQKLKEKL--QKDAAT-LSEAAREKKEKELQKKVQEFQRKQQ 79
Query: 692 EAQRNAEK 699
+ Q++ +K
Sbjct: 80 KLQQDLQK 87
>gnl|CDD|233459 TIGR01541, tape_meas_lam_C, phage tail tape measure protein, lambda
family. This model represents a relatively
well-conserved region near the C-terminus of the tape
measure protein of a lambda and related phage. This
protein, which controls phage tail length, is typically
about 1000 residues in length. Both low-complexity
sequence and insertion/deletion events appear common in
this family. Mutational studies suggest a ruler or
template role in the determination of phage tail length.
Similar behavior is attributed to proteins from
distantly related or unrelated families in other phage
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 332
Score = 34.8 bits (80), Expect = 0.26
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 18/120 (15%)
Query: 295 ELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKS-NAAEREAEALRTKLAA 353
+LL L Q++ + K + LN + + +K AER+A KLA
Sbjct: 2 QLLLLTQQIADRKLK--KLNTADEKSLQSRSDEIIALIKLEKLLEEAERKALEALKKLAE 59
Query: 354 AEGLCEELMDENEEMKKEL-------RYLEE--EMDEMQDHFREDQADEYSSLKKELEQT 404
A + K++L + E ++ FR+ Q D ++ +
Sbjct: 60 ATA------SIRAQNKRQLDRFGLGDKQRERLDARLQIDRTFRKQQRDLNKAMTAKGLAG 113
>gnl|CDD|220745 pfam10422, LRS4, Monopolin complex subunit LRS4. Monopolin is a
protein complex, originally identified in Saccharomyces
cerevisiae, that is required for the segregation of
homologous centromeres to opposite poles of a dividing
cell during meiosis I. The orthologous complex in
Schizosaccharomyces pombe is not required for meiosis I
chromosome segregation, but is proposed to play a
similar physiological role in clamping microtubule
binding sites. In S.cerevisiae this subunit is called
LRS4, and in S. pombe it is known as Mde4.
Length = 211
Score = 34.2 bits (78), Expect = 0.27
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 697 AEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTK 756
A K + D L + S + Q+ + SDLQ + EK + QKAL E +L +K
Sbjct: 31 ALKTNATQSDGEKLTDETLSLQRQINQLNSDLQLQKQENEKLRKLNKTQKALLESKLSSK 90
Query: 757 ESEINVLKNQSSDNVTKQITELKTQYEQEI 786
+ E++ K +++ + + K ++
Sbjct: 91 KKEVDRFKEETNSSSRSGVRTPKLGTQERQ 120
>gnl|CDD|147082 pfam04740, LXG, LXG domain of WXG superfamily. This domain is
present is the N-terminal region of a group of
polymorphic toxin proteins in bacteria. It is predicted
to use Type VII secretion pathway to mediate export of
bacterial toxins.
Length = 204
Score = 34.1 bits (79), Expect = 0.28
Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 14/125 (11%)
Query: 616 TQITGELESLKSKLSALE-AEKKKFETDILEK---------SSKITQLEASIREERERAT 665
+ LE +KS LS +E + + + LE K +L+ +I +
Sbjct: 71 DEYIEFLEKIKSFLSDVESSSNGYIDEEFLEHELKNGLKKAEEKTEELKDAINSILASIS 130
Query: 666 DLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTI 725
D+ + +E+L + KK+ EK+ + +++ T+ L++ ++ + +
Sbjct: 131 DIV----HLPKFSTSAFQEQLDKAKKKRNDTLEKLYEFDQELTNELAELEALIQEIQQYV 186
Query: 726 SDLQT 730
LQ+
Sbjct: 187 RQLQS 191
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR). This
family consists of several mammalian alpha helical
coiled-coil rod HCR proteins. The function of HCR is
unknown but it has been implicated in psoriasis in
humans and is thought to affect keratinocyte
proliferation.
Length = 739
Score = 35.0 bits (80), Expect = 0.28
Identities = 25/120 (20%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 677 RELNQLREELTQLKKEAQRNAEKVTKLERDKT-SLEENLKSKETQMTKTISDLQTKCSTL 735
EL + + + L+ E R + R+K +L LK++E + LQ + + L
Sbjct: 284 EELTRKAQPVDILEPEFARKCRSLLSRWREKVFALMVQLKAQELSHADSTCQLQKQVAEL 343
Query: 736 EKSLTAEQKQKALKEKELKTKESEINV--LKNQSSDNVTKQITELKTQYEQEIKKLEDTL 793
++ +T++ +++A+ ++ L+ KE+E+ V + ++ + E + + +Q++ E+ L
Sbjct: 344 QEEVTSQSQEQAILQRSLQDKEAEVEVERMNSKVLQGELSRAQEARRRLQQQVASAEEQL 403
Score = 30.4 bits (68), Expect = 8.1
Identities = 44/196 (22%), Positives = 91/196 (46%), Gaps = 12/196 (6%)
Query: 628 KLSALEAEKKKFETDILEKSSKI----TQLEASIREERE-RATDLSVKAGSAASRELNQL 682
+L LE E + L++ ++ +LEA E+ RA ++A A + E+ +
Sbjct: 74 ELRRLEEEVRSLRETSLQQKMRLEAQAEELEALAVAEKAGRAEAEGLRAALAGAEEVRKN 133
Query: 683 REELTQLKKEAQR--NAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLT 740
EE Q + E + + E+++ L + +L+SK + K++ L+T+ + K+L
Sbjct: 134 LEEGGQQELEEAQRLHQEQLSSLTQAHLEALSSLRSKAEGLEKSLQSLETRRAGEAKALA 193
Query: 741 AEQKQKALKEKELKTKESEINV---LKNQSSDNVTKQI-TELKTQ-YEQEIKKLEDTLVQ 795
A Q + ++L + E+ L Q V +Q+ E ++Q +E E +L T+
Sbjct: 194 AAQAEADTLREQLSKTQEELEAQVTLVEQLRKYVGEQVVAESRSQAWELERGELLQTVKH 253
Query: 796 ERQEYEDLTNRYDILE 811
+++ L ++L+
Sbjct: 254 LQEDRAALQATVELLQ 269
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 34.6 bits (79), Expect = 0.37
Identities = 30/207 (14%), Positives = 77/207 (37%), Gaps = 11/207 (5%)
Query: 603 QIEKVRAE---SSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIRE 659
Q+ +R E + EK E E+ +S+L E++ ++ + + + +
Sbjct: 82 QLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELAR 141
Query: 660 ERERATDLSVKAG--SAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSK 717
++A DL + + R+L + L +K+ Q +A ++ K + L ++
Sbjct: 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQL-KSQVLDLKLRS---AQ 197
Query: 718 ETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSS--DNVTKQI 775
Q + ++ + L + ++ ++++I+ Q + ++
Sbjct: 198 IEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRER 257
Query: 776 TELKTQYEQEIKKLEDTLVQERQEYED 802
+ E +LE + Q Y+
Sbjct: 258 ERQLQRLETAQARLEQEVAQLEAYYQA 284
Score = 31.5 bits (71), Expect = 3.0
Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 9/137 (6%)
Query: 345 EALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQT 404
ALRT+L A+G E E + EL+ +E + ++ + + ++EL +
Sbjct: 84 RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAAR-QNLAKAQQELARL 142
Query: 405 AKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVN--------KVERIQALE 456
K + L +L+ + QLEA+ + +++ + + +I+
Sbjct: 143 TKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEA 202
Query: 457 KELKLANETAEKLQKDL 473
+ L A+ ++L
Sbjct: 203 QNLATRANAAQARTEEL 219
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 34.9 bits (80), Expect = 0.37
Identities = 93/530 (17%), Positives = 190/530 (35%), Gaps = 73/530 (13%)
Query: 329 TEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFRE 388
T A + + E R +L ++ +L ENE M+KEL + +
Sbjct: 41 TSALSSLQKQVEESMTLLQRAELIRSKSKLIQL--ENELMQKELEHKRA---------QI 89
Query: 389 DQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNK 448
+ + S+L + E+ L +L+ E ++ E E EAE
Sbjct: 90 ELERKASTLAENYERELDRNLELEVRLKALEELEKKAENEAAEAE--------------- 134
Query: 449 VERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPP--KLGALPKTPSVETAEKL 506
E + L+ +L + + ++D + + + A ++ E
Sbjct: 135 -EEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCRAQNADTELKLLESE 193
Query: 507 QKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSME 566
++L+E ++ ++ + EK + + S D +V ++ L++ ++
Sbjct: 194 LEELREQLEECQK-------------ELAEAEKKLQSLTSEQASSADNSVKIKHLEEELK 240
Query: 567 READLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLK 626
R E ++ +E+ Q A + L+ K E E ELE L+
Sbjct: 241 RYEQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDNELLKE------ELEDLQ 294
Query: 627 SKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREEL 686
S+L E ++K LEK +L + + L+++ SR + L+ E
Sbjct: 295 SRLERFEKMREKLADLELEKEKLENEL--KSWKSLLQDIGLNLRTPDDLSRRIVVLQNEE 352
Query: 687 TQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQK 746
QLK++ + +LE L+ + + I +L+ K L+ + Q++
Sbjct: 353 LQLKEKNGSISSSAKQLETTLQQLQLERQ----KAVSEILELKKKLEALKALVRRLQRRL 408
Query: 747 ALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEY------ 800
L KE ++ +L + + T + Q + +++ ED LVQ+ Q +
Sbjct: 409 TLVTKE---RDGLRAILNSYDKELT---ETSVSGQLMKRLEEAED-LVQKVQSHLAKMEN 461
Query: 801 ------EDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKR 844
ED+ + D +IK + N + + +
Sbjct: 462 QLSELEEDVGQQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATNALRLK 511
Score = 32.6 bits (74), Expect = 1.6
Identities = 97/571 (16%), Positives = 218/571 (38%), Gaps = 39/571 (6%)
Query: 247 EYSDQIDLLRHELDNMKA--KCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVN 304
++ L +EL + K ++E E+ L E + L L++
Sbjct: 65 RSKSKLIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEK 124
Query: 305 ELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDE 364
+ + E + +E K L + + +A + K N E + + + ++ + E+
Sbjct: 125 KAENEAAEAEEEAKLL-----KDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCR 179
Query: 365 NEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKK--ELEQTAKNCRILSFKLRKSERRS 422
+ EL+ LE E++E+++ E Q + + KK L + S K++ E
Sbjct: 180 AQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEEL 239
Query: 423 EQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLER 482
++ E + + ++ E ++ ++ ++L+ E E L+++L++ +LER
Sbjct: 240 KRYEQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDNELLKEELEDLQSRLER 299
Query: 483 ANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSR 542
+ + +E K K L + R ++ L K
Sbjct: 300 FEKMREKLADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKN 359
Query: 543 ETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYL 602
+++ Q + T ++ LQ ER+ + E L +++ + L ++ R +
Sbjct: 360 GSISSSAKQLETT--LQQLQL--ERQKAVSEILE--LKKKLEALKALVRRLQRRLTLVTK 413
Query: 603 QIEKVRA--ESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREE 660
+ + +RA S ++ T L +L E +K ++ + + +++++LE + ++
Sbjct: 414 ERDGLRAILNSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHLAKMENQLSELEEDVGQQ 473
Query: 661 RERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQ 720
++R L + + ++ R L+ +K+ K+ LER++ L + E +
Sbjct: 474 KDRNNTLETEIKLLKEQLVSNERL-LSFVKEATNALRLKIETLERERDRLRQEKSLLEMK 532
Query: 721 MTK---------------------TISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESE 759
+ Q T+E +K K + + K
Sbjct: 533 LEHLCLQGDYNASRTKVLHMSLNPASEAEQIAKQTIEALQAECEKLKERLQALEEGKSQP 592
Query: 760 INVLKNQSSDNVTKQITELKTQYEQEIKKLE 790
++ K S +K+I +LK Q E KK +
Sbjct: 593 GDLEKAVGSHISSKEIAQLKKQVESAEKKNQ 623
>gnl|CDD|184458 PRK14021, PRK14021, bifunctional shikimate kinase/3-dehydroquinate
synthase; Provisional.
Length = 542
Score = 34.5 bits (79), Expect = 0.39
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 23/157 (14%)
Query: 434 KKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGA 493
++ + V GM G K ++ E A+ ++ +A ++ER G P
Sbjct: 5 RRPQAVIIGMMGAGKT----------RVGKEVAQMMRLPFADADVEIEREIGMSIPSYFE 54
Query: 494 LPKTPSVETAEK-LQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQE 552
P+ E + D+ E D + GG P TPS + + GG
Sbjct: 55 EYGEPAFREVEADVVADMLEDFDGIFSLGGGAP-------MTPSTQHALASYIAHGGRV- 106
Query: 553 DPTVLMRDLQDSMER--EADLREQLRFAEEERYQRLY 587
L D +++MER R L +R+++L+
Sbjct: 107 --VYLDADPKEAMERANRGGGRPMLNGDANKRWKKLF 141
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 34.6 bits (79), Expect = 0.40
Identities = 28/141 (19%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Query: 616 TQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAA 675
T + +LE + + + L + E D+ + S+I QLE ++R E+ +L + A
Sbjct: 139 TILQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQ 198
Query: 676 SRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTL 735
S + E L + N +++ +LE+D +L + + + + T D++ + +
Sbjct: 199 SSS-ESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQ-DIEAELERM 256
Query: 736 EKSLTAEQKQKALKEKELKTK 756
+ L K+ ++ ++ +T+
Sbjct: 257 KGELKQRLKKMTIQRRDEETE 277
Score = 31.1 bits (70), Expect = 5.1
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 612 STEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKA 671
+ E+ + E+ K ++ L AE K E + E+ S+ +LE + E D +
Sbjct: 356 AQERETLRQSAEADKDRIQKLSAELLKLEEWLQEERSQREKLEVELGIE----KDCNRVQ 411
Query: 672 GSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENL 714
S REL++LR L L+KE ++ E+ +L LE L
Sbjct: 412 LSENRRELSELRSALRVLQKEKEQLQEEKQELLDYIRVLELRL 454
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 34.7 bits (80), Expect = 0.40
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 695 RNAEKVTKLERDKTSLEENLKSKET--QMTKTISDLQTKCSTLEKSLTAEQKQ-KALKEK 751
R E VT + E+ K KE + T ++L K + A QK+ ++LK K
Sbjct: 689 RRIEAVTGNAAIEYLNEQEDKLKELADILKVTPNELPKKIERFFEEWKALQKELESLKLK 748
Query: 752 ELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQE 799
K E+ K ++ + V + + + + +K + D L +
Sbjct: 749 IADQKIDEL-KDKAETINGVKVLVEVVDAKDMKSLKTMADRLKSKLGS 795
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 33.4 bits (77), Expect = 0.41
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 747 ALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNR 806
+ + L ++ + LK + + + ++I EL+ Q E+ K E+T +E +L
Sbjct: 58 SFPSQALNKLKTRLEKLKKELEE-LKQRIAELQAQIEKLKKGREET-----EERTELLEE 111
Query: 807 YDILEGEHVDIKASLVKEKENNHGRLQQTQKG 838
LE E +KA L K ++N+ R+++ ++
Sbjct: 112 LKQLEKELKKLKAELEKYEKNDPERIEKLKEE 143
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 34.2 bits (79), Expect = 0.42
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 684 EELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQ 743
EE +L+ + + K K E L+E L SKE + + I + EK++ AE+
Sbjct: 155 EERDKLEAKYNQVPRKGVKAE---EVLQEFLNSKEA-VEEAILQTDQALTAKEKAIEAER 210
Query: 744 KQKALKEKELKTKESE-------INVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQE 796
+ E E + + + + ++V + I +++ + E+ + + E L +
Sbjct: 211 AKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHK 270
Query: 797 RQEYEDL 803
QE E+L
Sbjct: 271 LQEQEEL 277
Score = 32.3 bits (74), Expect = 1.6
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 299 LQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLC 358
LQ+ +N + E + ++L+ + + +E E A K+ AAE E E LR K E +
Sbjct: 178 LQEFLNSKEAVEEAILQTDQALTAKEKAIEAERA---KAEAAEAEQELLREKQKEEEQMM 234
Query: 359 EELMDENEE--------MKKELRYLEEEMDEMQDHFREDQAD--------EYSSLKKELE 402
E +E M+ E L E + M +H ++Q + E SL+KE++
Sbjct: 235 EAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEELLKEGFKTEAESLQKEIQ 294
Query: 403 Q 403
Sbjct: 295 D 295
Score = 31.1 bits (71), Expect = 3.4
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 324 VRELETEAAAFKKSN----AAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEM 379
+ E A +++ A E+ EA R K AAE E L E+ K+E + +E +
Sbjct: 182 LNSKEAVEEAILQTDQALTAKEKAIEAERAKAEAAEAEQELLR---EKQKEEEQMMEAQE 238
Query: 380 DEMQDHFREDQADEYSSLKKELEQ-TAKNCRILSFKLRKSERRSE---QLEAEKLEAE 433
Q+H ++ ++ E E+ A+ R+L KL++ E + + EAE L+ E
Sbjct: 239 RSYQEHVKQLI----EKMEAEREKLLAEQERMLEHKLQEQEELLKEGFKTEAESLQKE 292
>gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are about 260 amino acids in
length.
Length = 250
Score = 33.7 bits (78), Expect = 0.43
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 671 AGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQT 730
A +AA+ L+Q Q A ++ +K+ K L ++ Q+ K I +L+
Sbjct: 16 AAAAAAASLDQALAAAQQTVAAAAQSQKKIDKWADQTQELLAEIR----QLLKEIENLRV 71
Query: 731 KCSTLEKSLTAEQKQKA 747
L++ + +Q++ A
Sbjct: 72 YNDQLQRLVANQQQEIA 88
>gnl|CDD|205044 pfam12725, DUF3810, Protein of unknown function (DUF3810). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 333 and 377 amino
acids in length. There is a conserved HEXXH sequence
motif that is characteristic of metallopeptidases. This
family may therefore belong to an as yet uncharacterized
family of peptidase enzymes.
Length = 317
Score = 34.1 bits (79), Expect = 0.44
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 765 NQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASL 821
N+ +T+ + +++ + + YE L+ +Y L + K SL
Sbjct: 111 NELRLQLTE-DDSGVVKLPYSKEEIFK---EAVKGYEKLSEKYPFLSYYYPSPKPSL 163
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 33.8 bits (77), Expect = 0.53
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 117 TSSTNLSSVSSSNDSQNSSRRPPPEDSSNEDDDYRSTKYVVRRRTSHLPATSTSSSNAEP 176
SST LSS+ S+ + + + E S +E ST + +P + + S N+
Sbjct: 3 NSSTTLSSIILSSSTLSPTTFFTIETSMDESKSIIST--FTEIIPTEIPTSESPSPNSNS 60
Query: 177 STSSNTTRT 185
S+SS+++ +
Sbjct: 61 SSSSSSSSS 69
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 34.0 bits (78), Expect = 0.54
Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 21/193 (10%)
Query: 34 DYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRDYKEHGNRNRDNDLRKDDFTVSSP 93
+ N+DN+ +K SS S S+ YK N + L K+ + +
Sbjct: 62 KADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFI---YKNLPQTNINQLLTKNKYDDNYS 118
Query: 94 SLSSWTSASTIRESEKKNEGRSWTSSTNLSSVSSSNDSQN--SSRRPPPEDSSNEDDDY- 150
+ + + E S S+++ ++N SS + + S++ D
Sbjct: 119 LTTLIQNLFNLNSDISDYE------QPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKAD 172
Query: 151 -------RSTKYVVRRRTSHLPATSTSSSNAEPSTSSNTTRTRSSASPRLKTPDKPSKAD 203
+TK + + P + + + S +T +SS+ D +
Sbjct: 173 NQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSI 232
Query: 204 VDFILQVKDAKKT 216
+D + DAKKT
Sbjct: 233 LDQYSE--DAKKT 243
Score = 30.9 bits (70), Expect = 5.0
Identities = 25/203 (12%), Positives = 61/203 (30%), Gaps = 41/203 (20%)
Query: 89 TVSSPSLSSWTSASTIRESEKKNEGRSWTSSTNLSSVSSSNDSQNSSRRPPPEDSSNEDD 148
T + ++A T KK+ + T+ ++++ S++ + S D
Sbjct: 24 TAYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDS 83
Query: 149 -----------------------DYRSTKYVVRRRTSHL----------------PATST 169
KY + L P S
Sbjct: 84 STSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSE 143
Query: 170 SSSNAEPSTSSNTTR--TRSSASPRLKTPDKPSKADVDFILQVKDAKKTRRKENLETDTE 227
S+N S ++ + T + +S + K ++ + + + + + K +
Sbjct: 144 KSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSN 203
Query: 228 SLAGTETTDTTETTLVNDNEYSD 250
S ++ T +++ ++ SD
Sbjct: 204 SQPASDDTANQKSSSKDNQSMSD 226
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 33.9 bits (78), Expect = 0.55
Identities = 27/145 (18%), Positives = 59/145 (40%), Gaps = 21/145 (14%)
Query: 602 LQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEK-----SSKITQLEAS 656
L + ++ E+ K ++ LE ++ L A+ K E ++ ++I+QL+
Sbjct: 27 LDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEE 86
Query: 657 IREERERATDLSVKAGSAASRELNQLREELTQLKKEAQ-RNAEKVTKLERDKTSLEENLK 715
I ++RER + +L+ L Q + + + + + L++ +K
Sbjct: 87 IEQKRER---------------IEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIK 131
Query: 716 SKETQMTKTISDLQTKCSTLEKSLT 740
+++ S L K S L + L
Sbjct: 132 RTRSKLNALHSLLAEKRSFLCRELA 156
Score = 32.0 bits (73), Expect = 1.8
Identities = 23/139 (16%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Query: 1122 LKDRITGIFKKSGSTSRANSVDDLKAVITSLEQQISCMEDELSESRLETSRLKTELVSEK 1181
LK ++ + + + + D LK + +++++ + +S+ + E + + + K
Sbjct: 39 LKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELK 98
Query: 1182 SAAEIKLSELTSKVNELEEDRL-LSSGRTNKIPGLKTRMELAWHKEREEQQRLLQETSTL 1240
A + S+L+S +LE+ R ++I ++++ E++ L +E + L
Sbjct: 99 RALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTRSKLNALHSLLAEKRSFLCRELAKL 158
Query: 1241 ARDLRQTLFEVERERDKER 1259
LR+ + + + E
Sbjct: 159 FP-LRRVIRGRKGDSSSEP 176
>gnl|CDD|145900 pfam02994, Transposase_22, L1 transposable element.
Length = 370
Score = 33.9 bits (77), Expect = 0.58
Identities = 26/133 (19%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 255 LRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLN 314
LR +++ + + +E + + +++ + T K EL++L+++ ELK E +
Sbjct: 60 LREDIETKGKEVQNFLKELEECITKQVEAHIENTEKCL-KELMELKKKARELKEECRSIK 118
Query: 315 DEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRY 374
E +L + + S + + +++ AE EE+ + +K +
Sbjct: 119 KEHMETTLDIENQKKRQGVVDTSFTNR--IQEMEERISGAEDSIEEIKRTGKFNEKRKKR 176
Query: 375 LEEEMDEMQDHFR 387
LE+ + E+QD+ R
Sbjct: 177 LEQNIQEIQDYVR 189
>gnl|CDD|215556 PLN03064, PLN03064, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 934
Score = 34.0 bits (78), Expect = 0.64
Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 9/121 (7%)
Query: 83 LRKDD--FTVSSPSLSSWTSA--STIRESEKKNEGRSWTSSTNLSSVSSSNDSQNSSRRP 138
L KD+ +T P L S + A + K+ G S SS S+S +SQ +R
Sbjct: 800 LGKDEDIYTFFEPELPSDSPAIARSRSPDGLKSSGDRRPSGKLPSSRSNSKNSQGKKQRS 859
Query: 139 --PPEDSSNEDDDYRSTKYVVRRRTSHLPATSTSSSNAEPSTSSNTTRTRSSASPRLKTP 196
S + RR + S E S R RS+A L +
Sbjct: 860 LLSSAKSGVNHAASHGS---DRRPSPEKIGWSVLDLKGENYFSCAVGRKRSNARYLLGSS 916
Query: 197 D 197
D
Sbjct: 917 D 917
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 33.7 bits (78), Expect = 0.69
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 25/118 (21%)
Query: 267 EKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRE 326
KL RE D + +L + +LL+L + +L E E+L E+ LS
Sbjct: 4 LKLIRENPDAVREKLK--KRGGDALDVDKLLELDEERRKLLRELEELQAERNELS----- 56
Query: 327 LETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQD 384
+ + L E EEL+ E +E+K++L+ LE +DE++
Sbjct: 57 ------------------KEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEA 96
>gnl|CDD|218174 pfam04612, T2SM, Type II secretion system (T2SS), protein M. This
family of membrane proteins consists of Type II
secretion system protein M sequences from several
Gram-negative (diderm) bacteria. The precise function of
these proteins is unknown, though in Vibrio cholerae,
the T2SM (EpsM) protein interacts with the T2SL (EpsL)
protein, and also forms homodimers.
Length = 159
Score = 32.2 bits (74), Expect = 0.74
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 855 EPSVAKEEHSKSY--QLQTTLQRLTEVAAELKRASQLPPTPPTTEESQNRIRRAAFAAK 911
+P + ++ + L L E A E++ P + + R+A A
Sbjct: 37 QPLSQRRARAQRRLQAARQLLAWLQEQAPEIRALRGAGAPPLSGGSLAQVVNRSARRAG 95
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 33.8 bits (77), Expect = 0.76
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 23/164 (14%)
Query: 25 PTRCKRCFRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSAST--IRDYKEHGNRNRDND 82
P C R Y E + D +D T ++ +++W+ A + DY D
Sbjct: 381 PPARTDC-RRYSEGSVIHESVDSHIEDVTEATSVVAAWSDAFSDISEDYSHLTRP----D 435
Query: 83 LRKDDFTVSSPSLSSWTSASTIRESEKKNEGR-SWTSSTNLSSVSSSNDSQNSSRRPPPE 141
L VS + + + + + R SWT ++ +VSS + + SR+P
Sbjct: 436 LPATAHDVSKNGHDTKSDRRSRGSNSRHKRRRPSWTPPSSSENVSSDGPTFSQSRKPS-- 493
Query: 142 DSSNEDDDYRSTKYVVRRRTSHLPATSTSS----SNAEPSTSSN 181
R +K + HL + S++ SN
Sbjct: 494 ---------RKSKRALDLDYGHLSNEPSDVDGENSDSPAGAISN 528
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 33.6 bits (77), Expect = 0.79
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 286 TTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAE 345
TT + TA+++ Q++ E++ E + LN ++ R+ +L + AA + + +
Sbjct: 71 TTEMQVTAAQM---QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAE------QVK 121
Query: 346 ALRTKLAAAEG 356
AL A G
Sbjct: 122 ALGANPVTATG 132
Score = 31.3 bits (71), Expect = 3.5
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 719 TQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQ 766
T+M T + +Q + + + L KQ+ ++ ++ + L Q
Sbjct: 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
This model describes a conserved domain found in surface
proteins of a number of Firmutes. Many members have
LPXTG C-terminal anchoring motifs and a substantial
number have the KxYKxGKxW putative sorting signal at the
N-terminus. The tetracycline resistance plasmid pCF10 in
Enterococcus faecalis promotes conjugal plasmid transfer
in response to sex pheromones, but PgrA/Sec10 encoded by
that plasmid, a member of this family, specifically
inhibits the ability of cells to receive homologous
plasmids. The phenomenon is called surface exclusion.
Length = 356
Score = 33.2 bits (76), Expect = 0.82
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 701 TKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEI 760
T + SL+ + T ++ QT +T + +LT Q A + L T + E+
Sbjct: 247 TPIPNTPNSLKALQAALATAQAD-LAAAQTALNTAQAALTTAQTAYAAAQAALATAQKEL 305
Query: 761 NVLKNQSSDNVTKQITELKTQYEQ 784
+ Q+ + +
Sbjct: 306 ANAQAQALQTAQNNLATAQAALAN 329
Score = 32.8 bits (75), Expect = 1.1
Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 16/150 (10%)
Query: 588 SVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKS 647
+ H I T L++L++ L+ +A+ +T +
Sbjct: 222 NDGGVNIHFVNFNDSYIADGNKFDKTPIPNTPNSLKALQAALATAQADLAAAQTALNTAQ 281
Query: 648 SKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEK-VTKLERD 706
+ +T + + +AA L ++EL + +A + A+ + +
Sbjct: 282 AALTTAQTAY---------------AAAQAALATAQKELANAQAQALQTAQNNLATAQAA 326
Query: 707 KTSLEENLKSKETQMTKTISDLQTKCSTLE 736
+ E L + + +DL K + L+
Sbjct: 327 LANAEARLAKAKEALANLNADLAKKQAALD 356
>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein.
Length = 326
Score = 33.4 bits (76), Expect = 0.84
Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 9/128 (7%)
Query: 620 GELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGS------ 673
G+L + +L+ LE+ + SS+++ L A +++ D
Sbjct: 28 GDLTPIYERLTNLESATASLSESVSTISSRLSDLSADLQDMTTSLDDAKATLNGLITTVQ 87
Query: 674 AASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLE---ENLKSKETQMTKTISDLQT 730
A ++ L EL L + ++ L+ + NLKS + I+DL+
Sbjct: 88 ALQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHANSTDISNLKSSVSANGLNITDLEQ 147
Query: 731 KCSTLEKS 738
+ +LE
Sbjct: 148 RVKSLESG 155
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 33.4 bits (77), Expect = 0.91
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 303 VNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELM 362
+ L+ + + L + L + L ++ E+E E L+ KLAAAE + L
Sbjct: 707 LEYLQEQEDLLKEIASLLKVPPELLPKVERLLEELKELEKELERLKKKLAAAELA-DLLS 765
Query: 363 DENEEMKKELRYLEEEMDEM-QDHFREDQADEYSSLKKELE 402
+ E ++ L +E+D RE AD+ LKK+L
Sbjct: 766 NAKAEEIGGVKVLAKEVDGADMKELRE-IADD---LKKKLG 802
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 33.6 bits (77), Expect = 0.91
Identities = 53/283 (18%), Positives = 100/283 (35%), Gaps = 27/283 (9%)
Query: 208 LQVKDAKKTRRKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCE 267
Q K+ + +R + L+ E L + + L + + ++ LR N A
Sbjct: 180 RQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAALR 239
Query: 268 KLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVREL 327
+ LL L + + L +L ++V TE E+ E ++ EL
Sbjct: 240 GDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYL---DEL 296
Query: 328 ETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFR 387
E + +LA + L + EE+ + ++EE+D++ D
Sbjct: 297 E----------FDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDD-SD 345
Query: 388 EDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVN 447
E + K E+ K LS RK+ AE+L + V ++ +
Sbjct: 346 ESLEALEEEVDKLEEELDKAAVALSLIRRKA--------AERLA-----KRVEQELKALA 392
Query: 448 KVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPK 490
+ +E + L + + + + L AN G+P K
Sbjct: 393 MEKAEFTVEIKTSLPSGAKARAGAYGADQVEFLFSANTGEPVK 435
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 33.3 bits (77), Expect = 0.92
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 359 EELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQ 403
EL ++ +++ +LR LE E ++++ E LK ELE+
Sbjct: 11 SELEEQIRQLELKLRDLEAENEKLE--------RELERLKSELEK 47
Score = 29.8 bits (68), Expect = 9.0
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKS 337
+L++++ +L+ + DL E + L + L++E K
Sbjct: 8 ERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSP 51
Score = 29.8 bits (68), Expect = 9.1
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAA 353
L L++R +EL+ + L + + L +LE E K E E L++
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLK------SELEKLKS-PPL 53
Query: 354 AEGLCEELMDENE 366
E++D+
Sbjct: 54 IVATVLEVLDDGR 66
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 33.4 bits (76), Expect = 0.93
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 35/213 (16%)
Query: 600 QYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFE--TDILEKSSKITQLEASI 657
L EK AE E Q+ A+E + E D+ EK ++ I
Sbjct: 1086 HELDTEKRCAEELKEAMQM------------AMEGHARMLEQYADLEEKHIQLLARHRRI 1133
Query: 658 REERERATDLSVKAG--SAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLK 715
+E + + +AG A S+ +N L E++ LK E E+++ L + K
Sbjct: 1134 QEGIDDVKKAAARAGVRGAESKFINALAAEISALKVER----------EKERRYLRDENK 1183
Query: 716 SKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQI 775
S + Q+ T +Q L + AE+ AL + + ++E Q + KQI
Sbjct: 1184 SLQAQLRDTAEAVQAAGELLVRLKEAEE---ALTVAQKRAMDAE------QEAAEAYKQI 1234
Query: 776 TELKTQYEQEIKKLEDTLVQERQEYEDLTNRYD 808
+LK ++E EI L + + R E + +
Sbjct: 1235 DKLKRKHENEISTLNQLVAESRLPKEAIRPACN 1267
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 33.3 bits (76), Expect = 0.99
Identities = 86/544 (15%), Positives = 208/544 (38%), Gaps = 51/544 (9%)
Query: 298 KLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGL 357
KL+ EL+ + + D++KS S+ ++E+E + + N A + L++ L L
Sbjct: 191 KLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEY---NNAMDDYNNLKSALNELSSL 247
Query: 358 CEELMDENEEMKK-------------ELRYLEEEMDEMQD---HFREDQADEYSSLKKEL 401
+ E+K + LEE ++ + + + ++Y K ++
Sbjct: 248 EDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDI 307
Query: 402 EQTAKNCRILSFKLRKSE---RRSEQLEAEKLEAEKKCREVCGGMEGVNK-VERIQALEK 457
E + + ++ K ++ L+ + + KK + +N + ++ E
Sbjct: 308 ENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSR----YDDLNNQILELEGYEM 363
Query: 458 ELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAE--KLQKDLKEATD 515
+ ++ E L+K ++E + +ER + L P E ++ L++ +
Sbjct: 364 DYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS 423
Query: 516 KLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQL 575
K+ N ++ AL + +++++SR G P V L + E+ +
Sbjct: 424 KVSSLNQ----RIRALRE--NLDELSRNMEMLNGQSVCP-VCGTTLGE--EKSNHIINHY 474
Query: 576 RFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAE 635
+ +++ + + + ++ + + E +I + + +K+ + A+
Sbjct: 475 NEKKSRLEEKIREIEIEV---KDIDEKIVDLKKRKEYLESEEIN-KSINEYNKIESARAD 530
Query: 636 KKKFETDILEKSSKITQLEASIREERE-RATDLSVKAGSAASRELNQLREELTQLKKEAQ 694
+ + I E K + E + + DL K S + ++ + +
Sbjct: 531 LEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSN 590
Query: 695 RNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEK--- 751
+++ LE +E ++ + K+I +++ + + L Q+ K L EK
Sbjct: 591 EIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRG 650
Query: 752 ---ELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLV-QERQEYEDLTNRY 807
K + +EI+ + +T +I +++ ++ K L+D + R E R
Sbjct: 651 KIDNYKKQIAEIDSII-PDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRT 709
Query: 808 DILE 811
I E
Sbjct: 710 RINE 713
Score = 33.3 bits (76), Expect = 1.0
Identities = 50/275 (18%), Positives = 93/275 (33%), Gaps = 37/275 (13%)
Query: 563 DSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGEL 622
D +R+ L E L ER D + +E+ S+ E I ++
Sbjct: 147 DPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQI 206
Query: 623 ESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQL 682
+ S E ++ + L++++ E S+ N+
Sbjct: 207 ADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNEL------------SSLEDMKNRY 254
Query: 683 REELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAE 742
E+ + + EK K E + K I+D K
Sbjct: 255 ESEIKTAESDLSMELEKNNY-----------YKELEERHMKIINDPVYKNRNYINDYFKY 303
Query: 743 QKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYED 802
+ K++ L ++EIN + K+++ L+ Y IKK + Y+D
Sbjct: 304 KNDIENKKQILSNIDAEIN-----KYHAIIKKLSVLQKDYNDYIKK--------KSRYDD 350
Query: 803 LTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQK 837
L N+ LEG +D S +K E+ ++++ K
Sbjct: 351 LNNQILELEGYEMDYN-SYLKSIESLKKKIEEYSK 384
>gnl|CDD|219186 pfam06810, Phage_GP20, Phage minor structural protein GP20. This
family consists of several phage minor structural
protein GP20 sequences of around 180 residues in length.
The function of this family is unknown.
Length = 156
Score = 31.6 bits (72), Expect = 1.2
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 736 EKSLTAEQKQKALKEKELKTKESEINVLKNQSSDN--VTKQITELKTQYEQEIKKLEDTL 793
K A +++ +LK K+LK ++ +I LK + DN + K+I +LK Q + ++ E L
Sbjct: 20 SKLDKANEERDSLK-KQLKNRDKQIEDLKKKVKDNEELQKKIEKLKQQNKTAKEEYEAKL 78
Query: 794 VQERQEY 800
+
Sbjct: 79 ADTKLNN 85
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 33.0 bits (75), Expect = 1.2
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 584 QRLYSVARDAFHPNLVQ-----YLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKK 638
Q L + R +P+ VQ ++ ++ RAE EK G+LE+ ++ LS EA +
Sbjct: 856 QDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKR---GKLEAHRAMLSGSEANSAR 912
Query: 639 FETDILEKSSKITQLEASIREERERATDLS-------VKAGSAASRELNQLREELTQLKK 691
+T ++ K TQ + + + + AA + + + ++ +
Sbjct: 913 RDTMEIQNEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAE 972
Query: 692 EAQRNAEKVTK 702
++ + K
Sbjct: 973 AVRKTVRRSVK 983
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 32.1 bits (74), Expect = 1.3
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 673 SAASRELNQLREELTQLKKEAQRNAEKVTK---LE------RDKTSLEENLKSKETQMTK 723
S A +++ EE Q+ +EA++ AE + K LE + + E LK + ++ +
Sbjct: 23 SIAEAKISSAEEEAKQIIEEAKKEAEALKKEALLEAKEEIHKLRAEAERELKERRNELQR 82
Query: 724 TISDLQTKCSTLEKSL-TAEQKQKAL--KEKELKTKESEINVLKNQSSDNVTKQITEL 778
L K TL++ + E+K+++L KEKEL ++ ++ + + + + +Q EL
Sbjct: 83 QEKRLLQKEETLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQEL 140
>gnl|CDD|221489 pfam12252, SidE, Dot/Icm substrate protein. This family of proteins
is found in bacteria. Proteins in this family are
typically between 397 and 1543 amino acids in length.
This family is the SidE protein in the Dot/Icm pathway of
Legionella pneumophila bacteria. There is little
literature describing the family.
Length = 1443
Score = 32.9 bits (75), Expect = 1.4
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 31/164 (18%)
Query: 611 SSTEKTQITG---ELESLKSKLSA--LEAEKK---KFETDILEKSSKITQLEASIREERE 662
S + QI ELESL+ + + E+K +++ I S +IT+LE
Sbjct: 1069 SRELREQIQSVRQELESLQRAVVTPVVTDEEKVRERYDALIENTSKRITELE-------- 1120
Query: 663 RATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMT 722
+A ++ A LN L++E+T L+ E R K+ D + +E ++
Sbjct: 1121 KAKLANLDVVKKAISNLNNLQQEVTLLRNEKIRMHTGTDKV--DFSDIE--------KLE 1170
Query: 723 KTISDLQTKCST-----LEKSLTAEQKQKALKEKELKTKESEIN 761
K + + TK + + K ++A +K+K + ELK+K ++
Sbjct: 1171 KQLQVIDTKLADAYLLEVTKQISALEKEKPKNQSELKSKIAKFF 1214
Score = 32.5 bits (74), Expect = 1.9
Identities = 59/273 (21%), Positives = 107/273 (39%), Gaps = 51/273 (18%)
Query: 210 VKDAKKTR-RKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEK 268
V D +K R R + L +T T+ + L N + I L+N++ +
Sbjct: 1095 VTDEEKVRERYDALIENTSK----RITELEKAKLANLDVVKKAIS----NLNNLQQEVTL 1146
Query: 269 LEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELE 328
L EK M T T K S++ KL++++ + T+ D + L V +
Sbjct: 1147 LRNEK--------IRMHTGTDKVDFSDIEKLEKQLQVIDTKLAD------AYLLEVTKQI 1192
Query: 329 TEAAAFKKSNAAEREAEALRTKLAAAEGLCEEL-MDENEEMKKELRYLEEEMDEMQDHFR 387
+ K N +E L++K+A ++ + NE +KK +D
Sbjct: 1193 SALEKEKPKNQSE-----LKSKIAKFFDTTADIEVLRNERIKKH--------GSSKDPLD 1239
Query: 388 EDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVN 447
D+ L L+ N ++S + Q++ + E ++K +
Sbjct: 1240 LSDLDK---LSGNLQGV--NQSLVSILITTIRSSLNQMKPKTFEMQEKEIQQN------- 1287
Query: 448 KVERIQALEKELKLANETAEKLQKDLKEATDKL 480
E + LEK L ++TAEKL++D+ + D L
Sbjct: 1288 -FELLAKLEKTLD-KSDTAEKLREDIPKLKDLL 1318
Score = 30.2 bits (68), Expect = 8.5
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 46/166 (27%)
Query: 599 VQYLQIEKVRAESSTEKT------QITGELESLKSKL------------SALEAEKKKFE 640
V L+ EK+R + T+K ++ +L+ + +KL SALE EK K +
Sbjct: 1144 VTLLRNEKIRMHTGTDKVDFSDIEKLEKQLQVIDTKLADAYLLEVTKQISALEKEKPKNQ 1203
Query: 641 TDILEKSSKITQLEASI---REERERA----------TDLSVKAG-------SAASRELN 680
+++ K +K A I R ER + +DL +G S S +
Sbjct: 1204 SELKSKIAKFFDTTADIEVLRNERIKKHGSSKDPLDLSDLDKLSGNLQGVNQSLVSILIT 1263
Query: 681 QLREELTQLK--------KEAQRNAEKVTKLERDKTSLEENLKSKE 718
+R L Q+K KE Q+N E + KLE+ + K +E
Sbjct: 1264 TIRSSLNQMKPKTFEMQEKEIQQNFELLAKLEKTLDKSDTAEKLRE 1309
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 32.2 bits (73), Expect = 1.6
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 342 REAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKEL 401
+E E L +L E EE+ + + ++ E LEE + ++ E LKK
Sbjct: 149 KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP--------GEVYDLKKRW 200
Query: 402 EQTAKNCRIL-SFKLRKSERRSEQLEAEKLEAE 433
++ + + + + L + +E +
Sbjct: 201 DELEPGVELPEEELISDLVKETLNLAPKDIEGQ 233
Score = 30.3 bits (68), Expect = 6.7
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 632 LEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKK 691
+E +K+ + ++ K Q + +E +L K +E +L +EL +L+
Sbjct: 105 VELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKL-EELQKEKEELLKELEELEA 163
Query: 692 EAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSL 739
E + E++ +LE + + LEE LK + + DL+ + LE +
Sbjct: 164 EYEEVQERLKRLEVENSRLEEMLKKLPGE----VYDLKKRWDELEPGV 207
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 32.6 bits (75), Expect = 1.6
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 723 KTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQS-----SDNVTKQITE 777
K +S L T C+ + S A + + E E++ L+ ++ D ++
Sbjct: 398 KAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRA 457
Query: 778 LKTQYEQEIKKLEDTLVQERQEYEDLTN-RYDILEGE 813
E E+ LE QE++ E + R ++
Sbjct: 458 ELAALEAELAALEARWQQEKELVEAILALRAELEADA 494
Score = 31.8 bits (73), Expect = 3.3
Identities = 31/120 (25%), Positives = 40/120 (33%), Gaps = 24/120 (20%)
Query: 414 KLRKSERRSEQLEAEK--LEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKL-- 469
L RR LE E LE E G + ER+ L EL L
Sbjct: 420 ALEDLRRRIAALELELDALEREAA--------LGADHDERLAELRAELAALEAELAALEA 471
Query: 470 ----QKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKP 525
+K+L EA L +L A P+ + A + L E L A G +P
Sbjct: 472 RWQQEKELVEAILALRA-------ELEADADAPADDDAALRAQ-LAELEAALASAQGEEP 523
>gnl|CDD|128345 smart00030, CLb, CLUSTERIN Beta chain.
Length = 206
Score = 31.7 bits (72), Expect = 1.7
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 279 RRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSN 338
L M T SK E+ + V ++KT E N E+KSL L T A KK
Sbjct: 7 NELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSL------LSTLEEAKKKKE 60
Query: 339 AAEREAEALRTKLAAAEGLCEE-LMDENEEMK 369
A ++ KL ++G+C E +M EE K
Sbjct: 61 EALKDTRESEEKLKESQGVCNETMMALWEECK 92
>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown].
Length = 1213
Score = 32.6 bits (74), Expect = 1.8
Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 15/184 (8%)
Query: 558 MRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQ 617
L ++ME++ E L+ E + R ++ A+ QY Q E S
Sbjct: 59 YEGLSEAMEKQKKAYEDLK-QEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLS----- 112
Query: 618 ITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVK---AGSA 674
G+ +L + E ++ + I + + + + + K +
Sbjct: 113 --GQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRES 170
Query: 675 ASRELNQLREELTQLKK----EAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQT 730
R+ L ++L + KK E KL + ++ E L+ TQM+++ L
Sbjct: 171 FGRQTEALNKQLERTKKVADALTYVLDEAQQKLSQALSARLERLQESRTQMSQSSGQLGK 230
Query: 731 KCST 734
+ T
Sbjct: 231 RLET 234
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in this
family are typically between 187 and 201 amino acids in
length. There is a single completely conserved residue Q
that may be functionally important.
Length = 158
Score = 31.0 bits (71), Expect = 1.8
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 987 ETSMDRLEAEEKARKSDVAAVKMRYDKRATALSDELKAIQGQVLRFKRERDTFKHM 1042
E + D LE E A ++++ A RY K E K ++ + + E D H
Sbjct: 55 ELAADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQ 110
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 31.1 bits (71), Expect = 1.8
Identities = 20/91 (21%), Positives = 42/91 (46%)
Query: 676 SRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTL 735
L +L E+ +L+ +R ++ LER+ L+ + E ++ L+ + +
Sbjct: 56 EETLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEEV 115
Query: 736 EKSLTAEQKQKALKEKELKTKESEINVLKNQ 766
++ Q++K ELK ++ EI LK +
Sbjct: 116 QRLKNIIQQRKTQYNHELKKRDREIEKLKER 146
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 32.2 bits (74), Expect = 2.0
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 316 EKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYL 375
+ L E K + + +L E + L E +K+E+ L
Sbjct: 4 DALDEILGDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEE--QRLEAEGLRLKREVDRL 61
Query: 376 EEEMDEMQ 383
EE++ ++
Sbjct: 62 REEIERLK 69
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase.
Length = 639
Score = 32.1 bits (73), Expect = 2.1
Identities = 53/236 (22%), Positives = 92/236 (38%), Gaps = 33/236 (13%)
Query: 522 GGKPPKLGALPK-TPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEE 580
GG KL LP+ + S K +P ++ S E D ++ L
Sbjct: 50 GGDASKLNVLPQESSSSLK-------------EPIGIVYSDNSSKTIEPDSQDLLLDKRG 96
Query: 581 ERYQRLYSVARDAFHP---NLVQYL-----QIEKVRAESSTEKTQITGELESLKSKLSAL 632
E R+ S D H ++++ + Q + + E +++ + + SA
Sbjct: 97 EHKARVLSATDDDTHSQTDDIIKQVTQKAGQDDSDQQEKNSQSQSASQAESLEHVQQSAQ 156
Query: 633 EAEKKKFETDILEKSSKITQ----LEASIREERERATDLSVKAGSAASRELNQLREELTQ 688
+EK + +L K+ K T +A +R+ R++ V A++ EL
Sbjct: 157 TSEKVDEKEPLLTKTDKQTDQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRL 216
Query: 689 LKKEAQR---NAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTA 741
KE QR +A K + L ++ E LK+ E + K +Q CS + K L A
Sbjct: 217 RIKEVQRVLGDASKDSDLPKNAN---EKLKAMEQTLAKG-KQMQDDCSIVVKKLRA 268
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like. This family is a set
of eukaryotic tropomyosins. Within the yeast Tmp1 and
Tmp2, biochemical and sequence analyses indicate that
Tpm2p spans four actin monomers along a filament,
whereas Tpmlp spans five. Despite its shorter length,
Tpm2p can compete with Tpm1p for binding to F-actin.
Over-expression of Tpm2p in vivo alters the axial
budding of haploids to a bipolar pattern, and this can
be partially suppressed by co-over-expression of Tpm1p.
This suggests distinct functions for the two
tropomyosins, and indicates that the ratio between them
is important for correct morphogenesis. The family also
contains higher eukaryote Tmp3 members.
Length = 143
Score = 30.6 bits (70), Expect = 2.2
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 24/144 (16%)
Query: 299 LQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLC 358
Q+R EL+ + ++L E + L+ KK+ E E E L +L A+
Sbjct: 12 AQERAEELEEKLKELEQENLEKEQEITSLQ------KKNQQLEEEVEKLEEQLKEAKEKL 65
Query: 359 EE---LMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKL 415
EE L E + + ++ LEEE++E + K L++T + R K
Sbjct: 66 EESEKLATNAEALTRRIQLLEEELEESE---------------KRLKETTEKLREADKKA 110
Query: 416 RKSERRSEQLEAEKLEAEKKCREV 439
+SER+ + LE E+ E E+K E+
Sbjct: 111 EESERKVKALENERDEWEEKYEEL 134
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 32.2 bits (74), Expect = 2.4
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 16/155 (10%)
Query: 294 SELLKLQQRVNELKTENEDLNDEKKSL-------SLRVRELETEAAAFKKSNAAEREAEA 346
+L Q R+ E+ E +LN+ + L S + ++T +K + + E
Sbjct: 300 RQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEE 359
Query: 347 LRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQ---------ADEYSSL 397
L +L + EE ++ EE + EEE+DE++ + Q A +Y
Sbjct: 360 LEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQA 419
Query: 398 KKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEA 432
+ LE+ + C + +E E+ +A++ EA
Sbjct: 420 VQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEA 454
Score = 30.3 bits (69), Expect = 9.2
Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 32/200 (16%)
Query: 299 LQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREA------EALRTKLA 352
L+Q + + D + +L+ E+ A F +AAE A E LR +L
Sbjct: 940 LKQDYQQAQQTQRDAKQQAFALT----EVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLE 995
Query: 353 AAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSL--KKELEQTAKNCRI 410
AE +++LR + ++ + + + A SS K+++ Q K +
Sbjct: 996 QAEQERTRA-------REQLRQAQAQLAQ----YNQVLASLKSSYDAKRQMLQELKQ-EL 1043
Query: 411 LSFKLRKSERRSEQLEA--EKLEAE-KKCREVCGGMEGVNKVERIQALEKELKLANETAE 467
+ E+ A ++L A R +E +++ E E+ +
Sbjct: 1044 QDLGVPADSGAEERARARRDELHARLSANRSRRNQLE-----KQLTFCEAEMDNLTKKLR 1098
Query: 468 KLQKDLKEATDKLERANGGK 487
KL++D E +++ A G
Sbjct: 1099 KLERDYHEMREQVVNAKAGW 1118
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 32.2 bits (74), Expect = 2.5
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 47/174 (27%)
Query: 306 LKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDEN 365
++ E + +E L R+ +LE E A KK + EA + +L
Sbjct: 396 IRMEIDSKPEELDELDRRIIQLEIEREALKK-----EKDEASKERL-------------- 436
Query: 366 EEMKKELRYLEEEMDEMQDHFREDQA--DEYSSLKKELEQTAKNCRILSFKLRKSERRSE 423
E+++KEL LEEE ++++ ++ ++A +K+E+EQ + +L ++ER +
Sbjct: 437 EDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQ-------VRLELEQAEREGD 489
Query: 424 QLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKD--LKE 475
+A +L + ++ LEK L+ A + K L+E
Sbjct: 490 LAKAAEL-----------------QYGKLPELEKRLQAAEAKLGEETKPRLLRE 526
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 31.6 bits (72), Expect = 2.5
Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 26/209 (12%)
Query: 610 ESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSV 669
E EK I E+ESL +++ ++++ + + +I + ++I +L+ I E +E +
Sbjct: 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101
Query: 670 KAGSAA------------------SRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLE 711
A S+ + L +T + + + + + + DK SLE
Sbjct: 102 LLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLE 161
Query: 712 ENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEK-ELKTKESEINVLKNQSSDN 770
E K+ + + L + LE L + QKA K E + L +++
Sbjct: 162 E----KQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217
Query: 771 VTKQITELKTQYEQEIKKLEDTLVQERQE 799
K + E E K E QE
Sbjct: 218 EQKALAE---AAAAEAAKQEAAAKAAAQE 243
>gnl|CDD|139585 PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional.
Length = 173
Score = 31.1 bits (70), Expect = 2.5
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 622 LESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQ 681
L++L + S ++ + K LE + + EA + ++ A + +A S A + N+
Sbjct: 42 LKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNK 101
Query: 682 LREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTA 741
L EE K + A V ++E K L+++ +MT TI+ LEK L
Sbjct: 102 LLEETNNEVKAQKDQA--VKEIELAKGKALSQLQNQIVEMTITIAS-----KVLEKQLKK 154
Query: 742 EQKQKALKEKEL 753
E KA E EL
Sbjct: 155 ED-YKAFIETEL 165
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 31.6 bits (72), Expect = 2.6
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 331 AAAFKKSNAAEREAEALRTKL--------AAAEGLCEELMDE-NEEMKKELRYLEEEMDE 381
A ++ +REAE R + E L + +E E ++ L EE DE
Sbjct: 42 AGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADE 101
Query: 382 MQDHFREDQADEYSSLKKELEQ 403
+++ ++E E ++L EL +
Sbjct: 102 IREKWQEALRREQAALSDELRR 123
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 31.8 bits (72), Expect = 2.6
Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 621 ELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELN 680
E + + + + + + +S +T S + + D
Sbjct: 392 SPELMGASALSPSGKPRHSGVSVPASTSAMT---HSFDDNTSKHADPCAMGVKRMDEG-- 446
Query: 681 QLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQT 730
L + Q +EK+ + E L+ KE+ + +T+ +Q+
Sbjct: 447 ----ILDERLGRLQALSEKLRTQHEEIKRCREALQKKESIVMETLEKIQS 492
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5
subunit [Transcription].
Length = 548
Score = 32.0 bits (72), Expect = 2.8
Identities = 22/86 (25%), Positives = 35/86 (40%)
Query: 168 STSSSNAEPSTSSNTTRTRSSASPRLKTPDKPSKADVDFILQVKDAKKTRRKENLETDTE 227
SSSN E N + SS K P K + + D T +E+ ++
Sbjct: 201 QPSSSNNEAPKEGNNQTSLSSIRSSKKQERSPKKKAPQRDVSISDRATTPIAPGVESASQ 260
Query: 228 SLAGTETTDTTETTLVNDNEYSDQID 253
S++ T T +T+T L + S + D
Sbjct: 261 SISSTPTPVSTDTPLHTVKDDSIKFD 286
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 32.0 bits (72), Expect = 2.9
Identities = 20/72 (27%), Positives = 29/72 (40%)
Query: 133 NSSRRPPPEDSSNEDDDYRSTKYVVRRRTSHLPATSTSSSNAEPSTSSNTTRTRSSASPR 192
N+SR +D D D R + V + +++S S PS S+ TT SS
Sbjct: 239 NTSREGQTQDDQERDGDGRVIEPGVGLPGVRVGDSTSSPSTTRPSGSTTTTTPASSGPSA 298
Query: 193 LKTPDKPSKADV 204
P S+ V
Sbjct: 299 PGGPGSSSRNAV 310
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 31.8 bits (73), Expect = 2.9
Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 21/153 (13%)
Query: 558 MRDLQDSMEREADLREQLRFAEEERYQRLYSVA-------RDAFHPN------LVQYLQI 604
+ L +S E + +E + ER R+ + + P LV+ +
Sbjct: 301 LEILDESTENDELFKELSEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQ 360
Query: 605 EKVRAESSTEKTQITGELESLKSKLSALEA-EKKKFETDILEKSSKITQLEASIREERER 663
E TE + +E L+ +L L+A +K K + + R +
Sbjct: 361 AAASPEYDTELEVLLQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGK 420
Query: 664 ATDLSVKAGSAASRELNQLREE----LTQLKKE 692
+ A ++L L+ L LK +
Sbjct: 421 IYKV---LKEATRQDLELLKNVWGEILESLKAQ 450
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 31.5 bits (72), Expect = 3.0
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 288 TSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREA--- 344
T +T +E+ +L++R+ +L +ENE L E + L+ RE + + + +E
Sbjct: 60 TLRTLVAEVKELRKRLAKLISENEALKAENE--RLQKREQSIDQQIQQAVQSETQELTKE 117
Query: 345 -EALRTKLAAAEGLCEELMDENEEMK 369
E L+++ +GL ++L +
Sbjct: 118 IEQLKSERQQLQGLIDQLQRRLAGVL 143
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 30.6 bits (70), Expect = 3.1
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 295 ELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAA 354
E +L+ L+ E E+L +E + L R+ L E ++K ERE E + A
Sbjct: 5 EEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRK--RTEREREEAKK--YAI 60
Query: 355 EGLCEELMDENEEMKKELRYLEEEMDE 381
E ++L+ + +++ L +E D
Sbjct: 61 EKFAKDLLPVLDNLERALAAAKENEDV 87
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 31.5 bits (72), Expect = 3.2
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 527 KLGALPKTP--SVEKVSRETLT---RGGSQEDPTVLMRDLQDSME-------READLREQ 574
LG+ P +V+ +RE L R E+P L +LQ +M +E ++ +
Sbjct: 449 GLGSRPAVSEEAVDAAAREALAPFERPAGAENPYTLHAELQQTMNDLVGIIRKEDEIEQA 508
Query: 575 L-RFAE-EERYQRLYSVARDAFHP 596
L + AE +ER + ++P
Sbjct: 509 LEKLAELKERAANVSVEGHRQYNP 532
>gnl|CDD|227731 COG5444, COG5444, Uncharacterized conserved protein [Function
unknown].
Length = 565
Score = 31.7 bits (72), Expect = 3.3
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 9/130 (6%)
Query: 683 REELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAE 742
++E+ +K A+ EK+ KL+++ +L ++SK ++ I L+ +
Sbjct: 145 KDEVDSARKHAKDTLEKLYKLDQEGMTLMAAVESKMQELKAIIRQLEEWTIKGGATKKGV 204
Query: 743 QKQ---KALKEKELKTKESEINVLKNQSSDNVTKQITE------LKTQYEQEIKKLEDTL 793
KA E + K +E+ + D T+ E L E K + L
Sbjct: 205 PIHYVAKAFAEVTIHKKAAEVALQSETYLDIKTELAKERPDMRDLDKPLESANKTGYEGL 264
Query: 794 VQERQEYEDL 803
E L
Sbjct: 265 AGEDIVPFFL 274
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 31.6 bits (72), Expect = 3.4
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 622 LESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQ 681
+E L+ K+ AL+ + K+ + IL E +DL K S R+ +
Sbjct: 279 MEKLQEKIKALKYQLKRLKKMILLF---------------EMISDLKRKLKSKFERDNEK 323
Query: 682 LREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMT 722
L E+ + KKE ++ +K ++ER LEE ++ E Q T
Sbjct: 324 LDAEVKEKKKEKKKEEKKKKQIER----LEERIEKLEVQAT 360
>gnl|CDD|130658 TIGR01597, PYST-B, Plasmodium yoelii subtelomeric family PYST-B.
This model represents a paralogous family of Plasmodium
yoelii genes preferentially located in the subtelomeric
regions of the chromosomes. There are no obvious
homologs to these genes in any other organism.
Length = 255
Score = 31.0 bits (70), Expect = 3.5
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 711 EENLKSKETQMTKTISDLQTK----CSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQ 766
+ N KE + I D K +TL ++K K L K K E L N+
Sbjct: 73 DCNDDDKEIAHLRNIIDSHIKKHKERNTLPDLNNVDKKTKKLINKLQKELEELKKELDNE 132
Query: 767 SSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKE 824
+D +T Q + IKK E+ V E ++++ L N + EH + +
Sbjct: 133 MNDELTIQ----PIHDKIIIKKDENNSVSEHEDFKQLENEKNSSVSEHEEFDIASSDN 186
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 31.5 bits (72), Expect = 3.5
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 28/129 (21%)
Query: 252 IDLLRHELDNMKAKCEKL-------EREKSDIL---LRRLASMETTTSKTTASELLKLQQ 301
I+++R D +AK E+L E++ IL LRRL +E + EL K
Sbjct: 393 IEIIRESKDKPEAK-EELMARFGLSEKQAEAILDLRLRRLTGLEEEKIEKELKELEKEI- 450
Query: 302 RVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLC--E 359
+ L E++ L + +EL KK ER RT++ E +
Sbjct: 451 -----ADLEKILASEERLLDIIKKELL----EIKKKFGDER-----RTEIVEEEEDEIED 496
Query: 360 ELMDENEEM 368
E + E++
Sbjct: 497 EDLIAEEDV 505
>gnl|CDD|234780 PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Validated.
Length = 339
Score = 31.2 bits (72), Expect = 3.6
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 36/122 (29%)
Query: 682 LREELTQLKKEAQRNAEKVTKLERDKTSLEE------NLKSKETQMTKTISDLQTKCSTL 735
+ E+L +L +EA + LE +LE K + T++ K +
Sbjct: 1 MMEDLEELVEEALAAIAAASDLE----ALEALRVKYLGKKGELTELLKGL---------- 46
Query: 736 EKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQ 795
L E++++A IN LK + + E K + E L L
Sbjct: 47 -GKLPPEERKEAGA---------LINELKQA----IEAALEERKEELEAA--ALNARLAA 90
Query: 796 ER 797
E
Sbjct: 91 ET 92
Score = 30.8 bits (71), Expect = 4.3
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 615 KTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIR----EERERATDLSVK 670
+ + + L ALEA + K+ L K ++T+L + EER+ A L +
Sbjct: 9 VEEALAAIAAASD-LEALEALRVKY----LGKKGELTELLKGLGKLPPEERKEAGALINE 63
Query: 671 AGSAASRELNQLREELTQLKKEAQRNAEKV 700
A L + +EEL A+ AE +
Sbjct: 64 LKQAIEAALEERKEELEAAALNARLAAETI 93
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 31.2 bits (71), Expect = 3.7
Identities = 20/97 (20%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Query: 603 QIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERE 662
++++ R E + +K ++ + K+ L +A+++K E E+ +T LE+S++++++
Sbjct: 174 ELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQ 233
Query: 663 RATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEK 699
+ ++L ++LR+ + + ++EA+ AE+
Sbjct: 234 QLSEL--------RANESRLRDSIARAEREAKARAER 262
>gnl|CDD|237560 PRK13922, PRK13922, rod shape-determining protein MreC;
Provisional.
Length = 276
Score = 30.7 bits (70), Expect = 4.0
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 677 RELNQLREELTQLKKEAQRNAEKVTK---LERDKTSLEENLKSKETQMTKTIS 726
L LREE +LKKE ++ + LE + L E L KE+ + I+
Sbjct: 69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLDYQFIT 121
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 31.4 bits (71), Expect = 4.1
Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 10/155 (6%)
Query: 45 NDLRKDDFTVSSPSLSSWTSAST---IRDYKEHGNRNRDNDLRKDDFTVSSP---SLSSW 98
N S P S + HG + +P S
Sbjct: 123 NPSSTQSRKDSGPGDGSPVQKRKNPLLPSSSTHGTHPPIVFTDNNGSHAGAPNARSRKEI 182
Query: 99 TSASTIRESEKKNEGRSWTSSTNLSSVSSSNDSQNSSRRPPPEDSSNEDDDYRSTKYVVR 158
S + R SS++ S+ S + +SR +S + ST +++
Sbjct: 183 PSLGSQSMQLPSPHFRQKFSSSDTSNGFSYPSIRKNSRH---SSNSMPSFPHSSTAVLLK 239
Query: 159 RRTSHLPATSTSSSNAEPSTSSNTTRTRSSASPRL 193
R + S SSN PS+S++ + SS P +
Sbjct: 240 RHSGS-SGASLISSNITPSSSNSEAMSTSSKRPYI 273
>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase.
Length = 295
Score = 30.9 bits (70), Expect = 4.2
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 999 ARKSDVAAVKMRYDKRATALSDELKAIQGQVLRFKRERDTFKHML-EGAQKTIADLKASH 1057
A DV D ALS L +I + R ++ M E A T+ ++ +
Sbjct: 25 AAGMDVWL----LDSDPAALSRGLDSISSSLARLVKK----GKMSQEEADATLGRIRCTT 76
Query: 1058 NSPTTSRLSGGSTHSEVITTSDRKKKGLFGKLKQLTRSS 1096
N L E I S+ KK LF +L ++ + S
Sbjct: 77 N---LEELRDADFIIEAIVESEDLKKKLFSELDRICKPS 112
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 31.4 bits (71), Expect = 4.3
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 292 TASELLKLQQRVNELKTENEDLNDEKKSLSLRVR-----------ELETEAAAFKKSNAA 340
T +L KL Q+ EL + L +E+ + RV +L T + AA
Sbjct: 618 TMKDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAA 677
Query: 341 EREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKE 400
E + E R A EG E + N+E++ EL +E+ ++ D D D + +E
Sbjct: 678 ELQKEEARL---ALEGNIERTKELNDELRAELELHRKEILDLFDCGTADTEDAFREAARE 734
Query: 401 LEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELK 460
+Q + + +++ EA +L A RE+ K E + LE+ +
Sbjct: 735 EQQLTQRES--RLESLEAQLEGVAAEAYELSASLDQREL--------KEEELALLEEAID 784
Query: 461 LANETAEKLQKDLKEATDKLERANGG 486
+E E+L + + ++ + GG
Sbjct: 785 ALDEEVEELHAQVAALSRQIAQLEGG 810
>gnl|CDD|218602 pfam05478, Prominin, Prominin. The prominins are an emerging
family of proteins that among the multispan membrane
proteins display a novel topology. Mouse prominin and
human prominin (mouse)-like 1 (PROML1) are predicted to
contain five membrane spanning domains, with an
N-terminal domain exposed to the extracellular space
followed by four, alternating small cytoplasmic and
large extracellular, loops and a cytoplasmic C-terminal
domain. The exact function of prominin is unknown
although in humans defects in PROM1, the gene coding for
prominin, cause retinal degeneration.
Length = 807
Score = 31.1 bits (71), Expect = 4.6
Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 36/207 (17%)
Query: 615 KTQITGELESLKSKLSALEAEKKKFETDILEKSSKIT--------QLEASIREERERATD 666
K+ + LE++ L+ K D LE +K QL +R R R +
Sbjct: 232 KSHVLPVLEAIVELGQVLQEMK-----DGLESVNKTLKELREGGSQLRDGLRGVRRRLNN 286
Query: 667 LSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTIS 726
K ++ + L+ L +A + ++ + +LEE +K+ + +
Sbjct: 287 SLNKLCL--TQMCASILSSLSILALDA--DFNQLPDVTEILENLEEVVKADFSSI----- 337
Query: 727 DLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQIT-ELKTQYE 783
+Q ST E E K +K + L + +D +V + + ++ +
Sbjct: 338 -VQEGNSTFE-----EIPSK-VKNQTSSVVPDVKAALDSLGTDIKSVAEDLPLQVLSVLS 390
Query: 784 QEIKKLEDTLVQERQEYEDLTNRYDIL 810
Q + + + E +YD
Sbjct: 391 QILNNTQSSSNPYLPYVE----QYDTY 413
>gnl|CDD|206243 pfam14073, Cep57_CLD, Centrosome localisation domain of Cep57. The
CLD or centrosome localisation domain of Cep57 is found
at the N-terminus, and lies approximately between
residues 58 and 239. This region lies within the first
alpha-helical coiled-coil segment of Cep57, and
localises to the centrosome internally to gamma-tubulin,
suggesting that it is either on both centrioles or on a
centromatrix component. This N-terminal region can also
multimerise with the N-terminus of other Cep57
molecules. The C-terminal part, Family Cep57_MT_bd,
pfam06657, is the microtubule-binding region of Cep57.
Length = 178
Score = 30.2 bits (68), Expect = 4.6
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELET-----EAAAFKKSNAAEREAEALR 348
S L LQ+++ L+ E D ++LS + E +N ++ + L
Sbjct: 4 SALKNLQEKIRRLELERTQAEDNLQTLSREATHYKKVLEEEEQERNLAANELTKQNKDLT 63
Query: 349 TKLAAAEGLCEELMDENEEMKKELRYLE-------EEMDEMQDHFREDQADEYSSLKKEL 401
++L++AE C L + E M++ + E E+ +Q DQ D + L+K L
Sbjct: 64 SQLSSAESRCSLLEKQLEYMRRMVENAEKERTAVLEQQVSLQREKEHDQMDVQAQLEK-L 122
Query: 402 EQTAKNCRILSFKLRKSERRSEQLEAEKLEAE 433
E K L+ +E + +QLE + E E
Sbjct: 123 EVLEKEYLRLTRTQSLAETKIQQLEEKLQEEE 154
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 31.4 bits (70), Expect = 4.8
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 166 ATSTSSSNAEPSTSSNTTRTRSSASPRLK-TPDKPSKADVDFILQVKDAKKTRRKE 220
++S+SSS++ S+SS ++R SA+P L +P P +A VD ++ RR+E
Sbjct: 1816 SSSSSSSSSSSSSSSPSSRPSRSATPSLSPSPSPPRRAPVD------RSRSGRRRE 1865
>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction
endonuclease-like fold, RmuC family [General function
prediction only].
Length = 448
Score = 30.8 bits (70), Expect = 5.0
Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 11/157 (7%)
Query: 560 DLQDSMEREADLREQLRFAEEERYQ--RLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQ 617
L+ + A + EQL R + +L + AR NL ++ +++A + Q
Sbjct: 29 RLEQMLGELAAVLEQLLLLLAFRAEAEQLRTFARSLQALNLELIQELNELKARLQQQLLQ 88
Query: 618 ITGELESLKSKLSALEAEKKKFETDILEKSSK---------ITQLEASIREERERATDLS 668
+L+ L L+ L +E ++ +I E+ ++ + QL +RE E+ +
Sbjct: 89 SREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQL 148
Query: 669 VKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLER 705
+ ++ E + L EE+ +L E Q+ A++ L
Sbjct: 149 EQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTA 185
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 30.7 bits (69), Expect = 5.1
Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 17/171 (9%)
Query: 637 KKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQR- 695
KK + E + K + + +ER + K EL++ + + + +++A
Sbjct: 180 KKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFA 239
Query: 696 --NAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALK-EKE 752
NA+K R K +NL T +K + QK++ K + E
Sbjct: 240 QDNADKQRDEVRQKQQEAKNLPKPA----------DTSSPKEDKQVAENQKREIEKAQIE 289
Query: 753 LKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDL 803
+K + E K+ + ++ + E K ++ K + + EDL
Sbjct: 290 IKKNDEEALKAKDHKAFDLKQ---ESKASEKEAEDKELEAQKKREPVAEDL 337
>gnl|CDD|217894 pfam04102, SlyX, SlyX. The SlyX protein has no known function. It
is short less than 80 amino acids and is found close to
the slyD gene. The SlyX protein has a conserved PPH(Y/W)
motif at its C-terminus. The protein may be a
coiled-coil structure.
Length = 68
Score = 27.9 bits (63), Expect = 5.2
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 345 EALRTKLAAAEGLCEELMD-------ENEEMKKELRYLEEEMDEMQDHFREDQADE 393
E L +LA E EEL + + ++++LR L E + E++ QA+E
Sbjct: 7 EELEIRLAFQEDTIEELNQVVAEQQRQIDRLQRQLRLLVERLKEVESSNIASQAEE 62
>gnl|CDD|235503 PRK05561, PRK05561, DNA topoisomerase IV subunit A; Validated.
Length = 742
Score = 30.8 bits (71), Expect = 5.4
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 20/100 (20%)
Query: 275 DIL---LRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEA 331
IL LRRLA +E + EL K + + L E+K L +EL+ +A
Sbjct: 425 AILELRLRRLAKLEEIEIRKEQDELRKEIAELEAI------LASERKLRKLIKKELKADA 478
Query: 332 AAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKE 371
F R RT + AE +DE + E
Sbjct: 479 KKF----GDPR-----RTPIEEAEE--AIAIDEEALIPDE 507
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 30.7 bits (70), Expect = 5.5
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 598 LVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLE--- 654
L L +E+ + + +L++ LSA EAE+ + + + E + E
Sbjct: 65 LADLLSLERQG------NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRA 118
Query: 655 ASIREERERATDLSVKAGSAASRELNQ----LREELTQL 689
+ +E + +S +A + LNQ LR +L L
Sbjct: 119 GELAQELDSEKQVSARALAQVEL-LNQQIAALRRQLAAL 156
>gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous
L-alpha-amino acid receptor GPRC6A which is a
broad-spectrum amino acid-sensing receptor. This family
includes the ligand-binding domain of the promiscuous
L-alpha-amino acid receptor GPRC6A which is a
broad-spectrum amino acid-sensing receptor, and its fish
homolog, the 5.24 chemoreceptor. GPRC6A is a member of
the family C of G-protein-coupled receptors that
transduce extracellular signals into G-protein
activation and ultimately into cellular responses.
Length = 403
Score = 30.6 bits (69), Expect = 6.2
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 789 LEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKE---KENNHGRLQQTQKGMWISKRP 845
L +L + + I+E V++ ++ + +++ +WI+
Sbjct: 209 LPASLSDNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFLLFNKAIERNINKVWIASDN 268
Query: 846 WSKKRKITTEPSVAK 860
WS +KI T+P+V K
Sbjct: 269 WSTAKKILTDPNVKK 283
>gnl|CDD|214660 smart00434, TOP4c, DNA Topoisomerase IV. Bacterial DNA
topoisomerase IV, GyrA, ParC.
Length = 444
Score = 30.6 bits (70), Expect = 6.3
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 677 RELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKT-ISDLQTKCSTL 735
+L R + + A +++ L R L + K K M + +S++Q + L
Sbjct: 348 GKLEAERLHILEGLFIALSIIDEIIVLIRSSKDLAKEAKEKL--MERFELSEIQAD-AIL 404
Query: 736 E---KSLTAEQKQKALKEKELKTKESEINVLKNQSSD 769
+ + LT + +K EKELK E EI L+ +
Sbjct: 405 DMRLRRLTKLEVEKL--EKELKELEKEIEDLEKILAS 439
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 30.4 bits (69), Expect = 6.4
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 30/132 (22%)
Query: 625 LKSKLSALEAEKK------KFETDILEKSS-------KITQLEASIREERERATDLSVKA 671
L+ KL LE E+K K I+EK K + EA + EE E+ ++ KA
Sbjct: 89 LQRKLKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQMEILEKA 148
Query: 672 GSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTK 731
+ + + + + L +L K Q+ +E+ T+ E TK I + + K
Sbjct: 149 LKSYLKIVKEENKSLQRLAKALQKESEERTQDE-----------------TKMIEEYRDK 191
Query: 732 CSTLEKSLTAEQ 743
L+ ++ E+
Sbjct: 192 IDALKNAIEVEK 203
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III
C-methyltransferase; Provisional.
Length = 390
Score = 30.4 bits (69), Expect = 6.5
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 676 SRELNQLREELTQLKKEAQRN-AEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCST 734
+ + L +LT L+K + E L++ +L++ ++ + K + +LQ K +T
Sbjct: 66 TATNDALANQLTALQKAQESQKQELEGILKQQAKALDQ-ANRQQAALAKQLDELQQKVAT 124
Query: 735 LEKS 738
+ S
Sbjct: 125 ISGS 128
>gnl|CDD|149649 pfam08663, HalX, HalX domain. HalX is a domain of unknown
function, previously (mis)annotated as HoxA-like
transcriptional regulator.
Length = 71
Score = 27.8 bits (62), Expect = 6.8
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 621 ELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELN 680
EL +L SK +ALEAEK LE S + +L+ I E R+ + + L
Sbjct: 12 ELFALASKRAALEAEK---PDAELEDSDEYQELQERIEELRDDLDATLDELDADDFEALF 68
Query: 681 Q 681
+
Sbjct: 69 R 69
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 29.8 bits (67), Expect = 7.1
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 736 EKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQ 795
EK L E+ +KE K E + K +++ K+I +LK + K LED ++
Sbjct: 9 EKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKN----KDLEDKYLR 64
Query: 796 ERQEYEDLTNRY 807
+ E +++ NRY
Sbjct: 65 SQAEIQNMQNRY 76
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 30.4 bits (69), Expect = 7.1
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 293 ASELLKLQQRVNELKTENEDLND-EKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKL 351
+L L +R EL L+D E S ++R+L E + ++ RE + + +
Sbjct: 6 LEKLESLLERYEEL---EALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDI 62
Query: 352 AAAEGLCEELMDENEEM-KKELRYLEEEMDEMQD 384
A+ + EE E EM K+EL LEE+++E+++
Sbjct: 63 KEAKEILEESDPEMREMAKEELEELEEKIEELEE 96
>gnl|CDD|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423). This
family represents a conserved region approximately 500
residues long within a number of Arabidopsis thaliana
proteins of unknown function.
Length = 446
Score = 30.5 bits (69), Expect = 7.2
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 291 TTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAF-KKSNAAEREAEALRT 349
EL + + V+ELK E + + L VR + EA F K++ A REAE L+
Sbjct: 326 ACDRELEEKAREVSELKMERQRKKPQIDELESIVRLKQAEADMFQLKADEARREAERLQR 385
Query: 350 KLAAAEGLCEELMDEN------EEMKKELRYLEEEMDEMQDHFRE 388
A EE E ++E +YL EE+ ++ R+
Sbjct: 386 IALAKTEKSEEEYASKYLKLRLSEAEEERQYLFEELKLQEESHRD 430
>gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed.
Length = 390
Score = 30.2 bits (69), Expect = 7.4
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 292 TASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEA 346
T SE+L+ Q V K + ++N+E+K +SL ++ LE A + R+ E
Sbjct: 317 TPSEVLEEGQEV---KVKVLEVNEEEKRISLSIKALEEAPAEEEDRREEYRQYEL 368
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 30.2 bits (69), Expect = 7.7
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 26/207 (12%)
Query: 300 QQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSN--------AAEREAEALRTKL 351
+Q + EL+ + ++L +E+ L L + L A F++ +AE + LR L
Sbjct: 53 EQEIRELRKQLDELTNERARLQLEIDNLRLAAEDFREKYEDELNLRQSAENDIVGLRKDL 112
Query: 352 AAA-------EGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEY-SSLKKELEQ 403
A E E L +E +KK EEE+ E+Q + E ++ K +L +
Sbjct: 113 DEATLARVDLEMKIESLQEELAFLKKNH---EEEVRELQSQIQGQVNVEMDAARKLDLTK 169
Query: 404 TAKNCR------ILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVER-IQALE 456
R + E +LE + A + + E + ++ R IQ+LE
Sbjct: 170 ALAEIRAQYEELAEKNRQEAEEWYKSKLEELQQAAARNGDALRSAKEEITELRRQIQSLE 229
Query: 457 KELKLANETAEKLQKDLKEATDKLERA 483
EL+ + L++ L E ++ E
Sbjct: 230 IELQSLKKQKASLERQLAELEERYELE 256
Score = 29.9 bits (68), Expect = 8.0
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 22/136 (16%)
Query: 246 NEYSDQIDLLRHELDNM-KAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVN 304
+Y + + R E + K+K E+L++ A+ ++ E+ +L++++
Sbjct: 176 AQYEELAEKNRQEAEEWYKSKLEELQQA---------AARNGDALRSAKEEITELRRQIQ 226
Query: 305 ELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDE 364
L+ E + L +K SL ++ ELE ER L L EEL
Sbjct: 227 SLEIELQSLKKQKASLERQLAELE------------ERYELELADYQDTISELEEELQQL 274
Query: 365 NEEMKKELRYLEEEMD 380
EM ++LR +E +D
Sbjct: 275 KAEMARQLREYQELLD 290
Score = 29.9 bits (68), Expect = 8.8
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 40/182 (21%)
Query: 653 LEASIREERERATDLSVKAGSAASRELNQLREELTQLKKE----------AQRNAEKV-T 701
LEA I E R++ + + S +E+ +LR++L +L E + AE
Sbjct: 30 LEAKIEELRQKKSAEPSRLYSLYEQEIRELRKQLDELTNERARLQLEIDNLRLAAEDFRE 89
Query: 702 KLE---RDKTSLEENLKSKETQM---TKTISDLQTKCSTLEKSLTAEQKQKALKEKELKT 755
K E + S E ++ + T DL+ K +L++ L LK K
Sbjct: 90 KYEDELNLRQSAENDIVGLRKDLDEATLARVDLEMKIESLQEEL------AFLK----KN 139
Query: 756 KESEINVLKNQSSDNV------------TKQITELKTQYEQEIKK-LEDTLVQERQEYED 802
E E+ L++Q V TK + E++ QYE+ +K ++ + + E+
Sbjct: 140 HEEEVRELQSQIQGQVNVEMDAARKLDLTKALAEIRAQYEELAEKNRQEAEEWYKSKLEE 199
Query: 803 LT 804
L
Sbjct: 200 LQ 201
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 29.8 bits (67), Expect = 7.7
Identities = 29/166 (17%), Positives = 73/166 (43%), Gaps = 12/166 (7%)
Query: 636 KKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQR 695
KK I++ +I + E + E G R + + RE + K+ ++
Sbjct: 51 KKSKGRGIVKGDIEIEKDEGKKKTYVEI--TFENNKGKLKLRLIEESRELTKKKGKKVKK 108
Query: 696 NAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKT 755
+ ++ +++ + ++E LKS + + + Q + L+ ++++ EKEL+
Sbjct: 109 SILEIVEIDELQEFIDELLKSDKEILPLLLYLGQERLEELKFKRKEKKERLEELEKELEE 168
Query: 756 KESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYE 801
E E ++L+ + + ++E+++L++ L + +E E
Sbjct: 169 LEDEKDLLEKL----------LEEKEKKKELEELKEELEELLEELE 204
>gnl|CDD|110602 pfam01611, Filo_glycop, Filovirus glycoprotein. This family
includes an extracellular region from the envelope
glycoprotein of Ebola and Marburg viruses. This region
is also produced as a separate transcript that gives
rise to a non-structural, secreted glycoprotein, which
is produced in large amounts and has an unknown
function. Processing of this protein may be involved in
viral pathogenicity.
Length = 364
Score = 30.2 bits (68), Expect = 7.7
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 109 KKNEGRSWTSSTNLSSVSSSNDSQNSSRRPPPEDSSNEDDDYRSTKYVVRRRTSHLPATS 168
KKN + SST LS+ S S + N SR+ E N RTS P+T+
Sbjct: 280 KKNVTKQGQSSTCLSTPSLSPRTTNHSRQAVTELDKN--------------RTSLQPSTN 325
Query: 169 TSSSNAEPSTSSNTTRTRS 187
+++ + +TS + T+S
Sbjct: 326 NTTTISTNNTSKHNFSTQS 344
>gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional.
Length = 234
Score = 29.9 bits (66), Expect = 8.0
Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 28/153 (18%)
Query: 89 TVSSPSLSSWTSASTIRESEKKNEGRSWTSSTNLSSVSSSNDSQNSSRRPPPEDSSNEDD 148
T + + S S + +S + ++T + S +++ + + P +SN
Sbjct: 40 TTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNAST 99
Query: 149 DYRSTKYVVRRRTSHLPATSTSSSNAEPSTSSNTTRTRSSASPRLKTPDKPSKADVDFIL 208
+TK + T AT + + TS+ TTR+ S+ S
Sbjct: 100 INVTTKVTAQNIT----ATEAGTGTSTGVTSNVTTRSSSTTS------------------ 137
Query: 209 QVKDAKKTRRKENLETDTESLAGTETTDTTETT 241
T R N T +L+ T++ T+TT
Sbjct: 138 ------ATTRITNATTLAPTLSSKGTSNATKTT 164
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 28.7 bits (65), Expect = 8.1
Identities = 23/94 (24%), Positives = 46/94 (48%)
Query: 677 RELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLE 736
RE+ +++ L ++E +R E + + E + EE L+ + K + + + K E
Sbjct: 7 REMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAE 66
Query: 737 KSLTAEQKQKALKEKELKTKESEINVLKNQSSDN 770
K E+K + KE+E+K ++E+ LK +
Sbjct: 67 KKAEEEKKLRKEKEEEIKELKAELEELKAEIEKL 100
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 30.2 bits (68), Expect = 8.2
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 37/210 (17%)
Query: 606 KVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERAT 665
K R T ++ GE+E LK ++ L+A++ + L + I +L+ I E A
Sbjct: 422 KKREAVKTPVRELEGEVEKLKEQI--LKAKESSSKPSELALNEMIEKLKKEIDLEYTEA- 478
Query: 666 DLSVKAGSAASRELNQLREELTQLKKEAQRN----AEKVTKLERD-KTSLEE-----NLK 715
V A R N LREE ++ + Q EK+ KL+ + L +LK
Sbjct: 479 ---VIAMGLQERLEN-LREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLK 534
Query: 716 SK-----ETQMTKTISDLQTKCSTLEKSLT-----------AEQKQKALKEKELKTKESE 759
K E K +S+ ++K L+ + ++K +ALK + + S
Sbjct: 535 YKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASS 594
Query: 760 INVLKNQSSDNVTKQITELKTQYEQEIKKL 789
+ L D++ +++ ++K + E E+ +
Sbjct: 595 GDEL----DDDLKEKVEKMKKEIELELAGV 620
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 30.3 bits (69), Expect = 8.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 361 LMDENEEMKKELRYLEEEMDEMQDHFRE 388
+DE E+++K +R +++E+D + F E
Sbjct: 869 TLDEEEKIEKLIRRIKKEIDRRKKLFSE 896
>gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869). This
bacterial family of proteins has no known function.
Length = 131
Score = 28.7 bits (65), Expect = 8.7
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 31/113 (27%)
Query: 704 ERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVL 763
ER K L+ L+ + TQ L+ + LE Q QKA+KE ++ +
Sbjct: 15 ERWKEELQAELQEQLTQ-------LEQELQQLE-----FQGQKAIKEIRKQSAQ------ 56
Query: 764 KNQSSDNVTKQITELKTQYEQEIKKLED---TLVQERQEYEDLTNRYDILEGE 813
QI +++ Q EQE K + L+ + ++ ++L ++ +G+
Sbjct: 57 ----------QIEQIQQQVEQERAKRLEQKNQLLFQIEQVQELPLGSEVKQGQ 99
>gnl|CDD|226396 COG3879, COG3879, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 247
Score = 29.7 bits (67), Expect = 8.7
Identities = 24/102 (23%), Positives = 33/102 (32%), Gaps = 17/102 (16%)
Query: 254 LLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDL 313
L L + + + R + EL LQ++VN L E EDL
Sbjct: 25 SLAMLLAGVMLAAVFQTSKGESVRRARDLDLVK--------ELRSLQKKVNTLAAEVEDL 76
Query: 314 NDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAE 355
E K S+R L + A E E LR +
Sbjct: 77 --ENKLDSVRRSVLTDD-------AALEDRLEKLRMLAGSVP 109
>gnl|CDD|227780 COG5493, COG5493, Uncharacterized conserved protein containing a
coiled-coil domain [Function unknown].
Length = 231
Score = 29.8 bits (67), Expect = 8.8
Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 24/130 (18%)
Query: 267 EKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRE 326
+++ E +IL+ L + L KL +D+ + +K R +E
Sbjct: 8 KRVLLENPEILVDVLTQRPEILYEV----LAKLTPWQQLA--TKQDVEELRKETEQRQKE 61
Query: 327 LETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEM---- 382
L E +K A + + + L+ +E K++++ LE + +
Sbjct: 62 LADEKLEVRKQKATKEDLKLLQ----------RFQEEEFRATKEDIKRLETIITGLGARW 111
Query: 383 ----QDHFRE 388
+D FR+
Sbjct: 112 GILSEDAFRQ 121
>gnl|CDD|224264 COG1345, FliD, Flagellar capping protein [Cell motility and
secretion].
Length = 483
Score = 30.1 bits (68), Expect = 8.9
Identities = 17/122 (13%), Positives = 45/122 (36%)
Query: 624 SLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLR 683
+ S LE ++ K + + E + + ++ A L S + +
Sbjct: 362 TTDSLDGTLEIDEAKLKAALNEDPDSVREFFGGDGKDTGIAKTLGEGLNSLLAVTGGIIT 421
Query: 684 EELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQ 743
L K+ + + + L++ + EE K++ + ++ + ++ S L + L +
Sbjct: 422 GRTDSLNKQIKSLDKDIKSLDKRLEAAEERYKTQFNTLDDMMTQMNSQSSYLTQQLVSVS 481
Query: 744 KQ 745
Sbjct: 482 NS 483
>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 365
Score = 30.1 bits (68), Expect = 9.0
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 22/70 (31%)
Query: 1226 EREEQQRLLQETSTLARDLR----QTLF---------EVERERDKERLEAKRRFDQMKKT 1272
E EE+ R+ ARDL Q+L + + D E+ A+ +++K
Sbjct: 167 ELEERNRI-------ARDLHDSVGQSLTAISMLLALLLLLADEDAEK--AQEELKEIEKL 217
Query: 1273 TEEEQEECRR 1282
E +E R
Sbjct: 218 LREALQEVRA 227
>gnl|CDD|220303 pfam09592, DUF2031, Protein of unknown function (DUF2031). This
protein is expressed in Plasmodium; its function is
unknown. It may be the product of gene family pyst-b.
Length = 228
Score = 29.6 bits (67), Expect = 9.1
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 17/94 (18%)
Query: 759 EINVLKNQSSDNVTKQITELKTQYEQE---IKKLEDTLVQERQEYEDLTNRYDILEGEHV 815
E+ +K + + K+ EL Q Q+ IKK E++ V E ++++ L N + LE E+
Sbjct: 120 ELEEVKKELDN---KRNGELAIQPIQDKRIIKKDENSSVSEHEDFKQLENEENFLETEYN 176
Query: 816 DIKASLVKEKENNHGRLQQTQKGMWISKRPWSKK 849
+I +S NN+ +L+ +K + KK
Sbjct: 177 EITSS------NNYKKLKINRK-----LKKAEKK 199
>gnl|CDD|236923 PRK11530, PRK11530, hypothetical protein; Provisional.
Length = 183
Score = 29.2 bits (66), Expect = 9.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 671 AGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQ------MTKT 724
AG A E+ Q+ ++ L +E + ++ +E+ L + T KT
Sbjct: 18 AGCAQQSEVRQMHNSVSTLNQEMTQLTQQAVAIEQQNR-----LNANSTSGVYLLPAAKT 72
Query: 725 ISDLQTKCSTLEKSLT 740
+ L+++ TL SL+
Sbjct: 73 PARLESQIGTLRMSLS 88
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 30.2 bits (68), Expect = 9.2
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 118 SSTNLSSVSSSNDSQNSSRRPPPEDSSNEDDDYRSTKYVVRRRTSHLPATSTSSSNAEPS 177
S + L Q RR S +ED+ R +K R R + S+SSS A+P
Sbjct: 89 SPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERPSK---RPR---SDSISSSSSPAKPP 142
Query: 178 TSS 180
+
Sbjct: 143 EAC 145
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 30.3 bits (69), Expect = 9.3
Identities = 24/146 (16%), Positives = 57/146 (39%), Gaps = 7/146 (4%)
Query: 342 REAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKEL 401
++ L+ + +E +E +KE+ L++++ E++ + +A+ ++ +
Sbjct: 751 ESSDILKVPPEQLPETVKRFFEEWKEQRKEIERLKKKLAELKIYELISEAERIGGVEVIV 810
Query: 402 EQTAKNCRILSFKLRKSERRSEQLEAEKLEAEK--KCREVC--GGMEGVNKVERIQALEK 457
E + L +E+ +E+ L + R V G GV+ E ++ + K
Sbjct: 811 ELVDADMDEL---QEIAEKLAEKGLVVVLVSGGGGNGRVVISSGEKAGVDAGELVREIAK 867
Query: 458 ELKLANETAEKLQKDLKEATDKLERA 483
EL L + ++ A
Sbjct: 868 ELGGGGGGKPDLAQGGGPDDLNVDEA 893
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 30.0 bits (68), Expect = 9.5
Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 25/185 (13%)
Query: 258 ELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEK 317
++N++ K E + R K +L + EL KL + ++LK +E+ D
Sbjct: 919 LIENLEFKTELIARLK-KLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLL 977
Query: 318 KSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEE 377
K ++ VRE +E K AE + + K+L+ L
Sbjct: 978 KKSTILVREGNK------------ANSELKNFKKELAELSKQYGALQES--TKQLKELPV 1023
Query: 378 EMDEMQDHFRED-QADEYSSLKK---------ELEQTAKNCRILSFKLRKSERRSEQLEA 427
E+ E+Q + S+ K LE R + KLR+ + +
Sbjct: 1024 EVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQL 1083
Query: 428 EKLEA 432
+LE+
Sbjct: 1084 YQLES 1088
>gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain.
The small mechanosensitive channel, MscS, is a part of
the turgor-driven solute efflux system that protects
bacteria from lysis in the event of osmotic shock. The
MscS protein alone is sufficient to form a functional
mechanosensitive channel gated directly by tension in
the lipid bilayer. The MscS proteins are heptamers of
three transmembrane subunits with seven converging M3
domains, and this MscS_porin is towards the N-terminal
of the molecules. The high concentration of negative
charges at the extracellular entrance of the pore helps
select the cations for efflux.
Length = 239
Score = 29.5 bits (67), Expect = 9.7
Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 10/159 (6%)
Query: 655 ASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENL 714
I + +++A K A +EL +LR+EL LKK ++ L + LE+ L
Sbjct: 31 DEIDKSKQKADQYQ-KQIDDAPKELRELRQELEALKKTDAPVFPELANL--SLSQLEQRL 87
Query: 715 KSKETQMT---KTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNV 771
+Q+ + + ++ L+ Q+Q + E + + EI S
Sbjct: 88 AQTLSQLQELQEQLQQENSQLIELQTRPERAQQQLS----EARRRLQEIRNRLQALSPGG 143
Query: 772 TKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDIL 810
T +T + E+ L+ + + E NR ++L
Sbjct: 144 TPLAQAQRTLLQAELAALKAQIEELELELLSNNNRQELL 182
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 30.0 bits (68), Expect = 10.0
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 735 LEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLV 794
+EK + +AL EL+ K E ++ ++ +I ELK + E +
Sbjct: 24 VEKIKAEYPELEALSNDELRAKTDEFKQYIKEAVADIDAKIEELKAEAI------ESLDI 77
Query: 795 QERQEYEDLTNRYDILEGEHVDI 817
ER ED+ + D LE E +I
Sbjct: 78 DER---EDIYAQIDKLEKEAYEI 97
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.305 0.121 0.318
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 61,313,779
Number of extensions: 6008600
Number of successful extensions: 12372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9467
Number of HSP's successfully gapped: 1683
Length of query: 1286
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1178
Effective length of database: 6,147,370
Effective search space: 7241601860
Effective search space used: 7241601860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 65 (28.9 bits)