RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12517
(1286 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 91.1 bits (226), Expect = 1e-18
Identities = 55/288 (19%), Positives = 114/288 (39%), Gaps = 13/288 (4%)
Query: 558 MRDLQDSMEREADLR---EQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTE 614
LQ+ ++ E +L E++R + Q L + + + + E+ + E
Sbjct: 894 KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM----EARIEEEEERSQQLQAE 949
Query: 615 KTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSA 674
K ++ ++ L+ +L EA ++K + + + KI ++E I ++ L+ K
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT-KERKL 1008
Query: 675 ASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMT---KTISDLQTK 731
++ L L + +++A+ + K E + LE LK +E K L+ +
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Query: 732 CSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKT--QYEQEIKKL 789
S L + + Q Q A + +L KE E+ + D +++ LK + E I L
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128
Query: 790 EDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQK 837
++ L E+ + L E +K L + + +
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
Score = 87.6 bits (217), Expect = 2e-17
Identities = 73/408 (17%), Positives = 148/408 (36%), Gaps = 77/408 (18%)
Query: 301 QRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAA-EREAEALRTKLAAAEGLCE 359
+V + E + ++E + R ++ E E ++ + E L+ KL A L
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 360 ELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSE 419
E + + + + LEE + EM+ E++ + L+ E ++ + L +L + E
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEAR-IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 420 RRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDK 479
++L+ EK+ A+ K +++ + ++ L KE KL E L +L E +K
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDIL--IMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Query: 480 LERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEK 539
K+L + +K E
Sbjct: 1027 A---------------------------KNLTKLKNKHES-------------------- 1039
Query: 540 VSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLV 599
++ +L+ +++E R++L E+ ++L + D
Sbjct: 1040 -----------------MISELEVRLKKEEKSRQEL----EKIKRKLEGESSDLHE---- 1074
Query: 600 QYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIRE 659
Q +++ AE + + EL++ ++L ++K I E S I+ L+ +
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134
Query: 660 ERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDK 707
E+ A + + K S EL L+ EL E +D
Sbjct: 1135 EK-AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181
Score = 84.9 bits (210), Expect = 1e-16
Identities = 68/408 (16%), Positives = 151/408 (37%), Gaps = 84/408 (20%)
Query: 387 REDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGV 446
Q +E + +EL++T + + +L++ E++ QL EK ++K +
Sbjct: 852 VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA-------- 903
Query: 447 NKVERIQALEKELKLANETAEK--LQKDLKEATDKLERANGGKPPKLGALPKTPSVETAE 504
E E E A+K L++ L E ++E E
Sbjct: 904 ---ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE--------------------E 940
Query: 505 KLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDS 564
+ + L+ K+++ M DL++
Sbjct: 941 ERSQQLQAEKKKMQQQ-------------------------------------MLDLEEQ 963
Query: 565 MEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELES 624
+E E R++L+ + ++ + L +E + + E+ + +
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKKMED--------DILIMEDQNNKLTKERKLLEERVSD 1015
Query: 625 LKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLRE 684
L + L+ E + K + S I++LE +++E + +L K E + L E
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE-KIKRKLEGESSDLHE 1074
Query: 685 ELTQLKKEAQRNAEKVTKLERDKTSLE---ENLKSKETQMTKTISDLQTKCSTLEKSLTA 741
++ +L+ + ++ K E + + E+ S++ K I +L++ S L++ L +
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134
Query: 742 EQKQKALKEKELKTKESEINVLKNQ--SSDNVTKQITELKTQYEQEIK 787
E+ + EK+ + E+ LK + + + T EL+ ++
Sbjct: 1135 EKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 84.5 bits (209), Expect = 2e-16
Identities = 55/289 (19%), Positives = 111/289 (38%), Gaps = 21/289 (7%)
Query: 608 RAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDL 667
E EL+ K + EAE K+ E + + L+ ++ E E +
Sbjct: 852 VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEA 911
Query: 668 SVKAGSAASREL---NQLREELTQLKKEAQRNAEKV---TKLERDKTSLEENLKSKETQM 721
A+++ L E ++++E +R+ + K+++ LEE L+ +E
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971
Query: 722 TKTISD---LQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKN--QSSDNVTKQIT 776
K + K +E + + Q KE K E ++ L + K +T
Sbjct: 972 QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031
Query: 777 ELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQ 836
+LK ++E I +LE L +E + ++L LEGE D+ + + + Q
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091
Query: 837 KGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKR 885
K K+ ++ + ++E S+ ++ L ++L+
Sbjct: 1092 K----------KEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130
Score = 78.3 bits (193), Expect = 1e-14
Identities = 41/277 (14%), Positives = 109/277 (39%), Gaps = 33/277 (11%)
Query: 256 RHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTA------SELLKLQQRVNELKTE 309
+ AK ++LE + + R+ E + + A ++L L++++ E +
Sbjct: 912 EEMRVRLAAKKQELEEILHE-MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 310 NEDLNDEKKSLSLRVRELETEAAAFKKSNAA-EREAEALRTKLAAAEGLCEELMDENEEM 368
+ L EK + +++++E + + N +E + L +++ E ++ + +
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Query: 369 KKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAE 428
K E + E++ ++++ L+K + L ++ + + + +L+A+
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEK-SRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089
Query: 429 KLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDL---KEATDKLERANG 485
+ E++ + +E ++ + K+++ LQ+DL K A +K E+
Sbjct: 1090 LAKKEEELQAALARLE--DETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK- 1146
Query: 486 GKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANG 522
L ++L+ +LE
Sbjct: 1147 ------------------RDLSEELEALKTELEDTLD 1165
Score = 62.2 bits (151), Expect = 9e-10
Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 32/229 (13%)
Query: 247 EYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNEL 306
+ D I ++ + + + + + LE SD L LA E T K + ++EL
Sbjct: 987 KMEDDILIMEDQNNKLTKERKLLEERVSD-LTTNLAEEEEKAKNLTK-LKNKHESMISEL 1044
Query: 307 KTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENE 366
+ + ++ L R+LE E + EL +
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGE--------------------SSDLHEQIAELQAQIA 1084
Query: 367 EMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLE 426
E+K +L EEE+ ++ + + ++ K++ + + L L + + E
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETS-QKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143
Query: 427 AEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKE 475
+K + ++ + ++ E KD +
Sbjct: 1144 KQKRDLSEELEAL---------KTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 57.5 bits (139), Expect = 3e-08
Identities = 36/194 (18%), Positives = 79/194 (40%), Gaps = 15/194 (7%)
Query: 208 LQVKDAKKTRRKENLETDTESLAGT--ETTDTTETTLVNDNEYSDQIDLLRHELDNMKAK 265
++ ++ K T+ ++ LE L E + + N++ I L L +
Sbjct: 995 MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054
Query: 266 CEKLEREKSDI------LLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKS 319
++LE+ K + L ++A ++ ++ ++L K ++ + ED +K +
Sbjct: 1055 RQELEKIKRKLEGESSDLHEQIAELQAQIAEL-KAQLAKKEEELQAALARLEDETSQKNN 1113
Query: 320 LSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEM 379
++RELE+ + + + E+ + AE +L +E E +K EL +
Sbjct: 1114 ALKKIRELESHIS------DLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167
Query: 380 DEMQDHFREDQADE 393
Q+ D D+
Sbjct: 1168 ATQQELRGSDYKDD 1181
Score = 46.4 bits (110), Expect = 7e-05
Identities = 43/289 (14%), Positives = 103/289 (35%), Gaps = 38/289 (13%)
Query: 991 DRLEAEEKARKSDVAAVKMRYDKRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTI 1050
R+E EE+ + A K + ++ L ++L+ + + + E+ T ++ + I
Sbjct: 934 ARIEEEEERSQQLQAE-KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI 992
Query: 1051 ADLKASHNSPTTSRLSGGSTHSEVITTSDRKKKGLFGKLKQLTRSSHSVDRDSDTSQFDP 1110
++ +N T R S++ T +++ K K LT+ + +
Sbjct: 993 LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE----KAKNLTKLKNKHESMIS------ 1042
Query: 1111 GSDTSLDDSRNLKDRITGIFKKSGSTSRANSVDDLKAVITSLEQQISCMEDELSESRLET 1170
L+ R+ + LE+ +E E S+ +
Sbjct: 1043 ----------ELEVRL----------------KKEEKSRQELEKIKRKLEGESSDLHEQI 1076
Query: 1171 SRLKTELVSEKSAAEIKLSELTSKVNELEEDRLLSSGRTNKIPGLKTRMELAWHKEREEQ 1230
+ L+ ++ K+ K EL + + LE++ + KI L++ + E+
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136
Query: 1231 QRLLQETSTLARDLRQTLFEVERERDKERLEAKRRFDQMKKTTEEEQEE 1279
+ RDL + L ++ E + + + +++ ++
Sbjct: 1137 AARNKAEKQK-RDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 39.0 bits (91), Expect = 0.012
Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 23/164 (14%)
Query: 1139 ANSVDDLKAVITSLEQQISCMEDELSESRLETSRLKTELVSEKSAAEIKLSELTSKVNEL 1198
L+A ++QQ+ +L E E + +L EK A+ K+ ++ + +
Sbjct: 940 EERSQQLQAEKKKMQQQML----DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 1199 EEDRLLSSGRTNKIPGLKTRME--LAWHKEREEQQ--------RLLQETSTLARDL---- 1244
E+ + T + L+ R+ E EE+ + S L L
Sbjct: 996 EDQN---NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Query: 1245 --RQTLFEVERERDKERLEAKRRFDQMKKTTEEEQEECRRKLTE 1286
RQ L +++R+ + E + + +++ E + + +K E
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 80.3 bits (197), Expect = 3e-15
Identities = 101/653 (15%), Positives = 194/653 (29%), Gaps = 202/653 (30%)
Query: 195 TPDKP----SKADVDFILQVKDAK-KTRR-----------------KENLETDTESLAG- 231
D P SK ++D I+ KDA T R +E L + + L
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 232 --TETTDTTETT---------LVNDNEYSDQIDLLRHEL-DNMKAKCEKLEREKSDILLR 279
TE + T L NDN+ + ++ R + ++ +L K ++L+
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK-NVLID 156
Query: 280 RLASMETTTSKTT-ASELL---KLQQR---------VNELKTENEDLNDEKKSLSLRVRE 326
+ + KT A ++ K+Q + + + L + + L ++
Sbjct: 157 ---GV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLLYQI-- 209
Query: 327 LETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEE-------- 378
N R + KL ++ ELR L +
Sbjct: 210 ---------DPNWTSRSDHSSNIKL------------RIHSIQAELRRLLKSKPYENCLL 248
Query: 379 -MDEMQDHFREDQADEYSSLKKELEQTAKNCRIL--SFKLRKSERRSEQLEAEKLEAEKK 435
+ +Q+ K +C+IL + R +Q+ + L A
Sbjct: 249 VLLNVQN-------------AKAWNAFNLSCKILLTT--------RFKQV-TDFLSAATT 286
Query: 436 CREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKL-ERANGGKPPKLGAL 494
++ L + E L K L L P +L +
Sbjct: 287 TH--------ISLDHHSMTLTPD-----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 495 PKTPSVETA----------EKLQKDLKEATDKLERANGGKPP-------KLGALPKTPSV 537
++ A +KL ++ + + LE P +L P S
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE------PAEYRKMFDRLSVFPP--SA 385
Query: 538 EKVSRETLTR---GGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARD-- 592
+ L+ + D V++ + + + + + +Q +E + S+ +
Sbjct: 386 -HIPTILLSLIWFDVIKSDVMVVV----NKLHKYSLVEKQ---PKESTI-SIPSIYLELK 436
Query: 593 -------AFHPNLVQYLQIEKVRAESSTEKTQITGELES-----LKSKLSALEAEKKKFE 640
A H ++V + I K + S LK + E+
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK---NIEHPERMTLF 493
Query: 641 TDI------LEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQ 694
+ LE+ KI R + A + L QL+ +
Sbjct: 494 RMVFLDFRFLEQ--KI------------RHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 695 RNAEKVTKLERDKTSLEENL-KSKETQMTKTISDLQTKCSTLEKSLTAEQKQK 746
+ V + +EENL SK T + + L + + + +Q Q+
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIA--LMAEDEAIFEE-AHKQVQR 589
Score = 77.2 bits (189), Expect = 3e-14
Identities = 78/616 (12%), Positives = 181/616 (29%), Gaps = 134/616 (21%)
Query: 374 YLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRK--SERRSEQLEAEKLE 431
+++ E E Q +++ + + + C+ + + S+ + + K +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFD-----CKDVQDMPKSILSKEEIDHIIMSK-D 59
Query: 432 AEKKCREVCGGME--GVNKVERI--QALEKEL-----KLANETAEKLQKDLKEATDKLER 482
A + + V++ + L + E + + ++ +R
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP-SMMTRMYIEQRDR 118
Query: 483 ANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANG----GKPPKLGALPKTPSVE 538
K +V + K L++A +L A G LG+ KT
Sbjct: 119 LYNDNQV----FAKY-NVSRLQPYLK-LRQALLELRPAKNVLIDG---VLGS-GKTWVAL 168
Query: 539 KVSRETLTRG-----------GSQEDPTVLMRDLQ--------------DSME----REA 569
V + + P ++ LQ D R
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 570 DLREQLR-FAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSK 628
++ +LR + + Y+ V + + + + +T Q+T L + +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTT 287
Query: 629 LSALEAEKKKFETD-ILEKSSKITQLEASIREERERATDLS--VKAGSAASRELNQLREE 685
+L+ D + K L+ ++ + + A S +R+
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPREVLTTNPRRLSIIAES-----IRDG 340
Query: 686 LTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQ---------------MTKTISDLQT 730
L N +K+T + ++SL L+ E + T +S +
Sbjct: 341 LATWDNWKHVNCDKLTTII--ESSL-NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 731 KCSTLEKSLTAEQ-KQKALKEKELKTKESEIN----VLKNQSSDNVT--KQITELKTQYE 783
+ + + + +L EK+ K I LK + + + I + Y
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD---HYN 454
Query: 784 QEIK-KLEDTLVQERQEY-----------EDLTNRYDILEGEHVD---IKASLVKEKENN 828
+D + +Y + R + +D ++ + +
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 829 HGR------LQQTQK-GMWISKRPWSKKRKITT--------EPSVAKEEHSKSYQLQTTL 873
+ LQQ + +I +R + E ++ +++ L+ L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL--LRIAL 572
Query: 874 QRLTE-VAAELKRASQ 888
E + E + Q
Sbjct: 573 MAEDEAIFEEAHKQVQ 588
Score = 71.0 bits (173), Expect = 2e-12
Identities = 90/642 (14%), Positives = 194/642 (30%), Gaps = 170/642 (26%)
Query: 303 VNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELM 362
E + + +D+ L AF + + + ++ L+ E + ++
Sbjct: 11 TGEHQYQYKDI-------------LSVFEDAFVDNFDCKDVQDMPKSILSKEE--IDHII 55
Query: 363 DENEEMKKELRY---LEEEMDEMQDHFREDQ-ADEY----SSLKKELEQTAKNCRILSFK 414
+ + LR L + +EM F E+ Y S +K E Q + R+ +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 415 LRKSER-----------RSEQLEA--EKLEAEKKCREVC-GGMEGVNK-VERIQALEKEL 459
+ R + + L + + V G+ G K
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---------- 165
Query: 460 KLANETAEKLQKDLKEATDKLERANGGKP--PKLGALPKTPSVETAEKLQKDLKEATDKL 517
+A + + K++ K L +V E LQK L +
Sbjct: 166 -VALDVC---------LSYKVQCKMDFKIFWLNLKNCNSPETV--LEMLQKLLYQIDPNW 213
Query: 518 -ERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVL--MRDLQDSMEREA-DLRE 573
R++ KL + S++ R L S+ L + ++Q++ A +L
Sbjct: 214 TSRSDHSSNIKL----RIHSIQAELRRLLK---SKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 574 QL----RFAE------EERYQRLYSV-ARDAFHPN-----LVQYLQI------------- 604
++ RF + + P+ L++YL
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 605 --------EKVRAESST----EKTQITGELESLKSKLSALEAE--KKKFET-DILEKSSK 649
E +R +T + ++S L+ LE +K F+ + S+
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 650 ITQ--LE----ASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKL 703
I L I+ + + K S ++ + + + E + E L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 704 ERDKTSLEENLKSKETQMTKTISDLQTK---CSTLEKSL-TAEQKQKALKEKEL------ 753
R S+ ++ +T + + S + L E ++ + +
Sbjct: 446 HR---SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 754 ---KTKESEINVLKNQSSDNV-------TKQITELKTQYEQEIKKLEDTLVQERQEYEDL 803
K + + S N I + +YE+ + + D L + E+
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK----IEE- 557
Query: 804 TNRYDILEGEHVDI--------KASLVKEKENNHGRLQQTQK 837
+++ ++ D+ ++ +E +Q Q+
Sbjct: 558 ----NLICSKYTDLLRIALMAEDEAIFEEAH------KQVQR 589
Score = 69.1 bits (168), Expect = 8e-12
Identities = 90/671 (13%), Positives = 182/671 (27%), Gaps = 211/671 (31%)
Query: 639 FETDILEKSSK-ITQ--LEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQR 695
FET + K I +A + + K + + +EE+ +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVD-------NFDCKDVQDMPKSILS-KEEIDHIIMSKDA 60
Query: 696 NAEKVTKLERDKTSLEENLKSKETQMTKTISD--LQTKCSTLEKSLTAEQKQKALKEKEL 753
V+ R L L SK+ +M + + L+ L + EQ+Q ++ +
Sbjct: 61 ----VSGTLR----LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 754 KTKESEINVLKNQSS----DNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDI 809
+ + L N + NV++ Q KL L++ R + +
Sbjct: 113 ---IEQRDRLYNDNQVFAKYNVSR---------LQPYLKLRQALLELRPA------KNVL 154
Query: 810 LEGEHVDI---KASLVKEKENNHGRLQQTQKGM-WISKRPWSKKRKITTEPSVAKEEHSK 865
++G + K + + ++ + + W++ + + +
Sbjct: 155 IDG---VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE----------- 200
Query: 866 SYQLQTTLQRLTEVAAELKRASQLPPTPPTTEESQNRIRRAAFAAKKSVSTESDHTGESS 925
LQ L ++ R+ Q +RR +K
Sbjct: 201 --MLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELRRL-LKSKP------------- 242
Query: 926 SRALHRKGSLYRKSLSLEQTSQL----AQEENIWKMTDDNDSSL--TSFQSIDDAYENVK 979
Y L L Q W + + L T F+ + D
Sbjct: 243 ----------YENCL-------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 980 YTNYGRRETSMDRLEAEEKARKSDVAAVKMRYDKRATALSDELKAIQGQVLRFKRERDTF 1039
T + DE+K++ + L +
Sbjct: 286 TT----HISLDHHSMTLTP---------------------DEVKSLLLKYLDCR------ 314
Query: 1040 KHMLEGAQKTIADLK--ASHNSPTTSRLSGGSTHSEVITTSDRKKKGLFGKLKQLTRSSH 1097
DL +P + S + + T D K KL + SS
Sbjct: 315 ----------PQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESS- 362
Query: 1098 SVDRDSDTSQFDPGSDTSLDDSRNLKDRITGIFKKSGSTSRANSVDDLK---AVITSLEQ 1154
++ +P + R + DR+ +F +++ +
Sbjct: 363 -LN------VLEP------AEYRKMFDRL-SVFP-----------PSAHIPTILLSLIWF 397
Query: 1155 QISCMEDELSESRLETSRLKTELVSEKSAAEIKLS------ELTSKVNE--------LEE 1200
+ + + ++L L EK E +S EL K+ ++
Sbjct: 398 DVIKSDVMVVVNKLHKYSL-----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 1201 DRLLSSGRTNKIPGLKTRM----ELAWHKEREEQQRLLQETSTLARDLRQTLFEVERERD 1256
+ + ++ + + H + E + + D R F
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---F------- 502
Query: 1257 KERLEAKRRFD 1267
LE K R D
Sbjct: 503 ---LEQKIRHD 510
Score = 63.7 bits (154), Expect = 4e-10
Identities = 54/415 (13%), Positives = 125/415 (30%), Gaps = 111/415 (26%)
Query: 937 RKSLSLEQTSQLAQEEN--------IWKMTDDNDSSLTSFQSIDDAYENVKYTNYG---- 984
+ LS E+ + ++ W + + + F +++ NY
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLR----INYKFLMS 96
Query: 985 -----RRETSMDRLEAEEKARK--SDVAAVKMRYDKRATALSDELKAIQGQVLRFKRERD 1037
+R+ SM E+ + +D R ++ +L + ++
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL----QPYLKLRQALLELRPAKN 152
Query: 1038 TFKH-MLEGAQKTIADLKASHNSPTTSRLSGGSTHSEV--ITTSDRKKKGLFGKLKQLTR 1094
+L G+ KT L + ++ + + + L+ L +
Sbjct: 153 VLIDGVL-GSGKTWVALDVCLSYKVQCKMDFK-----IFWLNLKNCNSPETV--LEMLQK 204
Query: 1095 SSHSVDRDSDTSQFDPGSDTSLDDSRNLKDRITGIFKKSGSTSRANS---VDDL--KAVI 1149
+ +D + TS+ D S+ L +++ + + K S N + ++
Sbjct: 205 LLYQIDPN-WTSRSDHSSNIKL-RIHSIQAELRRLLK---SKPYENCLLVLLNVQNAKAW 259
Query: 1150 TSLEQQISCMEDELSESR-LETSRLK--TELVSEKSAAEIKLSELTSKVNELEEDRLLSS 1206
+ +SC + L T+R K T+ +S + I L + + E LL
Sbjct: 260 NAFN--LSC--------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 1207 GRTNKIPGLKTRMELAWHKEREEQQRLLQETSTLARDLRQTL--FEVERERDKERL---- 1260
+ L RE + S +A +R L ++ + + ++L
Sbjct: 310 YLDCRPQDLP----------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 1261 ----------EAKRRFDQM-------------------KKTTEEEQE---ECRRK 1283
E ++ FD++ + + +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Score = 48.7 bits (115), Expect = 1e-05
Identities = 79/541 (14%), Positives = 155/541 (28%), Gaps = 140/541 (25%)
Query: 23 RWPTRCK---RCFRDYKEHGNR-NRDNDL-------RKDDFTVSSPSLS----------- 60
T + R Y E +R DN + R + +L
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 61 -------SWTSASTIRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRESEKKNEG 113
+W + YK K DF + W + E E
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQ---------CKMDFKI------FWLNLKNCNSPETVLE- 200
Query: 114 RSWTSSTNLSSVSSSNDSQNSSRRPPPEDSSNEDDDY-----RSTKY-----VVR--RRT 161
L N + S + + +S Y V+ +
Sbjct: 201 ----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 162 SHLPA---------TSTSSSNAEPSTSSNTTRTRSSASPRLKTPDKPSKADVDFILQVKD 212
A T+ + +++ TT TPD+ K +L+ D
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VK---SLLLKYLD 312
Query: 213 AKKTR-RKENLETD--TESLAGTETTDTTETT----LVNDNEYSDQIDLLRHELD--NMK 263
+ +E L T+ S+ D T VN ++ + I+ + L+ +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 264 AKCEKLE--REKSDI---LLRRL-ASMETTTSKTTASELLK---LQQRVNELKTENEDLN 314
++L + I LL + + + ++L K ++++ E +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 315 DEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLC-EELMDENEEMKKELR 373
E K +LE E A + + + ++L+ +
Sbjct: 433 LELK------VKLENEYALHRS----------IVDHYNIPKTFDSDDLIPPYLDQ----- 471
Query: 374 YL---------EEEMDEMQDHFREDQADEYSSLKKELEQ--TAKNCR------ILSFK-- 414
Y E E FR D + L++++ TA N + K
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 415 ---LRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELK-LANETAEKLQ 470
+ ++ + E+L L+ K E + + + AL E + + E +++Q
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI--ALMAEDEAIFEEAHKQVQ 588
Query: 471 K 471
+
Sbjct: 589 R 589
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 74.0 bits (182), Expect = 3e-13
Identities = 42/242 (17%), Positives = 84/242 (34%), Gaps = 21/242 (8%)
Query: 565 MEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEK--VRAESSTEKTQITGEL 622
+ + + + +++ R + Y + K V + + EL
Sbjct: 855 RNKYQMMLREHKSIIIQKHVRGWLARV--------HYHRTLKAIVYLQCCYRRMMAKREL 906
Query: 623 ESLK---SKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASREL 679
+ LK + + E I++ KI + + E+ +L + S + +L
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITY-STETEKL 965
Query: 680 NQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSL 739
E L ++EA+ +V L+ + L + L Q ++ +
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH----QTQTEKKTIEEWADKYKHET 1021
Query: 740 TAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQE 799
EQ LKE+ K E L + D + ++ + +E K+LE L ER
Sbjct: 1022 --EQLVSELKEQNTLLKT-EKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
Query: 800 YE 801
Y+
Sbjct: 1079 YQ 1080
Score = 72.1 bits (177), Expect = 9e-13
Identities = 38/266 (14%), Positives = 90/266 (33%), Gaps = 16/266 (6%)
Query: 254 LLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDL 313
++R M+ L+ LLR + + +Q+ V
Sbjct: 830 VVRKRYQCMRDATIALQA-----LLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYH 884
Query: 314 NDEKKSLSLRVRELETEA-AAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKEL 372
K + L+ A KK R E + E +L + +E KE
Sbjct: 885 RTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY 944
Query: 373 RYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEA 432
+ L E+M+ ++ + ++ S + L + + + + ++ + +L E +
Sbjct: 945 KSLLEKMNNLEIT-YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003
Query: 433 EKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLG 492
+ + + + E + E + ++ LK ++L R + ++
Sbjct: 1004 QTEKKTI---------EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054
Query: 493 ALPKTPSVETAEKLQKDLKEATDKLE 518
+ VE ++L+ DL + + +
Sbjct: 1055 ETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 70.9 bits (174), Expect = 2e-12
Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 23/220 (10%)
Query: 630 SALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKA----------GSAASREL 679
+ L + + ++ + K ++ +R R A REL
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL 906
Query: 680 NQLREELTQLKKEAQRNAE---KVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLE 736
+L+ E +++ + + K+ +L+R + KS +M T+ L
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Query: 737 K---SLTAEQKQKALKEKELKTKESEINVLKNQSSD------NVTKQITELKTQYEQEIK 787
L +++ + + + EI L+ + + + + K + EQ +
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Query: 788 KLEDTLVQERQEYEDLTNRYDILEGEHVD-IKASLVKEKE 826
+L++ + E E+L R E + ++ LV+E +
Sbjct: 1027 ELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK 1066
Score = 58.6 bits (142), Expect = 1e-08
Identities = 51/336 (15%), Positives = 103/336 (30%), Gaps = 76/336 (22%)
Query: 263 KAKCEKLEREKSDILLRRLASMETTTSK----TTASELLKLQQRVNELKTENEDLNDEKK 318
+ L R ++ I++++ M + A+ L+ R ++ + + + E K
Sbjct: 807 RCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHK 866
Query: 319 SLSL---------RVRELETEAAAFK-KSNAAEREAEALRTKLAAAEGLCEELMDENEEM 368
S+ + RV T A + A+ KL E + +
Sbjct: 867 SIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGL 926
Query: 369 KKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAE 428
+ ++ L+ ++DE + LE T + RS+
Sbjct: 927 ENKIMQLQRKIDEQ-----NKEYKSLLEKMNNLEITYST--------ETEKLRSDVERLR 973
Query: 429 KLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKP 488
E E K N R+ +L++E+ + + Q + K
Sbjct: 974 MSEEEAK-----------NATNRVLSLQEEIAKLRKELHQTQTEKKTIE----------- 1011
Query: 489 PKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRG 548
E A+K + + ++ +L+ N ++ K +E L R
Sbjct: 1012 ------------EWADKYKHETEQLVSELKEQN--------------TLLKTEKEELNRR 1045
Query: 549 GSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQ 584
+ + + +E L L E RYQ
Sbjct: 1046 IHDQAKEITETMEKKLVEETKQLELDLN-DERLRYQ 1080
Score = 35.1 bits (81), Expect = 0.19
Identities = 17/118 (14%), Positives = 44/118 (37%), Gaps = 18/118 (15%)
Query: 1144 DLKAVITSLEQQISCMEDELSESRLETSRLKTELVSEKSAAEIKLSELTSKVNELEEDRL 1203
+ + SL+++I+ + EL +++ E ++ K E +SEL + L+ ++
Sbjct: 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEK- 1039
Query: 1204 LSSGRTNKIPGLKTRMELAWHKEREEQQRLLQETSTLARDLRQTLFEVERERDKERLE 1261
+I + K+ E+ + L+ + ++ R +
Sbjct: 1040 --EELNRRIHDQAKEITETMEKKLVEETKQLEL---------------DLNDERLRYQ 1080
Score = 31.6 bits (72), Expect = 1.9
Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 6/139 (4%)
Query: 1150 TSLEQQISCMEDELSESRLETSRLKTELVSEKSAAEIKLSELTSKVNELEEDRLLSSGRT 1209
+++ + + R + + + + A+ +L +L + +E + L G
Sbjct: 868 IIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLE 927
Query: 1210 NKIPGLKTRMEL--AWHKEREEQQRLLQETSTLARDLRQTLFEVERERDKERLEAKRRFD 1267
NKI L+ +++ +K E+ L+ T + L E +
Sbjct: 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEIT---YSTETEKLRSDVERLRMSEEE-AKNAT 983
Query: 1268 QMKKTTEEEQEECRRKLTE 1286
+ +EE + R++L +
Sbjct: 984 NRVLSLQEEIAKLRKELHQ 1002
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 5e-08
Identities = 100/632 (15%), Positives = 185/632 (29%), Gaps = 213/632 (33%)
Query: 209 QVKDA-KKTRRKENLETDTESLAGT-ETTDTTE---------TTLVNDNEYSDQIDLLRH 257
Q+++ K L TE A E T E ++LV ++ +L
Sbjct: 32 QLQEQFNKI-----LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 258 ELDNMKAKCEKLERE---KSDI--LLRRLASMETTTSKTTASELLK--LQQRVNELKTEN 310
L E +DI L +L E T+ EL+K + R+
Sbjct: 87 CLTE-------FENCYLEGNDIHALAAKLLQ-ENDTTLVKTKELIKNYITARI------- 131
Query: 311 EDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAA---EGLCEELMDENEE 367
++ R + ++ +A F+ A +L A +G ++
Sbjct: 132 ---------MAKRPFDKKSNSALFR---AVGEG----NAQLVAIFGGQGNTDD------- 168
Query: 368 MKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEA 427
Y +E++D + Y L +L ++ S +L
Sbjct: 169 ------YF----EELRDLY-----QTYHVLVGDL-------------IKFSAETLSELIR 200
Query: 428 EKLEAEKKCREVCGGMEGVNKVER----------------IQALEKELKLAN--ETAEKL 469
L+AEK + +E + I ++ LA+ TA+ L
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ----LAHYVVTAKLL 256
Query: 470 QKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQ-----KDLKEATDK-LE----- 518
E L+ GA + + TA + + + K +
Sbjct: 257 GFTPGELRSYLK----------GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 519 --RANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLM---RDL-QDSMEREADLR 572
R P +LP PS+ + S E ++ P+ M +L Q+ ++ +
Sbjct: 307 GVRCYEAYPNT--SLP--PSILEDSLE-----NNEGVPS-PMLSISNLTQEQVQDYVNKT 356
Query: 573 EQLRFAEEERYQRLY-SV--ARDAF----HP----NLVQYLQIEKVRAESSTEKTQITGE 621
++ + S+ P L L K +A S ++++I
Sbjct: 357 NS-HLPAGKQ---VEISLVNGAKNLVVSGPPQSLYGLNLTL--RKAKAPSGLDQSRIPF- 409
Query: 622 LESLKSKLSALEAEKKKFE-----------TDILEKSSKITQLEASIREERERATDLS-- 668
S+ K KF + +L +S + + A D+
Sbjct: 410 -----SE------RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 669 VKAGSAAS--RELNQ-LREELTQLKKEAQRNAEKVTKLE--------RDKTSLEENLKSK 717
V S R L+ + E + E T+ + S L +
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 718 ETQMT--KTISDLQTKCSTLEKSLTAEQ--KQ 745
T + I TL+ + + KQ
Sbjct: 519 NKDGTGVRVIV-----AGTLDINPDDDYGFKQ 545
Score = 56.6 bits (136), Expect = 6e-08
Identities = 57/346 (16%), Positives = 98/346 (28%), Gaps = 132/346 (38%)
Query: 368 MKKELRYLEEEMDEMQDHFRE--DQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQL 425
M +L + ++ ++AD + + T F +
Sbjct: 1631 MGMDLY-------KTSKAAQDVWNRADNH------FKDT------YGFSILDIVI----- 1666
Query: 426 EAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKL-ANETAEKLQKDLKEATDKLERAN 484
GG +G E A+ E + EK+ K++ E +
Sbjct: 1667 -----NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT--- 1718
Query: 485 GGKPPKLGALPKT----PSVETAEKLQ-KDLKEATDKLERANGGKPPK-------LG--- 529
+ K G L T P++ EK +DLK G P LG
Sbjct: 1719 -FRSEK-GLLSATQFTQPALTLMEKAAFEDLKS--------KGLIPADATFAGHSLGEYA 1768
Query: 530 ALPKTPSVEKVSR-ETLT----------RGGSQEDPTVLMRDLQDSMEREADLREQLRFA 578
AL S + ++ RG +Q ++ R+ R
Sbjct: 1769 AL--------ASLADVMSIESLVEVVFYRG----------MTMQVAVPRDELGRSN---- 1806
Query: 579 EEERYQRLYSVARDAFHPNLV---------QYLQIEKVRAESS---------TEKTQ--I 618
Y + A +P V QY+ +E+V + E Q
Sbjct: 1807 --------YGMI--AINPGRVAASFSQEALQYV-VERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 619 TGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERA 664
G+L +L + + L K + I +L+ S+ E
Sbjct: 1856 AGDLRALDTVTNVLNFIKL--------QKIDIIELQKSLSLEEVEG 1893
Score = 55.8 bits (134), Expect = 9e-08
Identities = 52/323 (16%), Positives = 96/323 (29%), Gaps = 118/323 (36%)
Query: 252 IDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENE 311
+D++ +N EK + ++M T + K+ + +NE + +
Sbjct: 1662 LDIVI---NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE-HSTSY 1717
Query: 312 DLNDEKKSLSLRVRELETE---AAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEM 368
EK LS T+ A AA E L+ ++GL
Sbjct: 1718 TFRSEKGLLSA------TQFTQPALTLMEKAA---FEDLK-----SKGL----------- 1752
Query: 369 KKELRYLEEEMDEMQDHFREDQAD---------EYSSLKKELEQTAKNCRILSFK----- 414
AD EY++L A ++S +
Sbjct: 1753 --------------------IPADATFAGHSLGEYAAL-------ASLADVMSIESLVEV 1785
Query: 415 LRKSER-RSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDL 473
+ R + Q+ + E + GM +N R+ A + E + + + +
Sbjct: 1786 VFY--RGMTMQVAVPRDELGRSN----YGMIAIN-PGRVAA-----SFSQEALQYVVERV 1833
Query: 474 KEATDK-LERAN----------GGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANG 522
+ T +E N G L AL +T + +K
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGD---LRAL------DTVTNVLNFIKL---------- 1874
Query: 523 GKPPKLGALPKTPSVEKVSRETL 545
+ + L K+ S+E+V L
Sbjct: 1875 -QKIDIIELQKSLSLEEV-EGHL 1895
Score = 43.1 bits (101), Expect = 7e-04
Identities = 84/494 (17%), Positives = 140/494 (28%), Gaps = 134/494 (27%)
Query: 462 ANETAEKLQKDLKEATDKLERANGGKPPK---------LGALPKTPSVETAEKLQKD--L 510
A++ E+ K L E T+ + P LG + + VE ++ Q D L
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADD---EPTTPAELVGKFLGYV--SSLVEPSKVGQFDQVL 84
Query: 511 KEATDKLERA--NGG---------KPPKLGALPKTPSVEKV---SRETLTRGGSQEDPTV 556
+ E G L KT + K +R R ++ +
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 557 LMRDLQDSMEREADLREQLRFA------EEERY----QRLYSVARDAFHPNLVQYLQIEK 606
L R + + A L A + Y + LY +H LV L I+
Sbjct: 145 LFRAVGEG---NAQL-----VAIFGGQGNTDDYFEELRDLY----QTYHV-LVGDL-IKF 190
Query: 607 VRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQ-LEASIREERERAT 665
E+L L + +K T L I + LE
Sbjct: 191 SA--------------ETLSE-LIRTTLDAEKVFTQGLN----ILEWLE-----NPSNTP 226
Query: 666 DLSVKAGSAASRELNQLREELTQLKKEAQ-RNAEKVTKLERDKTSLEENLKSKETQMTKT 724
D S L + QL A K+ L LK
Sbjct: 227 DKDYLLSIPISCPLIGV----IQL---AHYVVTAKLLGF--TPGELRSYLKGATGHSQGL 277
Query: 725 ISDLQTKCSTLEKSLTAEQKQKALK---------EKELKTKESEINVLKNQSSDNVTKQ- 774
++ + + +S +KA+ + ++L+ S +N
Sbjct: 278 VTAVAIAETDSWESFF-VSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-DSLENNEGVP 335
Query: 775 -----ITEL-KTQYEQEIKKLEDTLVQERQEYEDLTNRYD--ILEGEHVDIKASLVKEKE 826
I+ L + Q + + K L +Q L N ++ G SL
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-PP---QSL--YGL 389
Query: 827 NNHGRLQQTQKGMWISKRPWSKKRKI--------TTEPSVAKEEHSKSYQLQTTLQRLTE 878
N R + G+ S+ P+S +RK+ P HS L + +
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFS-ERKLKFSNRFLPVASP-----FHS-HL-LVPASDLINK 441
Query: 879 VAAELK---RASQL 889
+ A +
Sbjct: 442 DLVKNNVSFNAKDI 455
Score = 38.9 bits (90), Expect = 0.012
Identities = 57/415 (13%), Positives = 104/415 (25%), Gaps = 148/415 (35%)
Query: 886 ASQLPPTPPTTEESQNRIRRAAFAAKKSVSTESDHTGESSSRALHRKGSLYRKSLSLEQT 945
A++L TT + + A+ D S AL
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS---AL---------------- 145
Query: 946 SQLAQEENIWKMTDDNDSSLTS-F--QSIDDAY--ENVK-YTNYGRRETSMDRLEAEEKA 999
++ + ++ L + F Q D Y E Y Y
Sbjct: 146 ---------FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY---------------- 180
Query: 1000 RKSDVAAVKMRYDKRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQKT---------- 1049
V + A LS+ ++ F + + LE T
Sbjct: 181 -HVLVGDL---IKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIP 235
Query: 1050 --------------IADLKASHNSPTT--SRLSGGSTHSE------VITTSDRKK----- 1082
+ K +P S L G + HS+ I +D +
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 1083 -----KGLF--GKLKQLTRSSHSVD----RDS-DTSQFDPG-----SDTSLDDSRNLKDR 1125
LF G + S+ DS + ++ P S+ + + ++D
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ---VQDY 352
Query: 1126 ITGI-----FKKSGSTSRANSVD---------DLKAVITSLEQQISCMEDELSESRLETS 1171
+ K S N L + +L + L +SR+ S
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA--KAPSGLDQSRIPFS 410
Query: 1172 RLKTELVSE-------------KSAAEIKLSELTSKVNELEEDRLLSSGRTNKIP 1213
K + + A+++ +L + +IP
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI-------QIP 458
Score = 33.9 bits (77), Expect = 0.45
Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 19/112 (16%)
Query: 184 RTRSSASPRLKTPDKPSKADVDFILQVKDAK--KTRRKENLETDTESLAGTETTDTTETT 241
T A PR D+ +++ ++ + + + +E L+ E + T E
Sbjct: 1791 MTMQVAVPR----DELGRSNYG-MIAINPGRVAASFSQEALQYVVERVG-KRTGWLVE-- 1842
Query: 242 LVNDNEYSDQI---------DLLRHELDNMKAKCEKLEREKSDILLRRLASM 284
+VN N + Q D + + L+ +K + + + + L +
Sbjct: 1843 IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 52.4 bits (126), Expect = 1e-06
Identities = 29/203 (14%), Positives = 57/203 (28%), Gaps = 7/203 (3%)
Query: 600 QYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIRE 659
+Y + EK + + K +L E E S + LE + +E
Sbjct: 810 EYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQE 869
Query: 660 ERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKET 719
E + +K + L + L +L+ A + + +++K
Sbjct: 870 HAEAL-RIELKRQKKIAVLLQKYNRILKKLENWATTKSVY--LGSNETGDSITAVQAKLK 926
Query: 720 QMTKTISDLQTKCSTLEKSLTAEQKQ-KALKEKELKTKESEINVLKNQSSDNVTKQITEL 778
+ + Q+ L + Q L + + Q V
Sbjct: 927 NLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETY 986
Query: 779 KTQYEQEI---KKLEDTLVQERQ 798
K E+ +K+ED
Sbjct: 987 KNTLLAELERLQKIEDLHHHHHH 1009
Score = 50.0 bits (120), Expect = 5e-06
Identities = 17/157 (10%), Positives = 59/157 (37%), Gaps = 3/157 (1%)
Query: 558 MRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQ 617
+ ++E+ + E +R +++ + + +++ L+ +
Sbjct: 856 IDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNR--ILKKLENWATTKSVYLGSNE 913
Query: 618 ITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERER-ATDLSVKAGSAAS 676
+ ++++KL LEA + ++ + +S + + A + E +L+ + + +
Sbjct: 914 TGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFA 973
Query: 677 RELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEEN 713
++ ++ K E++ K+E +
Sbjct: 974 QQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
Score = 43.1 bits (102), Expect = 6e-04
Identities = 23/197 (11%), Positives = 50/197 (25%), Gaps = 16/197 (8%)
Query: 207 ILQVKDAKKTRRKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKC 266
I K K L E T + E+++ + + +
Sbjct: 829 IYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLL 888
Query: 267 EKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRE 326
+K R + S T + +Q ++ L+ + + + + +
Sbjct: 889 QKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLS 948
Query: 327 LETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHF 386
+ + + E E T A + E K L E + +++D
Sbjct: 949 ILAQLTELNYNGVPELT-ERKDTFFAQQW---TGVKSSAETYKNTLLAELERLQKIED-- 1002
Query: 387 REDQADEYSSLKKELEQ 403
L
Sbjct: 1003 ----------LHHHHHH 1009
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 50.7 bits (121), Expect = 4e-06
Identities = 35/279 (12%), Positives = 92/279 (32%), Gaps = 36/279 (12%)
Query: 245 DNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVN 304
+N + E + M + D ++ L + T + LLK Q R N
Sbjct: 1832 ENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANI-RLLKRQGRQN 1890
Query: 305 ELKTEN--EDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELM 362
+ + + +N ++ + +LE L KL E ++L
Sbjct: 1891 YVTPRHYLDFINQVVLLINEKRDQLEE---------EQLHLNIGL-KKLRDTEAQVKDLQ 1940
Query: 363 DENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRS 422
+ +EL E+ ++ +DQ + +K++ + + + + R+
Sbjct: 1941 VSLAQKNRELDVKNEQANQKLKQMVQDQQA--AEIKQKDARELQ---------VQLDVRN 1989
Query: 423 EQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLER 482
+++ +K++A + E ++ LE +++ + +
Sbjct: 1990 KEIAVQKVKAYADLEKAEPTGP---LREEVEQLENAANELKLKQDEIVATITALEKSIAT 2046
Query: 483 ANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERAN 521
+ E+++ + + +K++R+
Sbjct: 2047 YKEEYATLIR---------ETEQIKTESSKVKNKVDRSI 2076
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 49.7 bits (119), Expect = 6e-06
Identities = 22/212 (10%), Positives = 61/212 (28%), Gaps = 17/212 (8%)
Query: 582 RYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFET 641
+ Y V L+ ++ + + + +++ E
Sbjct: 798 NAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEK 857
Query: 642 DILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVT 701
E + L ++ +++ A L E + + E + V
Sbjct: 858 AEQEHAEA---LRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQ 914
Query: 702 KLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAE--QKQKALKEKELKTKESE 759
++ + + +S E Q + + + + L + E +++ ++ +S
Sbjct: 915 AKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSS 974
Query: 760 INVLKNQSSDNVTKQITELKTQYEQEIKKLED 791
KN + ++K+ED
Sbjct: 975 AETYKNT------------LLAELERLQKIED 994
Score = 44.3 bits (105), Expect = 3e-04
Identities = 20/201 (9%), Positives = 62/201 (30%), Gaps = 16/201 (7%)
Query: 570 DLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKL 629
+ + E + +Y+ + + ++ E A + +I +L+
Sbjct: 805 KTEKPPKGQEVSELEAIYNSLQTKL-----RLIKREPFVAPAGLTPNEIDSTWSALEKAE 859
Query: 630 SALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRE-LNQLREELTQ 688
+ + + + + +++ AT SV GS + + + ++ +L
Sbjct: 860 QEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKN 919
Query: 689 LKKEAQR----NAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQK 744
L+ + + L L E + ++T+ + T +
Sbjct: 920 LEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTF------FAQQWTGVKS 973
Query: 745 QKALKEKELKTKESEINVLKN 765
+ L + + +++
Sbjct: 974 SAETYKNTLLAELERLQKIED 994
Score = 36.9 bits (86), Expect = 0.051
Identities = 19/166 (11%), Positives = 43/166 (25%), Gaps = 21/166 (12%)
Query: 672 GSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTK 731
L + + + LE+ + E L+ + + K LQ
Sbjct: 824 SLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKY 883
Query: 732 CSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLED 791
+ L + K L + E+ + T + ++K LE
Sbjct: 884 N----RILKKLENWATTKSVYLGSNETG-----------------DSITAVQAKLKNLEA 922
Query: 792 TLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQK 837
+ + + + + ++ + V E Q
Sbjct: 923 FDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQW 968
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 44.0 bits (103), Expect = 4e-04
Identities = 38/247 (15%), Positives = 81/247 (32%), Gaps = 21/247 (8%)
Query: 227 ESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMET 286
++ D T D Q L+ +D + + +LA +E
Sbjct: 606 FEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLA-IEI 664
Query: 287 TTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEA 346
TT+ A+ + Q+ E + E +S + + R+ E A + + A+A
Sbjct: 665 TTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKA 724
Query: 347 LRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAK 406
A A + E ++K + +E E + + + Y+ + ELE
Sbjct: 725 EAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELE---- 780
Query: 407 NCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETA 466
++ +EA+K + + G + + E+++ +
Sbjct: 781 ---------VSKAQQLANVEAKKFKEMTEA-------LGPGTIRDLAVAGPEMQVKLLQS 824
Query: 467 EKLQKDL 473
L+ L
Sbjct: 825 LGLKSTL 831
Score = 37.1 bits (85), Expect = 0.042
Identities = 35/235 (14%), Positives = 68/235 (28%), Gaps = 3/235 (1%)
Query: 290 KTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRT 349
K +A + + D K+ V + + E + R
Sbjct: 593 KNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRD 652
Query: 350 KLAAAEGLCEELMDENEE--MKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKN 407
L + L E+ ++E K E + LE+E + + E +KEL +
Sbjct: 653 ALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAM 712
Query: 408 CRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAE 467
+ + EA ++E E + + + + + E
Sbjct: 713 SMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIY 772
Query: 468 KLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANG 522
+ E + + AN K + + T L E KL ++ G
Sbjct: 773 ARAQLELEVSKAQQLANVEA-KKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLG 826
Score = 34.8 bits (79), Expect = 0.21
Identities = 31/180 (17%), Positives = 72/180 (40%), Gaps = 4/180 (2%)
Query: 1108 FDPGSDTSLDDSRNLKDRITGIFKKSG---STSRANSVDDLKAVITSLEQQISCMEDELS 1164
F+ DT D + K R +F ++G S+ SV+ + Q+ + E++
Sbjct: 606 FEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEIT 665
Query: 1165 ESRLET-SRLKTELVSEKSAAEIKLSELTSKVNELEEDRLLSSGRTNKIPGLKTRMELAW 1223
+ E ++ + + + +++ ++ ++ + + + L + T A
Sbjct: 666 TNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAE 725
Query: 1224 HKEREEQQRLLQETSTLARDLRQTLFEVERERDKERLEAKRRFDQMKKTTEEEQEECRRK 1283
+ R E R+ E S L L+ +E E + ER++ R + + + E E + +
Sbjct: 726 AESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQ 785
Score = 33.2 bits (75), Expect = 0.63
Identities = 29/229 (12%), Positives = 71/229 (31%), Gaps = 14/229 (6%)
Query: 557 LMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKT 616
++R E D + R Q ++ VQ ++ R + +++
Sbjct: 598 IIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRS 657
Query: 617 QITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAAS 676
+ S+ +A + E ++ E + + + ++ E+ R L ++A S A
Sbjct: 658 VQLAIEITTNSQEAAAKHEAQRLEQEARGRLER-QKILDQSEAEKARKELLELEAMSMAV 716
Query: 677 RELNQLR------EELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQT 730
+ E +++ E K+ + E + K+ +
Sbjct: 717 ESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVRE-------ME 769
Query: 731 KCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELK 779
+ K + L E K + L + ++ E++
Sbjct: 770 LIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQ 818
Score = 30.2 bits (67), Expect = 5.2
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 1217 TRMELAWHKEREEQQRLLQETSTLARDLRQTLFEVERERDKERLEAKRRFDQMKKTTEEE 1276
+E + R+ QR +Q + + ++ + E +R ++ EA+ R ++ K + E
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQ--EARGRLERQKILDQSE 698
Query: 1277 QEECRRKLTE 1286
E+ R++L E
Sbjct: 699 AEKARKELLE 708
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 43.0 bits (100), Expect = 7e-04
Identities = 37/283 (13%), Positives = 95/283 (33%), Gaps = 24/283 (8%)
Query: 549 GSQEDPTVLMRDLQDSMEREAD-LREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKV 607
T+ DL ++ + + F + ++ +D F + +Q I +
Sbjct: 48 NDVSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMI--I 105
Query: 608 RAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDL 667
+ E+ + +++ +++ K +L++ +R +++ +
Sbjct: 106 YSCLKEERKILENAQRFNQAQSGNIQST---------VMLDKQKELDSKVRNVKDKVMCI 156
Query: 668 SVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKE----TQMTK 723
+ + L L++E K Q + + + E+ L K K
Sbjct: 157 EHE-----IKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRK 211
Query: 724 TISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKT--- 780
+ + + + L E + + + + I N D + T +
Sbjct: 212 EVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQ 271
Query: 781 QYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVK 823
Q Q++KKLE+ + E++ +T +L + L++
Sbjct: 272 QVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQ 314
Score = 33.3 bits (75), Expect = 0.65
Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 8/168 (4%)
Query: 670 KAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQ 729
A L+QL ++ ++ E N + + K +L++N + QM+ I
Sbjct: 52 FATIRFHDLLSQLDDQYSRFSLE--NNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCL 109
Query: 730 TKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKL 789
+ + + + + + +S + + K + D+ + + + E EIK L
Sbjct: 110 KEERKIL------ENAQRFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSL 163
Query: 790 EDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQK 837
ED + + + L NR G + + + L +K
Sbjct: 164 EDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRK 211
Score = 29.9 bits (66), Expect = 7.1
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 4/115 (3%)
Query: 368 MKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEA 427
+K+E + LE Q Q+ +KEL+ +N + + + E L+
Sbjct: 109 LKEERKILENAQRFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQ- 167
Query: 428 EKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLER 482
+ + E ++E L + L KE K+
Sbjct: 168 ---DEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIE 219
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 42.3 bits (100), Expect = 0.001
Identities = 16/121 (13%), Positives = 42/121 (34%), Gaps = 16/121 (13%)
Query: 268 KLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVREL 327
+ + R L + ++ Q + +L+ + L +EK++++ VR L
Sbjct: 44 ESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRAL 103
Query: 328 ETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFR 387
+ + ++ L E++K+L L + ++++ F
Sbjct: 104 VVNQDNSQVQQDPQYQS----------------LRARGREIRKQLTLLYPKEAQLEEQFY 147
Query: 388 E 388
Sbjct: 148 L 148
Score = 29.2 bits (66), Expect = 9.5
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 7/72 (9%)
Query: 419 ERRSEQLEAEKLEAEKKCR-------EVCGGMEGVNKVERIQALEKELKLANETAEKLQK 471
E R + + LE EK+ V V + + Q+L + + L
Sbjct: 78 ELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYP 137
Query: 472 DLKEATDKLERA 483
+ ++
Sbjct: 138 KEAQLEEQFYLR 149
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 40.3 bits (93), Expect = 0.004
Identities = 29/246 (11%), Positives = 78/246 (31%), Gaps = 12/246 (4%)
Query: 246 NEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNE 305
+ +D LD +A L + + R ++ + E + +++
Sbjct: 451 QRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRA---EGTNFRTVLDK 507
Query: 306 LKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDEN 365
+ + + +S + L + + A+ ++ + L+
Sbjct: 508 AVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNV--LKSLLSNL 565
Query: 366 EEMKKELRYLEEEMDEMQDHFREDQADEYSSLKK------ELEQTAKNCRILSFKLRKSE 419
+E+KKE LE ++ + + + + + L+ K+++S
Sbjct: 566 DEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESL 625
Query: 420 RRSEQLEAEKLEAEKKCREVCGGMEGVNKVER-IQALEKELKLANETAEKLQKDLKEATD 478
++ E L + ++ ++ N E ++ L E L++ K +
Sbjct: 626 KKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNE 685
Query: 479 KLERAN 484
E
Sbjct: 686 LTEILV 691
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 40.2 bits (93), Expect = 0.005
Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 12/179 (6%)
Query: 652 QLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLE 711
+L++ +R +++ + + + L L++E K Q + + + E
Sbjct: 6 ELDSKVRNVKDKVMCIEHE-----IKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQE 60
Query: 712 EN-LKSKETQMTKTISDLQTKCSTLEKSLTAEQKQ---KALKEKELKTKESEINVLKNQS 767
+ LK + ++ K L Q L E + + + + I N
Sbjct: 61 QLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNAC 120
Query: 768 SDNVTKQITELKT---QYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVK 823
D + T + Q Q++KKLE+ + E++ +T +L + L++
Sbjct: 121 LDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQ 179
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 39.6 bits (91), Expect = 0.007
Identities = 29/220 (13%), Positives = 75/220 (34%), Gaps = 6/220 (2%)
Query: 571 LREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLS 630
+ +Q+ + + + + Q S + + E +K+ +
Sbjct: 368 FIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIY 427
Query: 631 ALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLK 690
+ + F + + K + E + E +K+ + + + Q + LT+ +
Sbjct: 428 SKPGGYRLFVQKLQDLKKKYYE-EPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKE 486
Query: 691 KEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQK-----Q 745
KE + K + L E + E M + Q L + + ++ Q
Sbjct: 487 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ 546
Query: 746 KALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQE 785
+ +L+ +E + + S + +I +L+T+ +
Sbjct: 547 ERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRR 586
Score = 35.3 bits (80), Expect = 0.14
Identities = 27/212 (12%), Positives = 78/212 (36%), Gaps = 16/212 (7%)
Query: 623 ESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQL 682
K + LE ++ F E SS + ++ + +
Sbjct: 379 LFQKELAAQLEKKRDDFCKQNQEASSD--RCSGLLQVIFSPLEEEVKAGIYSKPGGYRLF 436
Query: 683 REELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAE 742
++L LKK+ K + E + ++ +S + +T +++LT +
Sbjct: 437 VQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQT-----------DQTLTEK 485
Query: 743 QKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYED 802
+K+ ++ + ++ ++ +L N + + + + Y++ +K+L + + +R +
Sbjct: 486 EKEIEVERVKAESAQASAKMLHEMQRKNE-QMMEQKERSYQEHLKQLTEKMENDRVQLLK 544
Query: 803 LTNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834
R L + + + L + + ++
Sbjct: 545 EQER--TLALKLQEQEQLLKEGFQKESRIMKN 574
Score = 32.6 bits (73), Expect = 0.89
Identities = 41/244 (16%), Positives = 91/244 (37%), Gaps = 29/244 (11%)
Query: 538 EKVSRETLTRGGSQEDPTVLMRDLQDSMERE-ADLREQLRFAEEERYQRLYSVARDAFHP 596
E+ + E R ++ + ++L +E++ D +Q + A +R L V
Sbjct: 361 EREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEE 420
Query: 597 NLVQ--------YLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSS 648
+ Y + + + + + + L K+ IL+
Sbjct: 421 EVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQ 480
Query: 649 KITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKT 708
+T+ E I ER +A ++ A+++ L++++ + Q+ ++ +R
Sbjct: 481 TLTEKEKEIEVERVKA-----ESAQASAKMLHEMQRKNEQMMEQKER------------- 522
Query: 709 SLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQ--KALKEKELKTKESEINVLKNQ 766
S +E+LK +M L + EQ+Q K +KE + ++EI L+ +
Sbjct: 523 SYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582
Query: 767 SSDN 770
Sbjct: 583 MRRR 586
Score = 32.2 bits (72), Expect = 1.4
Identities = 19/106 (17%), Positives = 38/106 (35%)
Query: 290 KTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRT 349
K E +K + K +E ++ + + R + + +R
Sbjct: 487 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ 546
Query: 350 KLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYS 395
+ A L E+ E +KE R ++ E+ ++Q R +A S
Sbjct: 547 ERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKACTIS 592
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.011
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 11/39 (28%)
Query: 783 EQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASL 821
+Q +KKL+ +L + Y D D + IKA++
Sbjct: 19 KQALKKLQASL----KLYAD-----D--SAPALAIKATM 46
Score = 34.9 bits (79), Expect = 0.055
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 645 EKSSKITQLEASIRE-ERERATDLSVKA 671
EK + + +L+AS++ + A L++KA
Sbjct: 18 EKQA-LKKLQASLKLYADDSAPALAIKA 44
Score = 33.0 bits (74), Expect = 0.32
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 450 ERIQALEKELKL-ANETAEKLQKDLKEATDKLE 481
+ ++ L+ LKL A+++A L +K AT +E
Sbjct: 20 QALKKLQASLKLYADDSAPALA--IK-AT--ME 47
Score = 31.8 bits (71), Expect = 0.60
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 621 ELESLKSKLSALEAEKKKFETDILEKSSKITQLEASI 657
E ++LK KL +A K + D S+ ++A++
Sbjct: 18 EKQALK-KL---QASLKLYADD----SAPALAIKATM 46
Score = 28.8 bits (63), Expect = 8.4
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 996 EEKARKSDVAAVKMRYDKRATALSDELKAIQGQV 1029
E++A K A++K+ D A AL AI+ +
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL-----AIKATM 46
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 36.8 bits (86), Expect = 0.049
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 17/115 (14%)
Query: 268 KLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVREL 327
KL RE +++ L E+LKL E L E+ +++ +
Sbjct: 5 KLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEI--- 61
Query: 328 ETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEM 382
+K + L K E++ E++ E+ L++++D
Sbjct: 62 ----GKRRKKGE---PVDELLAKSR-------EIVKRIGELENEVEELKKKIDYY 102
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 35.9 bits (82), Expect = 0.069
Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 3/153 (1%)
Query: 294 SELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKK---SNAAEREAEALRTK 350
++ + + L+ E L + +++ + A+ +K +ERE +L +
Sbjct: 39 NDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIE 98
Query: 351 LAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRI 410
A+ + E E ++ E++ E+ ++++ E + +
Sbjct: 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKET 158
Query: 411 LSFKLRKSERRSEQLEAEKLEAEKKCREVCGGM 443
+K E E+ E + ++ R
Sbjct: 159 QQIIFKKKEDLVEKTEPKIYSFYERIRRWAKNT 191
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 35.3 bits (81), Expect = 0.16
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 3/123 (2%)
Query: 677 RELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLK---SKETQMTKTISDLQTKCS 733
+L +L +E + N + K ++ + + + E + K L +
Sbjct: 97 AKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVT 156
Query: 734 TLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTL 793
+ K LT E Q L+ + E + +I LK E E +++
Sbjct: 157 SYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEA 216
Query: 794 VQE 796
+QE
Sbjct: 217 IQE 219
Score = 32.6 bits (74), Expect = 0.95
Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 9/141 (6%)
Query: 270 EREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLND----EKKSLSLRVR 325
E K +LL L S E + E +Q ++ EL+ E + K +
Sbjct: 67 ESVKQAVLLNVLGSGEEIPDPLSPGER-GIQAKLKELEDEQRNELVRLKYNDKIKEKFGK 125
Query: 326 ELETEAAAFKKSNAAEREAEALRTKL-AAAEGLCEELMDENEEMKKELRYLEEEMDE-MQ 383
ELE AE E E L A + L +E+ +M++ L++E+ E
Sbjct: 126 ELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTH 185
Query: 384 DHFR--EDQADEYSSLKKELE 402
++ D+ +LK +E
Sbjct: 186 AETVMVKEYRDKIDALKNAIE 206
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.16
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 617 QITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAAS 676
++T E ES++ +++ + E + +E RE+ ++ +
Sbjct: 79 RLTQEPESIR-------KWREEQRKRLQELDAASKVMEQEWREKAKKDLE---------- 121
Query: 677 RELNQLREELTQLKKEAQRNAEKVTKLERD 706
E NQ + E + K R A+K + D
Sbjct: 122 -EWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 32.1 bits (72), Expect = 0.82
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 1225 KEREEQQRLLQETSTLARDLRQTLFEVERERDKERLEA--KRRFDQMKKTTEEEQEE 1279
K REEQ++ LQE ++ + Q RE+ K+ LE +R+ +Q++K +
Sbjct: 89 KWREEQRKRLQELDAASKVMEQEW----REKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Score = 31.7 bits (71), Expect = 1.2
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 741 AEQKQKALKEK--ELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQ 798
E+++K L+E K E E + + ++ +E + + + + Q+
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Query: 799 E 799
Sbjct: 151 A 151
Score = 30.9 bits (69), Expect = 1.6
Identities = 11/92 (11%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 678 ELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEK 737
+ ++L +E ++K + +++ +L+ +E+ + K K + + +
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKA---KKDLEEWNQR------ 126
Query: 738 SLTAEQKQKALKEKELKTKESEINVLKNQSSD 769
+EQ +K + ++ + +D
Sbjct: 127 --QSEQVEKNKIN----NRIADKAFYQQPDAD 152
Score = 30.5 bits (68), Expect = 2.2
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 414 KLRK-SERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKD 472
+RK E + ++L+ E A K + + + + LE+ + +E EK + +
Sbjct: 86 SIRKWREEQRKRLQ-ELDAASKVMEQ-------EWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 473 LKEA 476
+ A
Sbjct: 138 NRIA 141
Score = 29.4 bits (65), Expect = 5.5
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 1253 RERDKERLEAKRRFDQMKKTTEEEQEECRRKLTE 1286
RE ++RL+ K +E +E+ ++ L E
Sbjct: 91 REEQRKRLQELDA--ASKVMEQEWREKAKKDLEE 122
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 35.0 bits (80), Expect = 0.18
Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 18/182 (9%)
Query: 621 ELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELN 680
E L+ ++ + KF I+EK + + + +L ++E
Sbjct: 592 MSERLQWEVEKYSF-QVKFIKMIIEKELTV-----TNKPRNAIIQELENLGFPRFNKEGK 645
Query: 681 QLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLT 740
E + + T E D+ S E+ ++ + + SLT
Sbjct: 646 PYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLT 705
Query: 741 AEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEY 800
E+ QK LK+K + KE+E+ L K + ++K E + Q
Sbjct: 706 KERYQKLLKQK--QEKETELENLLK----------LSAKDIWNTDLKAFEVGYQEFLQRD 753
Query: 801 ED 802
+
Sbjct: 754 AE 755
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 33.7 bits (76), Expect = 0.39
Identities = 12/99 (12%), Positives = 34/99 (34%)
Query: 603 QIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERE 662
IE+ + + + E+ES L+++ K + ++ + +++ LE + E
Sbjct: 10 AIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLFDLEQKLASGAE 69
Query: 663 RATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVT 701
+ + AA + + + +
Sbjct: 70 NPGEKKSFSERAAEELIKSWDGKQGTFGAKTFNKSLGSD 108
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 33.9 bits (78), Expect = 0.40
Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 8/131 (6%)
Query: 696 NAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKT 755
+ + V+ + EN+ K D++ + L+ ++ + K
Sbjct: 122 DGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELS-RMFEEVSGSIQYKK 180
Query: 756 KESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTL------VQERQEYEDLTNRYDI 809
+ E+ + S + T+ I + + E+K + Y++ R+++
Sbjct: 181 EYEELKEKIEKLSKSATESIKNRR-RIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEV 239
Query: 810 LEGEHVDIKAS 820
+ E +KA
Sbjct: 240 INNETEQLKAE 250
Score = 31.6 bits (72), Expect = 1.9
Identities = 15/158 (9%), Positives = 42/158 (26%), Gaps = 10/158 (6%)
Query: 1121 NLKDRITGIFKKSGSTSRANSVDDLKAVITSLEQQISCMEDELSESRLETSRLKT---EL 1177
+ KD + + +A + + + + Q + E + + K EL
Sbjct: 127 SYKD-YSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEEL 185
Query: 1178 VSEKSAAEIKLSELTSKVNELEED-RLLSSGRTNKIPGLKTRMELAWHKEREEQQRLLQE 1236
+ +E + + + S + + R E E
Sbjct: 186 KEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETE 245
Query: 1237 TSTLARD-LRQTLFEVERERDKERLEA----KRRFDQM 1269
+ +++++R + + D +
Sbjct: 246 QLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAI 283
Score = 30.0 bits (68), Expect = 5.9
Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 14/172 (8%)
Query: 218 RKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDIL 277
+ + + + L + LV + EL M + + K +
Sbjct: 124 KTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEY- 182
Query: 278 LRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKS 337
+ ++ KL + E ++ E K+ E+ + +
Sbjct: 183 ------------EELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRY 230
Query: 338 NAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYL-EEEMDEMQDHFRE 388
+ AE E + + + ++++++ ++KK+ + L E+ D + DH
Sbjct: 231 DEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDA 282
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A
{Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E
1n4a_A* 1n4d_A
Length = 245
Score = 33.0 bits (76), Expect = 0.48
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 30/115 (26%)
Query: 431 EAEKKCREVCGGMEGVNKVERIQALEKELKLAN------ETAEKLQ-----------KDL 473
+A+K E +G+N +ERI AL+ +L +A ++L +
Sbjct: 35 QAQKI--EQVSTWQGMN-LERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSI 91
Query: 474 KEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKL 528
++ + L + L +P + AE+ + L + +L+ KP K
Sbjct: 92 EQIANALRQ--------LAPW--SPQPDKAEQAAQSLLDQYAQLKAQYADKPKKR 136
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 33.1 bits (76), Expect = 0.64
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 639 FETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKE 692
FE I E +KI L A R++ + ++ E+++LRE+ +L ++
Sbjct: 28 FEQPIAELEAKIDSLTAGSRQDEKLDINI--------DEEVHRLREKSVELTRK 73
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 32.9 bits (76), Expect = 0.69
Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 33/131 (25%)
Query: 252 IDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENE 311
I+L+R + D +K + L R + + ++L+L +R E+ E
Sbjct: 4 INLIREKPDYVKER-----------LATRDKELVSL-----VDKVLELDKRRREIIKRLE 47
Query: 312 DLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKE 371
L E+ LS + K+ + ++ ++ EL +E + +++E
Sbjct: 48 ALRSERNKLSKEI-------GKLKREGK---DTTEIQNRVK-------ELKEEIDRLEEE 90
Query: 372 LRYLEEEMDEM 382
LR +EEE+
Sbjct: 91 LRKVEEELKNT 101
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 32.9 bits (73), Expect = 0.81
Identities = 29/218 (13%), Positives = 66/218 (30%), Gaps = 6/218 (2%)
Query: 726 SDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLK---NQSSDNVTKQITELKTQY 782
+D Q K + + L QK A + + + N + + K+ + K Y
Sbjct: 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADY 64
Query: 783 EQEIKKLEDTLVQ---ERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGM 839
E ++ K + L + + +Y Y+ + A L K K + + + + +
Sbjct: 65 EAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSAQNL 124
Query: 840 WISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRASQLPPTPPTTEES 899
P + T + ++ T+ + + +L S
Sbjct: 125 VYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSKAKYDQKILQLDDLDITNLEQSNDVAS 184
Query: 900 QNRIRRAAFAAKKSVSTESDHTGESSSRALHRKGSLYR 937
+ +T S+++ L +G
Sbjct: 185 SMELYGNFGDKAGWSTTVSNNSQVKWGSVLLERGQSAT 222
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 31.5 bits (71), Expect = 0.82
Identities = 27/150 (18%), Positives = 65/150 (43%), Gaps = 3/150 (2%)
Query: 335 KKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEY 394
K + L ++A + L E + E + + LEEE+ + ++ + +A
Sbjct: 7 DKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQA- 65
Query: 395 SSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQA 454
++ ++ + ++LS KL+++E R+E E + EK ++ + + +A
Sbjct: 66 EKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQK--LKYKA 123
Query: 455 LEKELKLANETAEKLQKDLKEATDKLERAN 484
+ +E+K + E+L +++ R
Sbjct: 124 ISEEMKQLEDKVEELLSKNYHLENEVARLK 153
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 31.4 bits (71), Expect = 0.95
Identities = 13/91 (14%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 707 KTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQ 766
+LE K + +++ + +DLQ K L+ + K EK++ +
Sbjct: 25 SNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTK--LEKDVMAQRQTFAQKAQA 82
Query: 767 SSDNVTKQITELKTQYEQEIKKLEDTLVQER 797
+ ++ E + + I+ ++ +
Sbjct: 83 FEQDRARRSNEERGKLVTRIQTAVKSVANSQ 113
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 32.6 bits (74), Expect = 1.1
Identities = 18/154 (11%), Positives = 44/154 (28%), Gaps = 7/154 (4%)
Query: 610 ESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSV 669
+ + + + +E K FE +E + I+ ++ + +
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIE-------TKDLIKAKKINESYPRI 57
Query: 670 KAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQ 729
K + +N E L Q + ++ ++ + +
Sbjct: 58 KPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAG 117
Query: 730 TKCSTLEKSLTAEQKQKALKEKELKTKESEINVL 763
+ S + + L K + KES +L
Sbjct: 118 LPRPDVGLSDEKISQIEKLGIKVSEHKESLQKIL 151
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein
structure initiativ midwest center for structural
genomics; 2.97A {Streptomyces avermitilis}
Length = 250
Score = 31.7 bits (71), Expect = 1.2
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 345 EALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDE 381
L A + ++L E+ E+ + ++ LEE D
Sbjct: 213 GELPEDARAWQVGVDQLAAEDSEVAEYVQSLEEARDT 249
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG
structure initiative; 2.35A {Corynebacterium glutamicum
atcc 13032} SCOP: c.56.8.1
Length = 319
Score = 31.7 bits (71), Expect = 1.4
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 345 EALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKEL 401
AL E +E+ E+++ + LE++ D + +R + EL
Sbjct: 232 LALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDSELERYRNRHPQAVMPGESEL 288
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 32.0 bits (73), Expect = 1.5
Identities = 29/188 (15%), Positives = 64/188 (34%), Gaps = 18/188 (9%)
Query: 218 RKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDIL 277
R++ + D E+L + + ++ D + S + DL + E ++A+ ++ K L
Sbjct: 19 REKGVALDLEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQ-NAVKSIKKQHL 77
Query: 278 LRRLASMETTTSKTTASE--LLKLQQRVNELKT-----ENEDLNDEKKSLSLRVRELETE 330
+ + + A E L L + + K E+ + S
Sbjct: 78 VEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIR 137
Query: 331 AAAFKKSNAAEREAEALRT----------KLAAAEGLCEELMDENEEMKKELRYLEEEMD 380
K + + K A A+ +++ E ++ EL+ LE++
Sbjct: 138 EKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAK 197
Query: 381 EMQDHFRE 388
+ Q
Sbjct: 198 DNQQKLEA 205
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 31.7 bits (73), Expect = 1.5
Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 268 KLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVREL 327
K R++ ++ R + LL L + V ELK +++ E+ ++ RV
Sbjct: 5 KRLRQEPEVFHRAIR---EKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRV--- 58
Query: 328 ETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEM 382
A + L +E + +++ LR E ++ +
Sbjct: 59 ----PKAPPEEKEALIARG------------KALGEEAKRLEEALREKEARLEAL 97
Score = 30.2 bits (69), Expect = 4.8
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 418 SERRSEQLEAEKLEAEKKC--REVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKE 475
E + + ++++ E+ + V E +AL K E A++L++ L+E
Sbjct: 35 REVQELKKRLQEVQTERNQVAKRV-----PKAPPEEKEALIARGKALGEEAKRLEEALRE 89
Query: 476 ATDKLERA 483
+LE
Sbjct: 90 KEARLEAL 97
>3av0_A DNA double-strand break repair protein MRE11; DNA repair,
calcineurin-like phosphoesterase, ABC transporte
domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus
jannaschii} PDB: 3auz_A*
Length = 386
Score = 31.8 bits (72), Expect = 1.5
Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 6/130 (4%)
Query: 265 KCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRV 324
+ + EK DI R + K+ + K+++ N+ + + K
Sbjct: 253 DLDISDIEKIDIECREFVEVNIKDKKSFNEAVNKIERCKNKPVVFGKIKREFKPWFDTLK 312
Query: 325 RELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENE------EMKKELRYLEEE 378
++ A + L E L + + + K L E
Sbjct: 313 DKILINKAIIVDDEFIDMPDNVDIESLNIKELLVDYANRQGIDGDLVLSLYKALLNNENW 372
Query: 379 MDEMQDHFRE 388
+ + +++
Sbjct: 373 KELLDEYYNT 382
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 31.7 bits (73), Expect = 1.7
Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 33/153 (21%)
Query: 252 IDL-------LRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTT--ASELLKLQQR 302
IDL LR L++ + + LER+ +L K S Q+R
Sbjct: 382 IDLIDEAAARLRMALESAPEEIDALERK-----KLQLEIEREALKKEKDPDS-----QER 431
Query: 303 VNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELM 362
+ ++ E L +E L E E +K A+ + +R ++ AE
Sbjct: 432 LKAIEAEIAKLTEEIAKLRAE---WEREREILRKLREAQHRLDEVRREIELAE------R 482
Query: 363 DENEEMKKELRY-----LEEEMDEMQDHFREDQ 390
+ ELRY LE E++ + + R +
Sbjct: 483 QYDLNRAAELRYGELPKLEAEVEALSEKLRGAR 515
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 31.6 bits (71), Expect = 1.7
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 261 NMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTE----NEDLNDE 316
+++ E E L ++ M + + +L++ EL + + DE
Sbjct: 319 SLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDE 378
Query: 317 KKSLSLRVRELETEAAAFKKSNAAEREAEA 346
KK L + + L+ E AFK+ A ++
Sbjct: 379 KKKLEDKKKSLDDEVNAFKQRKTAAELLQS 408
Score = 30.1 bits (67), Expect = 5.0
Identities = 18/132 (13%), Positives = 44/132 (33%), Gaps = 7/132 (5%)
Query: 720 QMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELK 779
++ + S + ++ EL+ KE E+ + Q ++ E +
Sbjct: 302 KLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAE 361
Query: 780 TQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGM 839
+ ++ +L+ E+++ ED L+ E + + K Q +
Sbjct: 362 KELHEKFDRLKKLHQDEKKKLEDKKKS---LDDE----VNAFKQRKTAAELLQSQGSQAG 414
Query: 840 WISKRPWSKKRK 851
K++K
Sbjct: 415 GSQTLKRDKEKK 426
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 31.5 bits (72), Expect = 2.0
Identities = 11/99 (11%), Positives = 33/99 (33%), Gaps = 11/99 (11%)
Query: 518 ERANGGKPPKLGALPKTPSVEKVSR-ETLTRGGSQEDPTVLMRDLQDSMER-------EA 569
E + + + + ++L ED + ++D M+
Sbjct: 426 EHCANTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGP 485
Query: 570 DLREQLRFAEE--ERYQRLYSVAR-DAFHPNLVQYLQIE 605
L + ++ EE ++ + + + +P L + ++
Sbjct: 486 HLEKAVKELEELYKKSKNVGIKNKRLHANPELEEAYRVP 524
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 31.2 bits (71), Expect = 2.2
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 461 LANETAEKLQKDLKEATDKLERANGGKPPKL 491
LA++ AE ++ ++ ++ + G+ P L
Sbjct: 9 LASKVAETFNTEIINNVEEYKKTHNGQGPLL 39
Score = 30.0 bits (68), Expect = 4.6
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 501 ETAEKLQKDLKEATDKLERANGGKPPKL 528
+ AE ++ ++ ++ + G+ P L
Sbjct: 12 KVAETFNTEIINNVEEYKKTHNGQGPLL 39
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 31.2 bits (71), Expect = 2.7
Identities = 15/128 (11%), Positives = 39/128 (30%), Gaps = 10/128 (7%)
Query: 633 EAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKE 692
E+++++F + I + + R + + +N + + KK
Sbjct: 24 ESQRRRFAD--PDIVDAIIEADKKWRRTQFLTEASK--------KLINICSKAVGAKKKA 73
Query: 693 AQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKE 752
+ + + + K + E E + L+ L + K+ E+E
Sbjct: 74 KEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEE 133
Query: 753 LKTKESEI 760
+
Sbjct: 134 RDKLMLNV 141
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.9 bits (69), Expect = 3.3
Identities = 12/88 (13%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 359 EELMDENEEMKK-----------ELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKN 407
++ EM++ +L+ E E+ + +++ ++ L+++ Q
Sbjct: 329 AKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDE 388
Query: 408 CRILSFKLRKSERRSEQLEAEKLEAEKK 435
+ R E+++ EK + + K
Sbjct: 389 KANWEAQQRILEQQNSSRTLEKNKKKGK 416
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein;
unknown function; 2.60A {Mycobacterium tuberculosis}
Length = 351
Score = 30.5 bits (68), Expect = 3.3
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 345 EALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQD 384
L A + +E + + E+ + + LE + D D
Sbjct: 272 AVLAEAAAEVQAKIDEQVQASAEVAQVVAALERQYDAFID 311
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 30.7 bits (69), Expect = 3.5
Identities = 18/154 (11%), Positives = 44/154 (28%), Gaps = 7/154 (4%)
Query: 610 ESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSV 669
+ + + + +E K FE +E + I+ ++ + +
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIE-------TKDLIKAKKINESYPRI 57
Query: 670 KAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQ 729
K + +N E L Q + ++ ++ + +
Sbjct: 58 KPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAG 117
Query: 730 TKCSTLEKSLTAEQKQKALKEKELKTKESEINVL 763
+ S + + L K + KES +L
Sbjct: 118 LPRPDVGLSDEKISQIEKLGIKVSEHKESLQKIL 151
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 30.5 bits (67), Expect = 3.8
Identities = 24/189 (12%), Positives = 67/189 (35%), Gaps = 10/189 (5%)
Query: 293 ASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLA 352
A +L + +R +L + +K+ + E E + + A+ + + K
Sbjct: 56 AQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNW 115
Query: 353 AAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILS 412
E +++M +E K+ + +E +A KK K ++
Sbjct: 116 QKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEA-----AKKAHHAACKEEKLAI 170
Query: 413 FKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKD 472
+ S+ + + + K + + + + EK LK ++ + ++
Sbjct: 171 SREANSKADPSLNPEQLKKLQDKIEKCKQDVL-----KTKEKYEKSLKELDQGTPQYMEN 225
Query: 473 LKEATDKLE 481
+++ ++ +
Sbjct: 226 MEQVFEQCQ 234
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 30.2 bits (67), Expect = 4.3
Identities = 31/259 (11%), Positives = 86/259 (33%), Gaps = 19/259 (7%)
Query: 224 TDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLAS 283
+ + ++ T + +D+ C L L A
Sbjct: 3 SGSSGMSVTYDDSVGVEVSSDSFWEVGNYKRTVKRIDDGHRLCSDLMN-----CLHERAR 57
Query: 284 METTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAERE 343
+E ++ +L + +R +L + +K+ + E E + + A+
Sbjct: 58 IEKAYAQ----QLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMN 113
Query: 344 AEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQ 403
+ + K E +++M +E K+ E+ + Q + E + KK
Sbjct: 114 DDFEKIKNWQKEAFHKQMMGGFKETKE----AEDGFRKAQKP-WAKKLKEVEAAKKAHHA 168
Query: 404 TAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLAN 463
K ++ + S+ + + + K + + + + EK LK +
Sbjct: 169 ACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVL-----KTKEKYEKSLKELD 223
Query: 464 ETAEKLQKDLKEATDKLER 482
+ + +++++ ++ ++
Sbjct: 224 QGTPQYMENMEQVFEQCQQ 242
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 29.7 bits (67), Expect = 4.4
Identities = 17/86 (19%), Positives = 32/86 (37%)
Query: 307 KTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENE 366
+ E + + R + +E EAA + + E + AA +E
Sbjct: 3 QGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELA 62
Query: 367 EMKKELRYLEEEMDEMQDHFREDQAD 392
K ++ LE ++ EM+ + AD
Sbjct: 63 AAKAQIAELEAKLSEMEHRYLRLYAD 88
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 29.6 bits (67), Expect = 4.6
Identities = 12/76 (15%), Positives = 32/76 (42%)
Query: 733 STLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDT 792
S+ E+ Q + + + + E+ + D +++ L+ Q + + D
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDG 61
Query: 793 LVQERQEYEDLTNRYD 808
+++ + E E+L R +
Sbjct: 62 ILRVKAEMENLRRRTE 77
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 29.1 bits (65), Expect = 4.6
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 363 DENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRS 422
E MK+E L+E + E + R++ ++ SL +E + L +E R
Sbjct: 13 KEMASMKEEFTRLKEAL-EKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC 71
Query: 423 EQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLER 482
+QL K++ E K +E+ +E ++ E L + + + +L++D+ + L +
Sbjct: 72 DQLIKNKIQLEAKVKEMNKRLE--DEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAK 129
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine,
trap-transporter, periplasmic binding protein,
transport; HET: 4CS; 1.55A {Halomonas elongata} PDB:
2vpo_A* 3gyy_A
Length = 316
Score = 29.9 bits (68), Expect = 5.0
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 311 EDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKK 370
E L++E + L V++ A + E+L + A + N+E +
Sbjct: 221 EGLSEEDQQL---VQDAADAAYDHTIEHIKGLSEESL--EKIKAASDEVTVTRLNDEQIQ 275
Query: 371 ELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCR 409
+ E ++++ F E ++ L + + K +
Sbjct: 276 AFK---ERAPQVEEKFIEMTGEQGQELLDQFKADLKAVQ 311
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell
adhesion; NMR {Homo sapiens} PDB: 2p03_A
Length = 323
Score = 30.1 bits (67), Expect = 5.3
Identities = 43/201 (21%), Positives = 70/201 (34%), Gaps = 1/201 (0%)
Query: 275 DILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAF 334
D L +L T+ K + EL KL + K + + N ++LS E +
Sbjct: 114 DPRLEKLWHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPS 173
Query: 335 KKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEY 394
S+ + T+L + +D + + E E +E + D A
Sbjct: 174 DLSDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSA 233
Query: 395 SSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQA 454
+ KELE + + K+ K +QLE E + V G E+
Sbjct: 234 NLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAH-EKLRHAESVGDGERVSRSREKHAL 292
Query: 455 LEKELKLANETAEKLQKDLKE 475
LE K T +K +DL
Sbjct: 293 LEGRTKELGYTVKKHLQDLSG 313
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 30.3 bits (68), Expect = 5.5
Identities = 18/154 (11%), Positives = 44/154 (28%), Gaps = 7/154 (4%)
Query: 610 ESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSV 669
+ + + + +E K FE +E + I+ ++ + +
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIE-------TKDLIKAKKINESYPRI 57
Query: 670 KAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQ 729
K + +N E L Q + ++ ++ + +
Sbjct: 58 KPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAG 117
Query: 730 TKCSTLEKSLTAEQKQKALKEKELKTKESEINVL 763
+ S + + L K + KES +L
Sbjct: 118 LPRPDVGLSDEKISQIEKLGIKVSEHKESLQKIL 151
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 29.8 bits (66), Expect = 6.0
Identities = 26/177 (14%), Positives = 67/177 (37%), Gaps = 21/177 (11%)
Query: 543 ETLTRGGSQEDPTVLMRDLQDSMEREADLREQLR-------FAEEERYQRLYSVARDAFH 595
L G+ + +Q ++++ A L ++ F +E+R QR + + R
Sbjct: 140 AQLPGDGAVLGDKLDPAAMQLALDQRAALADRTLGEWAEPFFGDEQRRQR-HDLER---- 194
Query: 596 PNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEA 655
++I S +K L +L ++L+ E ++ + +KI L+
Sbjct: 195 ------IRIANDTTLSPEQKAA---RLAALDAQLTPDERAQQAALHAQQDAVTKIADLQK 245
Query: 656 SIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEE 712
+ + ++ G A+ Q++++ + Q A + ++ + ++
Sbjct: 246 AGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQD 302
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 29.8 bits (66), Expect = 7.1
Identities = 29/184 (15%), Positives = 65/184 (35%), Gaps = 15/184 (8%)
Query: 338 NAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSL 397
+ A +A+ K EEL ++ + EL+ L++ + ++E +
Sbjct: 1 SPAGVLVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESL--RIQAQ 58
Query: 398 KKELEQTAKNCRI-LSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALE 456
+L Q R+ L++ + E + + ++ R VE + +
Sbjct: 59 FAQLGQLNPQERMSRETALQQKQVSLETWLQREAQTLQQYR-----------VELAEKHQ 107
Query: 457 KELKLANETAEK-LQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATD 515
K L+L + L +L + + + A G PP+ E ++ ++
Sbjct: 108 KTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIR 167
Query: 516 KLER 519
+ E
Sbjct: 168 RAEH 171
Score = 29.8 bits (66), Expect = 7.5
Identities = 21/141 (14%), Positives = 51/141 (36%), Gaps = 9/141 (6%)
Query: 250 DQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTE 309
+ + E ++A+ +L + + R ET + S LQ+ L+
Sbjct: 43 EYFIIQYQESLRIQAQFAQLGQLNPQERMSR----ETALQQKQVSLETWLQREAQTLQQY 98
Query: 310 NEDLNDEKKSLSLRVRE-----LETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDE 364
+L ++ + +R+ L+ E +K+ L + CE+L +
Sbjct: 99 RVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEI 158
Query: 365 NEEMKKELRYLEEEMDEMQDH 385
+ ++++R E ++
Sbjct: 159 IWQNRQQIRRAEHLCQQLPIP 179
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3,
CD40-binding protein, apoptosis; 2.80A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Length = 228
Score = 29.3 bits (65), Expect = 7.9
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 681 QLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLT 740
Q EE +K V L+ T LE + Q+ + L+++ S ++ L+
Sbjct: 2 QNWEEADSMK-------SSVESLQNRVTELES-VDKSAGQVARNTGLLESQLSRHDQMLS 53
Query: 741 AEQKQKALKEKELKTKES 758
+ A + + E+
Sbjct: 54 VHDIRLADMDLRFQVLET 71
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 29.3 bits (66), Expect = 8.2
Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 19/177 (10%)
Query: 278 LRRLASMETTTSKTTASELL--KLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK 335
L +L ++ K T L + E+ ++L +K+ + L+ K
Sbjct: 164 LCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMK 223
Query: 336 KS-NAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFR------- 387
K ER+ + + E++ ++ +++ L M+ ++
Sbjct: 224 KQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFV 283
Query: 388 EDQADE--------YSSLKKELEQTAK-NCRILSFKLRKSERRSEQLEAEKLEAEKK 435
D + + Q K N + + + + + +AEK EK+
Sbjct: 284 FDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 29.5 bits (67), Expect = 8.3
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 298 KLQQRVNEL--KTENEDL-NDEKKS--LSLRVRELETEAAAFKKSNAAEREAEALRTKLA 352
+ + R+ EL + E+ L ND + + +S L F+ L + L
Sbjct: 21 QKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRS----------LESDLQ 70
Query: 353 AAEGLCEELMDEN-EEMKKELRYLEEEMDEMQ 383
L EEL E E +K EL +++DE+
Sbjct: 71 GLLELMEELPAEEREALKPELEEAAKKLDELY 102
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 29.3 bits (65), Expect = 8.4
Identities = 23/211 (10%), Positives = 61/211 (28%), Gaps = 11/211 (5%)
Query: 632 LEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKK 691
LE +KF + E + ++ + L+ A R+ +L +
Sbjct: 12 LEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLT--EVRALLRKHEAFESDLAAHQD 69
Query: 692 EAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEK 751
++ A +L N+ + ++ L T ++L +K ++
Sbjct: 70 RVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQ 129
Query: 752 ELKTKESEINVLKNQ--------SSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDL 803
N + I E+++ ++ + TL + E + +
Sbjct: 130 LHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSL-ITAHEQFKATLPEADGERQSI 188
Query: 804 TNRYDILEGEHVDIKASLVKEKENNHGRLQQ 834
+ +E + + + +
Sbjct: 189 MAIQNEVEKVIQSYNIRISSSNPYSTVTMDE 219
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 28.5 bits (63), Expect = 8.5
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Query: 603 QIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERE 662
+E+ + +LE + E K E+ + K+ E ++E +
Sbjct: 7 LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH 66
Query: 663 RATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMT 722
A D K A R+L + +L + ++ A+ + K +LE + ++ NLKS E ++
Sbjct: 67 IAEDADRKYEEVA-RKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVE 125
Query: 723 K 723
+
Sbjct: 126 E 126
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 28.9 bits (65), Expect = 8.5
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 359 EELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELE 402
+ EN+ +K+ L L + E+ D E LK+ L+
Sbjct: 22 KNTYTENQHLKERLEELAQLESEV-----ADLKKENKDLKESLD 60
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 28.3 bits (64), Expect = 8.6
Identities = 14/79 (17%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 661 RERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQ 720
+ + +L AG +L + E++++ + QR ++ +++ +L+ + E +
Sbjct: 14 QTKYEELQQTAGRH-GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72
Query: 721 MTKTISDLQTKCSTLEKSL 739
+ D + K + LE++L
Sbjct: 73 GELALKDARNKLAELEEAL 91
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 29.2 bits (66), Expect = 9.7
Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 14/144 (9%)
Query: 298 KLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKS-------NAAEREAEALRTK 350
+ ++L + K L+ + + A K N E LR K
Sbjct: 507 TKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGK 566
Query: 351 LAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRI 410
L E + E K L + + + D + +Y + +EL I
Sbjct: 567 L---EEEYAPFASD-AEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASL---GNI 619
Query: 411 LSFKLRKSERRSEQLEAEKLEAEK 434
+ + E +Q K EA +
Sbjct: 620 IRGRYLAKEEEKKQAIRSKQEASQ 643
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 28.9 bits (65), Expect = 9.8
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 236 DTTETTLVNDNEYSDQIDLLRHELDNMKAK 265
D T L+ N+ I LLR EL+ ++ K
Sbjct: 174 DHTVCHLLFANQTEKDI-LLRPELEELRNK 202
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 29.2 bits (66), Expect = 10.0
Identities = 10/73 (13%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 543 ETLTRGGSQEDPTVLMRDLQDSMER-------EADLREQLRFAEE--ERYQRLYSVAR-D 592
+ L E+ + ++ +ME +++ + E ER++R+
Sbjct: 438 KDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSS 497
Query: 593 AFHPNLVQYLQIE 605
F+ +L+ +++
Sbjct: 498 VFNTDLLYTIELG 510
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.121 0.318
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,521,770
Number of extensions: 1043768
Number of successful extensions: 3521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2983
Number of HSP's successfully gapped: 615
Length of query: 1286
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1181
Effective length of database: 3,770,088
Effective search space: 4452473928
Effective search space used: 4452473928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 63 (28.8 bits)