RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12517
(1286 letters)
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 43.3 bits (101), Expect = 2e-04
Identities = 36/201 (17%), Positives = 67/201 (33%), Gaps = 13/201 (6%)
Query: 594 FHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKIT-- 651
N V + E + + E L+ ++ + KF I+EK +T
Sbjct: 567 KKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYS-FQVKFIKMIIEKELTVTNK 625
Query: 652 QLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLE 711
A I+E K G N E K A + E D ++
Sbjct: 626 PRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVI 685
Query: 712 ENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQS-SDN 770
+ + + ++ SLT E+ QK K+ + KE+E+ L S D
Sbjct: 686 NGPEELYGT-YEYLLGMRIW------SLTKERYQK--LLKQKQEKETELENLLKLSAKDI 736
Query: 771 VTKQITELKTQYEQEIKKLED 791
+ + Y++ +++ +
Sbjct: 737 WNTDLKAFEVGYQEFLQRDAE 757
Score = 31.0 bits (69), Expect = 1.1
Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 10/149 (6%)
Query: 243 VNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQR 302
V + + I L + K K + + + + E +
Sbjct: 622 VTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDT 681
Query: 303 VNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELM 362
N + E + L +R+ L E + ++ + T+L L + +
Sbjct: 682 ENVINGPEELYGTYEYLLGMRIWSLTKE-----RYQKLLKQKQEKETELENLLKLSAKDI 736
Query: 363 DENEEMKKELRYLEEEMDEMQDHFREDQA 391
+L+ E E E +
Sbjct: 737 -----WNTDLKAFEVGYQEFLQRDAEARG 760
>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate
dehydrogenase/cyclohydrolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 32.6 bits (74), Expect = 0.13
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 461 LANETAEKLQKDLKEATDKLERANGGKPPKLGAL---PKTPSVETAEKLQKDLKE 512
LA++ AE ++ ++ ++ + G+ P L + A QK +
Sbjct: 7 LASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSES 61
Score = 30.3 bits (68), Expect = 0.65
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 503 AEKLQKDLKEATDKLERANGGKPPKLGAL 531
AE ++ ++ ++ + G+ P L
Sbjct: 12 AETFNTEIINNVEEYKKTHNGQGPLLVGF 40
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 32.0 bits (72), Expect = 0.50
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 639 FETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRN 696
FE I E +KI L A R++ + ++ E+++LRE+ +L ++ +
Sbjct: 5 FEQPIAELEAKIDSLTAGSRQDEKLDINI--------DEEVHRLREKSVELTRKIFAD 54
>d1n7za_ b.127.1.1 (A:) Baseplate structural protein gp8
{Bacteriophage T4 [TaxId: 10665]}
Length = 328
Score = 31.5 bits (71), Expect = 0.63
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 8/98 (8%)
Query: 890 PPTPPTTEESQNRIRRAAFAAKKSVSTESDH--------TGESSSRALHRKGSLYRKSLS 941
PP P + + K + + D R + + +
Sbjct: 52 PPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSA 111
Query: 942 LEQTSQLAQEENIWKMTDDNDSSLTSFQSIDDAYENVK 979
++ +++ D D+ + S S+ D E +K
Sbjct: 112 PYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLK 149
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 269
Score = 31.2 bits (70), Expect = 0.69
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 345 EALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFR 387
AL E +E+ E+++ + LE++ D + +R
Sbjct: 227 LALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDSELERYR 269
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Length = 91
Score = 28.2 bits (63), Expect = 1.8
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 1188 LSELTSKVNELEEDRLLSSGRTNKIPGLKTRMELAWHKEREEQQRLLQETSTLARDLRQT 1247
LSE + L + R + L E + R Q+ + R
Sbjct: 4 LSEFMGDIVALVDKRWAGIHDIEHLA---NAFSLP---TPEIKVRFYQDLKRMFRLFPLG 57
Query: 1248 LFEVERERDKERLEAKRRFDQMKKTTEEEQEE 1279
+F E +R + D ++ EEE E
Sbjct: 58 VFSDEEQRQNLLQMCQNAIDMAIESEEEELSE 89
>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate
dehydrogenase/cyclohydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 125
Score = 28.5 bits (63), Expect = 2.3
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 463 NETAEKLQKDLKEATDKLERANGGKPPKLGAL 494
E + +++ LK +L+ G P+L L
Sbjct: 9 KEISAQIRARLKNQVTQLKEQVPGFTPRLAIL 40
Score = 28.5 bits (63), Expect = 2.7
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 501 ETAEKLQKDLKEATDKLERANGGKPPKLGAL 531
E + +++ LK +L+ G P+L L
Sbjct: 10 EISAQIRARLKNQVTQLKEQVPGFTPRLAIL 40
>d2oufa1 a.292.1.1 (A:13-92) Hypothetical protein HP0242
{Helicobacter pylori [TaxId: 210]}
Length = 80
Score = 27.4 bits (61), Expect = 2.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 338 NAAEREAEALRTKLAAAEGLCEE--LMDENEEMKKELRYLEEEMDEMQDH 385
+++E E L LA E E+ L ++ E K LR EE +++
Sbjct: 16 KLSKKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESR 65
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma
chain {Cow (Bos taurus) [TaxId: 9913]}
Length = 54
Score = 26.2 bits (58), Expect = 3.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 679 LNQLREELTQLKKEAQRNAEKVTK 702
+ Q R+ + QLK EA + KV+K
Sbjct: 2 IAQARKLVEQLKMEANIDRIKVSK 25
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 29.3 bits (64), Expect = 3.3
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 251 QIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQ 300
++D LR E + +K + + +D L ++ + + L+
Sbjct: 3 ELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLR 52
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 29.2 bits (65), Expect = 3.8
Identities = 28/169 (16%), Positives = 52/169 (30%), Gaps = 16/169 (9%)
Query: 256 RHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLND 315
EL + + LE + + T A L +L L
Sbjct: 338 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 397
Query: 316 EKKSLSLRVRELETEAAAFKKSNAAEREAEA-LRTKLAAAEGLCEELMDENEEMKKELRY 374
+ E++A+A L +L GL E+E++ E +
Sbjct: 398 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGL------EHEKLLDEYKE 451
Query: 375 LEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSE 423
L +++ E+ +++ELE + F +RR+E
Sbjct: 452 LLDQIAELLRIL-GSADRLMEVIREELELVREQ-----F---GDKRRTE 491
>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
(Bacillus anthracis) [TaxId: 1392]}
Length = 722
Score = 29.1 bits (65), Expect = 4.0
Identities = 42/254 (16%), Positives = 93/254 (36%), Gaps = 19/254 (7%)
Query: 53 TVSSPSLSSWTSASTIRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRESEKKNE 112
T+S + +S T S HGN +VS+ +S +S I S
Sbjct: 275 TISKNTSTSRTHTSE-----VHGNAEVHASFFDIGGSVSAGFSNSNSSTVAIDHSLSLAG 329
Query: 113 GRSWTSSTNLSSVSSSNDSQNSSRRPPPEDSSNEDDDYRSTKYVVRRRTSHLPATSTSSS 172
R+W + L++ ++ N++ R ++ + +T V+ + + + +
Sbjct: 330 ERTWAETMGLNTADTAR--LNANIRYVNTGTAPIYNVLPTTSLVLGKNQTLATIKAKENQ 387
Query: 173 NAEPSTSSNTTRTRSSASPRLKTPDKPSKADVDFILQVKDAKKTRRKENLETD-TESLAG 231
++ +N +++ A L D S + + ++ L+TD
Sbjct: 388 LSQILAPNNYYPSKNLAPIALNAQDDFSSTPITMNYNQFLELEKTKQLRLDTDQVYGNIA 447
Query: 232 TETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASM------E 285
T + + + +S+ + ++ A + +++ RR+A++ E
Sbjct: 448 TYNFENGRVRVDTGSNWSEVLP----QIQETTA-RIIFNGKDLNLVERRIAAVNPSDPLE 502
Query: 286 TTTSKTTASELLKL 299
TT T E LK+
Sbjct: 503 TTKPDMTLKEALKI 516
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 99
Score = 26.8 bits (59), Expect = 5.6
Identities = 15/82 (18%), Positives = 31/82 (37%)
Query: 371 ELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKL 430
E + ++E EM+D Y+SL ++ A+ L ++ +
Sbjct: 2 EPKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVLAA 61
Query: 431 EAEKKCREVCGGMEGVNKVERI 452
K+ +V ++ N +E I
Sbjct: 62 RNVKEAEQVITILQIANAIEDI 83
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.5 bits (63), Expect = 6.2
Identities = 19/110 (17%), Positives = 40/110 (36%)
Query: 359 EELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKS 418
+ L + +++ E L++E D + E + L +E+ + LRK
Sbjct: 256 DALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKL 315
Query: 419 ERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEK 468
+L+ + E E R+ + + LE E++ +E
Sbjct: 316 REAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRG 365
>d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacteriophage
T7 [TaxId: 10760]}
Length = 494
Score = 28.2 bits (61), Expect = 8.2
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 3/91 (3%)
Query: 352 AAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRIL 411
A E L EL E+ ++L E + + K L + +
Sbjct: 27 KAIEELYVELAARRSELLRKLT---ETFGSWYQPKGGTEMFCHPRTGKPLPKYPRIKTPK 83
Query: 412 SFKLRKSERRSEQLEAEKLEAEKKCREVCGG 442
+ K + Q E + V G
Sbjct: 84 VGGIFKKPKNKAQREGREPCELDTREYVAGA 114
>d2ajfa1 d.92.1.5 (A:19-615) Angiotensin converting enzyme 2, ACE2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 597
Score = 28.2 bits (62), Expect = 8.8
Identities = 30/210 (14%), Positives = 63/210 (30%), Gaps = 12/210 (5%)
Query: 234 TTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDI--LLRRLASMET-TTSK 290
T+ TE + N N D+ E + E + + L+ L + S+
Sbjct: 33 NTNITEENVQNMNNAGDKWSAFLKEQSTLAQMYPLQEIQNLTVKLQLQALQQNGSSVLSE 92
Query: 291 TTASELLKLQQRVNEL--KTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALR 348
+ L + ++ + + + ++ ++ L L E A + +
Sbjct: 93 DKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNERLWAWESWRS 152
Query: 349 TKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYS-----SLKKELEQ 403
L EE + EM + Y E+ + E + L +++E
Sbjct: 153 EVGKQLRPLYEEYVVLKNEMARANHY--EDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEH 210
Query: 404 TAKNCRILSFKLRKSERRSEQLEAEKLEAE 433
T + + L L R +
Sbjct: 211 TFEEIKPLYEHLHAYVRAKLMNAYPSYISP 240
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 27.7 bits (60), Expect = 9.8
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
Query: 704 ERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVL 763
++ T E N+K + + L ++ + Q A KE+E K K +E +
Sbjct: 4 SQELTQREANVKKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQK 63
Query: 764 KNQSSDNVTKQITELKTQY--EQEIKKLEDTLVQERQEYEDLTNR 806
D + E + K+ +L+++ ++ NR
Sbjct: 64 VQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNR 108
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 171
Score = 27.1 bits (59), Expect = 10.0
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 445 GVNKVERIQAL---EKELKLANETAEKLQKDLKEATDKLE 481
G +++I ELK ++A L+K L + +LE
Sbjct: 131 GGTGLKQIIESPLSADELKKMQDSAATLKKVLNDGLAELE 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.305 0.121 0.318
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,126,258
Number of extensions: 189580
Number of successful extensions: 741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 125
Length of query: 1286
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1190
Effective length of database: 1,089,516
Effective search space: 1296524040
Effective search space used: 1296524040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 59 (26.8 bits)