Query psy12521
Match_columns 313
No_of_seqs 204 out of 1490
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 21:28:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07587 ML_beta-AS mammalian-l 100.0 7E-55 1.5E-59 406.4 27.4 270 2-293 87-362 (363)
2 PLN00202 beta-ureidopropionase 100.0 2.1E-53 4.5E-58 400.5 27.2 271 2-295 110-385 (405)
3 TIGR03381 agmatine_aguB N-carb 100.0 6.8E-51 1.5E-55 368.8 25.8 253 2-290 16-278 (279)
4 cd07568 ML_beta-AS_like mammal 100.0 2.3E-50 4.9E-55 366.9 26.9 255 2-292 27-285 (287)
5 PLN02747 N-carbamolyputrescine 100.0 2.6E-48 5.6E-53 354.9 25.9 262 2-295 22-293 (296)
6 PRK10438 C-N hydrolase family 100.0 3.4E-48 7.3E-53 347.0 24.8 236 2-288 20-255 (256)
7 cd07564 nitrilases_CHs Nitrila 100.0 1.7E-48 3.8E-53 356.1 23.4 267 2-292 17-295 (297)
8 cd07580 nitrilase_2 Uncharacte 100.0 7.9E-48 1.7E-52 346.9 23.6 245 2-288 16-268 (268)
9 cd07579 nitrilase_1_R2 Second 100.0 4.6E-48 1E-52 350.0 21.4 232 2-289 15-269 (279)
10 PLN02504 nitrilase 100.0 1.1E-47 2.4E-52 356.4 24.2 269 2-297 41-328 (346)
11 cd07573 CPA N-carbamoylputresc 100.0 3.6E-47 7.9E-52 345.3 26.0 260 2-292 16-283 (284)
12 KOG0807|consensus 100.0 1.1E-48 2.4E-53 329.5 14.5 251 2-290 31-290 (295)
13 cd07569 DCase N-carbamyl-D-ami 100.0 2.7E-47 5.9E-52 349.1 24.6 255 2-292 22-301 (302)
14 cd07576 R-amidase_like Pseudom 100.0 2.8E-47 6.2E-52 340.4 23.9 238 2-286 16-254 (254)
15 cd07565 aliphatic_amidase alip 100.0 5.9E-47 1.3E-51 344.6 25.9 240 2-290 21-266 (291)
16 cd07583 nitrilase_5 Uncharacte 100.0 7.1E-47 1.5E-51 337.9 24.9 237 2-284 16-253 (253)
17 cd07584 nitrilase_6 Uncharacte 100.0 9.6E-47 2.1E-51 337.9 24.8 238 2-284 16-257 (258)
18 PLN02798 nitrilase 100.0 1.6E-46 3.6E-51 341.4 25.3 249 2-289 26-283 (286)
19 cd07585 nitrilase_7 Uncharacte 100.0 3E-46 6.4E-51 335.3 24.6 241 2-288 16-261 (261)
20 cd07567 biotinidase_like bioti 100.0 6.9E-47 1.5E-51 343.7 20.2 236 2-272 24-280 (299)
21 cd07572 nit Nit1, Nit 2, and r 100.0 7.6E-46 1.7E-50 333.2 24.2 244 2-284 15-265 (265)
22 cd07581 nitrilase_3 Uncharacte 100.0 1.9E-45 4.2E-50 328.9 24.5 238 2-284 14-255 (255)
23 cd07586 nitrilase_8 Uncharacte 100.0 1.6E-45 3.4E-50 332.0 23.7 244 2-289 16-266 (269)
24 cd07577 Ph0642_like Pyrococcus 100.0 1.7E-45 3.7E-50 330.1 21.4 239 2-288 16-259 (259)
25 cd07578 nitrilase_1_R1 First n 100.0 3.2E-45 6.9E-50 328.2 22.5 240 2-287 17-258 (258)
26 cd07582 nitrilase_4 Uncharacte 100.0 8.5E-45 1.8E-49 331.4 25.2 251 2-281 21-287 (294)
27 cd07575 Xc-1258_like Xanthomon 100.0 3.5E-44 7.7E-49 320.4 24.2 234 2-285 17-250 (252)
28 COG0388 Predicted amidohydrola 100.0 6.8E-44 1.5E-48 322.3 25.2 245 2-287 19-266 (274)
29 PRK13286 amiE acylamide amidoh 100.0 5.3E-44 1.1E-48 330.7 24.9 233 2-280 33-273 (345)
30 cd07570 GAT_Gln-NAD-synth Glut 100.0 1.4E-44 3.1E-49 324.4 19.5 243 2-287 16-260 (261)
31 cd07574 nitrilase_Rim1_like Un 100.0 1.9E-44 4.2E-49 326.8 20.3 251 2-287 18-280 (280)
32 PRK13287 amiF formamidase; Pro 100.0 1.5E-43 3.2E-48 327.2 25.3 233 2-279 34-271 (333)
33 cd07197 nitrilase Nitrilase su 100.0 5.4E-42 1.2E-46 305.6 25.3 234 2-282 15-251 (253)
34 cd07571 ALP_N-acyl_transferase 100.0 1.2E-40 2.5E-45 300.5 18.9 211 2-270 23-252 (270)
35 KOG0808|consensus 100.0 4.1E-40 8.9E-45 280.4 20.3 273 5-297 100-376 (387)
36 PRK13981 NAD synthetase; Provi 100.0 9.1E-40 2E-44 320.9 21.8 224 2-269 17-243 (540)
37 KOG0806|consensus 100.0 6.2E-40 1.3E-44 289.3 13.4 253 2-293 30-296 (298)
38 PRK02628 nadE NAD synthetase; 100.0 8.9E-39 1.9E-43 319.9 23.4 243 2-284 29-295 (679)
39 KOG0805|consensus 100.0 5.2E-38 1.1E-42 265.7 15.7 269 3-298 35-322 (337)
40 cd07566 ScNTA1_like Saccharomy 100.0 4E-37 8.8E-42 279.9 16.9 205 2-244 16-265 (295)
41 PLN02339 NAD+ synthase (glutam 100.0 2.1E-36 4.6E-41 302.3 22.1 241 2-283 20-290 (700)
42 PRK00302 lnt apolipoprotein N- 100.0 2.3E-33 5E-38 273.8 17.5 210 2-269 242-471 (505)
43 TIGR00546 lnt apolipoprotein N 100.0 4.5E-33 9.7E-38 263.7 14.8 190 2-249 182-391 (391)
44 PF00795 CN_hydrolase: Carbon- 100.0 2.2E-30 4.9E-35 220.5 10.6 155 2-181 18-186 (186)
45 PRK12291 apolipoprotein N-acyl 100.0 8.8E-28 1.9E-32 228.1 15.9 177 2-246 217-412 (418)
46 COG0815 Lnt Apolipoprotein N-a 99.9 9.2E-26 2E-30 218.3 17.0 196 16-269 266-482 (518)
47 PRK13825 conjugal transfer pro 99.9 2.5E-23 5.5E-28 195.1 18.2 167 5-211 209-387 (388)
48 KOG2303|consensus 99.6 1.5E-15 3.3E-20 140.7 9.2 232 1-277 20-285 (706)
49 cd07576 R-amidase_like Pseudom 83.3 7.8 0.00017 34.0 8.6 70 163-250 23-104 (254)
50 cd07581 nitrilase_3 Uncharacte 83.2 6.5 0.00014 34.6 8.1 72 163-251 21-105 (255)
51 cd07565 aliphatic_amidase alip 82.7 7 0.00015 35.5 8.2 43 73-116 189-232 (291)
52 cd07568 ML_beta-AS_like mammal 82.3 7.3 0.00016 35.0 8.2 70 164-250 35-120 (287)
53 TIGR03381 agmatine_aguB N-carb 81.5 8.6 0.00019 34.3 8.3 70 163-250 23-108 (279)
54 PLN02747 N-carbamolyputrescine 81.3 8 0.00017 35.0 8.1 70 163-250 29-114 (296)
55 PF00795 CN_hydrolase: Carbon- 80.8 9.4 0.0002 31.6 7.8 69 164-250 26-113 (186)
56 cd07564 nitrilases_CHs Nitrila 80.4 10 0.00023 34.3 8.6 72 163-252 24-120 (297)
57 cd07583 nitrilase_5 Uncharacte 78.8 13 0.00027 32.7 8.4 71 164-251 24-105 (253)
58 PLN02798 nitrilase 77.6 13 0.00029 33.4 8.3 73 164-251 34-118 (286)
59 cd07584 nitrilase_6 Uncharacte 75.9 19 0.00041 31.7 8.7 71 164-250 24-109 (258)
60 cd07572 nit Nit1, Nit 2, and r 73.8 20 0.00042 31.7 8.2 73 163-250 22-107 (265)
61 cd07197 nitrilase Nitrilase su 73.5 21 0.00046 31.0 8.3 69 164-250 23-105 (253)
62 cd07587 ML_beta-AS mammalian-l 73.4 17 0.00036 34.3 7.9 73 164-251 95-184 (363)
63 PRK13286 amiE acylamide amidoh 73.4 16 0.00036 34.1 7.8 43 73-116 202-245 (345)
64 cd07573 CPA N-carbamoylputresc 72.3 21 0.00045 31.9 8.1 71 163-250 23-109 (284)
65 cd07580 nitrilase_2 Uncharacte 71.6 24 0.00052 31.3 8.3 40 74-114 187-227 (268)
66 PLN02504 nitrilase 70.5 26 0.00057 32.7 8.5 19 164-182 49-67 (346)
67 PLN00202 beta-ureidopropionase 70.3 20 0.00043 34.4 7.7 74 163-251 117-205 (405)
68 KOG2792|consensus 69.7 7.2 0.00016 34.7 4.2 47 73-121 213-262 (280)
69 cd07586 nitrilase_8 Uncharacte 69.4 21 0.00046 31.6 7.5 43 73-115 186-228 (269)
70 cd07579 nitrilase_1_R2 Second 67.1 35 0.00075 30.7 8.4 46 164-209 23-77 (279)
71 cd07582 nitrilase_4 Uncharacte 67.0 30 0.00065 31.2 8.0 66 171-251 41-123 (294)
72 cd07567 biotinidase_like bioti 66.7 18 0.0004 33.0 6.5 42 73-117 218-260 (299)
73 cd07569 DCase N-carbamyl-D-ami 66.3 33 0.00071 31.1 8.2 73 164-250 30-121 (302)
74 cd07566 ScNTA1_like Saccharomy 65.5 31 0.00068 31.4 7.8 66 171-251 35-115 (295)
75 cd07575 Xc-1258_like Xanthomon 63.5 39 0.00085 29.6 7.9 68 164-250 25-102 (252)
76 cd07585 nitrilase_7 Uncharacte 62.0 49 0.0011 29.1 8.3 68 164-249 24-103 (261)
77 PF01784 NIF3: NIF3 (NGG1p int 61.0 34 0.00073 30.2 6.9 58 152-210 34-95 (241)
78 PF02630 SCO1-SenC: SCO1/SenC; 60.6 21 0.00045 29.7 5.3 46 73-118 125-172 (174)
79 PF09587 PGA_cap: Bacterial ca 60.1 18 0.0004 31.9 5.2 76 4-113 170-246 (250)
80 KOG0808|consensus 59.5 11 0.00025 33.4 3.5 56 25-80 294-353 (387)
81 cd07570 GAT_Gln-NAD-synth Glut 57.6 23 0.00051 31.1 5.4 44 73-116 184-227 (261)
82 cd07574 nitrilase_Rim1_like Un 55.5 31 0.00066 30.8 5.9 69 164-249 26-114 (280)
83 cd07571 ALP_N-acyl_transferase 55.0 56 0.0012 29.1 7.4 72 164-251 31-104 (270)
84 cd07577 Ph0642_like Pyrococcus 54.8 64 0.0014 28.3 7.8 43 74-116 175-221 (259)
85 cd07578 nitrilase_1_R1 First n 54.7 66 0.0014 28.2 7.8 46 164-209 25-84 (258)
86 PRK09437 bcp thioredoxin-depen 53.7 23 0.00049 28.4 4.3 18 102-119 121-138 (154)
87 PF07355 GRDB: Glycine/sarcosi 51.2 56 0.0012 30.5 6.8 62 148-209 48-117 (349)
88 PF10087 DUF2325: Uncharacteri 49.0 45 0.00098 24.7 5.0 41 170-214 46-86 (97)
89 COG0388 Predicted amidohydrola 48.2 58 0.0013 28.9 6.5 44 73-116 187-231 (274)
90 PRK13287 amiF formamidase; Pro 47.3 90 0.002 29.0 7.7 41 76-116 204-244 (333)
91 KOG0807|consensus 46.4 66 0.0014 28.5 6.0 77 162-252 37-125 (295)
92 PRK13981 NAD synthetase; Provi 45.6 74 0.0016 31.6 7.3 43 73-116 183-226 (540)
93 COG1504 Uncharacterized conser 45.0 1.1E+02 0.0024 23.6 6.3 92 88-194 9-107 (121)
94 KOG0806|consensus 44.8 21 0.00046 32.5 2.9 80 98-181 125-225 (298)
95 TIGR00486 YbgI_SA1388 dinuclea 43.4 94 0.002 27.5 6.9 57 152-210 38-98 (249)
96 smart00481 POLIIIAc DNA polyme 43.0 85 0.0019 21.1 5.3 19 5-23 15-33 (67)
97 TIGR01917 gly_red_sel_B glycin 41.6 93 0.002 29.9 6.8 63 147-210 43-114 (431)
98 TIGR01918 various_sel_PB selen 41.2 94 0.002 29.9 6.7 63 147-210 43-114 (431)
99 PRK10438 C-N hydrolase family 41.0 1.1E+02 0.0024 26.9 7.1 37 171-207 33-78 (256)
100 cd02968 SCO SCO (an acronym fo 41.0 79 0.0017 24.5 5.6 16 103-118 126-141 (142)
101 COG0252 AnsB L-asparaginase/ar 40.3 2.2E+02 0.0047 26.8 9.0 64 149-214 230-294 (351)
102 PRK09461 ansA cytoplasmic aspa 40.0 1.7E+02 0.0036 27.3 8.3 66 149-215 210-276 (335)
103 PRK10799 metal-binding protein 39.9 1.2E+02 0.0026 26.7 7.1 57 152-209 37-96 (247)
104 COG1225 Bcp Peroxiredoxin [Pos 38.7 52 0.0011 27.1 4.1 24 100-123 119-142 (157)
105 COG2089 SpsE Sialic acid synth 36.7 78 0.0017 29.3 5.2 78 3-89 28-109 (347)
106 PF13342 Toprim_Crpt: C-termin 35.3 85 0.0018 21.4 4.1 39 73-114 19-57 (62)
107 COG1999 Uncharacterized protei 33.6 1.2E+02 0.0026 26.0 5.9 99 4-120 87-190 (207)
108 cd08362 BphC5-RrK37_N_like N-t 33.5 1.1E+02 0.0024 22.7 5.1 43 73-117 73-115 (120)
109 PF10042 DUF2278: Uncharacteri 33.3 42 0.00092 28.9 2.9 30 4-36 121-150 (206)
110 PF09587 PGA_cap: Bacterial ca 32.4 3.4E+02 0.0074 23.7 9.7 44 170-213 181-226 (250)
111 smart00642 Aamy Alpha-amylase 31.6 1.2E+02 0.0026 25.0 5.3 23 73-95 73-95 (166)
112 PRK09856 fructoselysine 3-epim 30.3 44 0.00095 29.6 2.7 60 3-88 88-147 (275)
113 cd00411 Asparaginase Asparagin 29.8 3E+02 0.0064 25.4 8.1 64 149-214 210-273 (323)
114 PF12681 Glyoxalase_2: Glyoxal 29.7 2.1E+02 0.0046 20.5 6.5 40 73-116 68-107 (108)
115 cd08357 Glo_EDI_BRP_like_18 Th 29.1 1.5E+02 0.0033 22.0 5.3 42 73-114 79-120 (125)
116 TIGR00530 AGP_acyltrn 1-acyl-s 27.9 1.5E+02 0.0032 22.4 5.1 22 7-31 78-99 (130)
117 smart00854 PGA_cap Bacterial c 27.9 1.2E+02 0.0025 26.5 4.9 19 4-23 159-177 (239)
118 KOG0081|consensus 27.8 43 0.00092 27.8 1.9 107 88-209 42-161 (219)
119 PF10649 DUF2478: Protein of u 27.6 91 0.002 25.7 3.9 21 3-23 78-98 (159)
120 PTZ00314 inosine-5'-monophosph 27.5 4.4E+02 0.0095 26.0 9.3 93 103-208 194-287 (495)
121 PF07302 AroM: AroM protein; 27.0 59 0.0013 28.4 2.7 46 160-212 166-211 (221)
122 smart00870 Asparaginase Aspara 26.9 3.7E+02 0.008 24.8 8.2 64 149-214 212-275 (323)
123 cd07254 Glo_EDI_BRP_like_20 Th 26.2 1.8E+02 0.0039 21.5 5.2 45 73-119 73-117 (120)
124 PLN02274 inosine-5'-monophosph 25.8 2.3E+02 0.005 28.1 7.0 59 149-209 237-295 (505)
125 cd07381 MPP_CapA CapA and rela 25.8 1.6E+02 0.0034 25.6 5.4 19 4-23 161-179 (239)
126 PRK06724 hypothetical protein; 24.2 2.3E+02 0.0049 22.0 5.5 42 73-115 78-119 (128)
127 PF08821 CGGC: CGGC domain; I 24.0 2.6E+02 0.0056 21.3 5.5 19 5-23 52-70 (107)
128 KOG2733|consensus 23.7 2.3E+02 0.005 26.8 6.0 139 153-305 66-237 (423)
129 PRK13209 L-xylulose 5-phosphat 23.7 70 0.0015 28.5 2.8 21 3-23 97-117 (283)
130 COG1929 Glycerate kinase [Carb 23.5 1.3E+02 0.0029 28.2 4.5 42 17-91 283-326 (378)
131 cd07261 Glo_EDI_BRP_like_11 Th 23.4 2.2E+02 0.0048 20.8 5.2 40 73-117 74-113 (114)
132 cd02971 PRX_family Peroxiredox 23.3 1.7E+02 0.0037 22.5 4.7 22 99-120 108-129 (140)
133 PF09142 TruB_C: tRNA Pseudour 22.7 94 0.002 20.7 2.5 34 196-254 10-43 (56)
134 smart00037 CNX Connexin homolo 22.6 40 0.00086 20.0 0.6 10 154-163 21-30 (34)
135 PRK13210 putative L-xylulose 5 22.3 84 0.0018 27.8 3.0 20 4-23 93-112 (284)
136 TIGR00546 lnt apolipoprotein N 22.0 2.9E+02 0.0062 26.0 6.7 65 172-251 197-264 (391)
137 TIGR00520 asnASE_II L-asparagi 21.9 4.8E+02 0.01 24.4 8.0 64 149-214 239-302 (349)
138 PF00809 Pterin_bind: Pterin b 21.9 1.6E+02 0.0034 25.3 4.5 56 151-213 71-126 (210)
139 TIGR00542 hxl6Piso_put hexulos 21.5 91 0.002 27.7 3.1 23 3-28 92-114 (279)
140 PRK10785 maltodextrin glucosid 21.4 1.8E+02 0.0038 29.5 5.3 67 4-89 178-245 (598)
141 cd07988 LPLAT_ABO13168-like Ly 20.5 2.8E+02 0.006 22.6 5.5 15 73-87 114-128 (163)
142 PF13788 DUF4180: Domain of un 20.4 1.2E+02 0.0027 23.4 3.1 28 4-34 21-48 (113)
143 PTZ00253 tryparedoxin peroxida 20.1 2E+02 0.0042 24.3 4.7 33 75-115 109-141 (199)
No 1
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=7e-55 Score=406.39 Aligned_cols=270 Identities=66% Similarity=1.085 Sum_probs=231.1
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCC-----ccccccccccCccccCCCCCcccccCCCccchHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKP-----AHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFP 76 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (313)
.|++++.++|++|+++|||||| |||++++||... ++.++++ ...+++.+ +.|+
T Consensus 87 ~nl~ki~~~i~~Aa~~gadLiv---fPE~~l~g~~~~~~~~~~~~~~ae-------~~~~g~~~------------~~l~ 144 (363)
T cd07587 87 AIHDRIKKIIEAAAMAGVNIIC---FQEAWTMPFAFCTREKLPWCEFAE-------SAEDGPTT------------KFCQ 144 (363)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---ccccccCCccccccccchHHHHhh-------ccCCChHH------------HHHH
Confidence 4789999999999999999999 999999987321 1223343 22357788 9999
Q ss_pred HHHHHcCcEEEeeceeecCC-CCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEe
Q psy12521 77 QLCIKYNMVIVSPILERDDV-TDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINI 155 (313)
Q Consensus 77 ~lA~~~~i~iv~G~~~~~~~-~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~I 155 (313)
++|++++++|++|+.++++. .+++|||+++|+|+|+++++|||+||++.+.+.|+.+|.+|+..+.+|+++++|||++|
T Consensus 145 ~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~griG~~I 224 (363)
T cd07587 145 ELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGKIAVNI 224 (363)
T ss_pred HHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCceEEEEE
Confidence 99999999999999887642 26899999999999999999999999987778899999999855789999999999999
Q ss_pred ecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCccee
Q psy12521 156 CYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGH 235 (313)
Q Consensus 156 C~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~ 235 (313)
|||++|||++|.++++|||||++|++|+......+|..++++||+||++||++||++|.+..++.+++++|.+.+.+...
T Consensus 225 CyD~~fPe~~r~la~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~~~~~ 304 (363)
T cd07587 225 CYGRHHPLNWLMYGLNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHKDFGH 304 (363)
T ss_pred ecccCCcHHHHHHHHcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccccccc
Confidence 99999999999999999999999999986545579999999999999999999999998754444444444332223246
Q ss_pred eeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhhhhhc
Q psy12521 236 FYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMS 293 (313)
Q Consensus 236 ~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~~~~~ 293 (313)
|+|+|+|++|+|++++++...+|++++++||++.+++.|..++++.++|+++|..++.
T Consensus 305 f~G~S~Ii~P~G~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~~~r~~~y~~~~~ 362 (363)
T cd07587 305 FYGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRMTARYEMYADFLA 362 (363)
T ss_pred ccceeEEECCCCCCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCccCCHHHHHHHhc
Confidence 8899999999999999887678999999999999999999999999999999987654
No 2
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=2.1e-53 Score=400.49 Aligned_cols=271 Identities=59% Similarity=1.003 Sum_probs=232.5
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCC----CccccccccccCccccCCCCCcccccCCCccchHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGK----PAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQ 77 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (313)
.|++++.+++++|+++|||||| |||+|++|+.. ..+.++++ . .+++.+ +.|++
T Consensus 110 ~nl~~~~~li~~Aa~~gadLVv---fPE~~~~g~~~~~~~~~~~~~ae-------~-~~g~~~------------~~l~~ 166 (405)
T PLN00202 110 AIMDKVKPMIDAAGAAGVNILC---LQEAWTMPFAFCTREKRWCEFAE-------P-VDGEST------------KFLQE 166 (405)
T ss_pred HHHHHHHHHHHHHHHCCCCEEE---ecchhccccccccccchHHHHhh-------h-CCCHHH------------HHHHH
Confidence 4789999999999999999999 99999988731 11333444 2 246777 99999
Q ss_pred HHHHcCcEEEeeceeecCC-CCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEee
Q psy12521 78 LCIKYNMVIVSPILERDDV-TDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINIC 156 (313)
Q Consensus 78 lA~~~~i~iv~G~~~~~~~-~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC 156 (313)
+|++++++|++|+.+++.. .+++|||+++|+++|+++++|||+||++++++.|+.+|.+|+.++.+|+++++|||++||
T Consensus 167 lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~~vf~t~~gkiGv~IC 246 (405)
T PLN00202 167 LARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNIC 246 (405)
T ss_pred HHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCceEEEeCCCeEEEEEc
Confidence 9999999999998886531 257999999999999999999999999988889999999998656899999999999999
Q ss_pred cCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceee
Q psy12521 157 YGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHF 236 (313)
Q Consensus 157 ~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~ 236 (313)
||++|||++|.++.+|||+|++|++|+......+|..++++||+||++||++||++|.+..++.+.+.+|.+.+.+...|
T Consensus 247 YD~~FPE~~r~la~~GAdiIl~Psa~~~~~~~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~~~~f 326 (405)
T PLN00202 247 YGRHHPLNWLAFGLNGAEIVFNPSATVGDLSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHF 326 (405)
T ss_pred cccccHHHHHHHHHCCCcEEEECCCCCCccCHHHHHHHHHHHHHhcCCEEEEeccccccccccccccccccccccccccc
Confidence 99999999999999999999999999765556789999999999999999999999986544444444454332332468
Q ss_pred eeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhhhhhcCc
Q psy12521 237 YGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMSGP 295 (313)
Q Consensus 237 ~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~~~~~~~ 295 (313)
+|+|+|++|+|++++++...+|++++++||++.++++|..++++.+||+++|...+.+.
T Consensus 327 ~G~S~Iv~P~G~vla~~~~~~E~llvadIDl~~v~~~R~~~~~~~~rR~~ly~~~~~~~ 385 (405)
T PLN00202 327 YGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMTARYEMYADFFAEY 385 (405)
T ss_pred cceeEEEcCCCCEeccCCCCCCcEEEEEeCHHHHHHHHHhCCcccccCHhHHHHHHHhh
Confidence 99999999999999998766899999999999999999999999999999999888753
No 3
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=6.8e-51 Score=368.76 Aligned_cols=253 Identities=26% Similarity=0.420 Sum_probs=217.0
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCc----cccccccccCccccCCCCCcccccCCCccchHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPA----HTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQ 77 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (313)
+|++++.+++++|+++|||||| |||++++||.... +.+.++ ...+++.+ +.|++
T Consensus 16 ~Nl~~~~~~i~~A~~~gadliv---fPE~~~~gy~~~~~~~~~~~~a~-------~~~~~~~~------------~~l~~ 73 (279)
T TIGR03381 16 TNIARAERLVREAAARGAQIIL---LPELFEGPYFCKDQDEDYFALAQ-------PVEGHPAI------------KRFQA 73 (279)
T ss_pred HHHHHHHHHHHHHHHCCCCEEE---cccccCCCCcCCccccchHhhcC-------cCCCChHH------------HHHHH
Confidence 5899999999999999999999 9999999983211 111111 11124555 99999
Q ss_pred HHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeec
Q psy12521 78 LCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICY 157 (313)
Q Consensus 78 lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~ 157 (313)
+|++++++|++|+.++.+ +++|||+++|+|+|+++++|+|+||+..+.+.|+.+|++|+..+.+|+++++|+|++|||
T Consensus 74 ~a~~~~i~i~~g~~~~~~--~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~ 151 (279)
T TIGR03381 74 LAKELGVVIPVSFFEKAG--NAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICW 151 (279)
T ss_pred HHHHcCcEEEEeeeecCC--CceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEEEc
Confidence 999999999999988866 789999999999999999999999986555678899999985589999999999999999
Q ss_pred CCccchHHHHHHhCCCcEEEEeCCCCCC------CChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCC
Q psy12521 158 GRHHPLNWLMFGLNGAEIVFNPSATITG------LSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHT 231 (313)
Q Consensus 158 D~~~pe~~r~~~~~Gadlil~ps~~~~~------~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~ 231 (313)
|++||+++|.++++|||+|++|++|+.. ....+|+.++++||+||++|+++||++|.+... .++
T Consensus 152 D~~fpe~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~-----~~~----- 221 (279)
T TIGR03381 152 DQWFPETARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGD-----GGE----- 221 (279)
T ss_pred CCcChHHHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccCCC-----CCc-----
Confidence 9999999999999999999999997542 234689888999999999999999999976310 001
Q ss_pred cceeeeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhhh
Q psy12521 232 QFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQ 290 (313)
Q Consensus 232 ~~~~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~~ 290 (313)
..|.|.|+|++|+|+++++++.++++++++++|++.++..|..++++.+|||++|..
T Consensus 222 --~~~~G~S~i~~p~G~il~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~r~~~y~~ 278 (279)
T TIGR03381 222 --QTFYGSSFIADHTGELVAEAGRSEEAVLVATFDLDEIAKQRAAWGFFRDRRPELYGP 278 (279)
T ss_pred --ceEeeeEEEECCCCcEeecCCCCCCceEEEEeCHHHHHHHHhcCchhhhCChhhccC
Confidence 478999999999999999998778999999999999999999999999999999964
No 4
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=2.3e-50 Score=366.95 Aligned_cols=255 Identities=46% Similarity=0.737 Sum_probs=220.8
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCc----cccccccccCccccCCCCCcccccCCCccchHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPA----HTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQ 77 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (313)
+|++++.+++++|+++|||||| |||++++||.... +.+.++ ...+++.+ +.|++
T Consensus 27 ~nl~~~~~~i~~A~~~gadlvv---fPE~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~------------~~l~~ 84 (287)
T cd07568 27 AMIQKHVTMIREAAEAGAQIVC---LQEIFYGPYFCAEQDTKWYEFAE-------EIPNGPTT------------KRFAA 84 (287)
T ss_pred HHHHHHHHHHHHHHHcCCcEEE---cccccCCCCCccccccchhhhcc-------cCCCChHH------------HHHHH
Confidence 5788999999999999999999 9999999873211 111222 21245666 99999
Q ss_pred HHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeec
Q psy12521 78 LCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICY 157 (313)
Q Consensus 78 lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~ 157 (313)
+|++++++|++|+.++.. ++++||++++|+|+|+++++|+|+||++++++.|..+|.+|+..+.+|+++++|+|++|||
T Consensus 85 ~a~~~~i~ii~g~~~~~~-~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~~~f~~~~~~iG~~ICy 163 (287)
T cd07568 85 LAKEYNMVLILPIYEKEQ-GGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPVFDTAFGKIGVYICY 163 (287)
T ss_pred HHHHCCEEEEEEeEEEcC-CCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCCceEEcCCceEEEEEEe
Confidence 999999999999888753 2789999999999999999999999998888889999999985479999999999999999
Q ss_pred CCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeee
Q psy12521 158 GRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFY 237 (313)
Q Consensus 158 D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~ 237 (313)
|++||+++|.++++|||+|++|++++.......|...+++||+||++|++.+|++|.... + +...|.
T Consensus 164 D~~fpe~~r~la~~Ga~li~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~--------~-----~~~~~~ 230 (287)
T cd07568 164 DRHFPEGWRALGLNGAEIVFNPSATVAGLSEYLWKLEQPAAAVANGYFVGAINRVGTEAP--------W-----NIGEFY 230 (287)
T ss_pred cccCchHHHHHHHCCCeEEEECCcCCCCCchhhhHHHHHHHHHHCCcEEEEeccccccCC--------C-----ccceEe
Confidence 999999999999999999999999976545568988889999999999999999997531 0 003688
Q ss_pred eeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhhhhh
Q psy12521 238 GSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSM 292 (313)
Q Consensus 238 G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~~~~ 292 (313)
|+|+|++|+|+++++++.+++++++++||++.++..|..++++++||+++|+.++
T Consensus 231 G~S~ii~p~G~il~~~~~~~~~~l~a~id~~~~~~~R~~~~~~~~~r~~~y~~~~ 285 (287)
T cd07568 231 GSSYFVDPRGQFVASASRDKDELLVAELDLDLIREVRDTWQFYRDRRPETYGELT 285 (287)
T ss_pred ceeEEECCCceEEEecCCCCCeEEEEEecHHHHHHHHhhCchhhhcCHHHhHHhh
Confidence 9999999999999999878899999999999999999999999999999998654
No 5
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=2.6e-48 Score=354.93 Aligned_cols=262 Identities=24% Similarity=0.355 Sum_probs=218.9
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCC----ccccccccccCccccCCCCCcccccCCCccchHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKP----AHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQ 77 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (313)
+|++++.+++++|+++|||||| |||++++|+... ++.+.++ ....++.+ +.|++
T Consensus 22 ~N~~~i~~~i~~A~~~gadlvv---fPE~~l~g~~~~~~~~~~~~~~~-------~~~~~~~~------------~~l~~ 79 (296)
T PLN02747 22 ANVDKAERLVREAHAKGANIIL---IQELFEGYYFCQAQREDFFQRAK-------PYEGHPTI------------ARMQK 79 (296)
T ss_pred HHHHHHHHHHHHHHHCCCcEEE---cccccCCCCCccccccchhhhcc-------cCCCChHH------------HHHHH
Confidence 5899999999999999999999 999999998321 1111111 11112445 99999
Q ss_pred HHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeec
Q psy12521 78 LCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICY 157 (313)
Q Consensus 78 lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~ 157 (313)
+|++++++|++|+.++.+ +++||++++|+|+|+++++|+|+||+..+.+.|..+|.+|+..+.+|+++++|+|++|||
T Consensus 80 ~a~~~~i~i~~g~~~~~~--~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~~~~~~~~~rig~~IC~ 157 (296)
T PLN02747 80 LAKELGVVIPVSFFEEAN--NAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVAICW 157 (296)
T ss_pred HHHHcCeEEEeeeeecCC--CceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCCeeEEcCCccEEEEEEc
Confidence 999999999999988766 889999999999999999999999986555678889999974479999999999999999
Q ss_pred CCccchHHHHHHhCCCcEEEEeCCCCCC------CChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCC
Q psy12521 158 GRHHPLNWLMFGLNGAEIVFNPSATITG------LSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHT 231 (313)
Q Consensus 158 D~~~pe~~r~~~~~Gadlil~ps~~~~~------~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~ 231 (313)
|.+||++++.++++|||+|++|++|+.. ....+|..+.++||+||++||+.+|++|.+..+.. +|.
T Consensus 158 D~~fpe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~----~g~---- 229 (296)
T PLN02747 158 DQWFPEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEILETE----HGP---- 229 (296)
T ss_pred cccchHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEecccccccccc----cCC----
Confidence 9999999999999999999999998532 13468999999999999999999999997431110 111
Q ss_pred cceeeeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhhhhhcCc
Q psy12521 232 QFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMSGP 295 (313)
Q Consensus 232 ~~~~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~~~~~~~ 295 (313)
....|.|+|+|++|+|+++++++..++++++++||++.++..|..++++.++|+++|..++...
T Consensus 230 ~~~~~~G~S~i~~p~G~vl~~~~~~~e~~~~adid~~~~~~~r~~~~~~~~~r~~~~~~~~~~~ 293 (296)
T PLN02747 230 SKITFYGGSFIAGPTGEIVAEADDKAEAVLVAEFDLDQIKSKRASWGVFRDRRPDLYKVLLTLD 293 (296)
T ss_pred cCceEeeeeEEECCCCCEeecCCCCCCcEEEEEEcHHHHHHHHHhCCchhhcChhHHHHHHhhc
Confidence 0157899999999999999998877899999999999999999999999999999998765543
No 6
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=3.4e-48 Score=346.97 Aligned_cols=236 Identities=20% Similarity=0.248 Sum_probs=199.6
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
.|++++.+++++| +|||||| |||++++||.... ..+ ....++.. +.|+++|++
T Consensus 20 ~Nl~~~~~~i~~a--~gadLiv---fPE~~~~Gy~~~~---~~~-------~~~~~~~~------------~~l~~~A~~ 72 (256)
T PRK10438 20 ANLRHFDRQLEGI--TGRDVIV---LPEMFTTGFAMEA---AAS-------SLPQDDVV------------AWMTAKAQQ 72 (256)
T ss_pred HHHHHHHHHHHhc--cCCCEEE---eCCcccCCCcccc---hhh-------ccccchHH------------HHHHHHHHH
Confidence 4889999999986 7999999 9999999983211 111 11123456 999999999
Q ss_pred cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCcc
Q psy12521 82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHH 161 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~~ 161 (313)
+++.|++++.++.+ +++|||+++|+|+|. ++.|+|+||+++ +.|..+|.+|+. +.+|+++++|||++||||++|
T Consensus 73 ~~~~i~g~~~~~~~--~~~~Nsa~vi~~~G~-~~~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~iG~~ICyD~~f 146 (256)
T PRK10438 73 TNALIAGSVALQTE--SGAVNRFLLVEPGGT-VHFYDKRHLFRM--ADEHLHYKAGNA-RVIVEWRGWRILPLVCYDLRF 146 (256)
T ss_pred cCeEEEEEEEEecC--CCeEEEEEEEcCCCC-EEEEeeeecCCC--CCccceecCCCC-ceEEEECCEEEEEEEEeecCC
Confidence 99755433434444 678999999999997 689999999864 378899999995 899999999999999999999
Q ss_pred chHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeeeeeE
Q psy12521 162 PLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSY 241 (313)
Q Consensus 162 pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G~S~ 241 (313)
||++|.+ +|+|++++|++|+.. ...+|+.++++||+||++||++||++|.+. ++ ..|+|+|+
T Consensus 147 Pe~~r~l--~gad~i~~~s~~~~~-~~~~~~~~~~aRA~En~~~vv~~n~~G~~~--------~~-------~~~~G~S~ 208 (256)
T PRK10438 147 PVWSRNR--NDYDLALYVANWPAP-RSLHWQTLLTARAIENQAYVAGCNRVGSDG--------NG-------HHYRGDSR 208 (256)
T ss_pred HHHHHhh--cCCCEEEEecCCCCC-chHHHHHHHHHHHHhcCcEEEEecccccCC--------CC-------CEEcCceE
Confidence 9999986 799999999999875 456899999999999999999999999753 12 46899999
Q ss_pred EECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhh
Q psy12521 242 ITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVY 288 (313)
Q Consensus 242 iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y 288 (313)
|+||+|+++++++.++++++++++|++.+++.|..+|++++|++..|
T Consensus 209 ivdP~G~vl~~~~~~~e~~i~~~idl~~~~~~R~~~~~l~~r~~~~~ 255 (256)
T PRK10438 209 IINPQGEIIATAEPHQATRIDAELSLEALQEYREKFPAWRDADEFTL 255 (256)
T ss_pred EECCCCcEEEEcCCCCcEEEEEEECHHHHHHHHHhCCccccCChhhc
Confidence 99999999999887789999999999999999999999999977554
No 7
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=1.7e-48 Score=356.13 Aligned_cols=267 Identities=22% Similarity=0.279 Sum_probs=213.2
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccc--------cccccccCccccCCCCCcccccCCCccchHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHT--------EFGHFYGSSYITAPNGTRTPVSRNSSIVTFDY 73 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (313)
.|++++++++++|+++|+|||| |||++++||....+. .+..++... .. .+++.+ +
T Consensus 17 ~nl~~~~~~i~~A~~~ga~lvv---fPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~------------~ 79 (297)
T cd07564 17 ATVEKACRLIEEAAANGAQLVV---FPEAFIPGYPYWIWFGAPAEGRELFARYYENS-VE-VDGPEL------------E 79 (297)
T ss_pred HHHHHHHHHHHHHHHCCCCEEE---eccccccCCCchhhcCCcccchHHHHHHHHhC-cC-CCCHHH------------H
Confidence 5899999999999999999999 999999998321110 000000000 01 134555 9
Q ss_pred HHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCC-CCCeEEeCCceEE
Q psy12521 74 FFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNT-GHPVFETEFGRIA 152 (313)
Q Consensus 74 ~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~-~~~v~~~~~~rig 152 (313)
.|+++|++++++|++|+.++.+ +++||++++|+|+|+++++|+|+||+. .|..+|.+|+. .+.+|+++++|||
T Consensus 80 ~l~~~a~~~~i~iv~G~~~~~~--~~~yNs~~vi~~~G~i~~~y~K~~l~~----~E~~~~~~g~~~~~~v~~~~~~kig 153 (297)
T cd07564 80 RLAEAARENGIYVVLGVSERDG--GTLYNTQLLIDPDGELLGKHRKLKPTH----AERLVWGQGDGSGLRVVDTPIGRLG 153 (297)
T ss_pred HHHHHHHHcCcEEEEeeEeccC--CceEEEEEEEcCCCCEeeeeeccCCCc----hhhhhcccCCCCCceEEecCCceEE
Confidence 9999999999999999988765 789999999999999999999999864 78889999873 3689999999999
Q ss_pred EEeecCCccchHHHHHHhCCCcEEEEeCCC--CCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCC
Q psy12521 153 INICYGRHHPLNWLMFGLNGAEIVFNPSAT--ITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAH 230 (313)
Q Consensus 153 ~~IC~D~~~pe~~r~~~~~Gadlil~ps~~--~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~ 230 (313)
++||||++|||++|.++++|||++++|++. +......+|..++++||+||++||++||++|.+..........+ ...
T Consensus 154 ~~ICyD~~fPe~~r~~a~~ga~ii~~~~~~~~~~~~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~-~~~ 232 (297)
T cd07564 154 ALICWENYMPLARYALYAQGEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDE-EAD 232 (297)
T ss_pred EEEEhhcCCHHHHHHHHHCCCeEEEECCCCcccccccHHHHHHHHHHHHHhcCCEEEEcccccChhHccccccccc-ccc
Confidence 999999999999999999999999997663 33335679999999999999999999999997531110000000 000
Q ss_pred CcceeeeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccc-cchhhhhhhh
Q psy12521 231 TQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQAS-IRELVYIQSM 292 (313)
Q Consensus 231 ~~~~~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~-~r~~~y~~~~ 292 (313)
.+...+.|.|+|+||+|+++++++.++++++++++|++.++.+|..+|++++ +||++|...+
T Consensus 233 ~~~~~~~G~S~iv~P~G~il~~~~~~~e~~l~a~id~~~~~~~r~~~~~~~~~~r~~~~~~~~ 295 (297)
T cd07564 233 PLEVLGGGGSAIVGPDGEVLAGPLPDEEGILYADIDLDDIVEAKLDFDPVGHYSRPDVFSLTV 295 (297)
T ss_pred cccccCCCceEEECCCCCeecCCCCCCceEEEEEecHHHHHHHHhcCCCCCCCCCchhhceee
Confidence 0114688999999999999999877889999999999999999999999998 6999996543
No 8
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.9e-48 Score=346.91 Aligned_cols=245 Identities=29% Similarity=0.461 Sum_probs=209.9
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
.|++++.+++++|+++|+|||| |||++++||...+..+..++.. ...+++.+ +.++++|++
T Consensus 16 ~n~~~~~~~i~~a~~~g~dlvv---fPE~~l~g~~~~~~~~~~~~~~----~~~~~~~~------------~~~~~~a~~ 76 (268)
T cd07580 16 ANLARSIELIREAADAGANLVV---LPELANTGYVFESRDEAFALAE----EVPDGAST------------RAWAELAAE 76 (268)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---cCCcccccCCCCCHHHHHHhhc----cCCCCchH------------HHHHHHHHH
Confidence 5889999999999999999999 9999999984322211111000 11245667 999999999
Q ss_pred cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCcc
Q psy12521 82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHH 161 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~~ 161 (313)
++++|++|+.++.+ +++|||+++|+++|. +++|+|+||++ .|..+|.+|+..+.+|+++++|+|++||||++|
T Consensus 77 ~~~~i~~G~~~~~~--~~~yNs~~vi~~~g~-~~~y~K~~l~~----~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D~~f 149 (268)
T cd07580 77 LGLYIVAGFAERDG--DRLYNSAVLVGPDGV-IGTYRKAHLWN----EEKLLFEPGDLGLPVFDTPFGRIGVAICYDGWF 149 (268)
T ss_pred cCcEEEeecccccC--CceEEEEEEECCCCc-EEEEEEecCCc----hhcceecCCCCCCceEEcCCCcEEEEEECcccc
Confidence 99999999988766 789999999999995 89999999987 688999999955899999999999999999999
Q ss_pred chHHHHHHhCCCcEEEEeCCCCCCCCh-----hhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceee
Q psy12521 162 PLNWLMFGLNGAEIVFNPSATITGLSE-----PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHF 236 (313)
Q Consensus 162 pe~~r~~~~~Gadlil~ps~~~~~~~~-----~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~ 236 (313)
|++++.++++|||+|++|++|+..... .+|..+.++||+||++||++||++|.+. + ..+
T Consensus 150 pe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~~---------~-------~~~ 213 (268)
T cd07580 150 PETFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTER---------G-------QPF 213 (268)
T ss_pred hHHHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeecc---------C-------ceE
Confidence 999999999999999999999764322 4688888999999999999999999763 2 468
Q ss_pred eeeeEEECCCCceeccCCCC-CccEEEEEeehhhHHHHHHh--cCcccccchhhh
Q psy12521 237 YGSSYITAPNGTRTPGLSRV-RDGLLVAELDLNLNRQVKDV--WGFQASIRELVY 288 (313)
Q Consensus 237 ~G~S~iv~p~G~vla~~~~~-~e~vl~a~id~~~~~~~r~~--~~~~~~~r~~~y 288 (313)
.|+|+|++|+|+++++++.. +++++++++|++.++.+|.. +|+++++|+++|
T Consensus 214 ~G~S~ii~p~G~~~~~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~r~~~y 268 (268)
T cd07580 214 IGQSLIVGPDGWPLAGPASGDEEEILLADIDLTAARRKRIWNSNDVLRDRRPDLY 268 (268)
T ss_pred eeeeEEECCCCCeeeecCCCCCCeEEEEEecHHHHHHhhcCCcchhhhhcCcccC
Confidence 89999999999999997643 89999999999999999988 589999999887
No 9
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.6e-48 Score=349.99 Aligned_cols=232 Identities=20% Similarity=0.284 Sum_probs=197.3
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
+|++++++++++|+++|||||| |||++++|+... ...++ . .+++.+ +.|+++|++
T Consensus 15 ~Nl~~~~~~i~~A~~~gadlvv---fPE~~ltG~~~~--~~~~~-------~-~~~~~~------------~~l~~lA~~ 69 (279)
T cd07579 15 GNLATIDRLAAEAKATGAELVV---FPELALTGLDDP--ASEAE-------S-DTGPAV------------SALRRLARR 69 (279)
T ss_pred HHHHHHHHHHHHHHHCCCCEEE---eCCccccCCCCh--HHhcc-------c-CCCHHH------------HHHHHHHHH
Confidence 6899999999999999999999 999999998321 11222 2 235566 999999999
Q ss_pred cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCcc
Q psy12521 82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHH 161 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~~ 161 (313)
++++|++|+.++.+ +++|||+++|+++| ++++|+|+||++ .|+.+|.+|+. +.+|+++++|+|++||||++|
T Consensus 70 ~~i~iv~G~~~~~~--~~~yNs~~vi~~~G-~i~~Y~K~hL~~----~E~~~f~~G~~-~~v~~~~~~kiG~~ICyD~~f 141 (279)
T cd07579 70 LRLYLVAGFAEADG--DGLYNSAVLVGPEG-LVGTYRKTHLIE----PERSWATPGDT-WPVYDLPLGRVGLLIGHDALF 141 (279)
T ss_pred cCeEEEEeceEccC--CcEEEEEEEEeCCe-eEEEEecccCCC----cchhhccCCCC-CeeEEcCceeEEEEEeccccC
Confidence 99999999988776 78999999999999 679999999986 68899999996 899999999999999999999
Q ss_pred chHHHHHHhCCCcEEEEeCCCCC-----------------CCC--hhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCc
Q psy12521 162 PLNWLMFGLNGAEIVFNPSATIT-----------------GLS--EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFT 222 (313)
Q Consensus 162 pe~~r~~~~~Gadlil~ps~~~~-----------------~~~--~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~ 222 (313)
||++|.++++|||+|++|++|+. ..+ ..+|+ ++++||+||++||++||++|...
T Consensus 142 Pe~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~~g~~~------ 214 (279)
T cd07579 142 PEAGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANVPDPAR------ 214 (279)
T ss_pred cHHHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeeccCCcc------
Confidence 99999999999999999999753 111 15787 58999999999999999998642
Q ss_pred CCCCCCCCCcceeeeeeeEEECCCCceecc----CCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhh
Q psy12521 223 SGDGKPAHTQFGHFYGSSYITAPNGTRTPG----LSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYI 289 (313)
Q Consensus 223 ~~~g~~~~~~~~~~~G~S~iv~p~G~vla~----~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~ 289 (313)
.+.|.|+|+||+|.++.. +. .+|++++++||++.+++ .++++.+||+++|+
T Consensus 215 ------------~~~G~S~ii~P~G~v~~~~~~~~~-~~e~~l~a~id~~~~~~---~~~~~~~rr~~~~~ 269 (279)
T cd07579 215 ------------GYTGWSGVFGPDTFAFPRQEAAIG-DEEGIAWALIDTSNLDS---RYPTNVVRRKDLVR 269 (279)
T ss_pred ------------ccccccEEECCCeEEcchhhcccC-CCCcEEEEEecchhhcc---cCCchhhhhHHHHH
Confidence 367999999999999843 43 56889999999998876 46777777777774
No 10
>PLN02504 nitrilase
Probab=100.00 E-value=1.1e-47 Score=356.38 Aligned_cols=269 Identities=23% Similarity=0.307 Sum_probs=214.8
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCcccc-------------ccccccCccccCCCCCcccccCCCcc
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTE-------------FGHFYGSSYITAPNGTRTPVSRNSSI 68 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (313)
.|++++.++|++|+++|||||| |||+|++||....... ++.+...+ .. .+++.+
T Consensus 41 ~nl~~~~~li~eAa~~gadLIV---fPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~-~~g~~i-------- 107 (346)
T PLN02504 41 ATLDKAERLIAEAAAYGSQLVV---FPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASA-ID-VPGPEV-------- 107 (346)
T ss_pred HHHHHHHHHHHHHHHCCCeEEE---eCccccccCCcchhhccccccccchhHHHHHHHHHhc-cc-CCCHHH--------
Confidence 5899999999999999999999 9999999983211110 00100000 01 245556
Q ss_pred chHHHHHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCC-CCCeEEeC
Q psy12521 69 VTFDYFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNT-GHPVFETE 147 (313)
Q Consensus 69 ~~~~~~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~-~~~v~~~~ 147 (313)
+.|+++|++++++|++|+.++.+ +++||++++|+|+|+++++|+|+|+.+ .|+.+|.+|+. .+.+|+++
T Consensus 108 ----~~l~~~A~~~~i~iv~G~~e~~~--~~~yNsa~~i~~~G~i~~~yrK~~p~~----~E~~~f~~G~g~~~~vf~~~ 177 (346)
T PLN02504 108 ----DRLAAMAGKYKVYLVMGVIERDG--YTLYCTVLFFDPQGQYLGKHRKLMPTA----LERLIWGFGDGSTIPVYDTP 177 (346)
T ss_pred ----HHHHHHHHHcCCEEEEeeeecCC--CceEEEEEEECCCCCEEeEEeeccCCc----ccceeeecCCCCCCceEEcC
Confidence 99999999999999999988766 789999999999999999999999865 69999998863 37899999
Q ss_pred CceEEEEeecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCC--C
Q psy12521 148 FGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSG--D 225 (313)
Q Consensus 148 ~~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~--~ 225 (313)
++|||++||||.+|||++|.++++||||+++|++|+ ..+|+.++++||+||++||+.||++|....-...... .
T Consensus 178 ~griG~lICyD~~fPe~~r~la~~Gadii~~p~~~~----~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~ 253 (346)
T PLN02504 178 IGKIGAVICWENRMPLLRTAMYAKGIEIYCAPTADS----RETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFS 253 (346)
T ss_pred CceEEEEEeccchhHHHHHHHHHCCCeEEEECCCCC----chhHHHHHHHHHHccCcEEEEecccccccccCcccccccc
Confidence 999999999999999999999999999999999884 3689999999999999999999999742210000000 0
Q ss_pred CCC--CCCcceeeeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCccccc-chhhhhhhhcCccc
Q psy12521 226 GKP--AHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASI-RELVYIQSMSGPTA 297 (313)
Q Consensus 226 g~~--~~~~~~~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~-r~~~y~~~~~~~~~ 297 (313)
|.. ...+.+.|.|+|+|+||+|+++++....+|++++++||++.++..|..++++.++ ||++|..++.+...
T Consensus 254 G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~~e~il~adiDl~~i~~~R~~~~~~~~~~r~d~~~l~~~~~~~ 328 (346)
T PLN02504 254 GTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEGEGLITADLDLGEIARAKFDFDVVGHYSRPDVLSLTVNEHPL 328 (346)
T ss_pred cccccccccccccCcceEEECCCCCEecCCCCCCCcEEEEEEcHHHHHHHHhhCCccccCCCCcceEEEEcCCCC
Confidence 000 0001146889999999999999988756799999999999999999999999776 99999887766433
No 11
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=3.6e-47 Score=345.28 Aligned_cols=260 Identities=30% Similarity=0.475 Sum_probs=217.4
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
+|++++.+++++|+++|+|||| |||++++||...... .+.+... ....+++.+ +.|+++|++
T Consensus 16 ~n~~~~~~~i~~A~~~gadliv---fPE~~l~g~~~~~~~--~~~~~~~-~~~~~~~~~------------~~l~~la~~ 77 (284)
T cd07573 16 ANLAKAEELVREAAAQGAQIVC---LQELFETPYFCQEED--EDYFDLA-EPPIPGPTT------------ARFQALAKE 77 (284)
T ss_pred HHHHHHHHHHHHHHHCCCcEEE---ccccccCCCCccccc--chhHHhc-cccCCCHHH------------HHHHHHHHH
Confidence 5889999999999999999999 999999998321110 0000000 000123344 999999999
Q ss_pred cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCcc
Q psy12521 82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHH 161 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~~ 161 (313)
++++|++|+.++.. ++++||++++|+|+|+++++|+|+||+..+.+.|..+|.+|+..+.+|+++++|+|++||||++|
T Consensus 78 ~~i~iv~g~~~~~~-~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~f 156 (284)
T cd07573 78 LGVVIPVSLFEKRG-NGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWDQWF 156 (284)
T ss_pred CCEEEEecceeeCC-CCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCCceEecCCceEEEEEeccccc
Confidence 99999999988764 26899999999999999999999999865556788999999844899999999999999999999
Q ss_pred chHHHHHHhCCCcEEEEeCCCCCC--------CChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcc
Q psy12521 162 PLNWLMFGLNGAEIVFNPSATITG--------LSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQF 233 (313)
Q Consensus 162 pe~~r~~~~~Gadlil~ps~~~~~--------~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~ 233 (313)
|+++|.++++|||+|++|++|++. ....+|..+.++||+||++|+++||++|....+. ++
T Consensus 157 pe~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~-----~~------- 224 (284)
T cd07573 157 PEAARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPG-----SG------- 224 (284)
T ss_pred hHHHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccCCCC-----CC-------
Confidence 999999999999999999998542 1336788889999999999999999999754210 11
Q ss_pred eeeeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhhhhh
Q psy12521 234 GHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSM 292 (313)
Q Consensus 234 ~~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~~~~ 292 (313)
..|.|+|+|++|+|+++++.+.+++++++++||++.++..|..++++.+||+++|+.+.
T Consensus 225 ~~~~G~S~i~~p~G~i~~~~~~~~~~v~~a~id~~~~~~~r~~~~~~~~~~~~~~~~~~ 283 (284)
T cd07573 225 ITFYGSSFIADPFGEILAQASRDEEEILVAEFDLDEIEEVRRAWPFFRDRRPDLYGALT 283 (284)
T ss_pred ceeeceeEEECCCCCeeeccCCCCCcEEEEEecHHHHHHHHhhChhhhhcChhhhhhhh
Confidence 57899999999999999999878899999999999999999999999999999998653
No 12
>KOG0807|consensus
Probab=100.00 E-value=1.1e-48 Score=329.49 Aligned_cols=251 Identities=23% Similarity=0.305 Sum_probs=217.4
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCccc-CCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFT-SGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCI 80 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 80 (313)
+|++.+.++|.+|+++||++|. |||.|. -|.....-.++++ . .+++.+ +..+++|+
T Consensus 31 kNl~~~keLi~eA~~k~A~~if---lPE~~dFi~~n~~esi~Lae-------~-l~~k~m------------~~y~elar 87 (295)
T KOG0807|consen 31 KNLATCKELISEAAQKGAKLIF---LPEAFDFIGQNPLESIELAE-------P-LDGKFM------------EQYRELAR 87 (295)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---cchhhhhhcCCcccceeccc-------c-cChHHH------------HHHHHHHH
Confidence 5889999999999999999999 999863 1221222334454 2 256666 99999999
Q ss_pred HcCcEEEeece-eecC-CCCeEEEEEEEEcCCCcEeeeEeecCCCCC-----CCCCcccceeCCCCCCCeEEeCCceEEE
Q psy12521 81 KYNMVIVSPIL-ERDD-VTDIIWNTAVVINNHGRVMGKHRKNHIPRV-----GDFNESTYYFEGNTGHPVFETEFGRIAI 153 (313)
Q Consensus 81 ~~~i~iv~G~~-~~~~-~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~-----~~~~E~~~~~~G~~~~~v~~~~~~rig~ 153 (313)
+++|++.+|.. ++.+ +..+++|+.++|+.+|+++..|+|.||++. +.+.|+..-.||......+++|.||+|+
T Consensus 88 ~~nIwlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGl 167 (295)
T KOG0807|consen 88 SHNIWLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGL 167 (295)
T ss_pred hcCeeEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccce
Confidence 99999987755 4432 236899999999999999999999999865 3568888889999877889999999999
Q ss_pred EeecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcc
Q psy12521 154 NICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQF 233 (313)
Q Consensus 154 ~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~ 233 (313)
.||||++|||++..+.++||+++..|++++..++..+|+.++|+||+|++||||+++++|.... .
T Consensus 168 aICYDiRFpE~sl~LR~~gA~iLtyPSAFT~~TG~AHWEiLlRARAietQCYVvaaaQ~G~Hne--------K------- 232 (295)
T KOG0807|consen 168 AICYDIRFPELSLKLRKMGAQILTYPSAFTIKTGEAHWEILLRARAIETQCYVVAAAQVGKHNE--------K------- 232 (295)
T ss_pred eeeeeccCchHHHHHHHcCCcEEeccchhhhcccHHHHHHHHHHHHhhcceEEEehhhcccccc--------h-------
Confidence 9999999999999999999999999999999889999999999999999999999999998751 1
Q ss_pred eeeeeeeEEECCCCceeccCCCCC-ccEEEEEeehhhHHHHHHhcCcccccchhhhhh
Q psy12521 234 GHFYGSSYITAPNGTRTPGLSRVR-DGLLVAELDLNLNRQVKDVWGFQASIRELVYIQ 290 (313)
Q Consensus 234 ~~~~G~S~iv~p~G~vla~~~~~~-e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~~ 290 (313)
...+|+||||||+|.|+++++... .++++||||++.++.+|..+|.+..||+|+|..
T Consensus 233 R~SyGhSMiVDPWGtVva~~se~~~~~l~~AdiDlslld~lr~~mP~~~hRr~dly~~ 290 (295)
T KOG0807|consen 233 RESYGHSMIVDPWGTVVARCSERTGPGLILADIDLSLLDSLRTKMPLFNHRRNDLYTL 290 (295)
T ss_pred hhccCcceEEcchhhhheecCCCCCCceEEEEccHHHHHHHHHhCchhhhcccchhhh
Confidence 468899999999999999998543 899999999999999999999999999999964
No 13
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=2.7e-47 Score=349.07 Aligned_cols=255 Identities=24% Similarity=0.319 Sum_probs=213.1
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccc----cccccccCccccCCCCCcccccCCCccchHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHT----EFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQ 77 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (313)
.|++++.+++++|+++|||||| |||++++||...... ....++. ...+++.+ +.|++
T Consensus 22 ~n~~~i~~~i~~A~~~gadliv---fPE~~l~g~~~~~~~~~~~~~~~~~~----~~~~~~~~------------~~l~~ 82 (302)
T cd07569 22 SVVARLIALLEEAASRGAQLVV---FPELALTTFFPRWYFPDEAELDSFFE----TEMPNPET------------QPLFD 82 (302)
T ss_pred HHHHHHHHHHHHHHhCCCcEEE---cccccccCcccccccCChHHhhhhhh----hcCCChhH------------HHHHH
Confidence 4789999999999999999999 999999997321110 1111111 11245667 99999
Q ss_pred HHHHcCcEEEeeceeecCCCC---eEEEEEEEEcCCCcEeeeEeecCCCCCCCC--------CcccceeCCCCCCCeEEe
Q psy12521 78 LCIKYNMVIVSPILERDDVTD---IIWNTAVVINNHGRVMGKHRKNHIPRVGDF--------NESTYYFEGNTGHPVFET 146 (313)
Q Consensus 78 lA~~~~i~iv~G~~~~~~~~~---~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~--------~E~~~~~~G~~~~~v~~~ 146 (313)
+|++++++|++|++++..+ + ++||++++|+|+|+++++|+|+||++++++ .|+.+|.+|+..+.+|++
T Consensus 83 ~a~~~~i~iv~G~~~~~~~-~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v~~~ 161 (302)
T cd07569 83 RAKELGIGFYLGYAELTED-GGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVFRV 161 (302)
T ss_pred HHHHhCeEEEEeceeecCC-CCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCceEec
Confidence 9999999999999876442 3 899999999999999999999999886532 478889999933899999
Q ss_pred CCceEEEEeecCCccchHHHHHHhCCCcEEEEeCCCCCCC---------ChhhHHHHHHHHHHhhCcEEEEEccccCCCC
Q psy12521 147 EFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGL---------SEPLWGIEARNAAIANGYFTCAINRVGSETF 217 (313)
Q Consensus 147 ~~~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~---------~~~~~~~~~~~rA~en~~~vv~an~~G~~~~ 217 (313)
+++|||++||||++|||++|.++.+|||+|++|++++... ...+|...+++||+||++||+++|++|.+.
T Consensus 162 ~~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~~- 240 (302)
T cd07569 162 PGGIMGMCICNDRRWPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAKAGMED- 240 (302)
T ss_pred CCceEEEEEeeccccchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEeeccccCC-
Confidence 9999999999999999999999999999999987753311 123677778999999999999999999753
Q ss_pred CCCCcCCCCCCCCCcceeeeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHh-cCcccccchhhhhhhh
Q psy12521 218 PNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDV-WGFQASIRELVYIQSM 292 (313)
Q Consensus 218 ~~~~~~~~g~~~~~~~~~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~-~~~~~~~r~~~y~~~~ 292 (313)
+ ..+.|+|+|++|+|+++++++.+++++++++||++.++..|.. ++++.+||+++|..++
T Consensus 241 --------~-------~~~~G~S~ii~p~G~vla~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~r~~~y~~~~ 301 (302)
T cd07569 241 --------G-------CDLIGGSCIVAPTGEIVAQATTLEDEVIVADCDLDLCREGRETVFNFARHRRPEHYGLIA 301 (302)
T ss_pred --------C-------ceEecceEEECCCCCEEEecCCCCCcEEEEEecHHHhhhcccccCcchhhcCHHHHhhhh
Confidence 2 4789999999999999999987789999999999999999995 8999999999998764
No 14
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=2.8e-47 Score=340.45 Aligned_cols=238 Identities=24% Similarity=0.329 Sum_probs=208.0
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCcc-ccccccccCccccCCCCCcccccCCCccchHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAH-TEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCI 80 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 80 (313)
.|++++.+++++|+++|+|||| |||++++||..... ...++ . ..++.+ +.|+++|+
T Consensus 16 ~n~~~i~~~i~~a~~~ga~lvv---~PE~~l~g~~~~~~~~~~~~-------~-~~~~~~------------~~l~~~a~ 72 (254)
T cd07576 16 ANLARLDEAAARAAAAGADLLV---FPELFLTGYNIGDAVARLAE-------P-ADGPAL------------QALRAIAR 72 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---ccCccccCCCCcchhhhhhc-------c-cCChHH------------HHHHHHHH
Confidence 5899999999999999999999 99999999843211 11111 1 134455 99999999
Q ss_pred HcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCc
Q psy12521 81 KYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRH 160 (313)
Q Consensus 81 ~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~ 160 (313)
+++++|++|++++.+ +++|||+++|+|+|+++++|+|+||++ ..|..+|.+|+. +.+|+++++|+|++||||++
T Consensus 73 ~~~~~ii~G~~~~~~--~~~yNs~~~i~~~G~i~~~y~K~~l~~---~~E~~~~~~G~~-~~v~~~~~~kig~~IC~D~~ 146 (254)
T cd07576 73 RHGIAIVVGYPERAG--GAVYNAAVLIDEDGTVLANYRKTHLFG---DSERAAFTPGDR-FPVVELRGLRVGLLICYDVE 146 (254)
T ss_pred HcCCEEEEeccccCC--CceEEEEEEECCCCCEeeEEEeeccCC---cchhhhccCCCC-ceEEEECCeEEEEEEeecCC
Confidence 999999999988876 889999999999999999999999986 268889999996 89999999999999999999
Q ss_pred cchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeeeee
Q psy12521 161 HPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSS 240 (313)
Q Consensus 161 ~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G~S 240 (313)
||++++.++++|||+|++|++++...+ .+|..++++||+||++|+++||++|... + ..|.|+|
T Consensus 147 fpe~~~~~~~~gadii~~p~~~~~~~~-~~~~~~~~~rA~en~~~vv~an~~G~~~---------~-------~~~~G~S 209 (254)
T cd07576 147 FPELVRALALAGADLVLVPTALMEPYG-FVARTLVPARAFENQIFVAYANRCGAED---------G-------LTYVGLS 209 (254)
T ss_pred CCHHHHHHHHCCCCEEEECCccCCCcc-hhhhhhhHHHHHhCCCEEEEEcccCCCC---------C-------ceeeeee
Confidence 999999999999999999998865433 5678888999999999999999999764 1 4689999
Q ss_pred EEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchh
Q psy12521 241 YITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIREL 286 (313)
Q Consensus 241 ~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~ 286 (313)
+|+||+|+++++++.+ ++++++++|++.++..|..+|++++||++
T Consensus 210 ~i~~p~G~il~~~~~~-e~~~~~~id~~~~~~~R~~~~~~~~~~~~ 254 (254)
T cd07576 210 SIAGPDGTVLARAGRG-EALLVADLDPAALAAARRENPYLADRRPE 254 (254)
T ss_pred EEECCCCCEeEecCCC-CeEEEEEcCHHHHHhhhhcCchhhhcCCC
Confidence 9999999999998866 89999999999999999999999998874
No 15
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=5.9e-47 Score=344.61 Aligned_cols=240 Identities=24% Similarity=0.314 Sum_probs=203.7
Q ss_pred cccccHHHHHHhHHh--cCCcEEEccCCCCcccCCCCCC--ccccccccccCccccCCCCCcccccCCCccchHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFT--CAINRVGSETFPNQFTSGDGKP--AHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQ 77 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~--~gadlvv~~~fPE~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (313)
+|++++.+++++|++ +|||||| |||++++||... ...++++ . .+++.+ +.|++
T Consensus 21 ~Nl~~~~~~i~~A~~~~~gadLvv---fPE~~ltGy~~~~~~~~~~a~-------~-~~~~~~------------~~l~~ 77 (291)
T cd07565 21 ENAERIADMVEGTKRGLPGMDLIV---FPEYSTQGLMYDKWTMDETAC-------T-VPGPET------------DIFAE 77 (291)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEE---eCCcccccCCCCcchhhhhcc-------C-CCChhH------------HHHHH
Confidence 589999999999987 5999999 999999998321 1222332 2 256777 99999
Q ss_pred HHHHcCcEEEeeceeecCCC-CeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeC-CceEEEEe
Q psy12521 78 LCIKYNMVIVSPILERDDVT-DIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETE-FGRIAINI 155 (313)
Q Consensus 78 lA~~~~i~iv~G~~~~~~~~-~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~-~~rig~~I 155 (313)
+|+++++++++|+.++.+.. +++|||+++|+|+|+++++|||+||+. +...|.+|+..+.+|++. ++|||++|
T Consensus 78 lA~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~~~v~~~~~g~riG~~I 152 (291)
T cd07565 78 ACKEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLGTPVCEGPKGSKIALII 152 (291)
T ss_pred HHHHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCCceeeECCCCCEEEEEE
Confidence 99999999999988876421 579999999999999999999999853 234578998547899986 56999999
Q ss_pred ecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCccee
Q psy12521 156 CYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGH 235 (313)
Q Consensus 156 C~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~ 235 (313)
|||++|||++|.++++|||+|++|++|+.. ...+|..++++||+||++||++||++|.++ + ..
T Consensus 153 CyD~~fPe~~r~la~~GAdill~ps~~~~~-~~~~w~~~~~aRA~En~~~vv~aN~~G~~~---------~-------~~ 215 (291)
T cd07565 153 CHDGMYPEIARECAYKGAELIIRIQGYMYP-AKDQWIITNKANAWCNLMYTASVNLAGFDG---------V-------FS 215 (291)
T ss_pred EcCCCCcHHHHHHHHCCCeEEEECCcCCCC-cchHHHHHHHHHHHhcCcEEEEecccccCC---------C-------ce
Confidence 999999999999999999999999999765 356899999999999999999999999753 2 46
Q ss_pred eeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhhh
Q psy12521 236 FYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQ 290 (313)
Q Consensus 236 ~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~~ 290 (313)
++|+|+|+||+|+++++++..++++++++||++.++..|..+++.+ ++|+.
T Consensus 216 ~~G~S~ivdP~G~ila~~~~~~e~i~~adid~~~~~~~R~~~~~~~----~~~~~ 266 (291)
T cd07565 216 YFGESMIVNFDGRTLGEGGREPDEIVTAELSPSLVRDARKNWGSEN----NLYKL 266 (291)
T ss_pred eeeeeEEECCCCCEEEeCCCCCCcEEEEEEcHHHHHHHHhcCCCCC----cHHHh
Confidence 8899999999999999998777899999999999999999998843 66654
No 16
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.1e-47 Score=337.85 Aligned_cols=237 Identities=26% Similarity=0.394 Sum_probs=207.9
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
.|++++.+++++|+++|+|||| |||++++|+........++ . ..++.+ +.|+++|++
T Consensus 16 ~n~~~i~~~i~~A~~~g~dlvv---~PE~~l~g~~~~~~~~~~~-------~-~~~~~~------------~~l~~~a~~ 72 (253)
T cd07583 16 ANIERVESLIEEAAAAGADLIV---LPEMWNTGYFLDDLYELAD-------E-DGGETV------------SFLSELAKK 72 (253)
T ss_pred HHHHHHHHHHHHHHHCCCCEEE---cCCccCCCCChhhHHhhhc-------c-cCchHH------------HHHHHHHHH
Confidence 5889999999999999999999 9999999983322111111 1 235566 999999999
Q ss_pred cCcEEEeeceee-cCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCc
Q psy12521 82 YNMVIVSPILER-DDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRH 160 (313)
Q Consensus 82 ~~i~iv~G~~~~-~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~ 160 (313)
++++|++|+.+. .+ +++|||+++|+|+|+++++|+|+||+++ +.|..+|.+|+. +.+|+++++|+|++||||++
T Consensus 73 ~~~~iv~G~~~~~~~--~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~-~~v~~~~~~rig~~IC~D~~ 147 (253)
T cd07583 73 HGVNIVAGSVAEKEG--GKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDE-LEVFELDGGKVGLFICYDLR 147 (253)
T ss_pred cCcEEEeceEEecCC--CcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCC-ceEEEeCCeEEEEEEEeccc
Confidence 999999997644 44 7899999999999999999999999985 368889999995 89999999999999999999
Q ss_pred cchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeeeee
Q psy12521 161 HPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSS 240 (313)
Q Consensus 161 ~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G~S 240 (313)
|||++|.++++|||+|++|++|+.. ...+|..++++||+||++|+++||++|.+. + ..|.|.|
T Consensus 148 ~pe~~r~~~~~ga~ll~~ps~~~~~-~~~~~~~~~~~rA~en~~~vv~~n~~G~~~---------~-------~~~~G~S 210 (253)
T cd07583 148 FPELFRKLALEGAEILFVPAEWPAA-RIEHWRTLLRARAIENQAFVVACNRVGTDG---------G-------NEFGGHS 210 (253)
T ss_pred cHHHHHHHHHcCCcEEEECCCCCCC-chHHHHHHHHHHHHHhCCEEEEEcCcccCC---------C-------ceeccee
Confidence 9999999999999999999998765 467899889999999999999999999864 1 4688999
Q ss_pred EEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccc
Q psy12521 241 YITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIR 284 (313)
Q Consensus 241 ~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r 284 (313)
+|++|+|+++++++. +++++++++|++.++++|..+++++|||
T Consensus 211 ~ii~p~G~il~~~~~-~~~~~~~~i~l~~~~~~r~~~~~~~~~~ 253 (253)
T cd07583 211 MVIDPWGEVLAEAGE-EEEILTAEIDLEEVAEVRKKIPVFKDRR 253 (253)
T ss_pred EEECCCchhheecCC-CceEEEEEecHHHHHHHHHhCCchhhcC
Confidence 999999999999885 8899999999999999999999998886
No 17
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=9.6e-47 Score=337.95 Aligned_cols=238 Identities=28% Similarity=0.457 Sum_probs=208.7
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccc----cccccccCccccCCCCCcccccCCCccchHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHT----EFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQ 77 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (313)
.|++++++++++|+++|+|||| |||++++||...... ++++ . .+++.+ +.|++
T Consensus 16 ~n~~~~~~~i~~a~~~ga~liv---~PE~~l~g~~~~~~~~~~~~~~~-------~-~~~~~~------------~~l~~ 72 (258)
T cd07584 16 ANLKKAAELCKEAAAEGADLIC---FPELATTGYRPDLLGPKLWELSE-------P-IDGPTV------------RLFSE 72 (258)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---cccccccCCCccccchhhHhhcc-------C-CCCcHH------------HHHHH
Confidence 5899999999999999999999 999999998432111 1111 1 234455 99999
Q ss_pred HHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeec
Q psy12521 78 LCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICY 157 (313)
Q Consensus 78 lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~ 157 (313)
+|++++++|++|+.++...++++||++++|+|+|++++.|+|+||++ .|..+|.+|+. +.+|+++++|+|++|||
T Consensus 73 ~a~~~~i~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~-~~~~~~~~~~~g~~IC~ 147 (258)
T cd07584 73 LAKELGVYIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQ-YPVFDTPFGKIGVMICY 147 (258)
T ss_pred HHHHcCeEEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCC-CeeEEcCCceEEEEEEc
Confidence 99999999999998775423689999999999999999999999986 68889999996 89999999999999999
Q ss_pred CCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeee
Q psy12521 158 GRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFY 237 (313)
Q Consensus 158 D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~ 237 (313)
|++||+++|.++++|+|++++|++|+.. ..+.|....++||+||++||+.+|++|.+. + ..+.
T Consensus 148 D~~fpe~~r~~~~~gadll~~ps~~~~~-~~~~~~~~~~~rA~En~~~vv~~n~~g~~~---------~-------~~~~ 210 (258)
T cd07584 148 DMGFPEVARILTLKGAEVIFCPSAWREQ-DADIWDINLPARALENTVFVAAVNRVGNEG---------D-------LVLF 210 (258)
T ss_pred CccChHHHHHHHHCCCcEEEECCccCCC-CchHHHHHHHHHHHhCCcEEEEECccccCC---------C-------ceec
Confidence 9999999999999999999999999765 456898889999999999999999998753 1 4688
Q ss_pred eeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccc
Q psy12521 238 GSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIR 284 (313)
Q Consensus 238 G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r 284 (313)
|+|+|++|+|+++++++.++++++++++|++.++..|..+|++.++|
T Consensus 211 G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~r~~~p~~~~~~ 257 (258)
T cd07584 211 GKSKILNPRGQVLAEASEEAEEILYAEIDLDAIADYRMTLPYLKDRK 257 (258)
T ss_pred ceeEEECCCCceeeecCCCCCcEEEEEeCHHHHHHHHhhCchhhhcC
Confidence 99999999999999998788999999999999999999999998876
No 18
>PLN02798 nitrilase
Probab=100.00 E-value=1.6e-46 Score=341.39 Aligned_cols=249 Identities=22% Similarity=0.344 Sum_probs=210.6
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcc-cCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQF-TSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCI 80 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 80 (313)
.|++++++++++|+++|||||| |||++ ++|+...+...+++ . .+++.+ +.|+++|+
T Consensus 26 ~N~~~~~~~i~~A~~~gadlvv---fPE~~~~~g~~~~~~~~~~~-------~-~~~~~~------------~~l~~~A~ 82 (286)
T PLN02798 26 ANFATCSRLAKEAAAAGAKLLF---LPECFSFIGDKDGESLAIAE-------P-LDGPIM------------QRYRSLAR 82 (286)
T ss_pred HHHHHHHHHHHHHHHCCCCEEE---cCCCccccCcCchhhhhhcc-------c-CCCHHH------------HHHHHHHH
Confidence 5899999999999999999999 99985 46663222222222 2 235566 99999999
Q ss_pred HcCcEEEeece-eecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCC-----CCCCcccceeCCCCCCCeEEeCCceEEEE
Q psy12521 81 KYNMVIVSPIL-ERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRV-----GDFNESTYYFEGNTGHPVFETEFGRIAIN 154 (313)
Q Consensus 81 ~~~i~iv~G~~-~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~-----~~~~E~~~~~~G~~~~~v~~~~~~rig~~ 154 (313)
+++++|++|.. ++.++.+++||++++|+|+|+++++|+|+||++. +.+.|..+|.+|+. +.+|+++++|+|++
T Consensus 83 ~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~k~g~~ 161 (286)
T PLN02798 83 ESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKT-IVAVDSPVGRLGLT 161 (286)
T ss_pred HcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCe-eeEEecCCceEEEE
Confidence 99999998844 4422237899999999999999999999999642 12358889999985 89999999999999
Q ss_pred eecCCccchHHHHHH-hCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcc
Q psy12521 155 ICYGRHHPLNWLMFG-LNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQF 233 (313)
Q Consensus 155 IC~D~~~pe~~r~~~-~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~ 233 (313)
||||.+||+++|.++ ++|||+|++|++|+...+..+|+.++++||+||++||+++|++|... ++
T Consensus 162 IC~D~~fpe~~r~~a~~~Gadlil~ps~~~~~~~~~~~~~~~~~rAien~~~vv~an~~G~~~--------~~------- 226 (286)
T PLN02798 162 VCYDLRFPELYQQLRFEHGAQVLLVPSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQAGKHN--------EK------- 226 (286)
T ss_pred EEEcccChHHHHHHHHhCCCcEEEECCcCCCCCcHHHHHHHHHHHHHHhCCEEEEecccCcCC--------CC-------
Confidence 999999999999998 99999999999988765567899999999999999999999999753 11
Q ss_pred eeeeeeeEEECCCCceeccCCC-CCccEEEEEeehhhHHHHHHhcCcccccchhhhh
Q psy12521 234 GHFYGSSYITAPNGTRTPGLSR-VRDGLLVAELDLNLNRQVKDVWGFQASIRELVYI 289 (313)
Q Consensus 234 ~~~~G~S~iv~p~G~vla~~~~-~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~ 289 (313)
..++|+|+|++|+|+++++.+. ++|++++++||++.++..|..+|++.++|++.|-
T Consensus 227 ~~~~G~S~ii~p~G~il~~~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~~ 283 (286)
T PLN02798 227 RESYGHALIIDPWGTVVARLPDRLSTGIAVADIDLSLLDSVRTKMPIAEHRRSLEFW 283 (286)
T ss_pred ceeeeeeEEECCCccchhhcCCCCCCCEEEEEecHHHHHHHHHhCcchhccchhhhh
Confidence 4688999999999999999874 5789999999999999999999999999998873
No 19
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3e-46 Score=335.32 Aligned_cols=241 Identities=29% Similarity=0.400 Sum_probs=209.7
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
.|++++++++++|+++|+|||| |||++++||.......... ...+++.+ +.++++|++
T Consensus 16 ~n~~~i~~~i~~a~~~gadliv---~PE~~l~g~~~~~~~~~~~-------~~~~~~~~------------~~l~~~a~~ 73 (261)
T cd07585 16 RNLAVIARWTRKAAAQGAELVC---FPEMCITGYTHVRALSREA-------EVPDGPST------------QALSDLARR 73 (261)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---ecccccccccCCcccchhc-------ccCCChHH------------HHHHHHHHH
Confidence 5889999999999999999999 9999999984322111101 11235566 999999999
Q ss_pred cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCcc
Q psy12521 82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHH 161 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~~ 161 (313)
++++|++|++++.+ +++||++++|+++|. ++.|+|+||++ .|..+|.+|+. +.+|+++++|+|++||||++|
T Consensus 74 ~~~~i~~G~~~~~~--~~~yNs~~vi~~~g~-i~~y~K~~l~~----~E~~~~~~G~~-~~v~~~~~~rig~~IC~D~~~ 145 (261)
T cd07585 74 YGLTILAGLIEKAG--DRPYNTYLVCLPDGL-VHRYRKLHLFR----REHPYIAAGDE-YPVFATPGVRFGILICYDNHF 145 (261)
T ss_pred cCcEEEEeccccCC--CceeEEEEEECCCCc-EeEEeeecCCc----cccceEcCCCC-CceEEcCCceEEEEEEcCCcC
Confidence 99999999998776 799999999999997 68999999987 68899999985 899999999999999999999
Q ss_pred chHHHHHHhCCCcEEEEeCCCCCCC---ChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeee
Q psy12521 162 PLNWLMFGLNGAEIVFNPSATITGL---SEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYG 238 (313)
Q Consensus 162 pe~~r~~~~~Gadlil~ps~~~~~~---~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G 238 (313)
|+++|.++++|||+|++|++|+... ..+.|...+++||+||++|++++|++|... + ..+.|
T Consensus 146 pe~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~~---------~-------~~~~G 209 (261)
T cd07585 146 PENVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRDG---------G-------EVFPG 209 (261)
T ss_pred cHHHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccCC---------C-------ceecc
Confidence 9999999999999999999886532 346788888999999999999999999753 1 46889
Q ss_pred eeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHh--cCcccccchhhh
Q psy12521 239 SSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDV--WGFQASIRELVY 288 (313)
Q Consensus 239 ~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~--~~~~~~~r~~~y 288 (313)
.|+|++|+|+++++++.++++++++++|++.++.+|.. .+++.+||+++|
T Consensus 210 ~S~i~~p~G~v~~~~~~~~e~~l~~~id~~~~~~~r~~~~~~~~~~~~~~~~ 261 (261)
T cd07585 210 GAMILDPYGRVLAETTSGGDGMVVADLDLDLINTVRGRRWISFLRARRPELY 261 (261)
T ss_pred eEEEECCCCCEEeccCCCCCcEEEEEecHHHHHHhhccccCccccccCccCC
Confidence 99999999999999988889999999999999999986 678999999877
No 20
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=6.9e-47 Score=343.73 Aligned_cols=236 Identities=18% Similarity=0.126 Sum_probs=190.6
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccc--cccccccCccccCCCCCcc---ccc--CCCccchHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHT--EFGHFYGSSYITAPNGTRT---PVS--RNSSIVTFDYF 74 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~ 74 (313)
.|+++++++|++|+++|||||| |||++++||....+. .+++ .+ +++.. ++. .......+++.
T Consensus 24 ~Nl~~i~~~i~~A~~~gadLIV---fPE~~ltGy~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 92 (299)
T cd07567 24 KNLDIYEEIIKSAAKQGADIIV---FPEDGLTGFIFTRFVIYPFLE-------DV-PDPEVNWNPCLDPDRFDYTEVLQR 92 (299)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---ccccccCCCCCCccccCchhc-------cc-ccccccccccccccccCchHHHHH
Confidence 6899999999999999999999 999999998432211 1111 00 01100 000 00112245599
Q ss_pred HHHHHHHcCcEEEeeceeecC----------CCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeE
Q psy12521 75 FPQLCIKYNMVIVSPILERDD----------VTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVF 144 (313)
Q Consensus 75 l~~lA~~~~i~iv~G~~~~~~----------~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~ 144 (313)
|+++|++++++|++|+.++.. ..+++|||+++|+++|+++++|||+||+ .|..+|.+|+..+.+|
T Consensus 93 l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~~~~~G~~~~~vf 167 (299)
T cd07567 93 LSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPGFDVPPEPEIVTF 167 (299)
T ss_pred HHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----ccccccCCCCCCceEE
Confidence 999999999999999888642 1136999999999999999999999996 5888999997448999
Q ss_pred EeCCc-eEEEEeecCCccchHHHHHHhC-CCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCc
Q psy12521 145 ETEFG-RIAINICYGRHHPLNWLMFGLN-GAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFT 222 (313)
Q Consensus 145 ~~~~~-rig~~IC~D~~~pe~~r~~~~~-Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~ 222 (313)
+++++ |||++||||++|||++|.++++ |||+|++|++|+...+..+|..++++||+||++||+.||++|..
T Consensus 168 ~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~~~~~~~~w~~l~~arA~eN~~~vi~~N~~g~~------- 240 (299)
T cd07567 168 DTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWFSELPFLTAVQIQQAWAYANGVNLLAANYNNPS------- 240 (299)
T ss_pred ECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccCCCCCchhHHHHHHHHHHHcCceEEEecCCCCc-------
Confidence 99986 9999999999999999999999 99999999999764445689999999999999999999999863
Q ss_pred CCCCCCCCCcceeeeeeeEEECCC-CceeccCCC-CCccEEEEEeehhhHHH
Q psy12521 223 SGDGKPAHTQFGHFYGSSYITAPN-GTRTPGLSR-VRDGLLVAELDLNLNRQ 272 (313)
Q Consensus 223 ~~~g~~~~~~~~~~~G~S~iv~p~-G~vla~~~~-~~e~vl~a~id~~~~~~ 272 (313)
.++|+|+|++|+ |+++++++. .++++++++||++..++
T Consensus 241 ------------~~~G~S~iv~P~~G~v~a~~~~~~~e~~l~~~id~~~~~~ 280 (299)
T cd07567 241 ------------AGMTGSGIYAGRSGALVYHYDNEPGGKLLVAEVPKLPSRR 280 (299)
T ss_pred ------------CccccceEEcCCCCcEEEEecCCCCceEEEEEccCCcccc
Confidence 256999999999 999999764 36889999999987644
No 21
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=7.6e-46 Score=333.23 Aligned_cols=244 Identities=24% Similarity=0.350 Sum_probs=207.9
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccc-cccccCccccCCCCCcccccCCCccchHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEF-GHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCI 80 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 80 (313)
.|++++++++++|+++|+|||| |||++++||........ .+ ....++.+ +.|+++|+
T Consensus 15 ~n~~~~~~~i~~A~~~g~dliv---fPE~~l~g~~~~~~~~~~~~-------~~~~~~~~------------~~l~~~a~ 72 (265)
T cd07572 15 ANLARAKELIEEAAAQGAKLVV---LPECFNYPGGTDAFKLALAE-------EEGDGPTL------------QALSELAK 72 (265)
T ss_pred HHHHHHHHHHHHHHHCCCCEEE---CCccccCcCcchhhhhhhhc-------cccCChHH------------HHHHHHHH
Confidence 5899999999999999999999 99999999843222111 00 11234566 99999999
Q ss_pred HcCcEEEeec-eeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCC-----CCCCcccceeCCCCCCCeEEeCCceEEEE
Q psy12521 81 KYNMVIVSPI-LERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRV-----GDFNESTYYFEGNTGHPVFETEFGRIAIN 154 (313)
Q Consensus 81 ~~~i~iv~G~-~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~-----~~~~E~~~~~~G~~~~~v~~~~~~rig~~ 154 (313)
+++++|++|. .++.+.++++||++++|+|+|+++++|+|+||++. +.+.|..+|.+|+. +.+|+++++|+|++
T Consensus 73 ~~~i~i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~ 151 (265)
T cd07572 73 EHGIWLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDE-VVVVDTPFGKIGLG 151 (265)
T ss_pred HCCeEEEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCc-ceEEecCCceEEEE
Confidence 9999999884 45443236899999999999999999999999632 13578889999996 89999999999999
Q ss_pred eecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcce
Q psy12521 155 ICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFG 234 (313)
Q Consensus 155 IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~ 234 (313)
||||.+||++++.++++|||+|++|++|+...+..+|..++++||+||++++++||++|.+.. + +
T Consensus 152 IC~D~~~pe~~r~~~~~gadli~~p~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~G~~~~--------~-------~ 216 (265)
T cd07572 152 ICYDLRFPELARALARQGADILTVPAAFTMTTGPAHWELLLRARAIENQCYVVAAAQAGDHEA--------G-------R 216 (265)
T ss_pred EEeccCcHHHHHHHHHCCCCEEEECCCCCCCcchHHHHHHHHHHHHhcCCEEEEEcccccCCC--------C-------C
Confidence 999999999999999999999999999987666678998899999999999999999997541 1 4
Q ss_pred eeeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccc
Q psy12521 235 HFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIR 284 (313)
Q Consensus 235 ~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r 284 (313)
.+.|.|+|++|+|+++++++.+ +++++++||++.+++.|..+++++|+|
T Consensus 217 ~~~G~S~i~~p~G~il~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~~~~ 265 (265)
T cd07572 217 ETYGHSMIVDPWGEVLAEAGEG-EGVVVAEIDLDRLEEVRRQIPVLKHRR 265 (265)
T ss_pred eecceeEEECCCcHHHhhcCCC-CcEEEEEeCHHHHHHHHHhCcchhhcC
Confidence 6889999999999999998866 899999999999999999999988875
No 22
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.9e-45 Score=328.86 Aligned_cols=238 Identities=21% Similarity=0.315 Sum_probs=206.1
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCcc--ccccccccCccccCCCCCcccccCCCccchHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAH--TEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLC 79 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA 79 (313)
.|++++++++++|+++|+|||| |||++++|+..... .+.++ . .+++.+ +.|+++|
T Consensus 14 ~n~~~~~~~i~~a~~~g~dliv---fPE~~l~g~~~~~~~~~~~~~-------~-~~~~~~------------~~l~~~a 70 (255)
T cd07581 14 ENLEKVRRLLAEAAAAGADLVV---FPEYTMARFGDGLDDYARVAE-------P-LDGPFV------------SALARLA 70 (255)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---CcchhcCCCCcchhhHHhhhc-------c-CCCHHH------------HHHHHHH
Confidence 5899999999999999999999 99999999833221 11222 1 134455 9999999
Q ss_pred HHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCC-CCeEEeCCceEEEEeecC
Q psy12521 80 IKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTG-HPVFETEFGRIAINICYG 158 (313)
Q Consensus 80 ~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~-~~v~~~~~~rig~~IC~D 158 (313)
++++++|++|++++.++ +++||++++|+++|+++++|+|+||++...+.|..+|.+|+.. +.+++++++|+|++||||
T Consensus 71 ~~~~i~iv~G~~~~~~~-~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D 149 (255)
T cd07581 71 RELGITVVAGMFEPAGD-GRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELPPVVFVVGGVKVGLATCYD 149 (255)
T ss_pred HHcCeEEEEEeeeeCCC-CcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCCceEEecCCceEEEEEEec
Confidence 99999999999988652 4899999999999999999999999875556799999999852 567888889999999999
Q ss_pred CccchHHHHHHhCCCcEEEEeCCCCCCC-ChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeee
Q psy12521 159 RHHPLNWLMFGLNGAEIVFNPSATITGL-SEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFY 237 (313)
Q Consensus 159 ~~~pe~~r~~~~~Gadlil~ps~~~~~~-~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~ 237 (313)
.+||++++.++++|||+|++|++|+... ..++|..+.++||+||++|+++||++|. .+.
T Consensus 150 ~~~pe~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~--------------------~~~ 209 (255)
T cd07581 150 LRFPELARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP--------------------RGI 209 (255)
T ss_pred ccCHHHHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC--------------------Ccc
Confidence 9999999999999999999999987532 4578988999999999999999999985 256
Q ss_pred eeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccc
Q psy12521 238 GSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIR 284 (313)
Q Consensus 238 G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r 284 (313)
|.|+|++|+|+++++.+. +++++++++|++.++++|..++++.|||
T Consensus 210 G~S~i~~p~G~i~~~~~~-~~~~l~~~id~~~~~~~r~~~~~~~~~~ 255 (255)
T cd07581 210 GRSMVVDPLGVVLADLGE-REGLLVADIDPERVEEAREALPVLENRR 255 (255)
T ss_pred cceEEECCCcceeeecCC-CCcEEEEEeCHHHHHHHHHhCcchhcCC
Confidence 999999999999999874 5999999999999999999999999886
No 23
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.6e-45 Score=332.04 Aligned_cols=244 Identities=25% Similarity=0.361 Sum_probs=208.2
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCcc-ccccccccCccccCCCCCcccccCCCccchHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAH-TEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCI 80 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 80 (313)
.|++++++++++|+++|||||| |||++++|+...+. .+.+. . ..++.+ +.|+++++
T Consensus 16 ~n~~~~~~~i~~A~~~ga~liv---~PE~~~~g~~~~~~~~~~~~-------~-~~~~~~------------~~l~~~a~ 72 (269)
T cd07586 16 ENLEKHLEIIETARERGADLVV---FPELSLTGYNLGDLVYEVAM-------H-ADDPRL------------QALAEASG 72 (269)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---ecchhccCCCchhhhhhhhc-------c-cchHHH------------HHHHHHcC
Confidence 5899999999999999999999 99999999843221 11111 1 123333 56655552
Q ss_pred HcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCc
Q psy12521 81 KYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRH 160 (313)
Q Consensus 81 ~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~ 160 (313)
++.|++|++++.+ ++++||++++| ++|+++++|+|+|||.++.+.|..+|.+|+. +.+|+++++|||++||||++
T Consensus 73 --~~~ii~G~~~~~~-~~~~yNt~~vi-~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~-~~vf~~~~~~ig~~IC~D~~ 147 (269)
T cd07586 73 --GICVVFGFVEEGR-DGRFYNSAAYL-EDGRVVHVHRKVYLPTYGLFEEGRYFAPGSH-LRAFDTRFGRAGVLICEDAW 147 (269)
T ss_pred --CCEEEEeCeEEcC-CCcEEEEEEEe-cCCEEEEEEEeEeCCCCCccceeeeecCCCc-ceEEEeCCeEEEEEEEeccC
Confidence 8999999988763 27899999999 8999999999999987666788899999996 89999999999999999999
Q ss_pred cchHHHHHHhCCCcEEEEeCCCCCCC------ChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcce
Q psy12521 161 HPLNWLMFGLNGAEIVFNPSATITGL------SEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFG 234 (313)
Q Consensus 161 ~pe~~r~~~~~Gadlil~ps~~~~~~------~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~ 234 (313)
||++++.++++|||+|++|+++++.. ...+|..+.++||+||+++|++||++|.++ + .
T Consensus 148 fp~~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~---------~-------~ 211 (269)
T cd07586 148 HPSLPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVED---------G-------V 211 (269)
T ss_pred CcHHHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCcC---------C-------c
Confidence 99999999999999999999986531 135789999999999999999999999864 1 4
Q ss_pred eeeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhh
Q psy12521 235 HFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYI 289 (313)
Q Consensus 235 ~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~ 289 (313)
.++|+|+|++|+|+++++.+.+++++++++||++.++..|..++++.++++++|+
T Consensus 212 ~~~G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~ 266 (269)
T cd07586 212 YFWGGSRVVDPDGEVVAEAPLFEEDLLVAELDRSAIRRARFFSPTFRDEDIRLVL 266 (269)
T ss_pred eEeCCcEEECCCCCEEEecCCccccEEEEEecHHHHHHHHhhCccccccChhhhh
Confidence 6889999999999999998877889999999999999999999999999999986
No 24
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.7e-45 Score=330.10 Aligned_cols=239 Identities=27% Similarity=0.416 Sum_probs=203.5
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCc---cccccccccCccccCCCCCcccccCCCccchHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPA---HTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQL 78 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 78 (313)
.|++++.+++++|+ ||||| |||++++||.... +.++++ ...+++.+ +.|+++
T Consensus 16 ~N~~~~~~~i~~a~---adlvv---fPE~~l~gy~~~~~~~~~~~~~-------~~~~~~~~------------~~l~~~ 70 (259)
T cd07577 16 KNLKKVESLIKGVE---ADLIV---LPELFNTGYAFTSKEEVASLAE-------SIPDGPTT------------RFLQEL 70 (259)
T ss_pred HHHHHHHHHHHHhC---CCEEE---cccccccCCCcCCHHHHHHhhc-------ccCCChHH------------HHHHHH
Confidence 58899999999884 99999 9999999984221 112222 11245667 999999
Q ss_pred HHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecC
Q psy12521 79 CIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYG 158 (313)
Q Consensus 79 A~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D 158 (313)
|++++++|++|+.++.+ +++||++++|+++| ++++|+|+||++ .|..+|.+|+..+.+|+++++|+|++||||
T Consensus 71 a~~~~i~ii~G~~~~~~--~~~yNs~~vi~~~G-i~~~y~K~~l~~----~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D 143 (259)
T cd07577 71 ARETGAYIVAGLPERDG--DKFYNSAVVVGPEG-YIGIYRKTHLFY----EEKLFFEPGDTGFRVFDIGDIRIGVMICFD 143 (259)
T ss_pred HHHhCcEEEecceeccC--CceEEEEEEECCCc-cEeeEeeccCCh----hhhccccCCCCCCceEEeCCcEEEEEEEcC
Confidence 99999999999988876 88999999999999 899999999986 688999999944899999999999999999
Q ss_pred CccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeee
Q psy12521 159 RHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYG 238 (313)
Q Consensus 159 ~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G 238 (313)
.+|||+++.++++|||+|++|++|+. ..|..++++||+||++|+++||++|..... ++ ...|.|
T Consensus 144 ~~fpe~~r~~~~~Gadli~~ps~~~~----~~~~~~~~~rA~en~~~vv~~n~~G~~~~~------~~------~~~~~G 207 (259)
T cd07577 144 WYFPEAARTLALKGADIIAHPANLVL----PYCPKAMPIRALENRVFTITANRIGTEERG------GE------TLRFIG 207 (259)
T ss_pred cccchHHHHHHHcCCCEEEECCccCC----chhhhhhhHhhhhcCceEEEEecCcccCCC------CC------CceEee
Confidence 99999999999999999999999864 367777899999999999999999976311 00 146889
Q ss_pred eeEEECCCCceeccCCCCCccEEEEEeehhhHHHHH--HhcCcccccchhhh
Q psy12521 239 SSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVK--DVWGFQASIRELVY 288 (313)
Q Consensus 239 ~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r--~~~~~~~~~r~~~y 288 (313)
.|+|++|+|+++++++.++++++++++|++.++..| ..+|++.+||+++|
T Consensus 208 ~S~i~~p~G~i~~~~~~~~e~~~~~~id~~~~~~~~~~~~~~~~~~~r~~~~ 259 (259)
T cd07577 208 KSQITSPKGEVLARAPEDGEEVLVAEIDPRLARDKRINEENDIFKDRRPEFY 259 (259)
T ss_pred eeEEECCCCCEEeecCCCCCcEEEEEEchHHhhcccccccCchhhhcCcccC
Confidence 999999999999998877899999999999987755 67889999999876
No 25
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.2e-45 Score=328.24 Aligned_cols=240 Identities=30% Similarity=0.412 Sum_probs=201.1
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
.|++++.+++++|+++|+|||| |||++++||...+......+.. . .+++.+ +.|+++|++
T Consensus 17 ~n~~~~~~~i~~A~~~gadliv---fPE~~l~gy~~~~~~~~~~~~~----~-~~~~~~------------~~l~~~a~~ 76 (258)
T cd07578 17 RNIERLLALCEEAARAGARLIV---TPEMATTGYCWYDRAEIAPFVE----P-IPGPTT------------ARFAELARE 76 (258)
T ss_pred HHHHHHHHHHHHHHhCCCCEEE---cccccccCCCcCCHHHhhhhcc----c-CCCHHH------------HHHHHHHHH
Confidence 5899999999999999999999 9999999984222211111110 1 234556 999999999
Q ss_pred cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCcc
Q psy12521 82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHH 161 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~~ 161 (313)
++++|++|++++...++++||++++|+++| ++++|+|+|++. .|..||.+|+..+.+|+++++|+|++||||++|
T Consensus 77 ~~i~ii~G~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~----~e~~~~~~g~~~~~v~~~~~~rig~~IC~D~~f 151 (258)
T cd07578 77 HDCYIVVGLPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI----SEPKWAADGDLGHQVFDTEIGRIALLICMDIHF 151 (258)
T ss_pred cCcEEEEecceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc----ccccccCCCCCCceEEECCCccEEEEEeeCCCc
Confidence 999999999887532368999999999999 789999999864 688899999855789999999999999999999
Q ss_pred chHHHHHHhCCCcEEEEeCCCCCCCC-hhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeeeee
Q psy12521 162 PLNWLMFGLNGAEIVFNPSATITGLS-EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSS 240 (313)
Q Consensus 162 pe~~r~~~~~Gadlil~ps~~~~~~~-~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G~S 240 (313)
||++|.++++||+++++|++|+.... ...| .+||+||++++++||++|.+. + ..++|+|
T Consensus 152 pe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~----~~rA~en~~~vv~an~~G~~~---------~-------~~~~G~S 211 (258)
T cd07578 152 FETARLLALGGADVICHISNWLAERTPAPYW----INRAFENGCYLIESNRWGLER---------G-------VQFSGGS 211 (258)
T ss_pred hHHHHHHHHcCCCEEEEcCCCCCCCCcchHH----HHhhhcCCeEEEEecceeccC---------C-------cceeeEE
Confidence 99999999999999999999875422 2334 479999999999999999753 1 4688999
Q ss_pred EEECCCCceeccCCCCCccEEEEEeehhhHHHHHHh-cCcccccchhh
Q psy12521 241 YITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDV-WGFQASIRELV 287 (313)
Q Consensus 241 ~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~-~~~~~~~r~~~ 287 (313)
+|++|+|+++++.+ .++++++++||++.++..|.. +|++.+||+++
T Consensus 212 ~ii~p~G~il~~~~-~~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~ 258 (258)
T cd07578 212 CIIEPDGTIQASID-SGDGVALGEIDLDRARHRQFPGELVFTARRPEL 258 (258)
T ss_pred EEECCCCcEeeccC-CCCceEEEEecchHhhhhhcccchhhhhhccCC
Confidence 99999999999887 567999999999999999975 79999999864
No 26
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=8.5e-45 Score=331.38 Aligned_cols=251 Identities=21% Similarity=0.239 Sum_probs=200.1
Q ss_pred cccccHHHHHHhHHh-----cCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHH
Q psy12521 2 SEIFHSPAIANGYFT-----CAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFP 76 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~-----~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (313)
.|++++.++|++|++ +|||||| |||++++||.......... +...... .+++.+ +.|+
T Consensus 21 ~Nl~~~~~~i~~A~~~~~~~~gadliv---fPE~~ltGy~~~~~~~~~~-~~~~a~~-~~~~~~------------~~l~ 83 (294)
T cd07582 21 ANIDRINEQIDAAVGFSGPGLPVRLVV---LPEYALQGFPMGEPREVWQ-FDKAAID-IPGPET------------EALG 83 (294)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEE---cCccccccCCcccchhhhh-hhhcccc-CCCHHH------------HHHH
Confidence 589999999999987 4799999 9999999994322110000 0000113 256777 9999
Q ss_pred HHHHHcCcEEEeeceeecCC-CCeEEEEEEEEcCCCcEeeeEeecCCCCCCC-------CCc-ccceeCC-CCCCCeEEe
Q psy12521 77 QLCIKYNMVIVSPILERDDV-TDIIWNTAVVINNHGRVMGKHRKNHIPRVGD-------FNE-STYYFEG-NTGHPVFET 146 (313)
Q Consensus 77 ~lA~~~~i~iv~G~~~~~~~-~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~-------~~E-~~~~~~G-~~~~~v~~~ 146 (313)
++|++++++|++|..++.+. .+++||++++|+|+|+++++|+|+||+.... +.| ..++.+| +..+.++++
T Consensus 84 ~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~~~~v~~~ 163 (294)
T cd07582 84 EKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDALFPVADT 163 (294)
T ss_pred HHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCcccccceeecC
Confidence 99999999999999877532 2579999999999999999999999975210 111 1234455 323789999
Q ss_pred CCceEEEEeecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCC
Q psy12521 147 EFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDG 226 (313)
Q Consensus 147 ~~~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g 226 (313)
+++|||++||||++|||++|.++++|||+|++|++|+......+|..++++||+||++||+.||++|..+.+
T Consensus 164 ~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~arA~en~~~vv~aN~~G~~~~~-------- 235 (294)
T cd07582 164 EIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSSSEVPSVELDPWEIANRARALENLAYVVSANSGGIYGSP-------- 235 (294)
T ss_pred CCceEEEEEeecccChHHHHHHHHCCCcEEEEcCCCCCCcchhhHHHHHHHHHHhcCCEEEEecccccCccc--------
Confidence 999999999999999999999999999999999998765455689888999999999999999999875310
Q ss_pred CCCCCcceeeeeeeEEECCCCceeccCCCC-CccEEEEEeehhhHHHHHHhcCccc
Q psy12521 227 KPAHTQFGHFYGSSYITAPNGTRTPGLSRV-RDGLLVAELDLNLNRQVKDVWGFQA 281 (313)
Q Consensus 227 ~~~~~~~~~~~G~S~iv~p~G~vla~~~~~-~e~vl~a~id~~~~~~~r~~~~~~~ 281 (313)
. ....|.|.|+|+||+|+++++++.. ++++++++||++.++..|..+++-+
T Consensus 236 ~----~~~~~~G~S~ivdp~G~vla~~~~~~~e~il~~~id~~~~~~~R~~~~~~~ 287 (294)
T cd07582 236 Y----PADSFGGGSMIVDYKGRVLAEAGYGPGSMVAGAEIDIEALRRARARPGMHN 287 (294)
T ss_pred c----cCceecceeEEECCCCCEEEeCCCCCCCeEEEEEEcHHHHHHHHHhcCccc
Confidence 0 0136889999999999999998877 7899999999999999999887643
No 27
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=3.5e-44 Score=320.39 Aligned_cols=234 Identities=19% Similarity=0.289 Sum_probs=202.5
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
.|++++++++++|++ |||||| |||++++||.... ..+++ . .+++.+ +.|+++|++
T Consensus 17 ~N~~~~~~~i~~a~~-gadlvv---fPE~~l~g~~~~~-~~~~~-------~-~~~~~~------------~~l~~la~~ 71 (252)
T cd07575 17 ANLAHFEEKIEQLKE-KTDLIV---LPEMFTTGFSMNA-EALAE-------P-MNGPTL------------QWMKAQAKK 71 (252)
T ss_pred HHHHHHHHHHHHhhc-CCCEEE---eCCcCcCCCCccH-HHhhc-------c-cCChHH------------HHHHHHHHH
Confidence 488999999999998 999999 9999999983221 22222 2 135566 999999999
Q ss_pred cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCcc
Q psy12521 82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHH 161 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~~ 161 (313)
+++.|++|+.++.+ +++||++++++++|++ ..|+|+||++++ .|..+|.+|+. +.+|+++++|+|++||||++|
T Consensus 72 ~~i~i~~~~~~~~~--~~~yNs~~~i~~~G~i-~~y~K~~l~~~~--~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~~~ 145 (252)
T cd07575 72 KGAAITGSLIIKEG--GKYYNRLYFVTPDGEV-YHYDKRHLFRMA--GEHKVYTAGNE-RVIVEYKGWKILLQVCYDLRF 145 (252)
T ss_pred CCeEEEEEEEEccC--CceEEEEEEECCCCCE-EEEeeeecCCCC--CccceecCCCC-ceEEEECCEEEEEEEEeccCC
Confidence 99999988887766 7899999999999985 599999998753 68889999985 899999999999999999999
Q ss_pred chHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeeeeeE
Q psy12521 162 PLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSY 241 (313)
Q Consensus 162 pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G~S~ 241 (313)
||+++.++. ||++++|++|+.. ...+|....++||+||++||+.||++|.++. + ..+.|.|+
T Consensus 146 pe~~r~~~~--a~lil~~s~~~~~-~~~~~~~~~~arA~en~~~vv~~n~~G~~~~--------~-------~~~~G~S~ 207 (252)
T cd07575 146 PVWSRNTND--YDLLLYVANWPAP-RRAAWDTLLKARAIENQAYVIGVNRVGTDGN--------G-------LEYSGDSA 207 (252)
T ss_pred hHHHHhhcC--CCEEEEeCCCCCC-chHHHHHHhHHHHhhccceEEEecccccCCC--------C-------ceEcceeE
Confidence 999998754 9999999999765 4578998899999999999999999997641 1 46889999
Q ss_pred EECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccch
Q psy12521 242 ITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRE 285 (313)
Q Consensus 242 iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~ 285 (313)
|++|+|+++++.+.+ ++++++++|++.++.+|..++++.++|.
T Consensus 208 i~~p~G~~l~~~~~~-e~~i~~~id~~~~~~~r~~~~~~~~~~~ 250 (252)
T cd07575 208 VIDPLGEPLAEAEED-EGVLTATLDKEALQEFREKFPFLKDADS 250 (252)
T ss_pred EECCCCceeeEcCCC-ceEEEEEECHHHHHHHHhhCCcccccCc
Confidence 999999999998866 9999999999999999999999988764
No 28
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=6.8e-44 Score=322.35 Aligned_cols=245 Identities=25% Similarity=0.366 Sum_probs=206.8
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCc--cccccccccCccccCCCCCcccccCCCccchHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPA--HTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLC 79 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA 79 (313)
.|++++++++++|+++|||||| |||++++||.... ..+.+. ....++.+ +.++++|
T Consensus 19 ~N~~~~~~~i~~a~~~ga~Lvv---fPEl~~tgy~~~~~~~~~~~~-------~~~~~~~~------------~~l~~~a 76 (274)
T COG0388 19 ENLARILRLIREAAARGADLVV---FPELFLTGYPCEDDLFLEEAA-------AEAGEETL------------EFLAALA 76 (274)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---CCcccccCCCcccHHHHHhhh-------hccCChHH------------HHHHHHH
Confidence 5899999999999999999999 9999999995432 111211 11345677 9999999
Q ss_pred HHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCC
Q psy12521 80 IKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGR 159 (313)
Q Consensus 80 ~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~ 159 (313)
+++.++|++|...... ..||++++++++|+++++|||+||++. .+.|+.+|.+|+....+|+++++|+|++||||+
T Consensus 77 ~~~~~~ivg~~~~~~~---~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~D~ 152 (274)
T COG0388 77 EEGGVIIVGGPLPERE---KLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGVVVFETDGGKIGLLICYDL 152 (274)
T ss_pred HhCCeEEEEeeeeccc---cceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccceeEEeCCceEEEEEEeec
Confidence 9666666666544431 689999999999999999999999975 457999999999633599999999999999999
Q ss_pred ccchHHHHH-HhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeee
Q psy12521 160 HHPLNWLMF-GLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYG 238 (313)
Q Consensus 160 ~~pe~~r~~-~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G 238 (313)
+|||+.+.+ +.+||++|++|++|+...+.++|..++++||+||++||+.||++|.... + ..|+|
T Consensus 153 ~fPe~~~~~~a~~Gaeii~~p~a~~~~~~~~~w~~l~~arA~en~~~vv~~n~~g~~~~--------~-------~~~~G 217 (274)
T COG0388 153 RFPELARRLLALGGAELLLVPAAWPAERGLDHWEVLLRARAIENQVYVLAANRAGFDGA--------G-------LEFCG 217 (274)
T ss_pred cCHHHHHHHHHhcCCeEEEEcCCCCCcccHHHHHHHHHHHhhhcCceEEEecccCCCCC--------c-------cEEec
Confidence 999988777 7889999999999998876689999999999999999999999998641 1 47999
Q ss_pred eeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhh
Q psy12521 239 SSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELV 287 (313)
Q Consensus 239 ~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~ 287 (313)
+|+|++|+|++++++..++|+++++++|++.+...|..++.+.+++...
T Consensus 218 ~S~i~~p~G~v~~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~~~~~ 266 (274)
T COG0388 218 HSAIIDPDGEVLAEAGEEEEGVLLADIDLAELAEVRRKIPVLKDRRRFD 266 (274)
T ss_pred ceEEECCCccEEeecCCCCCcEEEEEECHHHHHHHHhhCcchhhcccch
Confidence 9999999999999998668999999999999999999999876554433
No 29
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=5.3e-44 Score=330.69 Aligned_cols=233 Identities=22% Similarity=0.237 Sum_probs=196.9
Q ss_pred cccccHHHHHHhHH--hcCCcEEEccCCCCcccCCCCCCc--cccccccccCccccCCCCCcccccCCCccchHHHHHHH
Q psy12521 2 SEIFHSPAIANGYF--TCAINRVGSETFPNQFTSGDGKPA--HTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQ 77 (313)
Q Consensus 2 ~~l~~~~~~i~~A~--~~gadlvv~~~fPE~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (313)
.|++++.+++++|+ ..|+|||| |||++++|+.... +.+.+. . .+++.+ +.|++
T Consensus 33 ~Nl~~i~~~i~~a~~~~~gadLVV---fPE~~l~G~~y~~~~~~~~a~-------~-i~g~~~------------~~l~~ 89 (345)
T PRK13286 33 ENARKIADMIVGMKQGLPGMDLVI---FPEYSTHGIMYDRQEMYETAS-------T-IPGEET------------AIFAE 89 (345)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEE---cCCccccCCCcChHHHHHhcc-------c-CCCHHH------------HHHHH
Confidence 58899999999987 46999999 9999999952211 222332 3 357778 99999
Q ss_pred HHHHcCcEEEeece-eecC--CCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCc-eEEE
Q psy12521 78 LCIKYNMVIVSPIL-ERDD--VTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFG-RIAI 153 (313)
Q Consensus 78 lA~~~~i~iv~G~~-~~~~--~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~-rig~ 153 (313)
+|+++++++++|+. ++.. .++++|||+++|+|+|+++++|||+|++. +...|.||+. ..+|+++.+ |||+
T Consensus 90 ~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~-----~~e~~~pG~~-~~v~~~~~G~kiG~ 163 (345)
T PRK13286 90 ACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC-----PIEGWYPGDC-TYVSEGPKGLKISL 163 (345)
T ss_pred HHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc-----hhhceecCCC-CEEEeCCCCcEEEE
Confidence 99999999998876 3321 12569999999999999999999999763 4456889996 789998755 9999
Q ss_pred EeecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcc
Q psy12521 154 NICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQF 233 (313)
Q Consensus 154 ~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~ 233 (313)
+||||.+|||++|.++++|||+|++|++|+.+ ..++|..++++||+||++||+.||++|.++ +
T Consensus 164 lIC~D~~fPE~~R~la~~GAelii~psa~~~~-~~~~~~~~~rarA~eN~~yVv~aN~~G~~~---------~------- 226 (345)
T PRK13286 164 IICDDGNYPEIWRDCAMKGAELIVRCQGYMYP-AKEQQVLVAKAMAWANNCYVAVANAAGFDG---------V------- 226 (345)
T ss_pred EEEecccChHHHHHHHHcCCeEEEEccccCCC-chHHHHHHHHHHHHHCCCEEEEEecccccC---------C-------
Confidence 99999999999999999999999999998765 457899999999999999999999999753 1
Q ss_pred eeeeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcc
Q psy12521 234 GHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQ 280 (313)
Q Consensus 234 ~~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~ 280 (313)
..|.|+|+|+||+|+++++++.+++++++++||++.++.+|..+++.
T Consensus 227 ~~~~G~S~Ivdp~G~vla~~~~~~e~ii~adld~~~i~~~R~~~~~~ 273 (345)
T PRK13286 227 YSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSVSQIRDARRNDQSQ 273 (345)
T ss_pred ceeeeeEEEECCCCcEEEecCCCCCeEEEEEEeHHHHHHHHHhCCcc
Confidence 46889999999999999998877789999999999999999988654
No 30
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=1.4e-44 Score=324.40 Aligned_cols=243 Identities=19% Similarity=0.194 Sum_probs=200.1
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
+|++++++++++|+++|+|||| |||++++||...+...... . ..+.. +.++.|.+.+++
T Consensus 16 ~N~~~~~~~i~~A~~~gadlvv---fPE~~l~gy~~~~~~~~~~-------~--~~~~~---------~~~~~la~~~~~ 74 (261)
T cd07570 16 GNAEKILEAIREAKAQGADLVV---FPELSLTGYPPEDLLLRPD-------F--LEAAE---------EALEELAAATAD 74 (261)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---ccchhccCCChHHHhhCHH-------H--HHHHH---------HHHHHHHHhccc
Confidence 5899999999999999999999 9999999983211110000 0 00111 122555555555
Q ss_pred cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCcc
Q psy12521 82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHH 161 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~~ 161 (313)
++++|++|++++.+ +++||++++| ++|+++++|+|+||++++.+.|..+|.+|+. +.+|+++++|||++||||++|
T Consensus 75 ~~i~ii~G~~~~~~--~~~yNs~~~i-~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~~f 150 (261)
T cd07570 75 LDIAVVVGLPLRHD--GKLYNAAAVL-QNGKILGVVPKQLLPNYGVFDEKRYFTPGDK-PDVLFFKGLRIGVEICEDLWV 150 (261)
T ss_pred CCcEEEEeceEecC--CCEEEEEEEE-eCCEEEEEEECccCcCCccccccccCccCCC-CCeEEECCEEEEEEeecccCC
Confidence 69999999998876 7899999999 6999999999999999888889999999996 899999999999999999999
Q ss_pred chH-HHHHHhCCCcEEEEeCCCCCCCC-hhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeeee
Q psy12521 162 PLN-WLMFGLNGAEIVFNPSATITGLS-EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGS 239 (313)
Q Consensus 162 pe~-~r~~~~~Gadlil~ps~~~~~~~-~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G~ 239 (313)
|++ +|.++++|||++++|++|+...+ ..+|..++++||+||++|++.||++|... + ..|.|+
T Consensus 151 pe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~---------~-------~~~~G~ 214 (261)
T cd07570 151 PDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGGQD---------D-------LVFDGG 214 (261)
T ss_pred CCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCCCc---------e-------EEEECc
Confidence 999 99999999999999999876433 35677889999999999999999988753 1 578999
Q ss_pred eEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhh
Q psy12521 240 SYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELV 287 (313)
Q Consensus 240 S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~ 287 (313)
|+|++|+|+++++++.+ +.+++++|++.++..|..+++..+....+
T Consensus 215 S~ii~p~G~vl~~~~~~--~~~~~~id~~~~~~~r~~~~~~~~~~~~~ 260 (261)
T cd07570 215 SFIADNDGELLAEAPRF--EEDLADVDLDRLRSERRRNSSFLDEEAEI 260 (261)
T ss_pred eEEEcCCCCEEEecCcc--eEEEEEEEEecCcccccccCCCccchhhc
Confidence 99999999999998744 78999999999999999888776544433
No 31
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.9e-44 Score=326.79 Aligned_cols=251 Identities=22% Similarity=0.265 Sum_probs=200.4
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCC---CCccccccccccCccccCCCCCcccccCCCccchHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDG---KPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQL 78 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 78 (313)
.|++++++++++|+++|||||| |||++++|+. ......+.+... .... ..++.+ +.|+++
T Consensus 18 ~n~~~i~~~i~~A~~~gadliv---fPE~~~~g~~~~~~~~~~~~~~~~~-~~~~-~~~~~~------------~~l~~~ 80 (280)
T cd07574 18 EFAAKVEYWVAEAAGYGADLLV---FPEYFTMELLSLLPEAIDGLDEAIR-ALAA-LTPDYV------------ALFSEL 80 (280)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---CchHhHHHHHHhCCcccccHHHHHH-HHHH-HHHHHH------------HHHHHH
Confidence 4789999999999999999999 9999987741 111000000000 0000 113344 999999
Q ss_pred HHHcCcEEEeece-eecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeec
Q psy12521 79 CIKYNMVIVSPIL-ERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICY 157 (313)
Q Consensus 79 A~~~~i~iv~G~~-~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~ 157 (313)
|++++++|++|+. ++.+ +++||++++++|+|.+ ++|+|+||+++. .|..+|.+|+. +.+|+++++|+|++|||
T Consensus 81 a~~~~i~iv~G~~~~~~~--~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~-~~v~~~~~~~ig~~IC~ 154 (280)
T cd07574 81 ARKYGINIIAGSMPVRED--GRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDK-LKVFDTDLGKIGILICY 154 (280)
T ss_pred HHHhCCEEEecceEEcCC--CCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCC-ceEEecCCccEEEEEec
Confidence 9999999999964 4444 7899999999999986 999999998742 23345789985 89999999999999999
Q ss_pred CCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeee
Q psy12521 158 GRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFY 237 (313)
Q Consensus 158 D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~ 237 (313)
|++||+++|.++++|||+|++|++++...+..+|...+++||+||++|+++||++|...... ++ ..+.
T Consensus 155 D~~fpe~~r~l~~~ga~ii~~ps~~~~~~~~~~~~~~~~arA~en~~~vv~an~~G~~~~~~-----~~-------~~~~ 222 (280)
T cd07574 155 DSEFPELARALAEAGADLLLVPSCTDTRAGYWRVRIGAQARALENQCYVVQSGTVGNAPWSP-----AV-------DVNY 222 (280)
T ss_pred ccccHHHHHHHHHcCCCEEEECCcCCccccHHHHHHHHHHHHHhhCceEEEeCCCCCCCCcc-----cc-------cccc
Confidence 99999999999999999999999987654555777778999999999999999999753100 01 4688
Q ss_pred eeeEEECCC------CceeccCCCCCccEEEEEeehhhHHHHHHhcCc--ccccchhh
Q psy12521 238 GSSYITAPN------GTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGF--QASIRELV 287 (313)
Q Consensus 238 G~S~iv~p~------G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~--~~~~r~~~ 287 (313)
|+|+|++|. |.+++++..++|++++++||++.++..|..+|+ ++++|+|+
T Consensus 223 G~S~i~~P~~~~~~~g~~l~~~~~~~e~~~~a~iD~~~~~~~R~~~~~~~~~~~~~~~ 280 (280)
T cd07574 223 GQAAVYTPCDFGFPEDGILAEGEPNTEGWLIADLDLEALRRLREEGSVRNLRDWREDL 280 (280)
T ss_pred ccceeecCCCCCCCCCCeEeecCCCCCceEEEecCHHHHHHHhhcCCccCcccCcccC
Confidence 999999996 889999877789999999999999999999764 67888875
No 32
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=1.5e-43 Score=327.17 Aligned_cols=233 Identities=23% Similarity=0.285 Sum_probs=197.7
Q ss_pred cccccHHHHHHhHHhc--CCcEEEccCCCCcccCCCCCCcc--ccccccccCccccCCCCCcccccCCCccchHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTC--AINRVGSETFPNQFTSGDGKPAH--TEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQ 77 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~--gadlvv~~~fPE~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (313)
+|++++.+++++|++. |+|||| |||++++|+....+ .+++. . .+++.+ +.|++
T Consensus 34 ~Nl~~i~~~i~~A~~~~~gadLVV---fPE~~l~G~~~~~~~~~~~a~-------~-~~g~~~------------~~l~~ 90 (333)
T PRK13287 34 KQIEQIIKTVHKTKAGYPGLDLIV---FPEYSTQGLNTKKWTTEEFLC-------T-VDGPEV------------DAFAQ 90 (333)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEE---cCCcccccCCccccchhhhcc-------c-CCCHHH------------HHHHH
Confidence 5889999999999874 999999 99999999843211 11221 2 256777 99999
Q ss_pred HHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCC-ceEEEEee
Q psy12521 78 LCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEF-GRIAINIC 156 (313)
Q Consensus 78 lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~-~rig~~IC 156 (313)
+|+++++++++|+.++.++..++|||+++|+|+|+++++|||+|++. ....|.+|+..+++|+++. .|+|++||
T Consensus 91 ~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~~~v~~~~~g~kiG~~IC 165 (333)
T PRK13287 91 ACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLGIPVCDGPGGSKLAVCIC 165 (333)
T ss_pred HHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCCCceEECCCCceEEEEEE
Confidence 99999999999988775421249999999999999999999999752 2245789984478999874 59999999
Q ss_pred cCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceee
Q psy12521 157 YGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHF 236 (313)
Q Consensus 157 ~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~ 236 (313)
||.+|||++|.++.+|||+|++|++|+.. ..++|....++||+||++|+++||++|.+.. +.+
T Consensus 166 yD~~fPe~~R~~a~~GAeill~~s~~~~~-~~~~w~~~~~arA~en~~~vv~an~~G~~~~----------------~~~ 228 (333)
T PRK13287 166 HDGMFPEMAREAAYKGANVMIRISGYSTQ-VREQWILTNRSNAWQNLMYTASVNLAGYDGV----------------FYY 228 (333)
T ss_pred ecccchHHHHHHHHCCCeEEEECCccCCc-chhHHHHHHHHHHHhCCcEEEEEeccccCCC----------------eee
Confidence 99999999999999999999999999876 4578988899999999999999999997531 568
Q ss_pred eeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCc
Q psy12521 237 YGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGF 279 (313)
Q Consensus 237 ~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~ 279 (313)
.|+|+|+||+|+++++++.+++++++++||++.++..|..+++
T Consensus 229 ~G~S~Iidp~G~vl~~~~~~~~~ii~aeid~~~~~~~R~~~~~ 271 (333)
T PRK13287 229 FGEGQVCNFDGTTLVQGHRNPWEIVTAEVRPDLADEARLGWGL 271 (333)
T ss_pred eeeeEEECCCCcEEEeCCCCCCeEEEEEEeHHHHHHHHHhcCc
Confidence 8999999999999999987788999999999999999998877
No 33
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=5.4e-42 Score=305.57 Aligned_cols=234 Identities=32% Similarity=0.524 Sum_probs=203.1
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCcccc---ccccccCccccCCCCCcccccCCCccchHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTE---FGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQL 78 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 78 (313)
+|++++.+++++|+++|+|||| |||++++|+....... +.. . .....+ +.|+++
T Consensus 15 ~n~~~~~~~i~~a~~~g~dlvv---fPE~~l~g~~~~~~~~~~~~~~-------~-~~~~~~------------~~l~~~ 71 (253)
T cd07197 15 ANLAKALRLIKEAAEQGADLIV---LPELFLTGYSFESAKEDLDLAE-------E-LDGPTL------------EALAEL 71 (253)
T ss_pred HHHHHHHHHHHHHHHCCCCEEE---cCCccccCCccccchhhhhhcc-------c-CCchHH------------HHHHHH
Confidence 6889999999999999999999 9999999883221111 011 1 123344 999999
Q ss_pred HHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecC
Q psy12521 79 CIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYG 158 (313)
Q Consensus 79 A~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D 158 (313)
|++++++|++|+.++.+ +++||++++++|+|+++..|+|.||++ +.|..+|.+|+. ..+|+++++|+|++||||
T Consensus 72 a~~~~i~ii~G~~~~~~--~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~-~~~f~~~~~~ig~~IC~d 145 (253)
T cd07197 72 AKELGIYIVAGIAEKDG--DKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDE-FPVFDTPGGKIGLLICYD 145 (253)
T ss_pred HHHhCeEEEeeeEEccC--CceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCC-CceEEcCCceEEEEEEec
Confidence 99999999999998776 789999999999999999999999997 478889999996 899999999999999999
Q ss_pred CccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeee
Q psy12521 159 RHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYG 238 (313)
Q Consensus 159 ~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G 238 (313)
++||+.++.+..+|+|+|++|+++.... ..+|..++++||+||++++++||++|... + ..+.|
T Consensus 146 ~~~~~~~~~~~~~g~dli~~ps~~~~~~-~~~~~~~~~~~A~e~~~~vv~~n~~G~~~---------~-------~~~~G 208 (253)
T cd07197 146 LRFPELARELALKGADIILVPAAWPTAR-REHWELLLRARAIENGVYVVAANRVGEEG---------G-------LEFAG 208 (253)
T ss_pred CCCcHHHHHHHHCCCcEEEECCcCCCcc-hHHHHHHHHHHHHHhCCeEEEecCCCCCC---------C-------ccccc
Confidence 9999999999999999999999997753 56888999999999999999999999754 1 46889
Q ss_pred eeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccc
Q psy12521 239 SSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQAS 282 (313)
Q Consensus 239 ~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~ 282 (313)
.|+|++|+|+++++.+.+ ++++++++|++.++..|..++...+
T Consensus 209 ~S~i~~p~G~~~~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~~ 251 (253)
T cd07197 209 GSMIVDPDGEVLAEASEE-EGILVAELDLDELREARKRWSYLRD 251 (253)
T ss_pred eeEEECCCCceeeecCCC-CcEEEEEeCHHHHHHHHhhCCcccc
Confidence 999999999999998867 9999999999999999988755444
No 34
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=1.2e-40 Score=300.50 Aligned_cols=211 Identities=17% Similarity=0.158 Sum_probs=183.7
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
+|++++.+++++|+++|+|||| |||++++++. . .+++.+ +.|+++|++
T Consensus 23 ~nl~~~~~~i~~a~~~ga~lvv---fPE~~l~g~~--------~---------~~~~~~------------~~l~~~ak~ 70 (270)
T cd07571 23 ATLDRYLDLTRELADEKPDLVV---WPETALPFDL--------Q---------RDPDAL------------ARLARAARA 70 (270)
T ss_pred HHHHHHHHHHhhcccCCCCEEE---ecCCcCCccc--------c---------cCHHHH------------HHHHHHHHh
Confidence 5899999999999999999999 9999998871 1 135667 999999999
Q ss_pred cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCC---------------CcccceeCCCCCCCeEEe
Q psy12521 82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDF---------------NESTYYFEGNTGHPVFET 146 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~---------------~E~~~~~~G~~~~~v~~~ 146 (313)
++++|++|+.++....+++||++++|+|+|+++++|+|+||++++++ .|..+|.+|+. +.+|++
T Consensus 71 ~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~-~~vf~~ 149 (270)
T cd07571 71 VGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTG-PQPLLL 149 (270)
T ss_pred cCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCC-CCcccc
Confidence 99999999988765214899999999999999999999999986543 36788999995 899999
Q ss_pred CC-ceEEEEeecCCccchHHHHHHhCCCcEEEEeCCCCC--CC-ChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCc
Q psy12521 147 EF-GRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATIT--GL-SEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFT 222 (313)
Q Consensus 147 ~~-~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~--~~-~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~ 222 (313)
++ +|+|++||||.+|||.++.++++|||+|++|+++.+ .. ...+|..++++||+||+++|++||++
T Consensus 150 ~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~---------- 219 (270)
T cd07571 150 GGGVRVGPLICYESIFPELVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETGRPLVRAANT---------- 219 (270)
T ss_pred CCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHHHHHHHhCCCEEEEcCC----------
Confidence 99 999999999999999999999999999999998432 21 33456677899999999999999853
Q ss_pred CCCCCCCCCcceeeeeeeEEECCCCceeccCCCCCccEEEEEeehhhH
Q psy12521 223 SGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLN 270 (313)
Q Consensus 223 ~~~g~~~~~~~~~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~ 270 (313)
|.|+|+||+|+++++++.++++++++++|++..
T Consensus 220 ---------------G~S~ivdp~G~ii~~~~~~~e~~~~~~i~~~~~ 252 (270)
T cd07571 220 ---------------GISAVIDPDGRIVARLPLFEAGVLVAEVPLRTG 252 (270)
T ss_pred ---------------eeeEEECCCCcEEeecCCCcceEEEEEeccCCC
Confidence 679999999999999987789999999998763
No 35
>KOG0808|consensus
Probab=100.00 E-value=4.1e-40 Score=280.44 Aligned_cols=273 Identities=63% Similarity=1.050 Sum_probs=249.9
Q ss_pred ccHHHHHHhHHhcCCcEEE---ccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 5 FHSPAIANGYFTCAINRVG---SETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 5 ~~~~~~i~~A~~~gadlvv---~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
+|+..+|+.|+..|+.+|+ .|+.|..|++.. ..+|.+++| ++.+||++ ++++++|++
T Consensus 100 ~r~kaiieaaa~agvniiclqeawtmpfafctre-rlpwtefae-------sv~~gptt------------~flqklakk 159 (387)
T KOG0808|consen 100 DRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRE-RLPWTEFAE-------SVDTGPTT------------KFLQKLAKK 159 (387)
T ss_pred HHHHHHHHHHHhcCccEEEeehhhcCchhhhccc-cCchhhhcc-------ccccCchH------------HHHHHHHhh
Confidence 5677899999999999999 677787777765 567888998 55679999 999999999
Q ss_pred cCcEEEeeceeecCCC-CeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCc
Q psy12521 82 YNMVIVSPILERDDVT-DIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRH 160 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~-~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~ 160 (313)
+++.|+..+.|++.+. +-++|++++|+.+|.+++++||.|+|..|.|.|+.||-.|+.+.++|+|.+||||+-|||-.+
T Consensus 160 hdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lghpvfet~fgriavnicygrh 239 (387)
T KOG0808|consen 160 HDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLGHPVFETVFGRIAVNICYGRH 239 (387)
T ss_pred CCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCCCceeeeecceEEEEeeccCC
Confidence 9999999999987542 568999999999999999999999999999999999999998899999999999999999999
Q ss_pred cchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeeeee
Q psy12521 161 HPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSS 240 (313)
Q Consensus 161 ~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G~S 240 (313)
+|.-+..+..+||+||++|++.-.......|-.-++..|+.|.+|+...|++|.+.+|+.+.++||++.+.|+..|+|.|
T Consensus 240 hplnwlmy~lngaeiifnpsatvgalseplwpiearnaaianh~ft~~inrvgtevfpneftsgdgkpah~dfghfygss 319 (387)
T KOG0808|consen 240 HPLNWLMYGLNGAEIIFNPSATVGALSEPLWPIEARNAAIANHYFTGSINRVGTEVFPNEFTSGDGKPAHNDFGHFYGSS 319 (387)
T ss_pred CchhhhhhhccCceEEECCccccccccCccCchhhhhhhhhhceEEEeecccccccCCCcccCCCCCcccccccccccce
Confidence 99999999999999999999987665677899888999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhhhhhcCccc
Q psy12521 241 YITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMSGPTA 297 (313)
Q Consensus 241 ~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~~~~~~~~~ 297 (313)
.+..|++...-.+....++++++++|++.+++.+..|.|.--.|-+.|..++.+-++
T Consensus 320 y~aapd~srtp~lsr~rdgllia~ldlnlcrq~kd~wgfrmt~ryemya~~lae~~k 376 (387)
T KOG0808|consen 320 YFAAPDASRTPSLSRYRDGLLIADLDLNLCRQYKDKWGFRMTARYEMYADLLAEYIK 376 (387)
T ss_pred eeecCCCCCCccccccccceEEeecchHHHHHhhhhhcceehhhHHHHHHHHHHHhC
Confidence 999999999888888899999999999999999999999988899999888765444
No 36
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=9.1e-40 Score=320.92 Aligned_cols=224 Identities=21% Similarity=0.240 Sum_probs=192.2
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
.|++++.+++++|+++|||||| |||++++||...++..... ..+... +.++++|++
T Consensus 17 ~N~~~i~~~i~~A~~~gadLIV---fPEl~ltGy~~~d~~~~~~---------~~~~~~------------~~l~~La~~ 72 (540)
T PRK13981 17 GNAAKILAAAAEAADAGADLLL---FPELFLSGYPPEDLLLRPA---------FLAACE------------AALERLAAA 72 (540)
T ss_pred HHHHHHHHHHHHHHHCCCCEEE---CcchhhcCCChhhhhcCHH---------HHHHHH------------HHHHHHHHh
Confidence 5899999999999999999999 9999999984322110000 001122 677777777
Q ss_pred --cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCC
Q psy12521 82 --YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGR 159 (313)
Q Consensus 82 --~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~ 159 (313)
+++.|++|++++.+ +++||++++|+ +|+++++|+|+||++++.|.|..+|++|+. +.+|+++++|||++||||+
T Consensus 73 ~~~~i~ii~G~~~~~~--~~~yNsa~vi~-~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~-~~~~~~~g~rigv~IC~D~ 148 (540)
T PRK13981 73 TAGGPAVLVGHPWREG--GKLYNAAALLD-GGEVLATYRKQDLPNYGVFDEKRYFAPGPE-PGVVELKGVRIGVPICEDI 148 (540)
T ss_pred cCCCCEEEEeCcEeeC--CcEEEEEEEEE-CCeEEEEEeeeeCCCCCCcCccccccCCCC-ceEEEECCEEEEEEEehhh
Confidence 79999999988766 78999999998 899999999999999888899999999996 8899999999999999999
Q ss_pred ccchHHHHHHhCCCcEEEEeCCCCCCCC-hhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeee
Q psy12521 160 HHPLNWLMFGLNGAEIVFNPSATITGLS-EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYG 238 (313)
Q Consensus 160 ~~pe~~r~~~~~Gadlil~ps~~~~~~~-~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G 238 (313)
+||++++.++++|||+|++|++|++..+ ...|..++++||+||++|+++||++|..+ + ..|.|
T Consensus 149 ~~pe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~~---------~-------~~f~G 212 (540)
T PRK13981 149 WNPEPAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQD---------E-------LVFDG 212 (540)
T ss_pred cCCcHHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccCCC---------c-------eEEeC
Confidence 9999999999999999999999876543 34567789999999999999999999753 1 57999
Q ss_pred eeEEECCCCceeccCCCCCccEEEEEeehhh
Q psy12521 239 SSYITAPNGTRTPGLSRVRDGLLVAELDLNL 269 (313)
Q Consensus 239 ~S~iv~p~G~vla~~~~~~e~vl~a~id~~~ 269 (313)
+|+|+||+|+++++++.++++++++++|+..
T Consensus 213 ~S~i~dp~G~il~~~~~~~e~~l~~did~~~ 243 (540)
T PRK13981 213 ASFVLNADGELAARLPAFEEQIAVVDFDRGE 243 (540)
T ss_pred ceEEECCCCCEeeecCCCCCcEEEEEEeecC
Confidence 9999999999999998889999999999953
No 37
>KOG0806|consensus
Probab=100.00 E-value=6.2e-40 Score=289.29 Aligned_cols=253 Identities=17% Similarity=0.199 Sum_probs=221.8
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCC-CccccccccccCccccCC----CCCcccccCCCccchHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGK-PAHTEFGHFYGSSYITAP----NGTRTPVSRNSSIVTFDYFFP 76 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~ 76 (313)
+|++.++..+++|+++|++||| |||.+++||.. ..+..++| .+. .+|.. +.++
T Consensus 30 ~Ni~~~~~~i~~aa~~g~~iIv---~PE~~~~gy~~~~sf~py~E-------~i~~~~~~~ps~------------~~ls 87 (298)
T KOG0806|consen 30 ENIDILEKAVKEAAKQGAKIIV---FPEDGLYGYNFTESFYPYLE-------DIPDPGCRDPSR------------QGLS 87 (298)
T ss_pred hhHHHHHHHHHHHHhcCCeEEE---Chhhccccccccccccchhh-------hCCCcccCChhH------------HHhH
Confidence 5899999999999999999999 99999999966 55666776 333 24677 9999
Q ss_pred HHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCC--C---CCCcccceeCCCCCCCeEEeCCceE
Q psy12521 77 QLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRV--G---DFNESTYYFEGNTGHPVFETEFGRI 151 (313)
Q Consensus 77 ~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~--~---~~~E~~~~~~G~~~~~v~~~~~~ri 151 (313)
++|++++++++.|.++.....++.||++.+++++|+.+.+|||.||++- + .|.|...|.+|.. +.+++++.|||
T Consensus 88 ~va~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~-f~~~~~~~gkf 166 (298)
T KOG0806|consen 88 EVAERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQ-FTVVDTSYGKF 166 (298)
T ss_pred HHHhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcC-CCcccCCCCce
Confidence 9999999999999887654347999999999999999999999999974 1 1577888999996 99999999999
Q ss_pred EEEeecCCccchHHHHHHhCCCcEEEEeCCCC---CCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCC
Q psy12521 152 AINICYGRHHPLNWLMFGLNGAEIVFNPSATI---TGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKP 228 (313)
Q Consensus 152 g~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~---~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~ 228 (313)
|+.||||++|||+++.+++.||++|+.|++|. ......+|..++++||..|.++|+.++..+... |.
T Consensus 167 Gi~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~~~~l~~~~~hw~~~~~~~a~~n~~~v~~~s~~~~~s---------~~- 236 (298)
T KOG0806|consen 167 GIFICFDIRFYDPAMILVKDGADLIVYPTAWNNELLSAVPLHWALLMRARANDNAANVHAPSPARTGS---------GI- 236 (298)
T ss_pred EEEEEecccccchHHHHHHcCCcEEEecchHhhhcccccchHHHHHHhCCcccceeeeeccCcCcCCc---------ee-
Confidence 99999999999999999999999999999998 555678999999999999999999999887643 21
Q ss_pred CCCcceeeee-eeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhhhhhc
Q psy12521 229 AHTQFGHFYG-SSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMS 293 (313)
Q Consensus 229 ~~~~~~~~~G-~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~~~~~ 293 (313)
+..+| +|.+++|.|++++... .+++++++++|++.+.+.|+.+++.++||+|+|...+.
T Consensus 237 -----y~~~gshs~~~~p~gkvl~a~~-~~~e~~~a~~d~~~~~~~rq~~~~~~~r~~d~y~~~~~ 296 (298)
T KOG0806|consen 237 -----YAPRGSHSIMVNPTGKVLAAAV-EKEEIIYADVDPSAIASRRQGLPVFRQRRLDLYSLDLF 296 (298)
T ss_pred -----eecCCcceeecCCcceEeeecc-CCCccccccCCHHHHHHHhcccchhhccchhhhhhhcc
Confidence 56677 9999999999999887 45559999999999999999999999999999976543
No 38
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=8.9e-39 Score=319.90 Aligned_cols=243 Identities=20% Similarity=0.182 Sum_probs=198.6
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
.|++++.+++++|+++|||||| |||++++||.+.++..-..+. . ...+.+ +.|+++|++
T Consensus 29 ~Nl~~i~~~i~~A~~~gadLvV---fPEL~ltGY~~~dl~~~~~~~-----~-~~~~~l------------~~L~~~a~~ 87 (679)
T PRK02628 29 FNAARILALARRAADDGVALAV---FPELSLSGYSCDDLFLQDTLL-----D-AVEDAL------------ATLVEASAD 87 (679)
T ss_pred HHHHHHHHHHHHHHHCCCeEEE---cccccccCCCcchhhccHHHH-----H-hhHHHH------------HHHHHHHhh
Confidence 5899999999999999999999 999999999543332111100 0 012345 899999999
Q ss_pred cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCC----------------CeEE
Q psy12521 82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGH----------------PVFE 145 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~----------------~v~~ 145 (313)
+++.|++|++++.+ +++||++++|+ +|++++.|+|+||+.++.|.|++||++|+... .+|+
T Consensus 88 ~~i~ivvG~p~~~~--~~lyNsa~vi~-~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~~vf~ 164 (679)
T PRK02628 88 LDPLLVVGAPLRVR--HRLYNCAVVIH-RGRILGVVPKSYLPNYREFYEKRWFAPGDGARGETIRLCGQEVPFGTDLLFE 164 (679)
T ss_pred cCEEEEEeeEEEEC--CEEEEEEEEEc-CCEEEEEeccccCCCCCcccccccccCCCCCCCceEeecCeeeccCCceeEE
Confidence 99999999887766 78999999998 79999999999999888889999999998511 2465
Q ss_pred e---CCceEEEEeecCCccchH-HHHHHhCCCcEEEEeCCCCCCCChhhHH-HHHHHHHHhhCcEEEEEc-cccCCCCCC
Q psy12521 146 T---EFGRIAINICYGRHHPLN-WLMFGLNGAEIVFNPSATITGLSEPLWG-IEARNAAIANGYFTCAIN-RVGSETFPN 219 (313)
Q Consensus 146 ~---~~~rig~~IC~D~~~pe~-~r~~~~~Gadlil~ps~~~~~~~~~~~~-~~~~~rA~en~~~vv~an-~~G~~~~~~ 219 (313)
+ +++|||++||||+||||. .+.++++|||||++|++|+...+..+|+ .+.+++|.+++++++.+| ++|..+
T Consensus 165 ~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~~~--- 241 (679)
T PRK02628 165 AEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGEST--- 241 (679)
T ss_pred ecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEecccccCC---
Confidence 5 689999999999999997 5889999999999999999876666666 567788888876666666 465432
Q ss_pred CCcCCCCCCCCCcceeeeeeeEEECCCCceeccCCCC--CccEEEEEeehhhHHHHHHhcCcccccc
Q psy12521 220 QFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRV--RDGLLVAELDLNLNRQVKDVWGFQASIR 284 (313)
Q Consensus 220 ~~~~~~g~~~~~~~~~~~G~S~iv~p~G~vla~~~~~--~e~vl~a~id~~~~~~~r~~~~~~~~~r 284 (313)
++ ..|.|+|+|++ +|+++++++.+ +++++++++|++.++..|..++++.+++
T Consensus 242 -----~~-------~vf~G~S~I~~-~G~vla~a~~f~~~e~l~~adiDl~~v~~~R~~~~~~~d~~ 295 (679)
T PRK02628 242 -----TD-------LAWDGQTLIYE-NGELLAESERFPREEQLIVADVDLERLRQERLRNGSFDDNA 295 (679)
T ss_pred -----CC-------eEEeCeEEEEc-CCeEEEecCCCCCCCcEEEEEEcHHHHHHHHhhcCCcccch
Confidence 11 57999999998 99999998743 4569999999999999999999988877
No 39
>KOG0805|consensus
Probab=100.00 E-value=5.2e-38 Score=265.73 Aligned_cols=269 Identities=23% Similarity=0.312 Sum_probs=222.3
Q ss_pred ccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCc-------------cccccccccCccccCCCCCcccccCCCccc
Q psy12521 3 EIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPA-------------HTEFGHFYGSSYITAPNGTRTPVSRNSSIV 69 (313)
Q Consensus 3 ~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (313)
.|+|+++++.+|+..||+||| |||.|+.||.... ..++..|+ .+.+.+ ++|.+
T Consensus 35 TL~K~~~~~~Eaa~~Ga~LV~---fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~-a~AIev-~gpEv--------- 100 (337)
T KOG0805|consen 35 TLDKAEKYIVEAASKGAELVL---FPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYH-ASAIEV-PGPEV--------- 100 (337)
T ss_pred HHHHHHHHHHHHhcCCceEEE---eehHhccCCCCcceeeEEEeecchhhhHHHHHHH-HHhhcC-CChHH---------
Confidence 478999999999999999999 9999999983211 12233322 233343 68889
Q ss_pred hHHHHHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCC-CCCeEEeCC
Q psy12521 70 TFDYFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNT-GHPVFETEF 148 (313)
Q Consensus 70 ~~~~~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~-~~~v~~~~~ 148 (313)
++|..+|+++++++++|.+|+++ -.+|.++++|+|+|..+++|||+-.+. .|+..|-.|+. .+++|+|+.
T Consensus 101 ---~~l~~la~~~~v~lv~G~iEreg--~TLYCt~~f~~p~g~~lGKHRKlmPTa----lERciWGqGDGSTiPV~dT~i 171 (337)
T KOG0805|consen 101 ---ERLAELAKKNNVYLVMGAIEREG--YTLYCTVLFFSPQGQFLGKHRKLMPTA----LERCIWGQGDGSTIPVYDTPI 171 (337)
T ss_pred ---HHHHHHhhcCCeEEEEEEEeccc--cEEEEEEEEECCCccccccccccccch----hhheeeccCCCcccceeeccc
Confidence 99999999999999999999998 899999999999999999999995543 89999988773 489999999
Q ss_pred ceEEEEeecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCC-CCCC---CcCC
Q psy12521 149 GRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSET-FPNQ---FTSG 224 (313)
Q Consensus 149 ~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~-~~~~---~~~~ 224 (313)
||||.+||||.+.|.+...+..+|.+|.+.|++. ....|+.-++..|.|.+|||++|++.-... +|.. +...
T Consensus 172 GKIG~AICWEN~MPl~R~alY~KgieIycAPT~D----~r~~w~~sM~~IAlEG~cFvlSA~QF~k~~d~p~~peyl~~~ 247 (337)
T KOG0805|consen 172 GKIGAAICWENRMPLYRTALYAKGIEIYCAPTAD----GRKEWQSSMLHIALEGGCFVLSACQFCKRKDFPDHPDYLFTD 247 (337)
T ss_pred chhceeeecccccHHHHHHHHhcCcEEEeccCCC----CcHHHHHhhhheeecCceEEEEhhhhcccccCCCCchhhccc
Confidence 9999999999999999999999999999999987 457899999999999999999999866532 3311 1122
Q ss_pred CCCCCCCcceeeeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcc-cccchhhhhhhhcCcccc
Q psy12521 225 DGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQ-ASIRELVYIQSMSGPTAK 298 (313)
Q Consensus 225 ~g~~~~~~~~~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~-~~~r~~~y~~~~~~~~~~ 298 (313)
-++...+|.....|+|.|++|.|+|++.....+|+++++|+|+..+...|-.+++. .+.|||.|+.-++++-.+
T Consensus 248 ~~~~k~pD~vv~~GGSviI~PlG~VlagP~~~~EgL~tadldl~dIA~ak~d~DvVGHYsRpDVFqLtVnE~~~~ 322 (337)
T KOG0805|consen 248 WYDDKEPDSVVSQGGSVIISPLGQVLAGPNFESEGLITADLDLGDIARAKLDFDVVGHYSRPDVFQLTVNEHPRK 322 (337)
T ss_pred chhccCCCcceecCCcEEEccccceecCCCcCccceEEEeccchhhhhhccccccccccCCCceEEEEeccCCCC
Confidence 23334455567889999999999999999888999999999999998888777655 689999997766665443
No 40
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=4e-37 Score=279.94 Aligned_cols=205 Identities=17% Similarity=0.148 Sum_probs=156.1
Q ss_pred cccccHHHHHHhHHh----cCCcEEEccCCCCcccCCCCCCcc---ccccccccCccccCCCCCcccccCCCccchHHHH
Q psy12521 2 SEIFHSPAIANGYFT----CAINRVGSETFPNQFTSGDGKPAH---TEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYF 74 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~----~gadlvv~~~fPE~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (313)
.|++++.++|++|++ +|+|||| |||++++||..... ..+++ ...+++.+ +.
T Consensus 16 ~Nl~~~~~~i~~A~~~~~~~gadLIV---fPEl~ltGY~~~~~~~~~~~ae-------~~~~g~~~------------~~ 73 (295)
T cd07566 16 ENLSRAWELLDKTKKRAKLKKPDILV---LPELALTGYNFHSLEHIKPYLE-------PTTSGPSF------------EW 73 (295)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcEEE---cCCCCcccCCcccHHHHHHHHH-------hcCCCHHH------------HH
Confidence 589999999999998 8999999 99999999843221 11222 11246677 99
Q ss_pred HHHHHHHcCcEEEeeceeecCCC-CeEEEEEEEEcCCCcEeeeEeecCCCCCCC---CCcc-ccee------CCCCCCC-
Q psy12521 75 FPQLCIKYNMVIVSPILERDDVT-DIIWNTAVVINNHGRVMGKHRKNHIPRVGD---FNES-TYYF------EGNTGHP- 142 (313)
Q Consensus 75 l~~lA~~~~i~iv~G~~~~~~~~-~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~---~~E~-~~~~------~G~~~~~- 142 (313)
++++|++++++|++|++++..+. +++|||+++|+|+|+++++|||+||++... +.|. .++. +|+....
T Consensus 74 l~~lAk~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~~~e~~~~~~~~~~~~~G~~~~~~ 153 (295)
T cd07566 74 AREVAKKFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWGCEENPGGFQTFPLPFAKDDDFDG 153 (295)
T ss_pred HHHHHHhcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccccCCCCCccccccccccccccccc
Confidence 99999999999999998876411 379999999999999999999999986421 1122 2333 7764222
Q ss_pred eEEeCCceEEEEeecCCc---c--c----hHHHHHHhCCCcEEEEeCCCCCCCCh--------hhH---HHHHHHHHH--
Q psy12521 143 VFETEFGRIAINICYGRH---H--P----LNWLMFGLNGAEIVFNPSATITGLSE--------PLW---GIEARNAAI-- 200 (313)
Q Consensus 143 v~~~~~~rig~~IC~D~~---~--p----e~~r~~~~~Gadlil~ps~~~~~~~~--------~~~---~~~~~~rA~-- 200 (313)
++++.++|||++||||++ | | |++|.++++|||||++|++|+..... .+| ..+.++||+
T Consensus 154 ~~~~~~~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~ 233 (295)
T cd07566 154 GSVDVTLKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPL 233 (295)
T ss_pred cccCCcceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhccc
Confidence 234458899999999996 7 6 99999999999999999999764321 133 233455554
Q ss_pred ----hhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeeeeeEEEC
Q psy12521 201 ----ANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITA 244 (313)
Q Consensus 201 ----en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G~S~iv~ 244 (313)
||++||+.||++|.+. | ..|+|+|+|+.
T Consensus 234 ~a~~eN~~~vv~~Nr~G~~~---------~-------~~f~G~S~i~~ 265 (295)
T cd07566 234 RAEPLEGTQVVFCNRIGTEN---------D-------TLYAGSSAVIG 265 (295)
T ss_pred ccCCCCceEEEEEeccCccC---------C-------ceecCccceee
Confidence 9999999999999864 2 57899999985
No 41
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=2.1e-36 Score=302.31 Aligned_cols=241 Identities=14% Similarity=0.062 Sum_probs=185.6
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
.|+++++++|++|+++|||||| |||+++|||.+.+...-.+ . ..... ..++.|.+.+++
T Consensus 20 ~N~~~I~~~I~~A~~~gAdLvV---fPEL~lTGY~~~Dl~~~~~-------~--~~~~~---------~~L~~La~~a~~ 78 (700)
T PLN02339 20 GNLKRIKESIAEAKAAGAVYRV---GPELEITGYGCEDHFLELD-------T--VTHSW---------ECLAEILVGDLT 78 (700)
T ss_pred HHHHHHHHHHHHHHHCCCCEEE---cCCCccCCCChHHHhhChh-------H--HHHHH---------HHHHHHHhhccc
Confidence 5899999999999999999999 9999999995433211111 0 01112 112444444457
Q ss_pred cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCC---------------------
Q psy12521 82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTG--------------------- 140 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~--------------------- 140 (313)
+++.|++|++++.+ +++||+++++. +|++++.|+|+|||+++.|.|.+||+||+..
T Consensus 79 ~~i~vvvG~p~~~~--~~lYN~a~vi~-~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~v 155 (700)
T PLN02339 79 DGILCDIGMPVIHG--GVRYNCRVFCL-NRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSV 155 (700)
T ss_pred CCeEEEEeeeEEEC--CeEEEEEEEEe-CCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCcee
Confidence 89999999988776 78999999995 8999999999999998889999999998621
Q ss_pred ---CCeEEeCCceEEEEeecCCccchHHHH-HHhCCCcEEEEeCCCCCCCC--hhhHHHHHHHHHHhhCcEEEEEccccC
Q psy12521 141 ---HPVFETEFGRIAINICYGRHHPLNWLM-FGLNGAEIVFNPSATITGLS--EPLWGIEARNAAIANGYFTCAINRVGS 214 (313)
Q Consensus 141 ---~~v~~~~~~rig~~IC~D~~~pe~~r~-~~~~Gadlil~ps~~~~~~~--~~~~~~~~~~rA~en~~~vv~an~~G~ 214 (313)
..+|++++.+||+.||||+|||+..+. ++++|||||++|+++++..+ ..+|+.+....+..+++| ++||++|.
T Consensus 156 pfg~~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~y-vyaN~~Ge 234 (700)
T PLN02339 156 PFGDGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVY-LYANQRGC 234 (700)
T ss_pred ccCcceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcE-EEEcCCcc
Confidence 124456677999999999999998885 99999999999998765432 233445555555666777 68999986
Q ss_pred CCCCCCCcCCCCCCCCCcceeeeeeeEEECCCCceeccCCCC---CccEEEEEeehhhHHHHHHhcCccccc
Q psy12521 215 ETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRV---RDGLLVAELDLNLNRQVKDVWGFQASI 283 (313)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~~~~~~G~S~iv~p~G~vla~~~~~---~e~vl~a~id~~~~~~~r~~~~~~~~~ 283 (313)
++ +. ..|.|+|+|. |+|+++++++.+ ++++++++||++.++..|..++++.++
T Consensus 235 ~~---------~~------lvf~G~S~I~-~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~~ 290 (700)
T PLN02339 235 DG---------GR------LYYDGCACIV-VNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQ 290 (700)
T ss_pred CC---------Cc------eEEcCceEEe-CCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhhh
Confidence 43 11 4677888884 799999998754 467999999999999999888887654
No 42
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=100.00 E-value=2.3e-33 Score=273.76 Aligned_cols=210 Identities=13% Similarity=0.106 Sum_probs=170.9
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
+|++++.+++++ +++|+|+|| |||.+++++ . .+ .+++.. +.++++|++
T Consensus 242 ~~l~~~~~~~~~-~~~~~dlvV---~PE~a~p~~----~---~~---------~~~~~~------------~~l~~~a~~ 289 (505)
T PRK00302 242 ATLQKYLDLSRP-ALGPADLII---WPETAIPFL----L---ED---------LPQAFL------------KALDDLARE 289 (505)
T ss_pred HHHHHHHHHHhc-ccCCCCEEE---eCCcccccc----c---cc---------ccHHHH------------HHHHHHHHh
Confidence 467788888884 467999999 999876543 0 11 122344 899999999
Q ss_pred cCcEEEeeceeecCC-CC-eEEEEEEEEcCCCcEeeeEeecCCCCCCCCC---------------cccceeCCCCCCCeE
Q psy12521 82 YNMVIVSPILERDDV-TD-IIWNTAVVINNHGRVMGKHRKNHIPRVGDFN---------------ESTYYFEGNTGHPVF 144 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~-~~-~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~---------------E~~~~~~G~~~~~v~ 144 (313)
+++.+++|..++.++ ++ ++|||+++++| |+++.+|+|+||+|++++. +...|.+|+....++
T Consensus 290 ~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~~~~~v~ 368 (505)
T PRK00302 290 KGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGPYVQPPL 368 (505)
T ss_pred CCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCCCCCCCc
Confidence 999999998866431 13 69999999998 7799999999999986541 112688998447899
Q ss_pred EeCCceEEEEeecCCccchHHHHHHhCCCcEEEEeCCC--CCCC-ChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCC
Q psy12521 145 ETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSAT--ITGL-SEPLWGIEARNAAIANGYFTCAINRVGSETFPNQF 221 (313)
Q Consensus 145 ~~~~~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~--~~~~-~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~ 221 (313)
+++++|+|++||||..|||..|.++++|+|++++|+|+ .... ...+|..++++||+||++++++||+.
T Consensus 369 ~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~~~RAiEng~~vvra~n~--------- 439 (505)
T PRK00302 369 LAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMARMRALELGRPLIRATNT--------- 439 (505)
T ss_pred ccCCceEEEEEeehhcChHHHHhhccCCCCEEEEccchhhcCCCCchHHHHHHHHHHHHHhCCceEEecCc---------
Confidence 99999999999999999999999999999999999994 3222 23466678899999999999999753
Q ss_pred cCCCCCCCCCcceeeeeeeEEECCCCceeccCCCCCccEEEEEeehhh
Q psy12521 222 TSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNL 269 (313)
Q Consensus 222 ~~~~g~~~~~~~~~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~ 269 (313)
|.|+++||+|+++++.+.++++++++++++..
T Consensus 440 ----------------G~Saiidp~G~i~~~~~~~~~~~l~~~i~~~~ 471 (505)
T PRK00302 440 ----------------GITAVIDPLGRIIAQLPQFTEGVLDGTVPPTT 471 (505)
T ss_pred ----------------eeeEEECCCCCEeeecCCCceeEEEEEeccCC
Confidence 67999999999999998889999999998753
No 43
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=100.00 E-value=4.5e-33 Score=263.71 Aligned_cols=190 Identities=18% Similarity=0.147 Sum_probs=157.1
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
+|++++.+++++|++ |+|||| |||.+++++ ..+ .+++.. +.++++|++
T Consensus 182 ~~~~~~~~~~~~a~~-~~dlVv---~PE~a~~~~-------~~~---------~~~~~~------------~~l~~~a~~ 229 (391)
T TIGR00546 182 AILEILTSLTKQAVE-KPDLVV---WPETAFPFD-------LEN---------SPQKLA------------DRLKLLVLS 229 (391)
T ss_pred HHHHHHHHHHhccCC-CCCEEE---cCccccccc-------hhh---------CcHHHH------------HHHHHHHHh
Confidence 477888899999877 999999 999988765 111 012234 899999999
Q ss_pred cCcEEEeeceeecCC-CCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCc----------------ccceeCCCCCCCeE
Q psy12521 82 YNMVIVSPILERDDV-TDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNE----------------STYYFEGNTGHPVF 144 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~-~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E----------------~~~~~~G~~~~~v~ 144 (313)
+++.|++|..+..++ ..++|||+++++|+|+++.+|+|+||+|++++-. ...|.+|++ +.++
T Consensus 230 ~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~ 308 (391)
T TIGR00546 230 KGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGPG-PQVL 308 (391)
T ss_pred CCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCCC-CCCC
Confidence 999999998866541 1279999999999999999999999999865321 246889985 8999
Q ss_pred EeCCceEEEEeecCCccchHHHHHHhCCCcEEEEeCCCCC--C-CChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCC
Q psy12521 145 ETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATIT--G-LSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQF 221 (313)
Q Consensus 145 ~~~~~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~--~-~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~ 221 (313)
+++++|+|++||||..|||+.|.++++|||++++|+|+.+ . ....+|..++++||+||++++++||++
T Consensus 309 ~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~~~~RAiEn~~~vvra~n~--------- 379 (391)
T TIGR00546 309 KLPGGKIAPLICYESIFPDLVRASARQGAELLVNLTNDAWFGDSSGPWQHFALARFRAIENGRPLVRATNT--------- 379 (391)
T ss_pred cCCCceeeeeEEeehhchHHHHhhccCCCCEEEEecchhhcCCCCChHHHHHHHHHHHHHhCCcEEEecCC---------
Confidence 9999999999999999999999999999999999999543 2 134566788899999999999999864
Q ss_pred cCCCCCCCCCcceeeeeeeEEECCCCce
Q psy12521 222 TSGDGKPAHTQFGHFYGSSYITAPNGTR 249 (313)
Q Consensus 222 ~~~~g~~~~~~~~~~~G~S~iv~p~G~v 249 (313)
|.|+++||+|++
T Consensus 380 ----------------G~S~vidp~G~i 391 (391)
T TIGR00546 380 ----------------GISAVIDPRGRT 391 (391)
T ss_pred ----------------ceeEEECCCCCC
Confidence 679999999985
No 44
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.97 E-value=2.2e-30 Score=220.50 Aligned_cols=155 Identities=32% Similarity=0.493 Sum_probs=131.3
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCC-----c---cccccccccCccccCCCCCcccccCCCccchHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKP-----A---HTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDY 73 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (313)
+|++++.+++++|+++|+|||| |||++++++... . ...+++ .. .++.+ +
T Consensus 18 ~n~~~i~~~~~~a~~~~~dlvv---~PE~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~------------~ 74 (186)
T PF00795_consen 18 ENLKKILSLIEEAARQGADLVV---FPEMALPGYPNPGWCEDDFADLDEFAE-------PL-DGPYL------------E 74 (186)
T ss_dssp HHHHHHHHHHHHHHHTTESEEE---EETTTTTCS-GGGSGHSSHHHHHHHHB-------HS-TSHHH------------H
T ss_pred HHHHHHHHHHHHHHHCCCCEEE---cCcchhcccccccccccccchhhhhcc-------cc-ccHHH------------H
Confidence 4789999999999999999999 999999987210 0 011111 11 23444 9
Q ss_pred HHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCC-cccceeCCCCCCCeEEeC-----
Q psy12521 74 FFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFN-ESTYYFEGNTGHPVFETE----- 147 (313)
Q Consensus 74 ~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~-E~~~~~~G~~~~~v~~~~----- 147 (313)
.|+++|+++++++++|+.++++ +++||++++|+|+|+++++|+|+||+|++++. |+.+|.+|+....+|+++
T Consensus 75 ~l~~~a~~~~~~i~~G~~~~~~--~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~~~~~~~~~~~~ 152 (186)
T PF00795_consen 75 RLAELAKENGITIVAGIPERDD--GGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPFPVFETPVFDFG 152 (186)
T ss_dssp HHHHHHHHHTSEEEEEEEEEET--TEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSESEEEEETETEET
T ss_pred HHHHHHHhcCCccccccccccc--ccccceeEEEEeeecccccccceeeeccccccccceeeeeccceeeeeecceeeec
Confidence 9999999999999999999877 89999999999999999999999999998888 999999985446677775
Q ss_pred CceEEEEeecCCccchHHHHHHhCCCcEEEEeCC
Q psy12521 148 FGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSA 181 (313)
Q Consensus 148 ~~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~ 181 (313)
++|||++||||.+||++++.++++|||++++|+|
T Consensus 153 g~~ig~~ICyd~~fp~~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 153 GGRIGVLICYDLRFPELVRELAKQGADILINPSA 186 (186)
T ss_dssp TEEEEEEEGGGGGSHHHHHHHHHTTESEEEEEE-
T ss_pred cceEEEEEEcccCChHHHHHHHHCCCCEEEeCCC
Confidence 6999999999999999999999999999999986
No 45
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.95 E-value=8.8e-28 Score=228.07 Aligned_cols=177 Identities=15% Similarity=0.131 Sum_probs=143.1
Q ss_pred cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521 2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK 81 (313)
Q Consensus 2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 81 (313)
+++++..+++++|+++|+|+|| |||.+.+.+ ..+ ..+.+ +.+++.+
T Consensus 217 ~~l~~~~~l~~~a~~~~~dLVV---wPEta~p~~-------~~~----------~~~~~------------~~l~~~~-- 262 (418)
T PRK12291 217 SIINENLKEIDKAIDEKKDLIV---LPETAFPLA-------LNN----------SPILL------------DKLKELS-- 262 (418)
T ss_pred HHHHHHHHHHHHHhccCCCEEE---eCCcccccc-------hhh----------CHHHH------------HHHHHhc--
Confidence 4678889999999999999999 999875533 111 12234 7777764
Q ss_pred cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCC----------------CcccceeCCCCCCCeEE
Q psy12521 82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDF----------------NESTYYFEGNTGHPVFE 145 (313)
Q Consensus 82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~----------------~E~~~~~~G~~~~~v~~ 145 (313)
.++.+++|....++ +++|||++++++ |+ +..|+|+||+|++++ .|...|++|+. ..+++
T Consensus 263 ~~~~ii~G~~~~~~--~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~-~~~~~ 337 (418)
T PRK12291 263 HKITIITGALRVED--GHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASK-FSDFT 337 (418)
T ss_pred cCCcEEEeeeeccC--CceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCC-Cccee
Confidence 57899999887665 689999999985 87 789999999998752 35567899985 89999
Q ss_pred eCCceEEEEeecCCccchHHHHHHhCCCcEEEEeCCCCC--CC-ChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCc
Q psy12521 146 TEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATIT--GL-SEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFT 222 (313)
Q Consensus 146 ~~~~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~--~~-~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~ 222 (313)
+++.|+|++||||.+|||..| +|+|++++++|+.+ .. +..+|+.++++||+|||++++++.+.
T Consensus 338 ~~g~~ig~lICYE~~Fpel~r----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RAiE~g~pvvratNt---------- 403 (418)
T PRK12291 338 LDGVKFRNAICYEATSEELYE----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYARKYGKTIYHSANG---------- 403 (418)
T ss_pred eCCeEEEEEEeeeecchHhhc----cCCCEEEEecccccCCCChhHHHHHHHHHHHHHHhCCcEEEEcCC----------
Confidence 999999999999999999887 89999999999554 22 23467788899999999999999753
Q ss_pred CCCCCCCCCcceeeeeeeEEECCC
Q psy12521 223 SGDGKPAHTQFGHFYGSSYITAPN 246 (313)
Q Consensus 223 ~~~g~~~~~~~~~~~G~S~iv~p~ 246 (313)
|.|+++||+
T Consensus 404 ---------------GiSavIdp~ 412 (418)
T PRK12291 404 ---------------SPSYIITPK 412 (418)
T ss_pred ---------------ceeEEECcc
Confidence 669999985
No 46
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=9.2e-26 Score=218.32 Aligned_cols=196 Identities=19% Similarity=0.152 Sum_probs=154.2
Q ss_pred hcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHHcCcEEEeeceeecC
Q psy12521 16 TCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKYNMVIVSPILERDD 95 (313)
Q Consensus 16 ~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~G~~~~~~ 95 (313)
.+++|+|| +||.+++-. .+ + ..... ..+.+.+.+.++.+++|...+.+
T Consensus 266 ~~~~dlVI---wPEtA~p~~--------~~-------~--~~~~~------------~~~~~~~~~~~~~~iiG~~~~~~ 313 (518)
T COG0815 266 KQKPDLVV---WPETALPFD--------LT-------R--HPDAL------------ARLAEALQRVGAPLLIGTDVDGP 313 (518)
T ss_pred CCCCCEEE---ccccccccc--------hh-------h--cchHH------------HHHHHHHHhcCCcEEEecccccc
Confidence 48999999 999976422 01 1 11124 67888888889999999443221
Q ss_pred CCC--eEEEEEEEEcCCCcEeeeEeecCCCCCCCC---------------CcccceeCCCCCCCeEEeCCc-eEEEEeec
Q psy12521 96 VTD--IIWNTAVVINNHGRVMGKHRKNHIPRVGDF---------------NESTYYFEGNTGHPVFETEFG-RIAINICY 157 (313)
Q Consensus 96 ~~~--~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~---------------~E~~~~~~G~~~~~v~~~~~~-rig~~IC~ 157 (313)
.++ .+|||+++++++|+++.+|+|+||.|||++ .....|.+|+. ..++.++.+ |++++|||
T Consensus 314 ~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f~~G~~-~~v~~~~~~~~~~~~ICY 392 (518)
T COG0815 314 APGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDFSRGPG-PQVLLLAGGPKIAPLICY 392 (518)
T ss_pred CCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccccccCCCC-CcceecCCCceeeceeee
Confidence 113 589999999999999999999999999865 11234566885 677777665 69999999
Q ss_pred CCccchHHHHHHhCCCcEEEEeCCCCCC---CChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcce
Q psy12521 158 GRHHPLNWLMFGLNGAEIVFNPSATITG---LSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFG 234 (313)
Q Consensus 158 D~~~pe~~r~~~~~Gadlil~ps~~~~~---~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~ 234 (313)
|..||+..|...++|+|+++++||+.+. .+..++..+++.||+|++.++++|.+.
T Consensus 393 E~~F~~~~r~~~~qga~~Lin~SNDAWf~~s~~p~QH~~~a~~RAiE~grp~iRAtNt---------------------- 450 (518)
T COG0815 393 EAIFPELVRASARQGAELLLNLSNDAWFGGSWGPYQHFQQARVRAVELGRPLVRATNT---------------------- 450 (518)
T ss_pred hhhchHHHHHhhcCCCcEEEEcccccccCCCcchHHHHHHHHHHHHhcCCcEEEEcCC----------------------
Confidence 9999999999999999999999996442 233455567799999999999999654
Q ss_pred eeeeeeEEECCCCceeccCCCCCccEEEEEeehhh
Q psy12521 235 HFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNL 269 (313)
Q Consensus 235 ~~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~ 269 (313)
|.|+||||+|++++..+.++.+++.+++.+..
T Consensus 451 ---GiSavIdp~Gri~~~l~~~~~~~l~~~v~~~~ 482 (518)
T COG0815 451 ---GISAVIDPRGRILAQLPYFTRGVLDATVPLKT 482 (518)
T ss_pred ---cceEEECCCCCEEeecCCCCcceeeeeecccC
Confidence 66999999999999999999999999987654
No 47
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.91 E-value=2.5e-23 Score=195.07 Aligned_cols=167 Identities=15% Similarity=0.011 Sum_probs=129.3
Q ss_pred ccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHHcCc
Q psy12521 5 FHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKYNM 84 (313)
Q Consensus 5 ~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 84 (313)
....+.+++|.++|+|+|| +||.+++++.. . .- +.+++.++++++
T Consensus 209 ~~~~~~v~~A~~~g~dlIV---lPEta~~~~~~-------~-------------~~------------~~~~~~l~~~~i 253 (388)
T PRK13825 209 RELIATVRAAAAAGARVVV---LPESALGFWTP-------T-------------TE------------RLWRESLRGSDV 253 (388)
T ss_pred HHHHHHHHhhcccCCCEEE---ccCcccccccc-------c-------------cc------------HHHHHHHHhCCC
Confidence 3456778888999999999 99998876510 0 01 234556689999
Q ss_pred EEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCC-------CcccceeCCCCCCCeEEeCCceEEEEeec
Q psy12521 85 VIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDF-------NESTYYFEGNTGHPVFETEFGRIAINICY 157 (313)
Q Consensus 85 ~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~-------~E~~~~~~G~~~~~v~~~~~~rig~~IC~ 157 (313)
.|++|..++++ +++||++++++++|. ...|+|+||+|++++ .|..++.+|..+..+|++++.|+|++|||
T Consensus 254 ~II~G~~~~~~--~~~yNsa~v~~~~G~-~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~lICY 330 (388)
T PRK13825 254 TVIAGAAVVDP--GGYDNVLVAISAGGG-RILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAPLICY 330 (388)
T ss_pred eEEEEeeecCC--CCceEEEEEEeCCCC-eeeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEEEEee
Confidence 99999887765 789999999999986 459999999987642 26667777742346899999999999999
Q ss_pred CCcc--chHHHHHHhCCCcEEEEeCCCCCC--CC-hhhHHHHHHHHHHhhCcEEEEEcc
Q psy12521 158 GRHH--PLNWLMFGLNGAEIVFNPSATITG--LS-EPLWGIEARNAAIANGYFTCAINR 211 (313)
Q Consensus 158 D~~~--pe~~r~~~~~Gadlil~ps~~~~~--~~-~~~~~~~~~~rA~en~~~vv~an~ 211 (313)
|..| |+..+. .+|+|+|++|+|+.+. .. ..+.+.+.++||+|++.++++|.+
T Consensus 331 E~~F~~pel~~~--~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~N 387 (388)
T PRK13825 331 EQLLVWPVLQSM--LHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAFN 387 (388)
T ss_pred eecCcHHHHHhh--ccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 9988 665443 7999999999995432 22 234557889999999999999864
No 48
>KOG2303|consensus
Probab=99.61 E-value=1.5e-15 Score=140.68 Aligned_cols=232 Identities=16% Similarity=0.133 Sum_probs=168.3
Q ss_pred CcccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHH
Q psy12521 1 RSEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCI 80 (313)
Q Consensus 1 ~~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 80 (313)
+.|.+|+.+-|++|++.||.+-+ -||+-.+||++.+.+ .| .+..+ .-+ +.|.++..
T Consensus 20 egN~~rI~~Si~eAk~~gA~~Rl---GPELEi~GYgC~DHf--~E----------~Dt~~------Hsw---E~l~~l~~ 75 (706)
T KOG2303|consen 20 EGNMQRILKSIEEAKARGARYRL---GPELEITGYGCEDHF--LE----------SDTLL------HSW---EMLAELVE 75 (706)
T ss_pred cccHHHHHHHHHHHHhcCCeeec---CCceeecCCChHHhh--cc----------chHHH------HHH---HHHHHHHc
Confidence 46899999999999999999999 999999999875542 22 01111 111 44444443
Q ss_pred H---cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCC---------------
Q psy12521 81 K---YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHP--------------- 142 (313)
Q Consensus 81 ~---~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~--------------- 142 (313)
. .++.+.+|++.... +-.||+.+++- ||+|+...-|+-|.+-+.|.|.+||+|..+ ..
T Consensus 76 ~~~~~~il~diGmPv~hr--~~ryNCrv~~~-n~kil~IRpKm~lanDgnyRE~RwFt~W~~-~~~~e~y~lP~~i~~~~ 151 (706)
T KOG2303|consen 76 SPVTQDILCDIGMPVMHR--NVRYNCRVLFL-NRKILLIRPKMWLANDGNYRESRWFTPWTR-PRVTEEYQLPRMIQKHT 151 (706)
T ss_pred CCCCCCeeEecCCchhhh--hhhhccceeec-CCeEEEEcccceeccCCCchhhcccccccc-ccccceeeccHHHHHHh
Confidence 2 46788899998887 78899999985 999999999999999999999999998664 21
Q ss_pred ----------eEEeCCceEEEEeecCCccchHH-HHHHhCCCcEEEEeCCCCCCCChhhH--HHHHHHHHHhhCcEEEEE
Q psy12521 143 ----------VFETEFGRIAINICYGRHHPLNW-LMFGLNGAEIVFNPSATITGLSEPLW--GIEARNAAIANGYFTCAI 209 (313)
Q Consensus 143 ----------v~~~~~~rig~~IC~D~~~pe~~-r~~~~~Gadlil~ps~~~~~~~~~~~--~~~~~~rA~en~~~vv~a 209 (313)
++++..--||.-||.|+|.|..- -.+++.|++|+++.+.......+... ..+.-+-+...|+| +++
T Consensus 152 ~Q~tVPfGdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvY-lya 230 (706)
T KOG2303|consen 152 GQETVPFGDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVY-LYA 230 (706)
T ss_pred CCeeecccceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEE-Eee
Confidence 22222335899999999988743 45778999999998765332111111 12222334444444 778
Q ss_pred ccccCCCCCCCCcCCCCCCCCCcceeeeeeeEEECCCCceeccCCC---CCccEEEEEeehhhHHHHHHhc
Q psy12521 210 NRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSR---VRDGLLVAELDLNLNRQVKDVW 277 (313)
Q Consensus 210 n~~G~~~~~~~~~~~~g~~~~~~~~~~~G~S~iv~p~G~vla~~~~---~~e~vl~a~id~~~~~~~r~~~ 277 (313)
|+-|.++ ++ .-|.|+|+|+ -+|.++|+... .+-+++.|.||++.++.+|...
T Consensus 231 NqrGCDG---------~R------lYydGca~Ia-~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~ 285 (706)
T KOG2303|consen 231 NQRGCDG---------DR------LYYDGCAMIA-MNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASI 285 (706)
T ss_pred ccCCCCC---------ce------eEecchhhee-ecceeeeecccccccceEEEEEEecHHHHHHHHhhh
Confidence 9988864 22 4577888776 59999999765 3577999999999999999644
No 49
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=83.27 E-value=7.8 Score=34.01 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=42.0
Q ss_pred hHHHHHHhCCCcEEEEeCCCCCCCC------------hhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCC
Q psy12521 163 LNWLMFGLNGAEIVFNPSATITGLS------------EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAH 230 (313)
Q Consensus 163 e~~r~~~~~Gadlil~ps~~~~~~~------------~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~ 230 (313)
++.+.+..+|+|+++.|-.+..... ...+...++..|.+++++++.--.. .. ++
T Consensus 23 ~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~-~~---------~~---- 88 (254)
T cd07576 23 EAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVVGYPE-RA---------GG---- 88 (254)
T ss_pred HHHHHHHHcCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEEeccc-cC---------CC----
Confidence 3556667899999999976532111 1123344556788999988775211 10 11
Q ss_pred CcceeeeeeeEEECCCCcee
Q psy12521 231 TQFGHFYGSSYITAPNGTRT 250 (313)
Q Consensus 231 ~~~~~~~G~S~iv~p~G~vl 250 (313)
..+-...+++|+|+++
T Consensus 89 ----~~yNs~~~i~~~G~i~ 104 (254)
T cd07576 89 ----AVYNAAVLIDEDGTVL 104 (254)
T ss_pred ----ceEEEEEEECCCCCEe
Confidence 2334566789999865
No 50
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=83.20 E-value=6.5 Score=34.58 Aligned_cols=72 Identities=18% Similarity=0.121 Sum_probs=43.1
Q ss_pred hHHHHHHhCCCcEEEEeCCCCCC--CCh-----------hhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCC
Q psy12521 163 LNWLMFGLNGAEIVFNPSATITG--LSE-----------PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPA 229 (313)
Q Consensus 163 e~~r~~~~~Gadlil~ps~~~~~--~~~-----------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~ 229 (313)
+..+.++.+|+|+|+.|-.+... ... ..|...++..|.+++++++.--. -... +|
T Consensus 21 ~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~~--------~~--- 88 (255)
T cd07581 21 RLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAGMF-EPAG--------DG--- 88 (255)
T ss_pred HHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEee-eeCC--------CC---
Confidence 35566678999999998664321 111 12344456678899998887421 1100 11
Q ss_pred CCcceeeeeeeEEECCCCceec
Q psy12521 230 HTQFGHFYGSSYITAPNGTRTP 251 (313)
Q Consensus 230 ~~~~~~~~G~S~iv~p~G~vla 251 (313)
..+=.+.+++|+|+++.
T Consensus 89 -----~~yNs~~~i~~~G~i~~ 105 (255)
T cd07581 89 -----RVYNTLVVVGPDGEIIA 105 (255)
T ss_pred -----cEEEeEEEECCCCcEEE
Confidence 23445777889998653
No 51
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=82.70 E-value=7 Score=35.50 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCcEEEee-ceeecCCCCeEEEEEEEEcCCCcEeee
Q psy12521 73 YFFPQLCIKYNMVIVSP-ILERDDVTDIIWNTAVVINNHGRVMGK 116 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G-~~~~~~~~~~~yNs~~vi~~~G~i~~~ 116 (313)
..++.-|.+++++++.- ..-..+ ...++=.+.+++|+|+++..
T Consensus 189 ~~~~aRA~En~~~vv~aN~~G~~~-~~~~~G~S~ivdP~G~ila~ 232 (291)
T cd07565 189 ITNKANAWCNLMYTASVNLAGFDG-VFSYFGESMIVNFDGRTLGE 232 (291)
T ss_pred HHHHHHHHhcCcEEEEecccccCC-CceeeeeeEEECCCCCEEEe
Confidence 55678888999998832 211111 12455567788999997644
No 52
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=82.28 E-value=7.3 Score=35.04 Aligned_cols=70 Identities=14% Similarity=0.013 Sum_probs=40.9
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCC--C--------------hhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCC
Q psy12521 164 NWLMFGLNGAEIVFNPSATITGL--S--------------EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGK 227 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~~~--~--------------~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~ 227 (313)
+.+.++.+|||+|+.|-.+..+. . ...+...++..|.+++++++.. ..-... +|
T Consensus 35 ~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~g-~~~~~~--------~~- 104 (287)
T cd07568 35 MIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLILP-IYEKEQ--------GG- 104 (287)
T ss_pred HHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEEEE-eEEEcC--------CC-
Confidence 44556678999999987532111 0 0112334567789999999862 111000 11
Q ss_pred CCCCcceeeeeeeEEECCCCcee
Q psy12521 228 PAHTQFGHFYGSSYITAPNGTRT 250 (313)
Q Consensus 228 ~~~~~~~~~~G~S~iv~p~G~vl 250 (313)
.++-.+++++|+|+++
T Consensus 105 -------~~yNs~~~i~~~G~i~ 120 (287)
T cd07568 105 -------TLYNTAAVIDADGTYL 120 (287)
T ss_pred -------cEEEEEEEECCCCcEe
Confidence 2344577889999875
No 53
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=81.48 E-value=8.6 Score=34.30 Aligned_cols=70 Identities=13% Similarity=0.025 Sum_probs=40.7
Q ss_pred hHHHHHHhCCCcEEEEeCCCCCCC--C--h------------hhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCC
Q psy12521 163 LNWLMFGLNGAEIVFNPSATITGL--S--E------------PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDG 226 (313)
Q Consensus 163 e~~r~~~~~Gadlil~ps~~~~~~--~--~------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g 226 (313)
++.+.++.+|||||+.|-.+.... . . ..+...++..|.+++++++..- . ... ++
T Consensus 23 ~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~~g~-~-~~~--------~~ 92 (279)
T TIGR03381 23 RLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGVVIPVSF-F-EKA--------GN 92 (279)
T ss_pred HHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCcEEEEee-e-ecC--------CC
Confidence 355666778999999997532111 0 0 1233345667889999887531 1 110 11
Q ss_pred CCCCCcceeeeeeeEEECCCCcee
Q psy12521 227 KPAHTQFGHFYGSSYITAPNGTRT 250 (313)
Q Consensus 227 ~~~~~~~~~~~G~S~iv~p~G~vl 250 (313)
.++-..++++|+|+++
T Consensus 93 --------~~yNs~~~i~~~G~i~ 108 (279)
T TIGR03381 93 --------AYYNSLAMIDADGSVL 108 (279)
T ss_pred --------ceEEeEEEECCCCCEE
Confidence 2334466789999875
No 54
>PLN02747 N-carbamolyputrescine amidase
Probab=81.34 E-value=8 Score=35.02 Aligned_cols=70 Identities=14% Similarity=-0.050 Sum_probs=40.4
Q ss_pred hHHHHHHhCCCcEEEEeCCCCCCCC----------------hhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCC
Q psy12521 163 LNWLMFGLNGAEIVFNPSATITGLS----------------EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDG 226 (313)
Q Consensus 163 e~~r~~~~~Gadlil~ps~~~~~~~----------------~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g 226 (313)
++.+.++..|||||+.|-.+..... ...+...+..-|.+++++++..- .... ++
T Consensus 29 ~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~-~~~~---------~~ 98 (296)
T PLN02747 29 RLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSF-FEEA---------NN 98 (296)
T ss_pred HHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEeee-eecC---------CC
Confidence 3556667789999999876422110 01122334567888999887532 1111 12
Q ss_pred CCCCCcceeeeeeeEEECCCCcee
Q psy12521 227 KPAHTQFGHFYGSSYITAPNGTRT 250 (313)
Q Consensus 227 ~~~~~~~~~~~G~S~iv~p~G~vl 250 (313)
..+-...+++|+|+++
T Consensus 99 --------~~yNs~~~i~~~G~i~ 114 (296)
T PLN02747 99 --------AHYNSIAIIDADGTDL 114 (296)
T ss_pred --------ceEEEEEEECCCCCCc
Confidence 2334456788999875
No 55
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=80.83 E-value=9.4 Score=31.60 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=43.7
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCC--------Ch-----------hhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCC
Q psy12521 164 NWLMFGLNGAEIVFNPSATITGL--------SE-----------PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSG 224 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~~~--------~~-----------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~ 224 (313)
+.+.+..+|+|+|+.|-.+.... .. ..+...+...|.+++++++.-...- +.
T Consensus 26 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~~~-~~-------- 96 (186)
T PF00795_consen 26 LIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIPER-DD-------- 96 (186)
T ss_dssp HHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEEEE-ET--------
T ss_pred HHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccccccc-cc--------
Confidence 33555678999999997754422 00 1233345667889999988763221 11
Q ss_pred CCCCCCCcceeeeeeeEEECCCCcee
Q psy12521 225 DGKPAHTQFGHFYGSSYITAPNGTRT 250 (313)
Q Consensus 225 ~g~~~~~~~~~~~G~S~iv~p~G~vl 250 (313)
+ .++-...+++|+|+++
T Consensus 97 -~--------~~~N~~~~~~~~g~~~ 113 (186)
T PF00795_consen 97 -G--------GLYNSAVVIDPDGEIL 113 (186)
T ss_dssp -T--------EEEEEEEEEETTSEEE
T ss_pred -c--------cccceeEEEEeeeccc
Confidence 1 3455677889999887
No 56
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=80.41 E-value=10 Score=34.35 Aligned_cols=72 Identities=24% Similarity=0.288 Sum_probs=42.4
Q ss_pred hHHHHHHhCCCcEEEEeCCCCCCCC-----------hhhH--------------HHHHHHHHHhhCcEEEEEccccCCCC
Q psy12521 163 LNWLMFGLNGAEIVFNPSATITGLS-----------EPLW--------------GIEARNAAIANGYFTCAINRVGSETF 217 (313)
Q Consensus 163 e~~r~~~~~Gadlil~ps~~~~~~~-----------~~~~--------------~~~~~~rA~en~~~vv~an~~G~~~~ 217 (313)
++.+.++.+|+|+|+.|-.+..... .+.| ...++..|.+++++++..... ..
T Consensus 24 ~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~-- 100 (297)
T cd07564 24 RLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELERLAEAARENGIYVVLGVSE-RD-- 100 (297)
T ss_pred HHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEeeEe-cc--
Confidence 3556667899999999976532111 1111 122345678899998865321 11
Q ss_pred CCCCcCCCCCCCCCcceeeeeeeEEECCCCceecc
Q psy12521 218 PNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPG 252 (313)
Q Consensus 218 ~~~~~~~~g~~~~~~~~~~~G~S~iv~p~G~vla~ 252 (313)
++ ..+-.+.+++|+|+++..
T Consensus 101 -------~~--------~~yNs~~vi~~~G~i~~~ 120 (297)
T cd07564 101 -------GG--------TLYNTQLLIDPDGELLGK 120 (297)
T ss_pred -------CC--------ceEEEEEEEcCCCCEeee
Confidence 11 234556788999987643
No 57
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=78.82 E-value=13 Score=32.70 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=41.0
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCC-Ch----------hhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCc
Q psy12521 164 NWLMFGLNGAEIVFNPSATITGL-SE----------PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQ 232 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~~~-~~----------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~ 232 (313)
+......+|+|+|+.|-.+.... .. ..+...++..|.+++++++.-...-.. ++
T Consensus 24 ~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~---------~~------ 88 (253)
T cd07583 24 LIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVAGSVAEKE---------GG------ 88 (253)
T ss_pred HHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEeceEEecC---------CC------
Confidence 44555678999999997643211 11 123334556788889988853211000 11
Q ss_pred ceeeeeeeEEECCCCceec
Q psy12521 233 FGHFYGSSYITAPNGTRTP 251 (313)
Q Consensus 233 ~~~~~G~S~iv~p~G~vla 251 (313)
.++-.+.+++|+|+++.
T Consensus 89 --~~yNs~~~i~~~G~i~~ 105 (253)
T cd07583 89 --KLYNTAYVIDPDGELIA 105 (253)
T ss_pred --cEEEEEEEECCCCcEEE
Confidence 23445677899998753
No 58
>PLN02798 nitrilase
Probab=77.61 E-value=13 Score=33.43 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=41.4
Q ss_pred HHHHHHhCCCcEEEEeCCCCC-CCCh-----------hhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCC
Q psy12521 164 NWLMFGLNGAEIVFNPSATIT-GLSE-----------PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHT 231 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~-~~~~-----------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~ 231 (313)
+.+.++.+|+|||+.|-.+.. .... ..+...++..|.+++++++.....-... .++
T Consensus 34 ~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~-------~~~----- 101 (286)
T PLN02798 34 LAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGP-------DDS----- 101 (286)
T ss_pred HHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEEeeeEcccC-------CCC-----
Confidence 345556789999999976321 1111 1233344667889999987421110000 011
Q ss_pred cceeeeeeeEEECCCCceec
Q psy12521 232 QFGHFYGSSYITAPNGTRTP 251 (313)
Q Consensus 232 ~~~~~~G~S~iv~p~G~vla 251 (313)
..+-.+.+++|+|++++
T Consensus 102 ---~~yNs~~vi~~~G~i~~ 118 (286)
T PLN02798 102 ---HLYNTHVLIDDSGEIRS 118 (286)
T ss_pred ---ceEEEEEEECCCCCEEE
Confidence 24455778899998764
No 59
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=75.92 E-value=19 Score=31.69 Aligned_cols=71 Identities=17% Similarity=0.130 Sum_probs=41.3
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCCh---------------hhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCC
Q psy12521 164 NWLMFGLNGAEIVFNPSATITGLSE---------------PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKP 228 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~~~~~---------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~ 228 (313)
..+..+.+|+|+|+.|-.+...... ..+...++..|.+++++++.-...-... +|
T Consensus 24 ~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~--------~~-- 93 (258)
T cd07584 24 LCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAKELGVYIVCGFVEKGGV--------PG-- 93 (258)
T ss_pred HHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHHHcCeEEEEeehcccCC--------CC--
Confidence 3445567899999998764321110 0123345667888998887754211000 01
Q ss_pred CCCcceeeeeeeEEECCCCcee
Q psy12521 229 AHTQFGHFYGSSYITAPNGTRT 250 (313)
Q Consensus 229 ~~~~~~~~~G~S~iv~p~G~vl 250 (313)
.++-..++++|+|+++
T Consensus 94 ------~~~Ns~~~i~~~G~i~ 109 (258)
T cd07584 94 ------KVYNSAVVIDPEGESL 109 (258)
T ss_pred ------ceEEEEEEECCCCCEE
Confidence 2345567889999875
No 60
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=73.79 E-value=20 Score=31.65 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=42.2
Q ss_pred hHHHHHHhCCCcEEEEeCCCCCCCCh-------------hhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCC
Q psy12521 163 LNWLMFGLNGAEIVFNPSATITGLSE-------------PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPA 229 (313)
Q Consensus 163 e~~r~~~~~Gadlil~ps~~~~~~~~-------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~ 229 (313)
++...+..+|+|+|+.|-.+...... ..+...++..|.+++++++.....-... .++
T Consensus 22 ~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~-------~~~--- 91 (265)
T cd07572 22 ELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVGGSIPERDD-------DDG--- 91 (265)
T ss_pred HHHHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEEeeeccccC-------CCC---
Confidence 34555667899999999765322110 1223345667889999887642211100 001
Q ss_pred CCcceeeeeeeEEECCCCcee
Q psy12521 230 HTQFGHFYGSSYITAPNGTRT 250 (313)
Q Consensus 230 ~~~~~~~~G~S~iv~p~G~vl 250 (313)
.++-.+.+++|+|+++
T Consensus 92 -----~~yNs~~~i~~~G~i~ 107 (265)
T cd07572 92 -----KVYNTSLVFDPDGELV 107 (265)
T ss_pred -----cEEEEEEEECCCCeEE
Confidence 2445567889999875
No 61
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=73.53 E-value=21 Score=30.99 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=41.2
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCC--------------hhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCC
Q psy12521 164 NWLMFGLNGAEIVFNPSATITGLS--------------EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPA 229 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~~~~--------------~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~ 229 (313)
..+.+..+|+|+++.|-.+..... ...+...++..|.+++++++.-... .. ++
T Consensus 23 ~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~~-~~---------~~--- 89 (253)
T cd07197 23 LIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYIVAGIAE-KD---------GD--- 89 (253)
T ss_pred HHHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEEEeeeEE-cc---------CC---
Confidence 445566789999999875432110 1233445566788889988764321 00 11
Q ss_pred CCcceeeeeeeEEECCCCcee
Q psy12521 230 HTQFGHFYGSSYITAPNGTRT 250 (313)
Q Consensus 230 ~~~~~~~~G~S~iv~p~G~vl 250 (313)
.++-...+++|+|+++
T Consensus 90 -----~~~N~~~~i~~~G~i~ 105 (253)
T cd07197 90 -----KLYNTAVVIDPDGEII 105 (253)
T ss_pred -----ceEEEEEEECCCCeEE
Confidence 2344567889999854
No 62
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=73.44 E-value=17 Score=34.32 Aligned_cols=73 Identities=7% Similarity=-0.000 Sum_probs=42.4
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCC---h--------------hhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCC
Q psy12521 164 NWLMFGLNGAEIVFNPSATITGLS---E--------------PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDG 226 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~~~~---~--------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g 226 (313)
+.+.++.+|||||+.|-.|..+.. . ..+...++..|.+++++|+.. ..-... ..++
T Consensus 95 ~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~g-i~e~~~------~~~~ 167 (363)
T cd07587 95 IIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVIVSP-ILERDE------EHGD 167 (363)
T ss_pred HHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHHHHHHHHHHcCcEEEEe-eeeeec------CCCC
Confidence 455667789999999876543211 0 012224567789999999742 111100 0001
Q ss_pred CCCCCcceeeeeeeEEECCCCceec
Q psy12521 227 KPAHTQFGHFYGSSYITAPNGTRTP 251 (313)
Q Consensus 227 ~~~~~~~~~~~G~S~iv~p~G~vla 251 (313)
..+-.+.+++|+|+++.
T Consensus 168 --------~~yNta~vi~~~G~ilg 184 (363)
T cd07587 168 --------TIWNTAVVISNSGNVLG 184 (363)
T ss_pred --------cEEEEEEEECCCCCEEe
Confidence 24456788899998863
No 63
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=73.38 E-value=16 Score=34.09 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCcEEEeec-eeecCCCCeEEEEEEEEcCCCcEeee
Q psy12521 73 YFFPQLCIKYNMVIVSPI-LERDDVTDIIWNTAVVINNHGRVMGK 116 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~-~~~~~~~~~~yNs~~vi~~~G~i~~~ 116 (313)
..++..|.+++++++.-. .-.++ .-.++=.+.+++|+|+++..
T Consensus 202 ~~~rarA~eN~~yVv~aN~~G~~~-~~~~~G~S~Ivdp~G~vla~ 245 (345)
T PRK13286 202 LVAKAMAWANNCYVAVANAAGFDG-VYSYFGHSAIIGFDGRTLGE 245 (345)
T ss_pred HHHHHHHHHCCCEEEEEecccccC-CceeeeeEEEECCCCcEEEe
Confidence 556778889999987432 11112 12344567889999997654
No 64
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=72.30 E-value=21 Score=31.94 Aligned_cols=71 Identities=15% Similarity=0.038 Sum_probs=40.8
Q ss_pred hHHHHHHhCCCcEEEEeCCCCCCC--C--------------hhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCC
Q psy12521 163 LNWLMFGLNGAEIVFNPSATITGL--S--------------EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDG 226 (313)
Q Consensus 163 e~~r~~~~~Gadlil~ps~~~~~~--~--------------~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g 226 (313)
+..+.++.+|+|+++.|-.+.... . .+.+...++..|.+++++++... .-... +|
T Consensus 23 ~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i~iv~g~-~~~~~--------~~ 93 (284)
T cd07573 23 ELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGVVIPVSL-FEKRG--------NG 93 (284)
T ss_pred HHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCEEEEecc-eeeCC--------CC
Confidence 455666789999999997532210 0 01122344567888998887632 11110 11
Q ss_pred CCCCCcceeeeeeeEEECCCCcee
Q psy12521 227 KPAHTQFGHFYGSSYITAPNGTRT 250 (313)
Q Consensus 227 ~~~~~~~~~~~G~S~iv~p~G~vl 250 (313)
.++-...+++|+|+++
T Consensus 94 --------~~yNs~~v~~~~G~i~ 109 (284)
T cd07573 94 --------LYYNSAVVIDADGSLL 109 (284)
T ss_pred --------cEEEEEEEECCCCCEE
Confidence 2334566778999875
No 65
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=71.59 E-value=24 Score=31.28 Aligned_cols=40 Identities=5% Similarity=0.105 Sum_probs=24.8
Q ss_pred HHHHHHHHcCcEEEe-eceeecCCCCeEEEEEEEEcCCCcEe
Q psy12521 74 FFPQLCIKYNMVIVS-PILERDDVTDIIWNTAVVINNHGRVM 114 (313)
Q Consensus 74 ~l~~lA~~~~i~iv~-G~~~~~~~~~~~yNs~~vi~~~G~i~ 114 (313)
.++..|.+++++++. +..-... ...++=...+++|+|+++
T Consensus 187 ~~~arA~en~~~vv~~n~~G~~~-~~~~~G~S~ii~p~G~~~ 227 (268)
T cd07580 187 LAMAAAHSNGLFIACADRVGTER-GQPFIGQSLIVGPDGWPL 227 (268)
T ss_pred hhHHHHhhCCcEEEEEeeeeecc-CceEeeeeEEECCCCCee
Confidence 445667899999874 3322222 123444668899999874
No 66
>PLN02504 nitrilase
Probab=70.48 E-value=26 Score=32.70 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=14.2
Q ss_pred HHHHHHhCCCcEEEEeCCC
Q psy12521 164 NWLMFGLNGAEIVFNPSAT 182 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~ 182 (313)
+...++.+|||||+.|-.+
T Consensus 49 li~eAa~~gadLIVfPE~~ 67 (346)
T PLN02504 49 LIAEAAAYGSQLVVFPEAF 67 (346)
T ss_pred HHHHHHHCCCeEEEeCccc
Confidence 3455567899999999764
No 67
>PLN00202 beta-ureidopropionase
Probab=70.25 E-value=20 Score=34.38 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=43.0
Q ss_pred hHHHHHHhCCCcEEEEeCCCCCCCC----hhhH-----------HHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCC
Q psy12521 163 LNWLMFGLNGAEIVFNPSATITGLS----EPLW-----------GIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGK 227 (313)
Q Consensus 163 e~~r~~~~~Gadlil~ps~~~~~~~----~~~~-----------~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~ 227 (313)
.+.+.++.+|||+|+.|-.|..+.. ...| ...++..|.+++++++.. ...... .++
T Consensus 117 ~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l~~lA~~~~i~Iv~G--~~e~~~------~~~- 187 (405)
T PLN00202 117 PMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFLQELARKYNMVIVSP--ILERDV------NHG- 187 (405)
T ss_pred HHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHHHHHHHHCCeEEEEE--eeeeec------CCC-
Confidence 3445567789999999976543221 0112 233456788999998853 211100 000
Q ss_pred CCCCcceeeeeeeEEECCCCceec
Q psy12521 228 PAHTQFGHFYGSSYITAPNGTRTP 251 (313)
Q Consensus 228 ~~~~~~~~~~G~S~iv~p~G~vla 251 (313)
..++-.+.+++|+|+++.
T Consensus 188 ------~~~yNSa~vI~~~G~iig 205 (405)
T PLN00202 188 ------ETLWNTAVVIGNNGNIIG 205 (405)
T ss_pred ------CcEEEEEEEECCCCcEEE
Confidence 124456778899998753
No 68
>KOG2792|consensus
Probab=69.67 E-value=7.2 Score=34.66 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCCCe---EEEEEEEEcCCCcEeeeEeecC
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVTDI---IWNTAVVINNHGRVMGKHRKNH 121 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~~~---~yNs~~vi~~~G~i~~~y~K~~ 121 (313)
+.+.+.|+++.+|...|-...+. +- .---+++++|+|+.+..|-+.+
T Consensus 213 eqvk~vak~yRVYfs~gp~d~~~--DYlVDHSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 213 EQVKQVAKKYRVYFSTGPKDEDQ--DYLVDHSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred HHHHHHHHHhEEeeccCCCCCCC--CeeeeeeEEEEEECCCcceehhhcccC
Confidence 99999999999999887443322 21 2345899999999888777664
No 69
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=69.43 E-value=21 Score=31.58 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEee
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMG 115 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~ 115 (313)
..++..|.+++++++.-...-..+...++-...+++|+|+++.
T Consensus 186 ~~~~~rA~e~~~~vv~an~~G~~~~~~~~G~S~ii~p~G~il~ 228 (269)
T cd07586 186 TLLKFYAMMNGVYVVFANRVGVEDGVYFWGGSRVVDPDGEVVA 228 (269)
T ss_pred HHHHHHHHHhCCeEEEEeeecCcCCceEeCCcEEECCCCCEEE
Confidence 6677789999998874322111111344455678899999864
No 70
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=67.08 E-value=35 Score=30.70 Aligned_cols=46 Identities=24% Similarity=0.093 Sum_probs=28.9
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCC---------hhhHHHHHHHHHHhhCcEEEEE
Q psy12521 164 NWLMFGLNGAEIVFNPSATITGLS---------EPLWGIEARNAAIANGYFTCAI 209 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~~~~---------~~~~~~~~~~rA~en~~~vv~a 209 (313)
+.+..+.+|+|+|+.|-.+..... ...+...++..|.+++++++..
T Consensus 23 ~i~~A~~~gadlvvfPE~~ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~G 77 (279)
T cd07579 23 LAAEAKATGAELVVFPELALTGLDDPASEAESDTGPAVSALRRLARRLRLYLVAG 77 (279)
T ss_pred HHHHHHHCCCCEEEeCCccccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEEe
Confidence 344556789999999976532111 0123344566788999988864
No 71
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=66.97 E-value=30 Score=31.24 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCCCC--C--hhh-------------HHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcc
Q psy12521 171 NGAEIVFNPSATITGL--S--EPL-------------WGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQF 233 (313)
Q Consensus 171 ~Gadlil~ps~~~~~~--~--~~~-------------~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~ 233 (313)
+|||||+.|-.+.... . ... +...++..|.+++++++.... -... ...+
T Consensus 41 ~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~-e~~~------~~~~------- 106 (294)
T cd07582 41 LPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEALGEKAKELNVYIAANAY-ERDP------DFPG------- 106 (294)
T ss_pred CCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHHHHHHHHHcCEEEEEeee-eecC------CCCC-------
Confidence 4799999986543211 1 011 223456678899999886432 1100 0001
Q ss_pred eeeeeeeEEECCCCceec
Q psy12521 234 GHFYGSSYITAPNGTRTP 251 (313)
Q Consensus 234 ~~~~G~S~iv~p~G~vla 251 (313)
.++-.+.+++|+|+++.
T Consensus 107 -~~yNsa~~i~~~G~i~~ 123 (294)
T cd07582 107 -LYFNTAFIIDPSGEIIL 123 (294)
T ss_pred -cEEEEEEEECCCCcEEE
Confidence 24455778899998764
No 72
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=66.72 E-value=18 Score=33.01 Aligned_cols=42 Identities=2% Similarity=-0.028 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCC-CcEeeeE
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNH-GRVMGKH 117 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~-G~i~~~y 117 (313)
..++.-|.+++++|++-... +. ...+-...+++|+ |+++...
T Consensus 218 ~l~~arA~eN~~~vi~~N~~--g~-~~~~G~S~iv~P~~G~v~a~~ 260 (299)
T cd07567 218 QIQQAWAYANGVNLLAANYN--NP-SAGMTGSGIYAGRSGALVYHY 260 (299)
T ss_pred HHHHHHHHHcCceEEEecCC--CC-cCccccceEEcCCCCcEEEEe
Confidence 55678899999999854321 11 2233456788999 9988764
No 73
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=66.33 E-value=33 Score=31.15 Aligned_cols=73 Identities=15% Similarity=0.031 Sum_probs=40.0
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCC-------C---hhh---------HHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCC
Q psy12521 164 NWLMFGLNGAEIVFNPSATITGL-------S---EPL---------WGIEARNAAIANGYFTCAINRVGSETFPNQFTSG 224 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~~~-------~---~~~---------~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~ 224 (313)
..+.++.+|||||+.|-.+.... . ... ....+...|.+++++++.-.. -...
T Consensus 30 ~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~~-------- 100 (302)
T cd07569 30 LLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLFDRAKELGIGFYLGYA-ELTE-------- 100 (302)
T ss_pred HHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHHHHHHHhCeEEEEece-eecC--------
Confidence 45666778999999997542210 0 011 112244568889998876421 0000
Q ss_pred CCCCCCCcceeeeeeeEEECCCCcee
Q psy12521 225 DGKPAHTQFGHFYGSSYITAPNGTRT 250 (313)
Q Consensus 225 ~g~~~~~~~~~~~G~S~iv~p~G~vl 250 (313)
++. ...++=...+++|+|+++
T Consensus 101 ~~~-----~~~~yNsa~~i~~~G~i~ 121 (302)
T cd07569 101 DGG-----VKRRFNTSILVDKSGKIV 121 (302)
T ss_pred CCC-----cceeeeEEEEECCCCCEe
Confidence 010 002334467889999876
No 74
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=65.49 E-value=31 Score=31.38 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=37.1
Q ss_pred CCCcEEEEeCCCCCCCC---h-h-----------hHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCccee
Q psy12521 171 NGAEIVFNPSATITGLS---E-P-----------LWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGH 235 (313)
Q Consensus 171 ~Gadlil~ps~~~~~~~---~-~-----------~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~ 235 (313)
+|+|||+.|=.+..... . + .+...++..|.+++++++.... -... ++. ..
T Consensus 35 ~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~-e~~~--------~~~------~~ 99 (295)
T cd07566 35 KKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYP-EKVD--------ESS------PK 99 (295)
T ss_pred CCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeee-EecC--------CCC------Cc
Confidence 79999999976532211 0 0 1112334568889999876421 1100 000 02
Q ss_pred eeeeeEEECCCCceec
Q psy12521 236 FYGSSYITAPNGTRTP 251 (313)
Q Consensus 236 ~~G~S~iv~p~G~vla 251 (313)
++-.+.+++|+|++++
T Consensus 100 ~yNta~vi~~~G~ii~ 115 (295)
T cd07566 100 LYNSALVVDPEGEVVF 115 (295)
T ss_pred eEEEEEEEcCCCeEEE
Confidence 4456788999998764
No 75
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=63.50 E-value=39 Score=29.62 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=37.6
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCC--Ch--------hhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcc
Q psy12521 164 NWLMFGLNGAEIVFNPSATITGL--SE--------PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQF 233 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~~~--~~--------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~ 233 (313)
..+.++. |+|+++.|-.+.... .. ......++..|.++++.++.. ..-.. ++
T Consensus 25 ~i~~a~~-gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~la~~~~i~i~~~-~~~~~---------~~------- 86 (252)
T cd07575 25 KIEQLKE-KTDLIVLPEMFTTGFSMNAEALAEPMNGPTLQWMKAQAKKKGAAITGS-LIIKE---------GG------- 86 (252)
T ss_pred HHHHhhc-CCCEEEeCCcCcCCCCccHHHhhcccCChHHHHHHHHHHHCCeEEEEE-EEEcc---------CC-------
Confidence 3444444 999999997643211 10 112233466788999876632 21111 11
Q ss_pred eeeeeeeEEECCCCcee
Q psy12521 234 GHFYGSSYITAPNGTRT 250 (313)
Q Consensus 234 ~~~~G~S~iv~p~G~vl 250 (313)
.++-.+++++|+|.+.
T Consensus 87 -~~yNs~~~i~~~G~i~ 102 (252)
T cd07575 87 -KYYNRLYFVTPDGEVY 102 (252)
T ss_pred -ceEEEEEEECCCCCEE
Confidence 2345567789999764
No 76
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=61.98 E-value=49 Score=29.08 Aligned_cols=68 Identities=19% Similarity=0.075 Sum_probs=39.4
Q ss_pred HHHHHHhCCCcEEEEeCCCCC--CCCh----------hhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCC
Q psy12521 164 NWLMFGLNGAEIVFNPSATIT--GLSE----------PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHT 231 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~--~~~~----------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~ 231 (313)
+.+.++.+|+|+++.|-.+.. .... ..+...++..|.+++++++.--. ... ++
T Consensus 24 ~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~--~~~--------~~----- 88 (261)
T cd07585 24 WTRKAAAQGAELVCFPEMCITGYTHVRALSREAEVPDGPSTQALSDLARRYGLTILAGLI--EKA--------GD----- 88 (261)
T ss_pred HHHHHHHcCCCEEEecccccccccCCcccchhcccCCChHHHHHHHHHHHcCcEEEEecc--ccC--------CC-----
Confidence 445566789999999864321 1100 11223345678899998886432 110 11
Q ss_pred cceeeeeeeEEECCCCce
Q psy12521 232 QFGHFYGSSYITAPNGTR 249 (313)
Q Consensus 232 ~~~~~~G~S~iv~p~G~v 249 (313)
..+-..++++|+|.+
T Consensus 89 ---~~yNs~~vi~~~g~i 103 (261)
T cd07585 89 ---RPYNTYLVCLPDGLV 103 (261)
T ss_pred ---ceeEEEEEECCCCcE
Confidence 244567778888865
No 77
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=60.96 E-value=34 Score=30.16 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=35.6
Q ss_pred EEEeecCCccchHHHHHHhCCCcEEEE--eCCCCCCC--ChhhHHHHHHHHHHhhCcEEEEEc
Q psy12521 152 AINICYGRHHPLNWLMFGLNGAEIVFN--PSATITGL--SEPLWGIEARNAAIANGYFTCAIN 210 (313)
Q Consensus 152 g~~IC~D~~~pe~~r~~~~~Gadlil~--ps~~~~~~--~~~~~~~~~~~rA~en~~~vv~an 210 (313)
++++|.|.. ++..+....+|+|+|+. |..|.... .......-...++++|++.+.++-
T Consensus 34 ~V~~~ld~t-~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~H 95 (241)
T PF01784_consen 34 KVLVALDAT-PEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSAH 95 (241)
T ss_dssp EEEEESS-S-HHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEES
T ss_pred EEEEEEeCC-HHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEec
Confidence 677888874 56677777899999997 77663321 111223334567889999988873
No 78
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=60.57 E-value=21 Score=29.72 Aligned_cols=46 Identities=9% Similarity=0.017 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCCCe--EEEEEEEEcCCCcEeeeEe
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVTDI--IWNTAVVINNHGRVMGKHR 118 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~~~--~yNs~~vi~~~G~i~~~y~ 118 (313)
+.+.++++.+++...-......+.+.. .-+..++++|+|+++..|.
T Consensus 125 ~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 125 EEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 778889999887665332222221111 1247899999999988874
No 79
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=60.05 E-value=18 Score=31.86 Aligned_cols=76 Identities=11% Similarity=-0.083 Sum_probs=43.7
Q ss_pred cccHHHHHHhHHhcCCcEEE-ccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHHc
Q psy12521 4 IFHSPAIANGYFTCAINRVG-SETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKY 82 (313)
Q Consensus 4 l~~~~~~i~~A~~~gadlvv-~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~ 82 (313)
++++.+.+++++ +++|+|| ++=+++ ++.. .+.+.. ..+...+.+.
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~HwG~------------e~~~---------~p~~~q------------~~~a~~lida 215 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHWGI------------EYEN---------YPTPEQ------------RELARALIDA 215 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEeccCC------------CCCC---------CCCHHH------------HHHHHHHHHc
Confidence 367888888887 8999988 111111 1111 134444 6777777778
Q ss_pred CcEEEeeceeecCCCCeEEEEEEEEcCCCcE
Q psy12521 83 NMVIVSPILERDDVTDIIWNTAVVINNHGRV 113 (313)
Q Consensus 83 ~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i 113 (313)
|+.+|+|...-.-..-..|+..+++-.=|+.
T Consensus 216 GaDiIiG~HpHv~q~~E~y~~~~I~YSLGNf 246 (250)
T PF09587_consen 216 GADIIIGHHPHVIQPVEIYKGKPIFYSLGNF 246 (250)
T ss_pred CCCEEEeCCCCcccceEEECCEEEEEeCccc
Confidence 9999988543222113456555554445554
No 80
>KOG0808|consensus
Probab=59.46 E-value=11 Score=33.43 Aligned_cols=56 Identities=57% Similarity=1.017 Sum_probs=40.5
Q ss_pred cCCCCcccCCCCCCccccccccccCccccCCCCCccc-ccCCCc---cchHHHHHHHHHH
Q psy12521 25 ETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTP-VSRNSS---IVTFDYFFPQLCI 80 (313)
Q Consensus 25 ~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~l~~lA~ 80 (313)
..||--|.+|.+.+...++..+|+++++..+++..+| |+|-.+ ..++.--|++.++
T Consensus 294 evfpneftsgdgkpah~dfghfygssy~aapd~srtp~lsr~rdgllia~ldlnlcrq~k 353 (387)
T KOG0808|consen 294 EVFPNEFTSGDGKPAHNDFGHFYGSSYFAAPDASRTPSLSRYRDGLLIADLDLNLCRQYK 353 (387)
T ss_pred ccCCCcccCCCCCcccccccccccceeeecCCCCCCccccccccceEEeecchHHHHHhh
Confidence 3489889999888778889999999998877777776 777654 4444444444444
No 81
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=57.63 E-value=23 Score=31.13 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeee
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGK 116 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~ 116 (313)
..++..|.+++++++.-...-..+...++=.+.+++|+|+++..
T Consensus 184 ~~~~~rA~en~~~vv~~n~~g~~~~~~~~G~S~ii~p~G~vl~~ 227 (261)
T cd07570 184 ELVSSRSARTGLPYVYVNQVGGQDDLVFDGGSFIADNDGELLAE 227 (261)
T ss_pred HHHHHHHHHhCCcEEEEeCCCCCceEEEECceEEEcCCCCEEEe
Confidence 56778899999998743221111001223346788999997654
No 82
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=55.53 E-value=31 Score=30.78 Aligned_cols=69 Identities=22% Similarity=0.164 Sum_probs=39.1
Q ss_pred HHHHHHhCCCcEEEEeCCCCC------CCCh--------------hhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcC
Q psy12521 164 NWLMFGLNGAEIVFNPSATIT------GLSE--------------PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTS 223 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~------~~~~--------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~ 223 (313)
+.+..+++|||||+.|-.+.. .... ..+...++..|.+++++++.-...-..
T Consensus 26 ~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~-------- 97 (280)
T cd07574 26 WVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAALTPDYVALFSELARKYGINIIAGSMPVRE-------- 97 (280)
T ss_pred HHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEecceEEcC--------
Confidence 345556789999999976421 1010 112233456788899998754321001
Q ss_pred CCCCCCCCcceeeeeeeEEECCCCce
Q psy12521 224 GDGKPAHTQFGHFYGSSYITAPNGTR 249 (313)
Q Consensus 224 ~~g~~~~~~~~~~~G~S~iv~p~G~v 249 (313)
++ ..+-.+.+++|+|.+
T Consensus 98 -~~--------~~yNs~~~i~~~G~v 114 (280)
T cd07574 98 -DG--------RLYNRAYLFGPDGTI 114 (280)
T ss_pred -CC--------CeEEEEEEECCCCCE
Confidence 11 233457788998876
No 83
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=54.98 E-value=56 Score=29.13 Aligned_cols=72 Identities=18% Similarity=0.125 Sum_probs=40.6
Q ss_pred HHHHHHhCCCcEEEEeCCCCCC--CChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeeeeeE
Q psy12521 164 NWLMFGLNGAEIVFNPSATITG--LSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSY 241 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~~--~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G~S~ 241 (313)
+.+.++.+|+|+++.|-.+... ..........+..|.+++++++.-...-.. ++ ..+.-.+.
T Consensus 31 ~i~~a~~~ga~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~G~~~~~~---------~~-------~~~~Ns~~ 94 (270)
T cd07571 31 LTRELADEKPDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLTGAPRREP---------GG-------GRYYNSAL 94 (270)
T ss_pred HHhhcccCCCCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEEeeeeecc---------CC-------CceEEEEE
Confidence 3444556799999999664321 111223334456678899998875321100 00 01334466
Q ss_pred EECCCCceec
Q psy12521 242 ITAPNGTRTP 251 (313)
Q Consensus 242 iv~p~G~vla 251 (313)
+++|+|+++.
T Consensus 95 ~i~~~G~i~~ 104 (270)
T cd07571 95 LLDPGGGILG 104 (270)
T ss_pred EECCCCCCcC
Confidence 7899998653
No 84
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=54.77 E-value=64 Score=28.34 Aligned_cols=43 Identities=9% Similarity=0.204 Sum_probs=24.6
Q ss_pred HHHHHHHHcCcEEEee-ce-ee--cCCCCeEEEEEEEEcCCCcEeee
Q psy12521 74 FFPQLCIKYNMVIVSP-IL-ER--DDVTDIIWNTAVVINNHGRVMGK 116 (313)
Q Consensus 74 ~l~~lA~~~~i~iv~G-~~-~~--~~~~~~~yNs~~vi~~~G~i~~~ 116 (313)
.++.-|.+++++++.- .. .. ........=.+.+++|+|+++..
T Consensus 175 ~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~ 221 (259)
T cd07577 175 AMPIRALENRVFTITANRIGTEERGGETLRFIGKSQITSPKGEVLAR 221 (259)
T ss_pred hhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeEEECCCCCEEee
Confidence 3456677899988742 11 11 00002234567888999997543
No 85
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=54.66 E-value=66 Score=28.24 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=27.3
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCC---hh-----------hHHHHHHHHHHhhCcEEEEE
Q psy12521 164 NWLMFGLNGAEIVFNPSATITGLS---EP-----------LWGIEARNAAIANGYFTCAI 209 (313)
Q Consensus 164 ~~r~~~~~Gadlil~ps~~~~~~~---~~-----------~~~~~~~~rA~en~~~vv~a 209 (313)
+.+.++++|+|+|+.|-.+..... .. .....++.-|.+++++++.-
T Consensus 25 ~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G 84 (258)
T cd07578 25 LCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDCYIVVG 84 (258)
T ss_pred HHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCcEEEEe
Confidence 345556789999999976532110 00 11223345677899988764
No 86
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=53.67 E-value=23 Score=28.45 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=14.6
Q ss_pred EEEEEEcCCCcEeeeEee
Q psy12521 102 NTAVVINNHGRVMGKHRK 119 (313)
Q Consensus 102 Ns~~vi~~~G~i~~~y~K 119 (313)
.+.++|+++|+++..|.-
T Consensus 121 ~~~~lid~~G~i~~~~~g 138 (154)
T PRK09437 121 RISFLIDADGKIEHVFDK 138 (154)
T ss_pred eEEEEECCCCEEEEEEcC
Confidence 567999999998877744
No 87
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=51.22 E-value=56 Score=30.51 Aligned_cols=62 Identities=18% Similarity=0.041 Sum_probs=38.6
Q ss_pred CceEEEEeecCCccchH--------HHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEE
Q psy12521 148 FGRIAINICYGRHHPLN--------WLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAI 209 (313)
Q Consensus 148 ~~rig~~IC~D~~~pe~--------~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~a 209 (313)
.-=++.+||.|.+|-|. ...+.+..+|+++.--++.+..=...--.++++-.-+.+++++.+
T Consensus 48 ~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 48 AEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred CEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 44689999999998652 223446789999995444332100111234445556788998876
No 88
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.96 E-value=45 Score=24.66 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=29.9
Q ss_pred hCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccC
Q psy12521 170 LNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGS 214 (313)
Q Consensus 170 ~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~ 214 (313)
.+.||+||+++..-.. .-...++..|..++++++.++..|.
T Consensus 46 i~~aD~VIv~t~~vsH----~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 46 IKKADLVIVFTDYVSH----NAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred cCCCCEEEEEeCCcCh----HHHHHHHHHHHHcCCcEEEECCCCH
Confidence 4678999999876431 2223457789999999999986654
No 89
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=48.23 E-value=58 Score=28.91 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCC-CeEEEEEEEEcCCCcEeee
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVT-DIIWNTAVVINNHGRVMGK 116 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~-~~~yNs~~vi~~~G~i~~~ 116 (313)
..++.-|.+++++++.....-.... ...+-.+++++|+|+++..
T Consensus 187 ~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~v~~~ 231 (274)
T COG0388 187 VLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDGEVLAE 231 (274)
T ss_pred HHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCccEEee
Confidence 4466777889999885432221111 3577788999999985443
No 90
>PRK13287 amiF formamidase; Provisional
Probab=47.27 E-value=90 Score=28.95 Aligned_cols=41 Identities=17% Similarity=0.017 Sum_probs=22.3
Q ss_pred HHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeee
Q psy12521 76 PQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGK 116 (313)
Q Consensus 76 ~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~ 116 (313)
+.-|.+++++++.-...-....-.++=.+.+++|+|+++..
T Consensus 204 ~arA~en~~~vv~an~~G~~~~~~~~G~S~Iidp~G~vl~~ 244 (333)
T PRK13287 204 RSNAWQNLMYTASVNLAGYDGVFYYFGEGQVCNFDGTTLVQ 244 (333)
T ss_pred HHHHHhCCcEEEEEeccccCCCeeeeeeeEEECCCCcEEEe
Confidence 44566888887642111111001233456788999997654
No 91
>KOG0807|consensus
Probab=46.43 E-value=66 Score=28.55 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=47.5
Q ss_pred chHHHHHHhCCCcEEEEeCCCCCCC-C-----------hhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCC
Q psy12521 162 PLNWLMFGLNGAEIVFNPSATITGL-S-----------EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPA 229 (313)
Q Consensus 162 pe~~r~~~~~Gadlil~ps~~~~~~-~-----------~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~ 229 (313)
-|+....+++||++++.|-++.+-. . ...+..-.+..|.++++|+--...--..+ ++.
T Consensus 37 keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l~~k~m~~y~elar~~nIwlSlgg~~~r~~--------~~~-- 106 (295)
T KOG0807|consen 37 KELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPLDGKFMEQYRELARSHNIWLSLGGHHERSD--------DGN-- 106 (295)
T ss_pred HHHHHHHHHcCCCEEEcchhhhhhcCCcccceecccccChHHHHHHHHHHHhcCeeEEeccccCCCc--------ccc--
Confidence 3677788899999999998865421 0 11222334566778998876543221111 121
Q ss_pred CCcceeeeeeeEEECCCCceecc
Q psy12521 230 HTQFGHFYGSSYITAPNGTRTPG 252 (313)
Q Consensus 230 ~~~~~~~~G~S~iv~p~G~vla~ 252 (313)
..-+-...++|..|.++++
T Consensus 107 ----~k~~N~hl~id~~G~i~a~ 125 (295)
T KOG0807|consen 107 ----QKLRNTHLLIDSKGEIRAE 125 (295)
T ss_pred ----ceeeeeEEEEcCCchHHHH
Confidence 2345668889999988775
No 92
>PRK13981 NAD synthetase; Provisional
Probab=45.55 E-value=74 Score=31.64 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCcEEEeece-eecCCCCeEEEEEEEEcCCCcEeee
Q psy12521 73 YFFPQLCIKYNMVIVSPIL-ERDDVTDIIWNTAVVINNHGRVMGK 116 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~-~~~~~~~~~yNs~~vi~~~G~i~~~ 116 (313)
..++..|.+++++++.-.. -..+ +..+.-.+.+++|+|+++..
T Consensus 183 ~~~~~rA~En~~~vv~aN~vG~~~-~~~f~G~S~i~dp~G~il~~ 226 (540)
T PRK13981 183 AVLRARVRETGLPLVYLNQVGGQD-ELVFDGASFVLNADGELAAR 226 (540)
T ss_pred HHHHHHHHHhCCeEEEEecccCCC-ceEEeCceEEECCCCCEeee
Confidence 5678889999998874321 1111 12333457788899987653
No 93
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=45.04 E-value=1.1e+02 Score=23.63 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=54.0
Q ss_pred eeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCC-CCC----C-Ccc-cceeCCCCCCCeEEeCCceEEEEeecCCc
Q psy12521 88 SPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPR-VGD----F-NES-TYYFEGNTGHPVFETEFGRIAINICYGRH 160 (313)
Q Consensus 88 ~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~-~~~----~-~E~-~~~~~G~~~~~v~~~~~~rig~~IC~D~~ 160 (313)
+|..... |+-|++-++|.|+|++ .+.+|-.-.. +|+ . .|- .++.. ++.++-+.-|-.|.+- .
T Consensus 9 FG~v~i~---Gk~f~~DIvi~~dG~v-~rr~K~lskrK~GTSHkl~~eEle~~lee---~~E~ivvGTG~~G~l~----l 77 (121)
T COG1504 9 FGSVTIG---GKDFEHDIVIRPDGKV-ERREKELSKRKYGTSHKLALEELEELLEE---GPEVIVVGTGQSGMLE----L 77 (121)
T ss_pred eeeEEEC---CEeccccEEEecCCce-ehhhhhhhhhhcCcccccCHHHHHHHHhc---CCcEEEEecCceeEEE----e
Confidence 4554443 6889999999999984 6655542111 110 0 111 12222 2556666666667664 2
Q ss_pred cchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHH
Q psy12521 161 HPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIE 194 (313)
Q Consensus 161 ~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~ 194 (313)
.++.......+|+++++.|+.+ ....|..+
T Consensus 78 ~~ea~e~~r~k~~~vi~~pT~E----Aikr~nel 107 (121)
T COG1504 78 SEEAREFFRKKGCEVIELPTPE----AIKRYNEL 107 (121)
T ss_pred CHHHHHHHHhcCCeEEEeCCHH----HHHHHHHH
Confidence 3455556667899999999865 33455543
No 94
>KOG0806|consensus
Probab=44.85 E-value=21 Score=32.53 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=48.2
Q ss_pred CeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCccccee----CCCCC-CCeEEeCCc--------eEEEEeecCCc-c--
Q psy12521 98 DIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYF----EGNTG-HPVFETEFG--------RIAINICYGRH-H-- 161 (313)
Q Consensus 98 ~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~----~G~~~-~~v~~~~~~--------rig~~IC~D~~-~-- 161 (313)
...||+..|||-+|..+.+|+|.|++.. |..+.. .|+=+ +-+||+.+. .-+-+|+|-.. +
T Consensus 125 ~~~yrk~hlFD~d~~~~~ry~e~~~~~~----g~~f~~~~~~~gkfGi~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~~~ 200 (298)
T KOG0806|consen 125 LAKYRKNHLFDTDGPGVIRYRESHLLSP----GDQFTVVDTSYGKFGIFICFDIRFYDPAMILVKDGADLIVYPTAWNNE 200 (298)
T ss_pred hheeeeeEEeccCCccceeeeeeeccCC----CcCCCcccCCCCceEEEEEecccccchHHHHHHcCCcEEEecchHhhh
Confidence 5789999999999999999999998852 222211 13210 223454432 11445666532 2
Q ss_pred -----chHHHHHHhCCCcEEEEeCC
Q psy12521 162 -----PLNWLMFGLNGAEIVFNPSA 181 (313)
Q Consensus 162 -----pe~~r~~~~~Gadlil~ps~ 181 (313)
|..+..++..+|.....+..
T Consensus 201 ~l~~~~~hw~~~~~~~a~~n~~~v~ 225 (298)
T KOG0806|consen 201 LLSAVPLHWALLMRARANDNAANVH 225 (298)
T ss_pred cccccchHHHHHHhCCcccceeeee
Confidence 44666777777766555443
No 95
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=43.40 E-value=94 Score=27.50 Aligned_cols=57 Identities=9% Similarity=-0.085 Sum_probs=36.3
Q ss_pred EEEeecCCccchHHHHHHhCCCcEEEE--eCCCCCC--CChhhHHHHHHHHHHhhCcEEEEEc
Q psy12521 152 AINICYGRHHPLNWLMFGLNGAEIVFN--PSATITG--LSEPLWGIEARNAAIANGYFTCAIN 210 (313)
Q Consensus 152 g~~IC~D~~~pe~~r~~~~~Gadlil~--ps~~~~~--~~~~~~~~~~~~rA~en~~~vv~an 210 (313)
++++|-|.. ++..+.+..+|||+|+. |.-|... ........- ...+++|++.|.++-
T Consensus 38 ~I~~alD~t-~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~-~~~li~~~I~vy~~H 98 (249)
T TIGR00486 38 KVVVAVDAS-ESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGR-LKILLQNDISLYSAH 98 (249)
T ss_pred EEEEEecCC-HHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHH-HHHHHHCCCeEEEee
Confidence 467788874 56667777899999997 6655321 011112222 346889998888763
No 96
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=43.01 E-value=85 Score=21.14 Aligned_cols=19 Identities=0% Similarity=0.079 Sum_probs=16.9
Q ss_pred ccHHHHHHhHHhcCCcEEE
Q psy12521 5 FHSPAIANGYFTCAINRVG 23 (313)
Q Consensus 5 ~~~~~~i~~A~~~gadlvv 23 (313)
.+..+++++|+++|-+.+.
T Consensus 15 ~~~~~~~~~a~~~g~~~v~ 33 (67)
T smart00481 15 LSPEELVKRAKELGLKAIA 33 (67)
T ss_pred CCHHHHHHHHHHcCCCEEE
Confidence 4578899999999999999
No 97
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=41.57 E-value=93 Score=29.91 Aligned_cols=63 Identities=13% Similarity=-0.002 Sum_probs=38.9
Q ss_pred CCceEEEEeecCCccch--------HHHHHHhCCCcEEEEeCCCCCCCChh-hHHHHHHHHHHhhCcEEEEEc
Q psy12521 147 EFGRIAINICYGRHHPL--------NWLMFGLNGAEIVFNPSATITGLSEP-LWGIEARNAAIANGYFTCAIN 210 (313)
Q Consensus 147 ~~~rig~~IC~D~~~pe--------~~r~~~~~Gadlil~ps~~~~~~~~~-~~~~~~~~rA~en~~~vv~an 210 (313)
+.-=++.+||.|.+|-| +...+.+..+|+++.--++.+.. .. .--.++++-.-+.+++++.+-
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagr-YG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGR-YGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCcc-HHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34468999999999866 22334567999999954443321 11 111233444456788888874
No 98
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=41.20 E-value=94 Score=29.88 Aligned_cols=63 Identities=10% Similarity=-0.058 Sum_probs=38.7
Q ss_pred CCceEEEEeecCCccch--------HHHHHHhCCCcEEEEeCCCCCCCChh-hHHHHHHHHHHhhCcEEEEEc
Q psy12521 147 EFGRIAINICYGRHHPL--------NWLMFGLNGAEIVFNPSATITGLSEP-LWGIEARNAAIANGYFTCAIN 210 (313)
Q Consensus 147 ~~~rig~~IC~D~~~pe--------~~r~~~~~Gadlil~ps~~~~~~~~~-~~~~~~~~rA~en~~~vv~an 210 (313)
+.--++.+||.|.+|-| +...+.+..+|+++.--++.+.. .. .--.++++-.-+.+++++.+-
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagr-YG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 43 DAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGR-YGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCcc-HHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34468999999999876 22334567999999854443321 11 111233444456788888874
No 99
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=41.04 E-value=1.1e+02 Score=26.93 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=22.2
Q ss_pred CCCcEEEEeCCCCCCCC---------hhhHHHHHHHHHHhhCcEEE
Q psy12521 171 NGAEIVFNPSATITGLS---------EPLWGIEARNAAIANGYFTC 207 (313)
Q Consensus 171 ~Gadlil~ps~~~~~~~---------~~~~~~~~~~rA~en~~~vv 207 (313)
+|||||+.|-.+..... .......++..|.++++.++
T Consensus 33 ~gadLivfPE~~~~Gy~~~~~~~~~~~~~~~~~l~~~A~~~~~~i~ 78 (256)
T PRK10438 33 TGRDVIVLPEMFTTGFAMEAAASSLPQDDVVAWMTAKAQQTNALIA 78 (256)
T ss_pred cCCCEEEeCCcccCCCcccchhhccccchHHHHHHHHHHHcCeEEE
Confidence 69999999976532210 01223345667888886543
No 100
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=41.01 E-value=79 Score=24.54 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=14.2
Q ss_pred EEEEEcCCCcEeeeEe
Q psy12521 103 TAVVINNHGRVMGKHR 118 (313)
Q Consensus 103 s~~vi~~~G~i~~~y~ 118 (313)
+.++|+|+|+++..|+
T Consensus 126 ~~~lid~~G~i~~~~~ 141 (142)
T cd02968 126 AIYLVDPDGKLVRYYG 141 (142)
T ss_pred eEEEECCCCCEEEeec
Confidence 6899999999988875
No 101
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=40.33 E-value=2.2e+02 Score=26.78 Aligned_cols=64 Identities=14% Similarity=-0.022 Sum_probs=47.8
Q ss_pred ceEEEEeecCCccchHHH-HHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccC
Q psy12521 149 GRIAINICYGRHHPLNWL-MFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGS 214 (313)
Q Consensus 149 ~rig~~IC~D~~~pe~~r-~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~ 214 (313)
.|+.++.+|--.-+++.+ .+...|++=|++-+.-........+.. ..++.+.|++||.+.++..
T Consensus 230 ~~V~ii~~ypG~~~~~i~~a~~~~g~~GiVie~~G~G~~~~~~~~~--i~~~~~~gi~VV~sSr~~~ 294 (351)
T COG0252 230 PKVVIIKYYPGLSSSLIDSALLSSGAKGLVLEGTGSGNVTPALIES--IERASKRGIPVVYSSRCLS 294 (351)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHhcCCCEEEEEEECCCCCChHHHHH--HHHHHHCCCeEEEEeccCC
Confidence 699999999999998777 566899997777554333333444443 3488899999999998865
No 102
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=40.05 E-value=1.7e+02 Score=27.25 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=46.3
Q ss_pred ceEEEEeecCCccchHHHHHHhCCCcEEEEeCCCCCCCCh-hhHHHHHHHHHHhhCcEEEEEccccCC
Q psy12521 149 GRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSE-PLWGIEARNAAIANGYFTCAINRVGSE 215 (313)
Q Consensus 149 ~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv~an~~G~~ 215 (313)
-++.++-|+=-.-+++.+.+...|++=||.-..-...... ..|... ..++.+.|++||.+.+++..
T Consensus 210 ~~V~ii~~~pG~~~~~l~~~~~~~~~GiVl~~~G~Gn~p~~~~~~~~-l~~~~~~Gi~VV~~Sr~~~G 276 (335)
T PRK09461 210 QPIGVVTIYPGISAEVVRNFLRQPVKALILRSYGVGNAPQNPALLQE-LKEASERGIVVVNLTQCMSG 276 (335)
T ss_pred CcEEEEEecCCCCHHHHHHHHhCCCCEEEEccCCCCCCCCCHHHHHH-HHHHHHCCCEEEEeCCCCCC
Confidence 4688888888778888888888888877775543222221 234433 45788999999999998653
No 103
>PRK10799 metal-binding protein; Provisional
Probab=39.88 E-value=1.2e+02 Score=26.74 Aligned_cols=57 Identities=9% Similarity=-0.275 Sum_probs=36.9
Q ss_pred EEEeecCCccchHHHHHHhCCCcEEEE--eCCCCCCCC-hhhHHHHHHHHHHhhCcEEEEE
Q psy12521 152 AINICYGRHHPLNWLMFGLNGAEIVFN--PSATITGLS-EPLWGIEARNAAIANGYFTCAI 209 (313)
Q Consensus 152 g~~IC~D~~~pe~~r~~~~~Gadlil~--ps~~~~~~~-~~~~~~~~~~rA~en~~~vv~a 209 (313)
++++|-|.. ++..+.+..+|||+|+. |..|..... ..........+++++++.+.++
T Consensus 37 ~I~~alD~t-~~vi~~A~~~~~dlIitHHP~~~~~~~~~~~~~~~~~~~~li~~~i~vy~~ 96 (247)
T PRK10799 37 KIVTGVTAS-QALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGW 96 (247)
T ss_pred EEEEEeCCC-HHHHHHHHHCCCCEEEECCchhccCCCccccchHHHHHHHHHHCCCeEEEE
Confidence 677888874 56677778899999997 655533211 0111222335788999887776
No 104
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=38.72 E-value=52 Score=27.08 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEEEEEcCCCcEeeeEeecCCC
Q psy12521 100 IWNTAVVINNHGRVMGKHRKNHIP 123 (313)
Q Consensus 100 ~yNs~~vi~~~G~i~~~y~K~~L~ 123 (313)
.--+.++|+++|.|...+++....
T Consensus 119 ~~R~TfvId~dG~I~~~~~~v~~~ 142 (157)
T COG1225 119 IERSTFVIDPDGKIRYVWRKVKVK 142 (157)
T ss_pred ccceEEEECCCCeEEEEecCCCCc
Confidence 556889999999999998777543
No 105
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=36.66 E-value=78 Score=29.34 Aligned_cols=78 Identities=6% Similarity=0.050 Sum_probs=42.2
Q ss_pred ccccHHHHHHhHHhcCCcEEE--ccCCCCcccCCCCCCccccccccccCccccCCCCCcc-c-ccCCCccchHHHHHHHH
Q psy12521 3 EIFHSPAIANGYFTCAINRVG--SETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRT-P-VSRNSSIVTFDYFFPQL 78 (313)
Q Consensus 3 ~l~~~~~~i~~A~~~gadlvv--~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~l 78 (313)
.++++.++|+.|++.|||.|= +...|+. ++............ ..++..+ + ..+..--.++...|.+.
T Consensus 28 ~le~A~~lIdaAk~aGADavKfQt~~~~d~-~t~~~~~~~~~i~~--------~~~~~slyel~e~~~~p~e~~~~Lke~ 98 (347)
T COG2089 28 DLERAKELIDAAKEAGADAVKFQTFYTPDI-MTLESKNVPFKIKT--------LWDKVSLYELYEEAETPLEWHAQLKEY 98 (347)
T ss_pred cHHHHHHHHHHHHHcCcceeeeeccccccc-ccccccCCcccccc--------ccccccHHHHHHHhcCCHHHHHHHHHH
Confidence 478899999999999999987 2222332 22110000000000 0111111 2 12222334566889999
Q ss_pred HHHcCcEEEee
Q psy12521 79 CIKYNMVIVSP 89 (313)
Q Consensus 79 A~~~~i~iv~G 89 (313)
|++.|+.+...
T Consensus 99 a~~~Gi~~~SS 109 (347)
T COG2089 99 ARKRGIIFFSS 109 (347)
T ss_pred HHHcCeEEEec
Confidence 99999876644
No 106
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=35.34 E-value=85 Score=21.43 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEe
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVM 114 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~ 114 (313)
+.+.+|..+..+.++-|..-+. ++.|++.++++.++++.
T Consensus 19 ~~~~~Ll~~gkT~~ikGF~SK~---Gk~F~A~L~l~~~~~v~ 57 (62)
T PF13342_consen 19 EEVKELLEKGKTGLIKGFKSKK---GKPFDAYLVLDDDKKVK 57 (62)
T ss_pred HHHHHHHHcCCccCccCcccCC---CCEEeEEEEEcCCCeEE
Confidence 7788888888888888987643 78999999999777643
No 107
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=33.59 E-value=1.2e+02 Score=26.02 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=51.3
Q ss_pred cccHHHHHHhHH-hcCCcEEE-ccC-CCCcccCCCCCCccccccc-cccCccccCCCCCcccccCCCccchHHHHHHHHH
Q psy12521 4 IFHSPAIANGYF-TCAINRVG-SET-FPNQFTSGDGKPAHTEFGH-FYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLC 79 (313)
Q Consensus 4 l~~~~~~i~~A~-~~gadlvv-~~~-fPE~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA 79 (313)
++.+..++++.. ..+.|+-+ +.. =||-=+ +..+.++++ .+...+.- ..+. . +.+.+++
T Consensus 87 l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt----p~~lk~Y~~~~~~~~~~~-ltg~-~------------~~~~~~~ 148 (207)
T COG1999 87 LAELKALLKKLGEGEGDDVQVVFITVDPERDT----PEVLKKYAELNFDPRWIG-LTGT-P------------EQIEEVA 148 (207)
T ss_pred HHHHHHHHHHhccccCCCEEEEEEEECCCCCC----HHHHHHHhcccCCCCeee-eeCC-H------------HHHHHHH
Confidence 445667777777 67777744 111 144311 111333444 22221111 1222 5 8999999
Q ss_pred HHcCcEEE-eeceeecCCCCeEEEEEEEEcCCCcEeeeEeec
Q psy12521 80 IKYNMVIV-SPILERDDVTDIIWNTAVVINNHGRVMGKHRKN 120 (313)
Q Consensus 80 ~~~~i~iv-~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~ 120 (313)
+.+++.-. +.........-..-+..++++++|+++..|+-.
T Consensus 149 k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~ 190 (207)
T COG1999 149 KAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYG 190 (207)
T ss_pred HHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCC
Confidence 99987642 111111010012345678999999987776543
No 108
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=33.47 E-value=1.1e+02 Score=22.68 Aligned_cols=43 Identities=12% Similarity=-0.049 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeE
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKH 117 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y 117 (313)
+.+.+.+++.|+.+..+...... ..-...+.+.||+|..+..+
T Consensus 73 ~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~~~~DP~G~~iel~ 115 (120)
T cd08362 73 DALARQVAARGGTVLSEPGATDD--PGGGYGFRFFDPDGRLIEFS 115 (120)
T ss_pred HHHHHHHHHcCCceecCCcccCC--CCCceEEEEECCCCCEEEEE
Confidence 55555566778877655322221 11234788999999877543
No 109
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=33.29 E-value=42 Score=28.94 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=25.6
Q ss_pred cccHHHHHHhHHhcCCcEEEccCCCCcccCCCC
Q psy12521 4 IFHSPAIANGYFTCAINRVGSETFPNQFTSGDG 36 (313)
Q Consensus 4 l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~ 36 (313)
.+.++.++.+|.+++++|.| |+|.|.+|.+
T Consensus 121 ~d~Le~~l~~A~~~~~~iyv---FG~~F~~g~G 150 (206)
T PF10042_consen 121 NDDLEPYLQRAISDDATIYV---FGEPFRPGNG 150 (206)
T ss_pred HHHHHHHHHHHHhCCCEEEE---ECceecCCCC
Confidence 34567799999999999999 9999987764
No 110
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=32.42 E-value=3.4e+02 Score=23.69 Aligned_cols=44 Identities=14% Similarity=-0.118 Sum_probs=28.3
Q ss_pred hCCCcEEEEeCCCCCCCC--hhhHHHHHHHHHHhhCcEEEEEcccc
Q psy12521 170 LNGAEIVFNPSATITGLS--EPLWGIEARNAAIANGYFTCAINRVG 213 (313)
Q Consensus 170 ~~Gadlil~ps~~~~~~~--~~~~~~~~~~rA~en~~~vv~an~~G 213 (313)
++++|++++...|+.... ...++...-.+.++.|+=+|..++.-
T Consensus 181 r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~HpH 226 (250)
T PF09587_consen 181 RKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHPH 226 (250)
T ss_pred hcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 478999999999875321 12333333345567888888876643
No 111
>smart00642 Aamy Alpha-amylase domain.
Probab=31.58 E-value=1.2e+02 Score=25.01 Aligned_cols=23 Identities=0% Similarity=-0.034 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCcEEEeeceeecC
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDD 95 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~ 95 (313)
+.|.+.|+++|+.|++=++....
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~NH~ 95 (166)
T smart00642 73 KELVDAAHARGIKVILDVVINHT 95 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCCCC
Confidence 77778888999999977655443
No 112
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.28 E-value=44 Score=29.62 Aligned_cols=60 Identities=5% Similarity=-0.117 Sum_probs=36.4
Q ss_pred ccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHHc
Q psy12521 3 EIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKY 82 (313)
Q Consensus 3 ~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~ 82 (313)
.++.+.+.|+.|+.-||+.|+ ++-.. .++.. ...+.++ ...+.++.+.+.|+++
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~---~~~~~-~~~~~----~~~~~~~------------------~~~~~l~~l~~~a~~~ 141 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTL---ISAAH-AGYLT----PPNVIWG------------------RLAENLSELCEYAENI 141 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEE---EcCCC-CCCCC----CHHHHHH------------------HHHHHHHHHHHHHHHc
Confidence 456778899999999999988 53221 11100 0111010 1123338899999999
Q ss_pred CcEEEe
Q psy12521 83 NMVIVS 88 (313)
Q Consensus 83 ~i~iv~ 88 (313)
|+.+.+
T Consensus 142 gv~l~i 147 (275)
T PRK09856 142 GMDLIL 147 (275)
T ss_pred CCEEEE
Confidence 988764
No 113
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=29.84 E-value=3e+02 Score=25.43 Aligned_cols=64 Identities=11% Similarity=-0.025 Sum_probs=44.6
Q ss_pred ceEEEEeecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccC
Q psy12521 149 GRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGS 214 (313)
Q Consensus 149 ~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~ 214 (313)
-++.++-+|=-.-+++.+.+...|++=|+.-..-..... ..|...+ .+|.++|++||.+.++..
T Consensus 210 ~~V~il~~~pG~~~~~l~~~~~~g~~GiVl~~~G~Gn~p-~~~~~~l-~~a~~~gi~VV~~Sq~~~ 273 (323)
T cd00411 210 PKVGILYLYPGISAEAVRAFLRAGYKGIVLAGYGAGNVP-TDLIDEL-EEAAERGVVVVNSTQCEE 273 (323)
T ss_pred CCEEEEEECCCCCHHHHHHHHhCCCCEEEEEeECCCCCC-HHHHHHH-HHHHHCCCEEEEecCCCC
Confidence 368888788777788888777788887776544333222 2444433 478899999999999843
No 114
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=29.72 E-value=2.1e+02 Score=20.46 Aligned_cols=40 Identities=10% Similarity=-0.050 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeee
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGK 116 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~ 116 (313)
+.+.+-+++.|+.++.+...... + ..++.+.||+|.++..
T Consensus 68 ~~~~~~l~~~G~~~~~~~~~~~~--g--~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 68 DALYERLKELGAEIVTEPRDDPW--G--QRSFYFIDPDGNRIEF 107 (108)
T ss_dssp HHHHHHHHHTTSEEEEEEEEETT--S--EEEEEEE-TTS-EEEE
T ss_pred HHHHHHHHHCCCeEeeCCEEcCC--C--eEEEEEECCCCCEEEe
Confidence 55555666778888776544332 3 3589999999987653
No 115
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=29.10 E-value=1.5e+02 Score=21.96 Aligned_cols=42 Identities=7% Similarity=-0.088 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEe
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVM 114 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~ 114 (313)
+.+.+..++.|+.+..+-............++++.||+|..+
T Consensus 79 ~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~i 120 (125)
T cd08357 79 DALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNAL 120 (125)
T ss_pred HHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEE
Confidence 556666667888776543222110012357789999999865
No 116
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=27.92 E-value=1.5e+02 Score=22.43 Aligned_cols=22 Identities=14% Similarity=-0.038 Sum_probs=17.5
Q ss_pred HHHHHHhHHhcCCcEEEccCCCCcc
Q psy12521 7 SPAIANGYFTCAINRVGSETFPNQF 31 (313)
Q Consensus 7 ~~~~i~~A~~~gadlvv~~~fPE~~ 31 (313)
..+.+.++.++|..+++ |||..
T Consensus 78 ~~~~~~~~l~~g~~v~i---fPeG~ 99 (130)
T TIGR00530 78 ALKAAIEVLKQGRSIGV---FPEGT 99 (130)
T ss_pred HHHHHHHHHhCCCEEEE---eCCCC
Confidence 34556777889999999 99975
No 117
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=27.90 E-value=1.2e+02 Score=26.53 Aligned_cols=19 Identities=11% Similarity=-0.359 Sum_probs=14.3
Q ss_pred cccHHHHHHhHHhcCCcEEE
Q psy12521 4 IFHSPAIANGYFTCAINRVG 23 (313)
Q Consensus 4 l~~~~~~i~~A~~~gadlvv 23 (313)
++.+.+.++++++ ++|+||
T Consensus 159 ~~~i~~~i~~lr~-~~D~vI 177 (239)
T smart00854 159 REKILADIARARK-KADVVI 177 (239)
T ss_pred HHHHHHHHHHHhc-cCCEEE
Confidence 4556777888765 699988
No 118
>KOG0081|consensus
Probab=27.77 E-value=43 Score=27.77 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=58.7
Q ss_pred eeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCce--EEEEeecCCcc----
Q psy12521 88 SPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGR--IAINICYGRHH---- 161 (313)
Q Consensus 88 ~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~r--ig~~IC~D~~~---- 161 (313)
+|+-.++. .-+||+. +|+| .++-.++||-- |-+.|.+.+..+.|.+.| +|.+.-+|+-.
T Consensus 42 VGIDFreK--rvvY~s~---gp~g--~gr~~rihLQl--------WDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSF 106 (219)
T KOG0081|consen 42 VGIDFREK--RVVYNSS---GPGG--GGRGQRIHLQL--------WDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSF 106 (219)
T ss_pred eecccccc--eEEEecc---CCCC--CCcceEEEEee--------eccccHHHHHHHHHHHHHhhccceEEEeccchHHH
Confidence 67666655 5688886 5666 57888888643 334565556666666654 77777788753
Q ss_pred chHHHHH-------HhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEE
Q psy12521 162 PLNWLMF-------GLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAI 209 (313)
Q Consensus 162 pe~~r~~-------~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~a 209 (313)
-+...++ .-...||++.-.-..-......-+..+.+.|-..|++-.-.
T Consensus 107 LnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 107 LNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence 2222222 33567888765332111001111122344555666655443
No 119
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=27.63 E-value=91 Score=25.72 Aligned_cols=21 Identities=5% Similarity=-0.053 Sum_probs=18.6
Q ss_pred ccccHHHHHHhHHhcCCcEEE
Q psy12521 3 EIFHSPAIANGYFTCAINRVG 23 (313)
Q Consensus 3 ~l~~~~~~i~~A~~~gadlvv 23 (313)
.|+.+...++.|.+.|+||+|
T Consensus 78 ~La~A~~~l~~al~~~~DLli 98 (159)
T PF10649_consen 78 ALAEASAALRRALAEGADLLI 98 (159)
T ss_pred HHHHHHHHHHHHHhcCCCEEE
Confidence 467788899999999999999
No 120
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=27.52 E-value=4.4e+02 Score=26.01 Aligned_cols=93 Identities=9% Similarity=0.006 Sum_probs=49.8
Q ss_pred EEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEE-eCCceEEEEeecCCccchHHHHHHhCCCcEEEEeCC
Q psy12521 103 TAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFE-TEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSA 181 (313)
Q Consensus 103 s~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~-~~~~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~ 181 (313)
...|++.+|++++.-.+..+.. ...|.. ..-| -...++|.+|...-...+.+..+...|+|+|.+-++
T Consensus 194 ~LPVVd~~g~liGIIT~~DIl~------~~~~p~-----a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a 262 (495)
T PTZ00314 194 KLPIVNDNGELVALVSRSDLKK------NRGYPN-----ASLDSNGQLLVGAAISTRPEDIERAAALIEAGVDVLVVDSS 262 (495)
T ss_pred eEEEEcCCCcEEEEEEehHhhh------cccCch-----hhhccCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence 3566777777777655554432 111110 0111 123477888876444467788888999999998765
Q ss_pred CCCCCChhhHHHHHHHHHHhhCcEEEE
Q psy12521 182 TITGLSEPLWGIEARNAAIANGYFTCA 208 (313)
Q Consensus 182 ~~~~~~~~~~~~~~~~rA~en~~~vv~ 208 (313)
... ....|..+...+..-..+.|+.
T Consensus 263 ~G~--s~~~~~~i~~ik~~~~~~~v~a 287 (495)
T PTZ00314 263 QGN--SIYQIDMIKKLKSNYPHVDIIA 287 (495)
T ss_pred CCC--chHHHHHHHHHHhhCCCceEEE
Confidence 332 2233444433333322444444
No 121
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=27.02 E-value=59 Score=28.40 Aligned_cols=46 Identities=9% Similarity=-0.122 Sum_probs=29.1
Q ss_pred ccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccc
Q psy12521 160 HHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRV 212 (313)
Q Consensus 160 ~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~ 212 (313)
.+-+.++.+..+|||+|+.=+ .++. .+.+ ..-+...+++|+.+|..
T Consensus 166 ~l~~Aa~~L~~~gadlIvLDC-mGYt---~~~r---~~~~~~~g~PVlLsr~l 211 (221)
T PF07302_consen 166 ELAAAARELAEQGADLIVLDC-MGYT---QEMR---DIVQRALGKPVLLSRTL 211 (221)
T ss_pred HHHHHHHHHHhcCCCEEEEEC-CCCC---HHHH---HHHHHHhCCCEEeHHHH
Confidence 445677888899999988633 2221 1222 22345678999988864
No 122
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=26.86 E-value=3.7e+02 Score=24.77 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=45.9
Q ss_pred ceEEEEeecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccC
Q psy12521 149 GRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGS 214 (313)
Q Consensus 149 ~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~ 214 (313)
-++.++-++--..+++.+.+...|++=|++-+.-..... ..|... ..+|.+.+++||.+.+++.
T Consensus 212 ~~V~il~~~pG~~~~~l~~~~~~~~~GlVl~~~G~Gn~p-~~~~~~-l~~a~~~gipVV~~sq~~~ 275 (323)
T smart00870 212 PKVAIVKAYPGMDAELLDALLDSGAKGLVLEGTGAGNVP-PDLLEA-LKEALERGIPVVRTSRCLN 275 (323)
T ss_pred CcEEEEEeCCCCCHHHHHHHHhCCCCEEEEEeeCCCCCC-HHHHHH-HHHHHHCCCEEEEeccCCC
Confidence 478888888888888888877788887776554332222 234433 3478899999999999865
No 123
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.19 E-value=1.8e+02 Score=21.54 Aligned_cols=45 Identities=4% Similarity=-0.193 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEee
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRK 119 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K 119 (313)
+.+.+.+++.|+.+...-..... ...-+++++.||+|..+-.+.+
T Consensus 73 ~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 73 AEAKARAEAAGLPTFKEEDTTCC--YAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHHHHHHHcCCeEEccCCcccc--cCCcceEEEECCCCCEEEEEEe
Confidence 44555556678877643211111 1224678899999998776544
No 124
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=25.85 E-value=2.3e+02 Score=28.06 Aligned_cols=59 Identities=8% Similarity=-0.176 Sum_probs=39.2
Q ss_pred ceEEEEeecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEE
Q psy12521 149 GRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAI 209 (313)
Q Consensus 149 ~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~a 209 (313)
.++|..|+-.-...|-++.+...|+|+|++=++... ....|..+...|+.--+..++..
T Consensus 237 l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~--~~~~~~~i~~ik~~~p~~~vi~g 295 (505)
T PLN02274 237 LLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGD--SIYQLEMIKYIKKTYPELDVIGG 295 (505)
T ss_pred EEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCC--cHHHHHHHHHHHHhCCCCcEEEe
Confidence 467888887555668888999999999998665332 34556665555554434555543
No 125
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=25.81 E-value=1.6e+02 Score=25.59 Aligned_cols=19 Identities=11% Similarity=-0.270 Sum_probs=14.8
Q ss_pred cccHHHHHHhHHhcCCcEEE
Q psy12521 4 IFHSPAIANGYFTCAINRVG 23 (313)
Q Consensus 4 l~~~~~~i~~A~~~gadlvv 23 (313)
++.+.+.+++++++ +|+||
T Consensus 161 ~~~~~~~i~~lr~~-~D~vI 179 (239)
T cd07381 161 LERIAADIAEAKKK-ADIVI 179 (239)
T ss_pred HHHHHHHHHHHhhc-CCEEE
Confidence 45677788888776 99988
No 126
>PRK06724 hypothetical protein; Provisional
Probab=24.18 E-value=2.3e+02 Score=21.96 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEee
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMG 115 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~ 115 (313)
+.+.+.+++.|+.+..+-......... +=++++.||+|..+-
T Consensus 78 d~~~~~l~~~G~~~~~~p~~~~~~~~g-~~~~~f~DPdG~~iE 119 (128)
T PRK06724 78 DEVAEFLSSTKIKIIRGPMEMNHYSEG-YYTIDFYDPNGFIIE 119 (128)
T ss_pred HHHHHHHHHCCCEEecCCcccCCCCCC-EEEEEEECCCCCEEE
Confidence 777777788898876542222110022 337789999998654
No 127
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=24.00 E-value=2.6e+02 Score=21.32 Aligned_cols=19 Identities=0% Similarity=-0.242 Sum_probs=15.3
Q ss_pred ccHHHHHHhHHhcCCcEEE
Q psy12521 5 FHSPAIANGYFTCAINRVG 23 (313)
Q Consensus 5 ~~~~~~i~~A~~~gadlvv 23 (313)
.++...+++..+.|+|.|.
T Consensus 52 ~~~~~~~~~l~~~~~d~IH 70 (107)
T PF08821_consen 52 RKLVRRIKKLKKNGADVIH 70 (107)
T ss_pred hHHHHHHHHHHHCCCCEEE
Confidence 3567778888899999988
No 128
>KOG2733|consensus
Probab=23.75 E-value=2.3e+02 Score=26.85 Aligned_cols=139 Identities=16% Similarity=0.153 Sum_probs=71.7
Q ss_pred EEeecCCccchHHHHHHhCCCcEEEEeCCCCC-------------------CCChhhHHHHHHH----HHHhhCcEEEEE
Q psy12521 153 INICYGRHHPLNWLMFGLNGAEIVFNPSATIT-------------------GLSEPLWGIEARN----AAIANGYFTCAI 209 (313)
Q Consensus 153 ~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~-------------------~~~~~~~~~~~~~----rA~en~~~vv~a 209 (313)
++|| |...|+-...++ +.+.+|+|...... -.++.+|...++. +|.|+|+|||.|
T Consensus 66 i~i~-D~~n~~Sl~ema-k~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsa 143 (423)
T KOG2733|consen 66 ILIA-DSANEASLDEMA-KQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSA 143 (423)
T ss_pred EEEe-cCCCHHHHHHHH-hhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEee
Confidence 4444 666677667666 45788887543211 0144677655543 799999999988
Q ss_pred ccccCCCCCCCCcCCCCCCCCCcceeeeee-----eE---EE-CCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcc
Q psy12521 210 NRVGSETFPNQFTSGDGKPAHTQFGHFYGS-----SY---IT-APNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQ 280 (313)
Q Consensus 210 n~~G~~~~~~~~~~~~g~~~~~~~~~~~G~-----S~---iv-~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~ 280 (313)
||-+.-|-++ |.--.. -.|.|. |. -. .|.|-.+.... =|.++..-.+.++++++|+...
T Consensus 144 --CGfDSIPaDl----Gv~f~~--k~fdg~ln~VEsfl~Lh~~gp~G~sln~gT--weSallg~~n~~~l~~lR~~~~-- 211 (423)
T KOG2733|consen 144 --CGFDSIPADL----GVMFLR--KNFDGVLNHVESFLQLHSKGPSGYSLNTGT--WESALLGVANASELKALRKSIM-- 211 (423)
T ss_pred --cccCCCCccc----eeeeeh--hhccccHHHHHHHHhhhccCCccccccccc--HHHHHHHhcChHHHHHHHhhhC--
Confidence 5554433221 100000 012220 00 01 44444322211 1444555566778888887542
Q ss_pred cccchhhhhhhhcCccc-cccccccc
Q psy12521 281 ASIRELVYIQSMSGPTA-KLKSVTGF 305 (313)
Q Consensus 281 ~~~r~~~y~~~~~~~~~-~~~~~~~~ 305 (313)
.+++|..+..+-++..- ++++..|.
T Consensus 212 p~~ip~~~~~lkkR~~l~~~~e~~g~ 237 (423)
T KOG2733|consen 212 PQPIPNGCPPLKKRPTLWKIKEKGGV 237 (423)
T ss_pred CCcCccCCCCCCCCCceeeeeeccce
Confidence 24556666665554444 66665543
No 129
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.67 E-value=70 Score=28.46 Aligned_cols=21 Identities=5% Similarity=-0.198 Sum_probs=18.1
Q ss_pred ccccHHHHHHhHHhcCCcEEE
Q psy12521 3 EIFHSPAIANGYFTCAINRVG 23 (313)
Q Consensus 3 ~l~~~~~~i~~A~~~gadlvv 23 (313)
.++.+.+.++.|+.-|+..|+
T Consensus 97 ~~~~~~~~i~~a~~lG~~~i~ 117 (283)
T PRK13209 97 ALEIMRKAIQLAQDLGIRVIQ 117 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEE
Confidence 355678899999999999999
No 130
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=23.49 E-value=1.3e+02 Score=28.24 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=29.8
Q ss_pred cCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHHcCcEEE--eece
Q psy12521 17 CAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKYNMVIV--SPIL 91 (313)
Q Consensus 17 ~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv--~G~~ 91 (313)
++||||+ ++|.-+... + ..|+.. --+.++||++++.++ +|..
T Consensus 283 ~daDLVI---TGEGr~D~Q-----------------s-~~GK~p------------igVA~~Akk~~vPvIaiaGs~ 326 (378)
T COG1929 283 KDADLVI---TGEGRIDSQ-----------------S-LHGKTP------------IGVAKLAKKYGVPVIAIAGSL 326 (378)
T ss_pred ccCCEEE---eCCCccccc-----------------c-cCCccc------------hHHHHhhhhhCCCEEEEeccc
Confidence 7899999 999643211 1 246666 888999999998665 5653
No 131
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.38 E-value=2.2e+02 Score=20.75 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeE
Q psy12521 73 YFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKH 117 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y 117 (313)
+.+.+.+.+.++.++.+.... + .++ ++++.||+|..+..|
T Consensus 74 ~~~~~~~~~~g~~v~~~~~~~-~-~g~---~~~~~DPdGn~ie~~ 113 (114)
T cd07261 74 DALYAEWQAKGVKIIQEPTEM-D-FGY---TFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHCCCeEecCcccc-C-Ccc---EEEEECCCCCEEEee
Confidence 445555557888887653222 2 132 578999999976544
No 132
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=23.31 E-value=1.7e+02 Score=22.47 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=16.6
Q ss_pred eEEEEEEEEcCCCcEeeeEeec
Q psy12521 99 IIWNTAVVINNHGRVMGKHRKN 120 (313)
Q Consensus 99 ~~yNs~~vi~~~G~i~~~y~K~ 120 (313)
...-+.++++++|+++..|.-.
T Consensus 108 ~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 108 LAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred ceeEEEEEECCCCcEEEEEecC
Confidence 3456789999999987776544
No 133
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=22.70 E-value=94 Score=20.67 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=18.0
Q ss_pred HHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeeeeeEEECCCCceeccCC
Q psy12521 196 RNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLS 254 (313)
Q Consensus 196 ~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G~S~iv~p~G~vla~~~ 254 (313)
.++++.+|..+-... ..|...+++|+|++++-..
T Consensus 10 ea~~l~~Gr~l~~~~-------------------------~~g~~aa~~pdG~lvAL~~ 43 (56)
T PF09142_consen 10 EARDLRHGRRLPAAG-------------------------PPGPVAAFAPDGRLVALLE 43 (56)
T ss_dssp HHHHHHTT---B------------------------------S-EEEE-TTS-EEEEEE
T ss_pred HHHHHhCCCccCCCC-------------------------CCceEEEECCCCcEEEEEE
Confidence 567777887766651 1266889999999988653
No 134
>smart00037 CNX Connexin homologues. Connexin channels participate in the regulation of signaling between developing and differentiated cell types.
Probab=22.56 E-value=40 Score=20.03 Aligned_cols=10 Identities=40% Similarity=1.241 Sum_probs=7.9
Q ss_pred EeecCCccch
Q psy12521 154 NICYGRHHPL 163 (313)
Q Consensus 154 ~IC~D~~~pe 163 (313)
-+|||..||-
T Consensus 21 nvCyD~~fPi 30 (34)
T smart00037 21 NVCYDQAFPI 30 (34)
T ss_pred ceeccccccC
Confidence 3699999884
No 135
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.30 E-value=84 Score=27.85 Aligned_cols=20 Identities=5% Similarity=-0.180 Sum_probs=17.5
Q ss_pred cccHHHHHHhHHhcCCcEEE
Q psy12521 4 IFHSPAIANGYFTCAINRVG 23 (313)
Q Consensus 4 l~~~~~~i~~A~~~gadlvv 23 (313)
++...++++.|+.-|++.|+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~ 112 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQ 112 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEE
Confidence 45678899999999999999
No 136
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=22.00 E-value=2.9e+02 Score=26.04 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=34.9
Q ss_pred CCcEEEEeCCC-CCC-CC-hhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeeeeeEEECCCCc
Q psy12521 172 GAEIVFNPSAT-ITG-LS-EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGT 248 (313)
Q Consensus 172 Gadlil~ps~~-~~~-~~-~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G~S~iv~p~G~ 248 (313)
|+|+|+.|-.. +.. .. .+......+..|.+++++++.-... .+. ++. ..+.-...+++|+|+
T Consensus 197 ~~dlVv~PE~a~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~-~~~--------~~~------~~~yNsa~~~~~~G~ 261 (391)
T TIGR00546 197 KPDLVVWPETAFPFDLENSPQKLADRLKLLVLSKGIPILIGAPD-AVP--------GGP------YHYYNSAYLVDPGGE 261 (391)
T ss_pred CCCEEEcCccccccchhhCcHHHHHHHHHHHHhCCCEEEEeccc-ccC--------CCC------CceeeEEEEECCCCC
Confidence 89999999653 221 11 1112334455677889988754221 110 010 023345677899997
Q ss_pred eec
Q psy12521 249 RTP 251 (313)
Q Consensus 249 vla 251 (313)
++.
T Consensus 262 ~~~ 264 (391)
T TIGR00546 262 VVQ 264 (391)
T ss_pred ccc
Confidence 654
No 137
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=21.93 E-value=4.8e+02 Score=24.45 Aligned_cols=64 Identities=19% Similarity=0.032 Sum_probs=45.4
Q ss_pred ceEEEEeecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccC
Q psy12521 149 GRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGS 214 (313)
Q Consensus 149 ~rig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~ 214 (313)
-++.++-++=-.-+++.+.+...|++=|++-+.-..... ..|... ..+|.+.|++||.+.+++.
T Consensus 239 p~V~il~~~pG~~~~ll~~~~~~g~~GlVl~g~G~Gn~p-~~~~~a-l~~a~~~GipVV~~Sr~~~ 302 (349)
T TIGR00520 239 PKVDIIYAYQNAPPLIVNAVLDAGAKGIVLAGVGNGSLS-AAGLKV-NETAAKLGVPIVRSSRVPD 302 (349)
T ss_pred CcEEEEEECCCCCHHHHHHHHhCCCCEEEEEeECCCCCC-HHHHHH-HHHHHHCCCEEEEEccCCC
Confidence 478888888666788888888889887776544332222 244433 3478899999999999865
No 138
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=21.88 E-value=1.6e+02 Score=25.28 Aligned_cols=56 Identities=14% Similarity=0.040 Sum_probs=39.0
Q ss_pred EEEEeecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEcccc
Q psy12521 151 IAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVG 213 (313)
Q Consensus 151 ig~~IC~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G 213 (313)
..+.||-|.+.|+..+...+.|+++|...+..... ... ...+.++++.+|..-.-|
T Consensus 71 ~~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~~--~~~-----~~l~a~~~~~vV~m~~~~ 126 (210)
T PF00809_consen 71 PDVPLSIDTFNPEVAEAALKAGADIINDISGFEDD--PEM-----LPLAAEYGAPVVLMHSDG 126 (210)
T ss_dssp TTSEEEEEESSHHHHHHHHHHTSSEEEETTTTSSS--TTH-----HHHHHHHTSEEEEESESS
T ss_pred CCeEEEEECCCHHHHHHHHHcCcceEEeccccccc--chh-----hhhhhcCCCEEEEEeccc
Confidence 35678899999999887777799999998775321 111 234557788777765544
No 139
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.48 E-value=91 Score=27.74 Aligned_cols=23 Identities=4% Similarity=-0.136 Sum_probs=19.2
Q ss_pred ccccHHHHHHhHHhcCCcEEEccCCC
Q psy12521 3 EIFHSPAIANGYFTCAINRVGSETFP 28 (313)
Q Consensus 3 ~l~~~~~~i~~A~~~gadlvv~~~fP 28 (313)
.++.+.+.++.|+.-|++.|+ ++
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~---~~ 114 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQ---LA 114 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEE---ec
Confidence 355678899999999999999 65
No 140
>PRK10785 maltodextrin glucosidase; Provisional
Probab=21.38 E-value=1.8e+02 Score=29.49 Aligned_cols=67 Identities=6% Similarity=-0.075 Sum_probs=40.0
Q ss_pred cccHHHHHHhHHhcCCcEEE-ccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHHc
Q psy12521 4 IFHSPAIANGYFTCAINRVG-SETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKY 82 (313)
Q Consensus 4 l~~~~~~i~~A~~~gadlvv-~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~ 82 (313)
|+-+.+-+..-++.|++.|- +|.|+-....||...++..+...++ ....+ +.|.+.|.+.
T Consensus 178 l~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~G-------t~~df------------~~Lv~~aH~r 238 (598)
T PRK10785 178 LDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLG-------GDAAL------------LRLRHATQQR 238 (598)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccC-------CHHHH------------HHHHHHHHHC
Confidence 44556666777789999988 5555432333443333333332111 12334 8888889999
Q ss_pred CcEEEee
Q psy12521 83 NMVIVSP 89 (313)
Q Consensus 83 ~i~iv~G 89 (313)
||.|++=
T Consensus 239 GikVilD 245 (598)
T PRK10785 239 GMRLVLD 245 (598)
T ss_pred CCEEEEE
Confidence 9999864
No 141
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=20.54 E-value=2.8e+02 Score=22.57 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=11.1
Q ss_pred HHHHHHHHHcCcEEE
Q psy12521 73 YFFPQLCIKYNMVIV 87 (313)
Q Consensus 73 ~~l~~lA~~~~i~iv 87 (313)
.-+..+|.+.++.|+
T Consensus 114 ~G~~~lA~~~~~PIv 128 (163)
T cd07988 114 TGFYHIARGAGVPIL 128 (163)
T ss_pred hHHHHHHHHcCCCEE
Confidence 555668888888776
No 142
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=20.37 E-value=1.2e+02 Score=23.42 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.2
Q ss_pred cccHHHHHHhHHhcCCcEEEccCCCCcccCC
Q psy12521 4 IFHSPAIANGYFTCAINRVGSETFPNQFTSG 34 (313)
Q Consensus 4 l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g 34 (313)
.+.+..+|..+..+|++.|+ +|+..++.
T Consensus 21 ~qdalDLi~~~~~~~~~~i~---l~~~~l~~ 48 (113)
T PF13788_consen 21 EQDALDLIGTAYEHGADRII---LPKEALSE 48 (113)
T ss_pred hhHHHHHHHHHHHcCCCEEE---EEhHHCCH
Confidence 45678899999999999999 88876653
No 143
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=20.11 E-value=2e+02 Score=24.31 Aligned_cols=33 Identities=9% Similarity=0.293 Sum_probs=21.5
Q ss_pred HHHHHHHcCcEEEeeceeecCCCCeEEEEEEEEcCCCcEee
Q psy12521 75 FPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMG 115 (313)
Q Consensus 75 l~~lA~~~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~ 115 (313)
=+++++.+++.. ... +..|-+.++|||+|+++.
T Consensus 109 ~~~ia~~ygv~~------~~~--g~~~r~~fiID~~G~i~~ 141 (199)
T PTZ00253 109 TKSIARSYGVLE------EEQ--GVAYRGLFIIDPKGMLRQ 141 (199)
T ss_pred HhHHHHHcCCcc------cCC--CceEEEEEEECCCCEEEE
Confidence 345666666522 112 445789999999998754
Done!