RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12521
(313 letters)
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Length = 405
Score = 275 bits (706), Expect = 5e-91
Identities = 156/207 (75%), Positives = 173/207 (83%), Gaps = 1/207 (0%)
Query: 74 FFPQLCIKYNMVIVSPILERDDV-TDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNEST 132
+L YNMVI+ ILERD + IWNTAVVI+N GR +GKHRKNHIPRVGDFNEST
Sbjct: 151 MLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNEST 210
Query: 133 YYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWG 192
YY EGNTGHPVFETEFG++A+NICYGRHHP NW+MFGLNGAEIVFNPSATI LSEPLW
Sbjct: 211 YYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPLWS 270
Query: 193 IEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPG 252
IEARNAAIAN YFT INRVG+E FPN++TSGDG AH +FG FYGSSY+ AP+G+RTP
Sbjct: 271 IEARNAAIANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPS 330
Query: 253 LSRVRDGLLVAELDLNLNRQVKDVWGF 279
LSR +DGLLV ELDLNL RQVKD WGF
Sbjct: 331 LSRDKDGLLVVELDLNLCRQVKDFWGF 357
Score = 73.7 bits (181), Expect = 6e-15
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 9 AIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTP 61
AIAN YFT INRVG+E FPN++TSGDG AH EFG FYGSSY+ AP+G+RTP
Sbjct: 277 AIANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTP 329
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A
{Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A*
1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Length = 303
Score = 203 bits (518), Expect = 5e-64
Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 36/226 (15%)
Query: 74 FFPQLCIKYNMVIVSPILER--DDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFN-- 129
+ + + E + +NT+++++ G+++GK+RK H+P ++
Sbjct: 79 PLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAY 138
Query: 130 ------ESTYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATI 183
E Y+ G+ G PV++ + ++ + I R P W + GL GAEI+ T
Sbjct: 139 RPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTP 198
Query: 184 TG---------LSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFG 234
T L+ + + + NG ++ A + G E +
Sbjct: 199 THNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGME----------------ENC 242
Query: 235 HFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKD-VWGF 279
G S I AP G + + D ++ A +DL+ R++++ ++ F
Sbjct: 243 MLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNF 288
Score = 48.1 bits (115), Expect = 1e-06
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 16/50 (32%)
Query: 9 AIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGT 58
+ NG ++ A + G E E G S I AP G
Sbjct: 223 SYQNGAWSAAAGKAGME----------------ENCMLLGHSCIVAPTGE 256
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori
aliphatic amidase, hydrolase; 1.75A {Helicobacter
pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Length = 334
Score = 167 bits (424), Expect = 1e-49
Identities = 45/217 (20%), Positives = 85/217 (39%), Gaps = 24/217 (11%)
Query: 74 FFPQLCIKYNMVIVSPILERD-DVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNEST 132
+ + C + + V I+ER+ D +NTA++I+ G ++ K+RK +N
Sbjct: 87 LYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFP-----WNPIE 141
Query: 133 YYFEGNTGHPVFETEFG-RIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLW 191
++ G+ G PV E G ++A+ IC+ P G + S T W
Sbjct: 142 PWYPGDLGMPVCEGPGGSKLAVCICHDGMIPELAREAAYKGCNVYIRISGYSTQ-VNDQW 200
Query: 192 GIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTP 251
+ R+ A N +T ++N G + +++G I +GT
Sbjct: 201 ILTNRSNAWHNLMYTVSVNLAGYD----------------NVFYYFGEGQICNFDGTTLV 244
Query: 252 GLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVY 288
R ++ E+ + + WG + +I L +
Sbjct: 245 QGHRNPWEIVTGEIYPKMADNARLSWGLENNIYNLGH 281
Score = 41.3 bits (97), Expect = 2e-04
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 16/50 (32%)
Query: 9 AIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGT 58
A N +T ++N G + +++G I +GT
Sbjct: 208 AWHNLMYTVSVNLAGYD----------------NVFYYFGEGQICNFDGT 241
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 161 bits (409), Expect = 3e-48
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 29/208 (13%)
Query: 74 FFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTY 133
F + + IV+ E+D D+++N+AVV+ G + GK+RK H+ + E +
Sbjct: 71 FLMDVARDTGVYIVAGTAEKDG--DVLYNSAVVVGPRGFI-GKYRKIHLF----YREKFF 123
Query: 134 YFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGI 193
+ G+ G VF+ F ++ + IC+ P + L GA+++ +P+ L P
Sbjct: 124 FEPGDLGFRVFDLGFMKVGVMICFDWFFPESARTLALKGADVIAHPAN----LVMPYAPR 179
Query: 194 EARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGL 253
A+ N +T +RVG E F G S I +P
Sbjct: 180 AMPIRALENKVYTVTADRVGEE--RGL--------------KFIGKSLIASPKAEVLSMA 223
Query: 254 SRVRDGLLVAELDLNLNRQVK--DVWGF 279
S + + VAE+DL+L R + D+
Sbjct: 224 SETEEEVGVAEIDLSLVRNKRINDLNDI 251
Score = 42.6 bits (101), Expect = 7e-05
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 16/49 (32%)
Query: 9 AIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNG 57
A+ N +T +RVG E F G S I +P
Sbjct: 185 ALENKVYTVTADRVGEE--RGL--------------KFIGKSLIASPKA 217
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric
sandwich hydrolase; 1.66A {Nesterenkonia SP}
Length = 283
Score = 146 bits (372), Expect = 2e-42
Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 22/206 (10%)
Query: 74 FFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTY 133
+ + +V + + + TA + + HG V+ ++K + E
Sbjct: 87 RLRGIARDRGIALVWSLPGPEG-PEQRGITAELADEHGEVLASYQKVQLY---GPEEKAA 142
Query: 134 YFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGI 193
+ G PV ++++ +CY P GA++V P+A + G + GI
Sbjct: 143 FVPGEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTA-LAGDETSVPGI 201
Query: 194 EARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGL 253
A+ NG N G E G F G S + P G L
Sbjct: 202 LLPARAVENGITLAYANHCGPE---------GGL-------VFDGGSVVVGPAGQPLGEL 245
Query: 254 SRVRDGLLVAELDLNLNRQVKDVWGF 279
GLLV +L D +
Sbjct: 246 GV-EPGLLVVDLPDQSQDAGSDSADY 270
Score = 38.8 bits (91), Expect = 0.001
Identities = 12/50 (24%), Positives = 14/50 (28%), Gaps = 16/50 (32%)
Query: 9 AIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGT 58
A+ NG N G E G F G S + P G
Sbjct: 207 AVENGITLAYANHCGPE---------GGL-------VFDGGSVVVGPAGQ 240
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer,
thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A
{Pseudomonas aeruginosa} PDB: 2plq_A
Length = 341
Score = 134 bits (340), Expect = 3e-37
Identities = 38/218 (17%), Positives = 81/218 (37%), Gaps = 25/218 (11%)
Query: 74 FFPQLCIKYNMVIVSPILER---DDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNE 130
F + C K N+ V + + +NT V+I+N+G ++ K+RK +
Sbjct: 86 IFSRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIP-----WCP 140
Query: 131 STYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPL 190
++ G + + +I++ I ++P W + GAE++ + ++
Sbjct: 141 IEGWYPGGQTYVSEGPKGMKISLIIXDDGNYPEIWRDCAMKGAELIVRCQGYMYP-AKDQ 199
Query: 191 WGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRT 250
+ A+ A AN + N G + ++G S I +G
Sbjct: 200 QVMMAKAMAWANNCYVAVANAAGFD----------------GVYSYFGHSAIIGFDGRTL 243
Query: 251 PGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVY 288
G+ A+L L+ R + Q + ++++
Sbjct: 244 GECGEEEMGIQYAQLSLSQIRDARANDQSQNHLFKILH 281
Score = 28.3 bits (63), Expect = 3.5
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 16/50 (32%)
Query: 9 AIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGT 58
A AN + N G + ++G S I +G
Sbjct: 208 AWANNCYVAVANAAGFD----------------GVYSYFGHSAIIGFDGR 241
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus
aureus subsp}
Length = 281
Score = 92.3 bits (230), Expect = 5e-22
Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 48/229 (20%)
Query: 74 FFPQLCIKYNMVIVSP-ILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNEST 132
F L KY + IV+ + + + I+NTA +N G+++ ++ K H+ + E
Sbjct: 86 FIKHLAEKYKVDIVAGSVSNIRN--NQIFNTAFSVNKSGQLINEYDKVHLVPM--LREHE 141
Query: 133 YYFEGNTGHPVFETEFG-RIAINICY-------GRHHPLNWLMFGLNGAEIVFNPSA-TI 183
+ G F+ G + ICY R+ +GA+I F + +
Sbjct: 142 FLTAGEYVAEPFQLSDGTYVTQLICYDLRFPELLRYP-------ARSGAKIAFYVAQWPM 194
Query: 184 TGLS--EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSY 241
+ L L ++AR AI N F N G DG + G S
Sbjct: 195 SRLQHWHSL--LKAR--AIENNMFVIGTNSTGF----------DGN------TEYAGHSI 234
Query: 242 ITAPNGTRTPGLSRVRD--GLLVAELDLNLNRQVKDVWGFQASIRELVY 288
+ PNG + + + +L +L+LN Q ++ SI+ +Y
Sbjct: 235 VINPNGDL---VGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLY 280
Score = 29.5 bits (67), Expect = 1.1
Identities = 13/50 (26%), Positives = 15/50 (30%), Gaps = 16/50 (32%)
Query: 9 AIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGT 58
AI N F N G DG + G S + PNG
Sbjct: 208 AIENNMFVIGTNSTGF----------DGN------TEYAGHSIVINPNGD 241
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Length = 276
Score = 84.6 bits (210), Expect = 4e-19
Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 38/196 (19%)
Query: 90 ILERDDVTDIIWNTAVVINNHGRVMGKHRKNH-----IPRVGDFNESTYYFEGNTGHPVF 144
I E D ++NT V G ++ KHRK H +P F ES G++ F
Sbjct: 85 IPEEDA--GKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSF-STF 141
Query: 145 ETEFGRIAINICY-GRHHPLNWLMFGLNGAEIVFNPSA--TITGLS--EPLWGIEARNAA 199
+T + ++ + ICY R L + G +++ P A TG + E L AR A
Sbjct: 142 DTPYCKVGLGICYDMRFAELAQIY-AQRGCQLLVYPGAFNLTTGPAHWELL--QRAR--A 196
Query: 200 IANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRD- 258
+ N + + +G S + P G L++
Sbjct: 197 VDNQVYVATASPARD---------------DKASYVAWGHSTVVDPWGQV---LTKAGTE 238
Query: 259 -GLLVAELDLNLNRQV 273
+L +++DL ++
Sbjct: 239 ETILYSDIDLKKLAEI 254
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A
{Xanthomonas campestris PV}
Length = 266
Score = 83.9 bits (208), Expect = 5e-19
Identities = 35/212 (16%), Positives = 64/212 (30%), Gaps = 41/212 (19%)
Query: 74 FFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTY 133
+ + I + R + ++N + G + + K H NE
Sbjct: 67 WIRTQAARLGAAITGSVQLRTE--HGVFNRLLWATPDGAL-QYYDKRH--LFRFGNEHLR 121
Query: 134 YFEGNTGHPVFETEFGRIAINICY-------GRHHPLNWLMFGLNGAEIVFNPSAT-ITG 185
Y G E + RI +CY R+ + G ++ +
Sbjct: 122 YAAGRE-RLCVEWKGWRINPQVCYDLRFPVFCRNRF-DVERPGQLDFDLQLFVANWPSAR 179
Query: 186 LS--EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYIT 243
+ L + AR AI N F A+NRVG + G+ H+ G S +
Sbjct: 180 AYAWKTL--LRAR--AIENLCFVAAVNRVGVD--------GNQL-------HYAGDSAVI 220
Query: 244 APNGTRTPGLSRVRD--GLLVAELDLNLNRQV 273
G +R+ ++ + +
Sbjct: 221 DFLGQP---QVEIREQEQVVTTTISAAALAEH 249
Score = 29.6 bits (67), Expect = 1.3
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 15/50 (30%)
Query: 9 AIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGT 58
AI N F A+NRVG + G+ H+ G S + G
Sbjct: 191 AIENLCFVAAVNRVGVD--------GNQL-------HYAGDSAVIDFLGQ 225
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics,
four layer sandwich, PSI, protein structure initiative;
2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Length = 291
Score = 81.6 bits (202), Expect = 5e-18
Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 34/195 (17%)
Query: 90 ILERDDVTDIIWNTAVVINNHGRVMGKHRKNH-----IPRVGDFNESTYYFEGNTGHPVF 144
I E D TD I+NT+++ N G+++ KHRK H IP F+ES G
Sbjct: 99 IPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKS-TTI 157
Query: 145 ETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSA--TITGLS--EPLWGIEARNAAI 200
+T++G+ + ICY P ++ GA + PSA T+TG L +R A+
Sbjct: 158 DTKYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLL--ARSR--AV 213
Query: 201 ANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRD-- 258
N + + + H YG S + P G ++ +
Sbjct: 214 DNQVYVMLCSPARN---------------LQSSYHAYGHSIVVDPRGKI---VAEAGEGE 255
Query: 259 GLLVAELDLNLNRQV 273
++ AELD +
Sbjct: 256 EIIYAELDPEVIESF 270
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM,
nitrilase, nucleotide-binding protein, cancer; 2.80A
{Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Length = 440
Score = 78.6 bits (194), Expect = 1e-16
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 35/213 (16%)
Query: 74 FFPQLCIKYNMVIV--SPILERDDVTDIIWNTAVVINNHGRVMGKHRKNH-----IPRVG 126
+ +L K+N+ + + WNT ++I++ G ++ K H IP
Sbjct: 80 KYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKV 139
Query: 127 DFNESTYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSA--TIT 184
ES + G P +T GR+ ++ICY P L GA+++ PSA T
Sbjct: 140 RLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNT 199
Query: 185 GLS--EPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYI 242
GL+ E L + AR AI N + A + G+ + + YG S +
Sbjct: 200 GLAHWETL--LRAR--AIENQCYVVAAAQTGAH--------NPKRQS-------YGHSMV 240
Query: 243 TAPNGTRTPGLSRVRD--GLLVAELDLNLNRQV 273
P G +++ + + AE+DL+ +
Sbjct: 241 VDPWGAV---VAQCSERVDMCFAEIDLSYVDTL 270
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 50.4 bits (121), Expect = 4e-07
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 88 SPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETE 147
S + N A V++ GRV K+H+P G F+E YF P+
Sbjct: 97 SAQPKYGQPAGAPRNAAAVLHR-GRVALTFAKHHLPNYGVFDEF-RYFVPGDTMPIVRLH 154
Query: 148 FGRIAINIC---YGRHHPLNWLMFGLNGAEIVFNPSA 181
IA+ IC + + GA ++ + +A
Sbjct: 155 GVDIALAICEDLWQDGGRVPAAR--SAGAGLLLSVNA 189
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.79A
{Cytophaga hutchinsonii atcc 33406}
Length = 634
Score = 47.2 bits (113), Expect = 4e-06
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 31/119 (26%)
Query: 84 MVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNE------------S 131
+ + P+ +N ++ N G V G K + G E +
Sbjct: 83 VSLGLPMRIAGI----TYNCVCLVEN-GIVKGFSAKQFLANEGVHYETRWFTAWPRNHTT 137
Query: 132 TYYFEGNT---GHPVFETEFGRIAINIC------YGRHHPLNWLMFGLNGAEIVFNPSA 181
T+ + G ++ + RI IC GA +V NPSA
Sbjct: 138 TFLYNDVKYPFGDVLYNVKDARIGFEICEDAWRTDRVGIRH-----YEKGATLVLNPSA 191
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Length = 565
Score = 44.4 bits (105), Expect = 3e-05
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 100 IWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINIC--- 156
+N A +I G V G +RK +P F+E YF + VFE + + IC
Sbjct: 115 TYNAASLIVG-GEVAGTYRKQDLPNTEVFDEK-RYFATDAAPYVFELNGVKFGVVICEDV 172
Query: 157 -YGRHHPLNWLMFGLNGAEIVFNPSA 181
+ GA+++ P+
Sbjct: 173 WHA--SAAQLAK--AAGAQVLIVPNG 194
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase,
glutaminase, glutamine-dependent synthetase, ligase;
2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A*
3szg_A* 3dla_A* 3syt_A*
Length = 680
Score = 43.6 bits (103), Expect = 5e-05
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 24/117 (20%)
Query: 84 MVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYY--------- 134
+V+ +P+ R I+NTAVVI+ G V+G K+++P +F E
Sbjct: 92 LVVGAPLRHRHR----IYNTAVVIHR-GAVLGVVPKSYLPTYREFYERRQMAPGDGERGT 146
Query: 135 ---------FEGNTGHPVFETEFGRIAINICYGRHHPLNWLMF-GLNGAEIVFNPSA 181
F + + + + I P+ L GA ++ N S
Sbjct: 147 IRIGGADVAFGTDLLFAASDLPGFVLHVEIAEDMFVPMPPSAEAALAGATVLANLSG 203
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.15
Identities = 30/159 (18%), Positives = 42/159 (26%), Gaps = 64/159 (40%)
Query: 52 ITAPNG---TRTPVS-RNSSIVTFDYFFPQLCIKYNMVIV---SPILERDDVTDIIWNTA 104
AP+G +R P S R F P V S +L +D+I
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSN--RFLP--------VASPFHSHLLV--PASDLI---- 439
Query: 105 VVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNT-GHPVFETEFG------------RI 151
D ++ F PV++T G RI
Sbjct: 440 --------------------NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 152 AINICYGRHHPLNW---LMFGLNGAEIVFNPSATITGLS 187
I P+ W F + F P +GL
Sbjct: 480 VDCII---RLPVKWETTTQFKATHI-LDFGPGGA-SGLG 513
Score = 31.6 bits (71), Expect = 0.37
Identities = 62/376 (16%), Positives = 118/376 (31%), Gaps = 120/376 (31%)
Query: 10 IANGYFTCAINRVGSETFPN------QFTS----------GDGKPAHTE--FGHFYGSSY 51
+++G + V + +F QF D +P G F G Y
Sbjct: 11 LSHGSLEHVLL-VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG--Y 67
Query: 52 IT-----APNGTRTPVSRNSSIVTFDYFFPQLCIKYNMV--IVSPILERDDVT-----DI 99
++ + G V + F+ + ++ N + + + +L+ +D T ++
Sbjct: 68 VSSLVEPSKVGQFDQVLN-LCLTEFENCY----LEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 100 IWN--TAVVINNHGRVMGKHRKNHIPRVGDFNESTYY--F--EGNTGHPVFETEFGRIAI 153
I N TA ++ R K + + R + F +GNT FE E +
Sbjct: 123 IKNYITARIMAK--RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FE-ELRDL-- 176
Query: 154 NICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRV- 212
Y +H L I +E L + R A FT +N +
Sbjct: 177 ---YQTYHVL---------------VGDLIKFSAETLSEL-IRTTLDAEKVFTQGLNILE 217
Query: 213 ---GSETFPNQ------FTSGDGKPAH--TQFGHFYGSSYITAPNGTRTP--------GL 253
P++ S P Q H+ +TA TP G
Sbjct: 218 WLENPSNTPDKDYLLSIPISC---PLIGVIQLAHY----VVTAKLLGFTPGELRSYLKGA 270
Query: 254 SRVRDGLLVA----------ELDLNLNRQVKDV-W-GFQA-------SIRELVYIQSMSG 294
+ GL+ A +++ + + + + G + S+ + S+
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 295 ----PTAKLKSVTGFS 306
P+ L S++ +
Sbjct: 331 NEGVPSPML-SISNLT 345
Score = 29.6 bits (66), Expect = 1.7
Identities = 28/160 (17%), Positives = 47/160 (29%), Gaps = 50/160 (31%)
Query: 142 PVFETEFGRIAINICYGRHHPL-----NWLMFGLNGAEIVFNPSATITGLSEPLWGIE-A 195
F F +A + H L + + L + FN + P++
Sbjct: 414 LKFSNRFLPVASP--F--HSHLLVPASDLINKDLVKNNVSFNAKD----IQIPVYDTFDG 465
Query: 196 RNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAH----TQFG--HF--YGSSYITAPNG 247
+ + +G + I P TQF H +G P G
Sbjct: 466 SDLRVLSGSISERIVD--------CIIR---LPVKWETTTQFKATHILDFG------PGG 508
Query: 248 TRTPG--LSRVRDG-----LLVAELDLNLNRQVKDVWGFQ 280
G R +DG ++ LD+N + GF+
Sbjct: 509 ASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY----GFK 544
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 1.2
Identities = 49/327 (14%), Positives = 79/327 (24%), Gaps = 117/327 (35%)
Query: 3 EIFHSPAIANG---YFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTR 59
I S +G F +++ E +F + + F S T
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSK-QEEMV-QKFVEEVLRINYK----FLMSPIKTEQRQPS 106
Query: 60 TPVSRNSSIVTFDYFFPQLCIKYNMVIVSPILE-RDDVTDIIWNTAVVINNHGRVM---G 115
Y Q+ KYN+ + P L+ R + ++ V+I G + G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI--DG--VLGSG 162
Query: 116 KH-------RKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMF 168
K + DF +F WL
Sbjct: 163 KTWVALDVCLSYKVQCKMDFK-------------IF--------------------WLNL 189
Query: 169 G-LNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGK 227
N E V + +P W + + S + S +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDH----------------SSNIKLRIHSIQAE 233
Query: 228 PAHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVW------GFQA 281
Y + LLV L +V F
Sbjct: 234 LRRLLKSKPY-------------------ENCLLV--LL--------NVQNAKAWNAFNL 264
Query: 282 SIRELVYIQSMSGPTAKLKSVTGFSSS 308
S + L+ T + K VT F S+
Sbjct: 265 SCKILL--------TTRFKQVTDFLSA 283
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural
genomics, NPPSFA, national proje protein structural and
functional analyses; 2.10A {Thermus thermophilus}
Length = 487
Score = 28.4 bits (63), Expect = 3.7
Identities = 12/54 (22%), Positives = 17/54 (31%)
Query: 91 LERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVF 144
+ D+ N A + GR + HRK G + G PV
Sbjct: 329 HGLRVLYDLAHNNAKFEEHRGRRVLVHRKGATRAFGPGHPEVPEEYRRVGQPVL 382
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.429
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,976,063
Number of extensions: 299170
Number of successful extensions: 571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 36
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)